Citrus Sinensis ID: 016933
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | 2.2.26 [Sep-21-2011] | |||||||
| P48977 | 380 | Alcohol dehydrogenase OS= | N/A | no | 1.0 | 1.0 | 0.794 | 0.0 | |
| P14673 | 380 | Alcohol dehydrogenase 1 O | N/A | no | 1.0 | 1.0 | 0.792 | 0.0 | |
| P14674 | 380 | Alcohol dehydrogenase 2 O | N/A | no | 1.0 | 1.0 | 0.792 | 0.0 | |
| P14675 | 380 | Alcohol dehydrogenase 3 O | N/A | no | 1.0 | 1.0 | 0.792 | 0.0 | |
| P28032 | 380 | Alcohol dehydrogenase 2 O | N/A | no | 1.0 | 1.0 | 0.786 | 0.0 | |
| P17648 | 380 | Alcohol dehydrogenase OS= | N/A | no | 1.0 | 1.0 | 0.776 | 0.0 | |
| P14219 | 379 | Alcohol dehydrogenase 1 O | N/A | no | 0.994 | 0.997 | 0.777 | 0.0 | |
| P25141 | 382 | Alcohol dehydrogenase 1 O | N/A | no | 0.994 | 0.989 | 0.775 | 0.0 | |
| Q2R8Z5 | 379 | Alcohol dehydrogenase 1 O | yes | no | 0.994 | 0.997 | 0.775 | 0.0 | |
| Q75ZX4 | 379 | Alcohol dehydrogenase 1 O | N/A | no | 0.994 | 0.997 | 0.775 | 0.0 |
| >sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/380 (79%), Positives = 347/380 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+TAG ++ C+AAVAWEAGKPL+I++VEVAPPQA EVRIKI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
PLFPRI+GHEA G+VESVGEGV+DL+ GDHVLPVFTGEC DC HC+S+ SNMCDLLRIN
Sbjct: 61 NPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+DG+SRFSI G+P+ HF+GTSTFSEYTVVH GC+AKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP++GS+VAVFGLGAVGLAAAEGAR++GASRIIGVD S RFEEAKKFG
Sbjct: 181 STGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN H++P+QEVIAE+TN GVDRS+ECTG+ + MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KDAVF T P+N LNERTLKGTFFGNYK RTD+PSVV+ YMNK+LELEKFITH++PFSEIN
Sbjct: 301 KDAVFKTHPVNFLNERTLKGTFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAFEYM+KGEGLRCII ME+
Sbjct: 361 KAFEYMLKGEGLRCIIRMEE 380
|
Malus domestica (taxid: 3750) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1 |
| >sp|P14673|ADH1_SOLTU Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/380 (79%), Positives = 348/380 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+T G ++ CKAAVAWEAGKPL++++V+VAPPQ MEVR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSTTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
P+FPRI GHEAAG+VESVGEGV++L GDHVLPVFTGEC DC HC+S+ SNMC LLRIN
Sbjct: 61 NPVFPRILGHEAAGIVESVGEGVTELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD ++ RFE+AKKFG
Sbjct: 181 STGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
K+AVF T P+N+LNERTLKGTFFGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KEAVFKTHPMNLLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAF+ M+KGEGLRCII+MED
Sbjct: 361 KAFDLMLKGEGLRCIITMED 380
|
Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/380 (79%), Positives = 347/380 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+T G ++ CKAAVAWEAGKPL++++V+VAPPQ MEVR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSTTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
P+FPRI GHEAAG+VESVGEGV++L GDHVLPVFTGEC DC HC+S+ SNMC LLRIN
Sbjct: 61 NPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD ++ RFE+AKKFG
Sbjct: 181 STGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
K+AVF T P+N LNERTLKGTFFGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAF+ M+KGEGLRCII+MED
Sbjct: 361 KAFDLMLKGEGLRCIITMED 380
|
Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14675|ADH3_SOLTU Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/380 (79%), Positives = 347/380 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+T G ++ CKAAVAWEAGKPL++++V+VAPPQ MEVR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSTTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
P+FPRI GHEAAG+VESVGEGV++L GDHVLPVFTGEC DC HC+S+ SNMC LLRIN
Sbjct: 61 NPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD ++ RFE+AKKFG
Sbjct: 181 STGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
K+AVF T P+N LNERTLKGTFFGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KEAVFKTHPMNFLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAF+ M+KGEGLRCII+MED
Sbjct: 361 KAFDLMLKGEGLRCIITMED 380
|
Solanum tuberosum (taxid: 4113) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P28032|ADH2_SOLLC Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/380 (78%), Positives = 344/380 (90%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+T G ++ CKAAVAWEAGKPL++++V+VAPPQ MEVR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSTTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
P+FPRI GHEAAG+VESVGEGV+DL GDHVLPVFTGEC DC HC+S+ SNMC LLRIN
Sbjct: 61 NPVFPRILGHEAAGIVESVGEGVTDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML DG+SRFSING P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGA+LNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD ++ RFE+AKKFG
Sbjct: 181 STGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
K+AVF T P+N LNERTLKGTFFGNYKPR+D+P VV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KEAVFKTHPLNFLNERTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAF+ M+KGEGLRCII+M D
Sbjct: 361 KAFDLMLKGEGLRCIITMAD 380
|
Solanum lycopersicum (taxid: 4081) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P17648|ADH_FRAAN Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2 | Back alignment and function description |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/380 (77%), Positives = 344/380 (90%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSST G ++ C+AAVAWEAGKPL+I++VEVAPPQA VR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSSTEGKVICCRAAVAWEAGKPLVIEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
PLFPRI+GHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +C HC+S+ SNMCDLLRIN
Sbjct: 61 NPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML DG+SRFSI G+P+ HF+GTSTFS YTV H GC+AKINP +PLDKVCILSCG+
Sbjct: 121 TDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNV KP++GS+VAVFGLGAVGLAAAEGAR+AGASRIIGVD +S RFEEAKKFG
Sbjct: 181 STGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
+T+FVN +H +P+QEVIAE+TNGGVDRS+ECTGNI MI AFECVHDGWGVAVLVGVP
Sbjct: 241 ITEFVNPKDHKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KDAVF T P+N LNERTLKGTFFGNYKPRTD+PSVV+ YMNK+LE++KFITH++PFS+IN
Sbjct: 301 KDAVFTTHPMNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAF+YM+KGEG+RCII+ME+
Sbjct: 361 KAFDYMLKGEGIRCIITMEE 380
|
This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration. Fragaria ananassa (taxid: 3747) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P14219|ADH1_PENAM Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/378 (77%), Positives = 342/378 (90%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
+TAG ++ CKAAVAWEAGKPL I++VEVAPPQAMEVR+KI YTSLC TD+YFWE+KGQTP
Sbjct: 2 ATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTP 61
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
+FPRIFGHEA G++ESVGEGV+D+ GDHVLPVFTGEC +C HC+S SNMCDLLRIN V
Sbjct: 62 VFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTV 121
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
RGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+ST
Sbjct: 122 RGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGIST 181
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
GLGA++NVAKP +GS+VA+FGLGAVGLAAAEGARIAGASRIIGVD + RFEEAKKFG T
Sbjct: 182 GLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCT 241
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+FVN +H++P+QEV+A+MTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KD
Sbjct: 242 EFVNPKDHNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKD 301
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
A F T P+N LNERTLKGTFFGN+KPRTDLP+VV++YM K+LE+EKFITH +PFSEINKA
Sbjct: 302 AEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKA 361
Query: 363 FEYMVKGEGLRCIISMED 380
F+ M KGEG+RCII ME+
Sbjct: 362 FDLMAKGEGIRCIIRMEN 379
|
Pennisetum americanum (taxid: 4543) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/379 (77%), Positives = 345/379 (91%), Gaps = 1/379 (0%)
Query: 2 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT 61
S+TAG ++ CKAAVAWEAGKPL+I++VEVAPPQ MEVR+KI +TSLC TD+YFWE+KGQT
Sbjct: 3 SNTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQT 62
Query: 62 PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP 121
PLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC CRHC+S+ SNMCDLLRIN
Sbjct: 63 PLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINT 122
Query: 122 VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVS 181
RGVM+ DGQ+RFS +G+P+ HF+GTSTFSEYTV HSGCV KI+P APLDKVC+LSCG+S
Sbjct: 123 DRGVMIHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGIS 182
Query: 182 TGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241
TGLGATLNVAKP +GS+VA+FGLGAVGLAAAEGARIAGASRIIGVD + RF +AKKFGV
Sbjct: 183 TGLGATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKKFGV 242
Query: 242 TDFVNTSEH-DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
T+FVN +H D+P+Q+VIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 243 TEFVNPKDHGDKPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPN 302
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+N+LNERTLKGTFFGNYKP++D+PSVVD YM K+LELEKFITH++PFSEIN
Sbjct: 303 KDDAFKTHPMNLLNERTLKGTFFGNYKPKSDIPSVVDKYMKKELELEKFITHQVPFSEIN 362
Query: 361 KAFEYMVKGEGLRCIISME 379
KAF+YM+KGE +RC+I+ME
Sbjct: 363 KAFDYMLKGESIRCMITME 381
|
This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration. Petunia hybrida (taxid: 4102) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q2R8Z5|ADH1_ORYSJ Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/378 (77%), Positives = 341/378 (90%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
+TAG ++ CKAAVAWEA KPL+I++VEVAPPQAMEVR+KI +TSLC TD+YFWE+KGQTP
Sbjct: 2 ATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTP 61
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
+FPRIFGHEA G+VESVGEGV+DL GDHVLPVFTGEC +C HC+S SNMCDLLRIN
Sbjct: 62 VFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTD 121
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
RGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+ST
Sbjct: 122 RGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGIST 181
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
GLGAT+NVAKP +GS+VA+FGLGAVGLAAAEGARIAGASRIIG+D ++ RFEEA+KFG T
Sbjct: 182 GLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCT 241
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+FVN +HD+P+Q+V+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KD
Sbjct: 242 EFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKD 301
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
A F T P+N LNERTLKGTFFGNYKPRTDLP+VV++YM K+LE+EKFITH +PFSEIN A
Sbjct: 302 AEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTA 361
Query: 363 FEYMVKGEGLRCIISMED 380
F+ M KGEG+RCII ME+
Sbjct: 362 FDLMHKGEGIRCIIRMEN 379
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q75ZX4|ADH1_ORYSI Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/378 (77%), Positives = 341/378 (90%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
+TAG ++ CKAAVAWEA KPL+I++VEVAPPQAMEVR+KI +TSLC TD+YFWE+KGQTP
Sbjct: 2 ATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTP 61
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
+FPRIFGHEA G+VESVGEGV+DL GDHVLPVFTGEC +C HC+S SNMCDLLRIN
Sbjct: 62 VFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTD 121
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
RGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+ST
Sbjct: 122 RGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGIST 181
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
GLGAT+NVAKP +GS+VA+FGLGAVGLAAAEGARIAGASRIIG+D ++ RFEEA+KFG T
Sbjct: 182 GLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCT 241
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+FVN +HD+P+Q+V+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KD
Sbjct: 242 EFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKD 301
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
A F T P+N LNERTLKGTFFGNYKPRTDLP+VV++YM K+LE+EKFITH +PFSEIN A
Sbjct: 302 AEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTA 361
Query: 363 FEYMVKGEGLRCIISMED 380
F+ M KGEG+RCII ME+
Sbjct: 362 FDLMHKGEGIRCIIRMEN 379
|
Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | ||||||
| 224093368 | 380 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.814 | 0.0 | |
| 118487636 | 380 | unknown [Populus trichocarpa] | 0.994 | 0.994 | 0.814 | 0.0 | |
| 224093370 | 380 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.812 | 0.0 | |
| 359477028 | 415 | PREDICTED: alcohol dehydrogenase 1 [Viti | 0.997 | 0.913 | 0.799 | 0.0 | |
| 225431501 | 380 | PREDICTED: alcohol dehydrogenase 1 [Viti | 0.994 | 0.994 | 0.804 | 0.0 | |
| 295148815 | 380 | alcohol dehydrogenase I [Vitis aestivali | 0.997 | 0.997 | 0.802 | 0.0 | |
| 342851389 | 380 | alcohol dehydrogenase [Pyrus communis] | 1.0 | 1.0 | 0.797 | 0.0 | |
| 296088562 | 380 | unnamed protein product [Vitis vinifera] | 0.997 | 0.997 | 0.799 | 0.0 | |
| 9885274 | 380 | alcohol dehydrogenase 2 [Vitis vinifera] | 0.997 | 0.997 | 0.794 | 0.0 | |
| 356508983 | 381 | PREDICTED: alcohol dehydrogenase-like [G | 0.997 | 0.994 | 0.810 | 0.0 |
| >gi|224093368|ref|XP_002309899.1| predicted protein [Populus trichocarpa] gi|222852802|gb|EEE90349.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/378 (81%), Positives = 349/378 (92%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSSTAG ++ CKAAVAWEAGKPL++++VEVAPPQAMEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSSTAGQVIRCKAAVAWEAGKPLVMEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML DG+SRFSI G+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLNDGKSRFSIKGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP++GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD +S RF+EAKKFG
Sbjct: 181 STGLGATLNVAKPKKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNSNRFDEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +H++P+QEVIAEMTNGGVDRSVECTG+I+ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSINAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+NVLNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PFSEIN
Sbjct: 301 KDDSFKTHPMNVLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISM 378
KAFEYM+ G GLRCII M
Sbjct: 361 KAFEYMLSGAGLRCIIRM 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487636|gb|ABK95643.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/378 (81%), Positives = 349/378 (92%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSSTAG ++ CKAAVAWEAGKPL+I++VEVAPPQAMEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSSTAGQVICCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML DG+SRFSI G+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLNDGKSRFSIRGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP++GSSVA+FGLGAVGLAAAEGARIAGASRIIGVD +S RF+EAKKFG
Sbjct: 181 STGLGATLNVAKPKKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNSNRFDEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +H++P+QEVIAEMTNGGVDRSVECTG+++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSVNAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+NVLNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PFSEIN
Sbjct: 301 KDDSFKTHPMNVLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISM 378
KAFEYM+ G GLRCII M
Sbjct: 361 KAFEYMLSGAGLRCIIRM 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093370|ref|XP_002309900.1| predicted protein [Populus trichocarpa] gi|222852803|gb|EEE90350.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/378 (81%), Positives = 349/378 (92%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSSTAG ++ CKAAVAWEAGKPL+I++VEVAPPQAMEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSSTAGQVICCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML DG+SRFSI G+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLNDGKSRFSIRGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP++GSS+A+FGLGAVGLAAAEGARIAGASRIIGVD +S RF+EAKKFG
Sbjct: 181 STGLGATLNVAKPKKGSSIAIFGLGAVGLAAAEGARIAGASRIIGVDLNSNRFDEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +H++P+QEVIAEMTNGGVDRSVECTG+++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSVNAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+NVLNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PFSEIN
Sbjct: 301 KDDSFKTHPMNVLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISM 378
KAFEYM+ G GLRCII M
Sbjct: 361 KAFEYMLSGAGLRCIIRM 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477028|ref|XP_002281349.2| PREDICTED: alcohol dehydrogenase 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/379 (79%), Positives = 348/379 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS TAG ++ CKAAVAWEAGKPL+I++VEVAPPQ MEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 36 MSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQ 95
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 96 TPLFPRIFGHEAGGIVESVGEGVTDLQSGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 155
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+D +SRFSING+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 156 TDRGVMLSDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 215
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIG+D + KRF +AKKFG
Sbjct: 216 STGLGATLNVAKPWKGSSVAIFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFNDAKKFG 275
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +HD+P+QEVIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 276 VTEFVNPKDHDKPVQEVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPN 335
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+N+LNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 336 KDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFAEIN 395
Query: 361 KAFEYMVKGEGLRCIISME 379
KAFEYM+ G+GLRCII M+
Sbjct: 396 KAFEYMLSGDGLRCIIRMD 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431501|ref|XP_002281334.1| PREDICTED: alcohol dehydrogenase 1 [Vitis vinifera] gi|296088563|emb|CBI37554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/378 (80%), Positives = 348/378 (92%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSSTAG ++ CKAAVAWEAGKPL+I++VEVAPPQ MEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSSTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+D +SRFSING+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLSDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIG+D + KRF +AKKFG
Sbjct: 181 STGLGATLNVAKPWKGSSVAIFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFNDAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +HD+P+QEVIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFVNPKDHDKPVQEVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+N+LNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISM 378
KAFEYM+ G+GLRCII M
Sbjct: 361 KAFEYMLSGDGLRCIIRM 378
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295148815|gb|ADF80905.1| alcohol dehydrogenase I [Vitis aestivalis] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/379 (80%), Positives = 348/379 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS TAG ++ CKAAVAWEAGKPL+I++VEVAPPQAMEVR+KI YTSLC TD+YFWE+KGQ
Sbjct: 1 MSGTAGQVICCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILYTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLP+FTGEC DC HC+S+ SN+CDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPIFTGECKDCAHCKSEESNLCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVM+ DG+SRF+I G+P+ HFLGTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMIHDGKSRFTIKGKPIYHFLGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GS+VAVFGLGAVGLAAAEGARIAGASRIIGVD + KR+EEAKKFG
Sbjct: 181 STGLGATLNVAKPTKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPKRYEEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VTDFVN +H++ +QEVI EMT GGVDRS+ECTGN++ MISAFECVHDGWGVAV+VGVP+
Sbjct: 241 VTDFVNPKDHEKSVQEVIVEMTGGGVDRSLECTGNVNAMISAFECVHDGWGVAVIVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD VF T PIN+LNERTLKGTFFGNYKPR+D+P+VV+ YMNK+LE+EKFITH +PFSEIN
Sbjct: 301 KDDVFKTHPINLLNERTLKGTFFGNYKPRSDIPAVVEKYMNKELEVEKFITHSVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISME 379
KAFEYM+KGEGLRCII ME
Sbjct: 361 KAFEYMLKGEGLRCIIHME 379
|
Source: Vitis aestivalis Species: Vitis aestivalis Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|342851389|gb|AEL75211.1| alcohol dehydrogenase [Pyrus communis] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/380 (79%), Positives = 349/380 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS+TAG ++ C+AAVAWEAGKPL+I++VEVAPPQA EVRIKI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
PLFPRI+GHEA G+VESVGEGV DL+ GDHVLPVFTGEC DC HC+S+ SNMCDLLRIN
Sbjct: 61 NPLFPRIYGHEAGGIVESVGEGVMDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+DG+SRFSI G+P+ HF+GTSTFSEYTVVH GC+AKINPLAPLDKVC+LSCG+
Sbjct: 121 TDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPLAPLDKVCLLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGL ATLNVAKP++GS+VAVFGLGAVGLAAAEGAR++GASRIIGVD S RFEEAKKFG
Sbjct: 181 STGLEATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSGRFEEAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN EH +P+QEVIAE+TNGGVDRS+ECTG+++ MISAFECVHDGWGVAVLVGVP
Sbjct: 241 VTEFVNPKEHKKPVQEVIAELTNGGVDRSIECTGSVEAMISAFECVHDGWGVAVLVGVPH 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
K+AVF T P+N LNERTLKGTFFGNYKPRTD+PSVV+ YMNK+L+LEKFITH++PFSEIN
Sbjct: 301 KEAVFKTHPVNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELQLEKFITHKVPFSEIN 360
Query: 361 KAFEYMVKGEGLRCIISMED 380
KAFEYM+KGEGLRCII ME+
Sbjct: 361 KAFEYMLKGEGLRCIIHMEE 380
|
Source: Pyrus communis Species: Pyrus communis Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088562|emb|CBI37553.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/379 (79%), Positives = 348/379 (91%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MS TAG ++ CKAAVAWEAGKPL+I++VEVAPPQ MEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLQSGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+D +SRFSING+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLSDNKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSSVA+FGLGAVGLAAAEGARIAGASRIIG+D + KRF +AKKFG
Sbjct: 181 STGLGATLNVAKPWKGSSVAIFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFNDAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+FVN +HD+P+QEVIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFVNPKDHDKPVQEVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+N+LNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LELEKFITH +PF+EIN
Sbjct: 301 KDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISME 379
KAFEYM+ G+GLRCII M+
Sbjct: 361 KAFEYMLSGDGLRCIIRMD 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9885274|gb|AAG01382.1|AF194174_1 alcohol dehydrogenase 2 [Vitis vinifera] gi|18027092|gb|AAL55726.1|AF271074_1 alcohol dehydrogenase 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 349/379 (92%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
MSSTAG ++ CKAAVAWEAGKPL+I++VEVAPPQ MEVR+KI +TSLC TD+YFWE+KGQ
Sbjct: 1 MSSTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQVMEVRLKILFTSLCHTDVYFWEAKGQ 60
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
TPLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN
Sbjct: 61 TPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECRHCKSEESNMCDLLRIN 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
RGVML+D +SRFSING+PV HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+
Sbjct: 121 TDRGVMLSDNKSRFSINGKPVYHFVGTSTFSEYTVIHVGCVAKINPAAPLDKVCVLSCGI 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
STGLGATLNVAKP +GSS+A+FGLGAVGLAAAEGARIAGA+RIIG+D + KRF +AKKFG
Sbjct: 181 STGLGATLNVAKPSKGSSIAIFGLGAVGLAAAEGARIAGAARIIGIDLNPKRFNDAKKFG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
VT+F+N +HD+PIQEVIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+
Sbjct: 241 VTEFLNPKDHDKPIQEVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPN 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
KD F T P+N+LNERTLKGTFFGNYKPR+DLPSVV+ YMNK+LE+EKFITH +PF+EIN
Sbjct: 301 KDDSFKTHPVNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHEVPFAEIN 360
Query: 361 KAFEYMVKGEGLRCIISME 379
KAFEYM+ G+GLRCII M+
Sbjct: 361 KAFEYMLSGDGLRCIIRMD 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508983|ref|XP_003523232.1| PREDICTED: alcohol dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/379 (81%), Positives = 347/379 (91%)
Query: 2 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT 61
S+TAG ++ CKAAVAWEAGKPL+I++VEVAPPQA EVRIKI +TSLC TD+YFWE+KGQT
Sbjct: 3 STTAGKVIRCKAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQT 62
Query: 62 PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP 121
PLFPRIFGHEA G+VESVGEGV+DL+ GDHVLPVFTGEC +C HC+S+ SNMCDLLRIN
Sbjct: 63 PLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECKECDHCKSEESNMCDLLRINT 122
Query: 122 VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVS 181
RGVML DG++RFSING+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCG+S
Sbjct: 123 DRGVMLNDGKARFSINGQPIYHFVGTSTFSEYTVVHVGCVAKINPAAPLDKVCVLSCGIS 182
Query: 182 TGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241
TGLGATLNVAKP +GSSVAVFGLGAVGLAAAEGAR+AGASRIIGVD +SKRF EAKKFGV
Sbjct: 183 TGLGATLNVAKPNKGSSVAVFGLGAVGLAAAEGARLAGASRIIGVDLNSKRFTEAKKFGV 242
Query: 242 TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301
T+FVN ++D+P+QEVIAEMT GGVDRSVECTG+I+ MISAFECVHDGWGVAVLVGVP+K
Sbjct: 243 TEFVNPKDYDKPVQEVIAEMTGGGVDRSVECTGSINAMISAFECVHDGWGVAVLVGVPNK 302
Query: 302 DAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINK 361
D F T PINVLNE+TLKGTFFGNYKPR+DLPSVV+MYMNK+LELEKFITH +PF EINK
Sbjct: 303 DDAFKTHPINVLNEKTLKGTFFGNYKPRSDLPSVVEMYMNKELELEKFITHEVPFEEINK 362
Query: 362 AFEYMVKGEGLRCIISMED 380
AFEYM+KGE LRCII M +
Sbjct: 363 AFEYMLKGESLRCIIRMTE 381
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | ||||||
| TAIR|locus:2025237 | 379 | ADH1 "alcohol dehydrogenase 1" | 0.989 | 0.992 | 0.678 | 3.9e-140 | |
| TAIR|locus:2184575 | 381 | AT5G24760 [Arabidopsis thalian | 0.963 | 0.960 | 0.462 | 4.6e-89 | |
| ZFIN|ZDB-GENE-011003-1 | 376 | adh5 "alcohol dehydrogenase 5" | 0.978 | 0.989 | 0.420 | 5e-83 | |
| UNIPROTKB|F1S0C1 | 374 | ADH5 "Uncharacterized protein" | 0.981 | 0.997 | 0.422 | 1.5e-81 | |
| UNIPROTKB|P11766 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.981 | 0.997 | 0.422 | 2.5e-81 | |
| UNIPROTKB|Q3ZC42 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.981 | 0.997 | 0.414 | 1.1e-80 | |
| RGD|2292706 | 374 | Adh5 "alcohol dehydrogenase 5 | 0.981 | 0.997 | 0.419 | 1.4e-80 | |
| UNIPROTKB|P12711 | 374 | Adh5 "Alcohol dehydrogenase cl | 0.981 | 0.997 | 0.419 | 1.4e-80 | |
| UNIPROTKB|F1NKS5 | 374 | ADH5 "Uncharacterized protein" | 0.968 | 0.983 | 0.409 | 1.6e-79 | |
| UNIPROTKB|J9PA83 | 374 | ADH5 "Uncharacterized protein" | 0.981 | 0.997 | 0.409 | 1.6e-79 |
| TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
Identities = 255/376 (67%), Positives = 294/376 (78%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
ST G I+ CKAAVAWEAGKPL+I++VEVAPPQ EVRIKI +TSLC TD+YFWE+KGQTP
Sbjct: 2 STTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTP 61
Query: 63 LFPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
LFPRIFGH HVLP+FTGECG+CRHC S+ SNMCDLLRIN
Sbjct: 62 LFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTE 121
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
RG M+ DG+SRFSING+P+ HFLGTSTFSEYTVVHSG VAKINP APLDKVCI+SCG+ST
Sbjct: 122 RGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181
Query: 183 GLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVT 242
GLGATLNVAKP++ VD +SKRF++AK+FGVT
Sbjct: 182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVT 241
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+ VN +HD+PIQ+VIAEMT+GGVDRSVECTG++ MI AFECVHDGWGVAVLVGVPSKD
Sbjct: 242 ECVNPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKD 301
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
F T P+N LNERTLKGTFFGNYKP+TD+P VV+ YMNK+LELEKFITH +PFSEINKA
Sbjct: 302 DAFKTHPMNFLNERTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKA 361
Query: 363 FEYMVKGEGLRCIISM 378
F+YM+KGE +RCII+M
Sbjct: 362 FDYMLKGESIRCIITM 377
|
|
| TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 172/372 (46%), Positives = 235/372 (63%)
Query: 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRI 67
++TC AAVAW AG+PL++++VEV+PPQ +E+RIK+ TSLCR+DL WES+ L PRI
Sbjct: 13 VITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQS---LLPRI 69
Query: 68 FGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
FGH HVL VFTGECG CRHC S SNMC +L + +G+M
Sbjct: 70 FGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMER-KGLMH 128
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
+D ++RFSI G+PV H+ S+FSEYTVVHSGC K++PLAPL K+C+LSCGV+ GLGA
Sbjct: 129 SDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAA 188
Query: 188 LNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNT 247
NVA ++ VD + + E+AK FGVTDF+N+
Sbjct: 189 WNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINS 248
Query: 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP-SKDAVFM 306
++ PI +VI MT GG D S EC G+ +A + DGWG+ V +GVP +K V
Sbjct: 249 NDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVSA 308
Query: 307 TKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
+ L+ ++LKGT FG +KP++DLPS++D YMNK++ +++FITH + F EINKAF M
Sbjct: 309 HYGL-FLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLM 367
Query: 367 VKGEGLRCIISM 378
+G+ LRC++ M
Sbjct: 368 REGKCLRCVLHM 379
|
|
| ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 157/373 (42%), Positives = 223/373 (59%)
Query: 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
T G ++ CKAAVAWEAGKPL I++VEVAPP+A EVR+KI T +C TD Y L
Sbjct: 3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGL 62
Query: 64 FPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
FP I GH V+P++ +CG+C+ C++ +N+C +R+ +
Sbjct: 63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
G+M D SRF+ G+ + HF+GTSTFSEYTVV +AK++ APLDKVC+L CG+STG
Sbjct: 123 GLM-PDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTG 181
Query: 184 LGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTD 243
GA +N AK E +D + +FE AKKFG T+
Sbjct: 182 YGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATE 241
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
FVN +H +PIQEV+ E+T+GGVD S EC GN+ M +A E H GWG +V++GV
Sbjct: 242 FVNPKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQ 301
Query: 304 VFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
T+P ++ RT KGT FG +K +P +V+ YMNK+L +++F+TH +PF++IN+AF
Sbjct: 302 EISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINEAF 361
Query: 364 EYMVKGEGLRCII 376
+ M G+ +R ++
Sbjct: 362 DLMHAGKSIRAVL 374
|
|
| UNIPROTKB|F1S0C1 ADH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 158/374 (42%), Positives = 223/374 (59%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPP+A EVRIKI T++C TD Y F
Sbjct: 2 ANQVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSF 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PLAPLDKVC+L CGVSTG
Sbjct: 122 LM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA +N AK E VD + +F AK+FG ++
Sbjct: 181 GAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGASEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H GWGV+V+VGV +
Sbjct: 241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+TH +PF +IN+AFE
Sbjct: 301 IATRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHNLPFDQINEAFE 360
Query: 365 YMVKGEGLRCIISM 378
M G+ +R +I +
Sbjct: 361 LMHAGKSIRTVIKL 374
|
|
| UNIPROTKB|P11766 ADH5 "Alcohol dehydrogenase class-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 158/374 (42%), Positives = 222/374 (59%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPP+A EVRIKI T++C TD Y F
Sbjct: 2 ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PLAPLDKVC+L CG+STG
Sbjct: 122 LM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA +N AK E VD + +F AK+FG T+
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H GWGV+V+VGV +
Sbjct: 241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+TH + F EINKAFE
Sbjct: 301 IATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFE 360
Query: 365 YMVKGEGLRCIISM 378
M G+ +R ++ +
Sbjct: 361 LMHSGKSIRTVVKI 374
|
|
| UNIPROTKB|Q3ZC42 ADH5 "Alcohol dehydrogenase class-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 155/374 (41%), Positives = 223/374 (59%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I++VEVAPP+A EVRIKI T++C TD Y +
Sbjct: 2 ANQVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNY 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PLAPLDKVC+L CG+STG
Sbjct: 122 LM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA LN AK E VD + +F AK+FG ++
Sbjct: 181 GAALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H GWG++V+VGV +
Sbjct: 241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+TH +PF +IN+AF+
Sbjct: 301 IATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFD 360
Query: 365 YMVKGEGLRCIISM 378
M G+ +R ++ +
Sbjct: 361 LMHAGKSIRTVVKL 374
|
|
| RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 157/374 (41%), Positives = 220/374 (58%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPPQA EVRIKI T++C TD Y F
Sbjct: 2 ANQVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+P+ HF+GTSTFSEYTVV VAKI+P APLDKVC+L CG+STG
Sbjct: 122 LM-PDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA +N AK E +D + +F +AK+FG T+
Sbjct: 181 GAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + + IQEV+ EMT+GGVD S EC GN+ M SA E H GWGV+V+VGV +
Sbjct: 241 INPQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+T + F +INKAF+
Sbjct: 301 ISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFD 360
Query: 365 YMVKGEGLRCIISM 378
M G +R ++ M
Sbjct: 361 LMHSGNSIRTVLKM 374
|
|
| UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 157/374 (41%), Positives = 220/374 (58%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPPQA EVRIKI T++C TD Y F
Sbjct: 2 ANQVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+P+ HF+GTSTFSEYTVV VAKI+P APLDKVC+L CG+STG
Sbjct: 122 LM-PDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA +N AK E +D + +F +AK+FG T+
Sbjct: 181 GAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + + IQEV+ EMT+GGVD S EC GN+ M SA E H GWGV+V+VGV +
Sbjct: 241 INPQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+T + F +INKAF+
Sbjct: 301 ISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFD 360
Query: 365 YMVKGEGLRCIISM 378
M G +R ++ M
Sbjct: 361 LMHSGNSIRTVLKM 374
|
|
| UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 151/369 (40%), Positives = 221/369 (59%)
Query: 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRI 67
++ CKAAVAWEAGKPL I++VEVAPP+A EVRIKI T+LC TD Y FP I
Sbjct: 5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64
Query: 68 FGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GH V+P++ +CG+C++C++ +N+C +R+ +G+M
Sbjct: 65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKGLM- 123
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
DG RF+ G+ + HF+GTSTFSEYTVV VAKI+P AP DKVC+L CG+STG GA
Sbjct: 124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183
Query: 188 LNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNT 247
+N AK E +D + + +AK+FG + ++
Sbjct: 184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 243
Query: 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
+ ++PIQEV+ EMT+GGVD S EC GN+ M +A E H GWGV+V+VGV + T
Sbjct: 244 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIST 303
Query: 308 KPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMV 367
+P ++ RT KGT FG +K +P +V+ YM K++++++F+TH +PF +IN+AF+ +
Sbjct: 304 RPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDLLH 363
Query: 368 KGEGLRCII 376
KG+ +R ++
Sbjct: 364 KGKSIRTVL 372
|
|
| UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 153/374 (40%), Positives = 221/374 (59%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I++VEVAPP+A EVRIKI T++C TD Y F
Sbjct: 2 ANQVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSF 61
Query: 65 PRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PLAPLDKVC+L CG+STG
Sbjct: 122 LM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 185 GATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDF 244
GA LN AK E VD + +F AK+FG ++
Sbjct: 181 GAALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASEC 240
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H GWGV+V+VGV +
Sbjct: 241 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEE 300
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ R KGT FG +K +P +V YM++++++++F+TH + F +IN+AF+
Sbjct: 301 IATRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFD 360
Query: 365 YMVKGEGLRCIISM 378
+ G+ +R ++ +
Sbjct: 361 LLHAGKSIRTVVKL 374
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2R8Z5 | ADH1_ORYSJ | 1, ., 1, ., 1, ., 1 | 0.7751 | 0.9947 | 0.9973 | yes | no |
| P80467 | ADHX_UROHA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5121 | 0.9736 | 0.9919 | N/A | no |
| O19053 | ADHX_RABIT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5053 | 0.9815 | 0.9973 | yes | no |
| P06525 | ADH1_ARATH | 1, ., 1, ., 1, ., 1 | 0.7898 | 0.9894 | 0.9920 | yes | no |
| P19854 | ADHX_HORSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5094 | 0.9736 | 0.9893 | yes | no |
| P14674 | ADH2_SOLTU | 1, ., 1, ., 1, ., 1 | 0.7921 | 1.0 | 1.0 | N/A | no |
| P14675 | ADH3_SOLTU | 1, ., 1, ., 1, ., 1 | 0.7921 | 1.0 | 1.0 | N/A | no |
| A2XAZ3 | ADHX_ORYSI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5661 | 0.9947 | 0.9921 | N/A | no |
| P14673 | ADH1_SOLTU | 1, ., 1, ., 1, ., 1 | 0.7921 | 1.0 | 1.0 | N/A | no |
| P12711 | ADHX_RAT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5133 | 0.9815 | 0.9973 | yes | no |
| P86884 | ADHX_SCYCA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5013 | 0.9894 | 1.0 | N/A | no |
| P28032 | ADH2_SOLLC | 1, ., 1, ., 1, ., 1 | 0.7868 | 1.0 | 1.0 | N/A | no |
| P93629 | ADHX_MAIZE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5582 | 0.9947 | 0.9921 | N/A | no |
| P48977 | ADH_MALDO | 1, ., 1, ., 1, ., 1 | 0.7947 | 1.0 | 1.0 | N/A | no |
| P00333 | ADH1_MAIZE | 1, ., 1, ., 1, ., 1 | 0.7777 | 0.9947 | 0.9973 | N/A | no |
| P00327 | ADH1E_HORSE | 1, ., 1, ., 1, ., 1 | 0.4840 | 0.9842 | 0.9973 | yes | no |
| P80572 | ADHX_PEA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5529 | 0.9947 | 1.0 | N/A | no |
| Q4R1E8 | ADH2_ORYSI | 1, ., 1, ., 1, ., 1 | 0.7380 | 0.9947 | 0.9973 | N/A | no |
| Q17335 | ADHX_CAEEL | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4778 | 0.9947 | 0.9843 | yes | no |
| Q3ZC42 | ADHX_BOVIN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5053 | 0.9815 | 0.9973 | yes | no |
| P46415 | ADHX_DROME | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4920 | 0.9868 | 0.9894 | yes | no |
| P11766 | ADHX_HUMAN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5160 | 0.9815 | 0.9973 | yes | no |
| P25141 | ADH1_PETHY | 1, ., 1, ., 1, ., 1 | 0.7757 | 0.9947 | 0.9895 | N/A | no |
| P05336 | ADH1_HORVU | 1, ., 1, ., 1, ., 1 | 0.7566 | 0.9947 | 0.9973 | N/A | no |
| P79896 | ADHX_SPAAU | 1, ., 1, ., 1, ., 2, 8, 4 | 0.512 | 0.9842 | 0.9946 | N/A | no |
| P81600 | ADHH_GADMO | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5026 | 0.9868 | 1.0 | N/A | no |
| P12886 | ADH1_PEA | 1, ., 1, ., 1, ., 1 | 0.7842 | 1.0 | 1.0 | N/A | no |
| P13603 | ADH1_TRIRP | 1, ., 1, ., 1, ., 1 | 0.7710 | 1.0 | 1.0 | N/A | no |
| P17648 | ADH_FRAAN | 1, ., 1, ., 1, ., 1 | 0.7763 | 1.0 | 1.0 | N/A | no |
| P04707 | ADH2_MAIZE | 1, ., 1, ., 1, ., 1 | 0.7539 | 0.9947 | 0.9973 | N/A | no |
| P14219 | ADH1_PENAM | 1, ., 1, ., 1, ., 1 | 0.7777 | 0.9947 | 0.9973 | N/A | no |
| P28474 | ADHX_MOUSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.5026 | 0.9815 | 0.9973 | yes | no |
| Q54TC2 | ADHX_DICDI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.4828 | 0.9868 | 0.9894 | yes | no |
| P26325 | ADH1_GADMC | 1, ., 1, ., 1, ., 1 | 0.5013 | 0.9868 | 1.0 | N/A | no |
| Q0ITW7 | ADH2_ORYSJ | 1, ., 1, ., 1, ., 1 | 0.7380 | 0.9947 | 0.9973 | no | no |
| Q75ZX4 | ADH1_ORYSI | 1, ., 1, ., 1, ., 1 | 0.7751 | 0.9947 | 0.9973 | N/A | no |
| P10847 | ADH2_HORVU | 1, ., 1, ., 1, ., 1 | 0.7195 | 0.9789 | 0.9973 | N/A | no |
| Q07264 | ADH1_ZEALU | 1, ., 1, ., 1, ., 1 | 0.7773 | 0.7684 | 0.9965 | N/A | no |
| P10848 | ADH3_HORVU | 1, ., 1, ., 1, ., 1 | 0.7613 | 0.9815 | 0.9841 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.983 |
| 4th Layer | 1.1.1.1 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 380 | |||
| cd08301 | 369 | cd08301, alcohol_DH_plants, Plant alcohol dehydrog | 0.0 | |
| cd08277 | 365 | cd08277, liver_alcohol_DH_like, Liver alcohol dehy | 0.0 | |
| cd08300 | 368 | cd08300, alcohol_DH_class_III, class III alcohol d | 0.0 | |
| PLN02740 | 381 | PLN02740, PLN02740, Alcohol dehydrogenase-like | 1e-176 | |
| PLN02827 | 378 | PLN02827, PLN02827, Alcohol dehydrogenase-like | 1e-170 | |
| cd08299 | 373 | cd08299, alcohol_DH_class_I_II_IV, class I, II, IV | 1e-163 | |
| COG1062 | 366 | COG1062, AdhC, Zn-dependent alcohol dehydrogenases | 1e-158 | |
| TIGR02818 | 368 | TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat | 1e-152 | |
| cd05279 | 365 | cd05279, Zn_ADH1, Liver alcohol dehydrogenase and | 1e-150 | |
| cd08279 | 363 | cd08279, Zn_ADH_class_III, Class III alcohol dehyd | 1e-129 | |
| cd08278 | 365 | cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro | 1e-102 | |
| cd08281 | 371 | cd08281, liver_ADH_like1, Zinc-dependent alcohol d | 1e-97 | |
| TIGR03989 | 369 | TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa | 4e-88 | |
| TIGR03451 | 358 | TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi | 2e-78 | |
| cd08263 | 367 | cd08263, Zn_ADH10, Alcohol dehydrogenases of the M | 2e-73 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 7e-62 | |
| COG1064 | 339 | COG1064, AdhP, Zn-dependent alcohol dehydrogenases | 3e-59 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 1e-58 | |
| cd08236 | 343 | cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog | 5e-55 | |
| cd08234 | 334 | cd08234, threonine_DH_like, L-threonine dehydrogen | 8e-55 | |
| cd08233 | 351 | cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio | 3e-53 | |
| cd08261 | 337 | cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD | 5e-52 | |
| cd08235 | 343 | cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas | 1e-51 | |
| cd08260 | 345 | cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD | 2e-49 | |
| cd05285 | 343 | cd05285, sorbitol_DH, Sorbitol dehydrogenase | 3e-49 | |
| cd05278 | 347 | cd05278, FDH_like, Formaldehyde dehydrogenases | 3e-48 | |
| cd08231 | 361 | cd08231, MDR_TM0436_like, Hypothetical enzyme TM04 | 3e-48 | |
| cd08239 | 339 | cd08239, THR_DH_like, L-threonine dehydrogenase (T | 9e-47 | |
| cd08254 | 338 | cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e | 1e-46 | |
| cd05281 | 341 | cd05281, TDH, Threonine dehydrogenase | 4e-43 | |
| cd08297 | 341 | cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA | 1e-42 | |
| cd05284 | 340 | cd05284, arabinose_DH_like, D-arabinose dehydrogen | 7e-42 | |
| cd08283 | 386 | cd08283, FDH_like_1, Glutathione-dependent formald | 3e-41 | |
| cd08284 | 344 | cd08284, FDH_like_2, Glutathione-dependent formald | 8e-41 | |
| cd08285 | 351 | cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd | 2e-40 | |
| cd08245 | 330 | cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD | 7e-40 | |
| cd08259 | 332 | cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD | 1e-37 | |
| cd08240 | 350 | cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa | 3e-37 | |
| cd08286 | 345 | cd08286, FDH_like_ADH2, formaldehyde dehydrogenase | 5e-35 | |
| PRK05396 | 341 | PRK05396, tdh, L-threonine 3-dehydrogenase; Valida | 8e-35 | |
| TIGR00692 | 340 | TIGR00692, tdh, L-threonine 3-dehydrogenase | 5e-34 | |
| cd08258 | 306 | cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD | 2e-33 | |
| cd08282 | 375 | cd08282, PFDH_like, Pseudomonas putida aldehyde-di | 4e-32 | |
| cd08287 | 345 | cd08287, FDH_like_ADH3, formaldehyde dehydrogenase | 2e-31 | |
| cd08232 | 339 | cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | 6e-31 | |
| cd08265 | 384 | cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD | 1e-30 | |
| cd05283 | 337 | cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA | 2e-29 | |
| cd08298 | 329 | cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA | 1e-28 | |
| cd08269 | 312 | cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD | 1e-28 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 5e-27 | |
| pfam00107 | 131 | pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | 6e-27 | |
| pfam08240 | 108 | pfam08240, ADH_N, Alcohol dehydrogenase GroES-like | 9e-27 | |
| cd08296 | 333 | cd08296, CAD_like, Cinnamyl alcohol dehydrogenases | 1e-25 | |
| cd08266 | 342 | cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t | 3e-24 | |
| PRK13771 | 334 | PRK13771, PRK13771, putative alcohol dehydrogenase | 6e-24 | |
| PLN02702 | 364 | PLN02702, PLN02702, L-idonate 5-dehydrogenase | 1e-23 | |
| TIGR03366 | 280 | TIGR03366, HpnZ_proposed, putative phosphonate cat | 1e-23 | |
| PRK10083 | 339 | PRK10083, PRK10083, putative oxidoreductase; Provi | 2e-23 | |
| cd05289 | 309 | cd05289, MDR_like_2, alcohol dehydrogenase and qui | 1e-22 | |
| cd08255 | 277 | cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro | 9e-22 | |
| cd08249 | 339 | cd08249, enoyl_reductase_like, enoyl_reductase_lik | 3e-21 | |
| cd08268 | 328 | cd08268, MDR2, Medium chain dehydrogenases/reducta | 1e-20 | |
| cd08256 | 350 | cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD | 2e-20 | |
| PRK09422 | 338 | PRK09422, PRK09422, ethanol-active dehydrogenase/a | 2e-19 | |
| cd08276 | 336 | cd08276, MDR7, Medium chain dehydrogenases/reducta | 1e-18 | |
| TIGR03201 | 349 | TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1 | 1e-18 | |
| PRK10309 | 347 | PRK10309, PRK10309, galactitol-1-phosphate dehydro | 9e-17 | |
| cd08253 | 325 | cd08253, zeta_crystallin, Zeta-crystallin with NAD | 4e-16 | |
| cd08241 | 323 | cd08241, QOR1, Quinone oxidoreductase (QOR) | 1e-15 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 2e-15 | |
| cd08230 | 355 | cd08230, glucose_DH, Glucose dehydrogenase | 5e-15 | |
| PLN02514 | 357 | PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | 9e-15 | |
| cd08242 | 319 | cd08242, MDR_like, Medium chain dehydrogenases/red | 1e-14 | |
| cd08271 | 325 | cd08271, MDR5, Medium chain dehydrogenases/reducta | 3e-14 | |
| cd08262 | 341 | cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD | 8e-14 | |
| TIGR02819 | 393 | TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas | 1e-13 | |
| cd05286 | 320 | cd05286, QOR2, Quinone oxidoreductase (QOR) | 1e-13 | |
| cd08264 | 325 | cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t | 2e-12 | |
| PLN02586 | 360 | PLN02586, PLN02586, probable cinnamyl alcohol dehy | 9e-12 | |
| cd08243 | 320 | cd08243, quinone_oxidoreductase_like_1, Quinone ox | 3e-11 | |
| PLN02178 | 375 | PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | 3e-11 | |
| cd05195 | 293 | cd05195, enoyl_red, enoyl reductase of polyketide | 1e-09 | |
| cd08272 | 326 | cd08272, MDR6, Medium chain dehydrogenases/reducta | 2e-09 | |
| PTZ00354 | 334 | PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi | 4e-09 | |
| PRK09880 | 343 | PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro | 7e-09 | |
| TIGR02822 | 329 | TIGR02822, adh_fam_2, zinc-binding alcohol dehydro | 2e-08 | |
| cd05282 | 323 | cd05282, ETR_like, 2-enoyl thioester reductase-lik | 3e-08 | |
| cd08292 | 324 | cd08292, ETR_like_2, 2-enoyl thioester reductase ( | 7e-08 | |
| cd08251 | 303 | cd08251, polyketide_synthase, polyketide synthase | 1e-07 | |
| cd08275 | 337 | cd08275, MDR3, Medium chain dehydrogenases/reducta | 2e-07 | |
| cd08247 | 352 | cd08247, AST1_like, AST1 is a cytoplasmic protein | 3e-07 | |
| cd08250 | 329 | cd08250, Mgc45594_like, Mgc45594 gene product and | 6e-07 | |
| cd05276 | 323 | cd05276, p53_inducible_oxidoreductase, PIG3 p53-in | 8e-07 | |
| PRK10754 | 327 | PRK10754, PRK10754, quinone oxidoreductase, NADPH- | 2e-06 | |
| cd08252 | 336 | cd08252, AL_MDR, Arginate lyase and other MDR fami | 2e-06 | |
| cd08290 | 341 | cd08290, ETR, 2-enoyl thioester reductase (ETR) | 3e-06 | |
| cd08273 | 331 | cd08273, MDR8, Medium chain dehydrogenases/reducta | 1e-05 | |
| cd08274 | 350 | cd08274, MDR9, Medium chain dehydrogenases/reducta | 1e-05 | |
| smart00829 | 287 | smart00829, PKS_ER, Enoylreductase | 1e-05 | |
| TIGR02824 | 325 | TIGR02824, quinone_pig3, putative NAD(P)H quinone | 4e-05 | |
| cd08246 | 393 | cd08246, crotonyl_coA_red, crotonyl-CoA reductase | 3e-04 | |
| cd08248 | 350 | cd08248, RTN4I1, Human Reticulon 4 Interacting Pro | 3e-04 | |
| cd08291 | 324 | cd08291, ETR_like_1, 2-enoyl thioester reductase ( | 0.001 |
| >gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 722 bits (1867), Expect = 0.0
Identities = 287/368 (77%), Positives = 330/368 (89%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+TCKAAVAWEAGKPL+I++VEVAPPQAMEVRIKI +TSLC TD+YFWE+KGQTPLFPRI
Sbjct: 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
GHEAAG+VESVGEGV+DL+ GDHVLPVFTGEC +CRHC+S+ SNMCDLLRIN RGVM+
Sbjct: 61 GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
DG+SRFSING+P+ HF+GTSTFSEYTVVH GCVAKINP APLDKVC+LSCGVSTGLGA
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
NVAK ++GS+VA+FGLGAVGLA AEGARI GASRIIGVD + +FE+AKKFGVT+FVN
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240
Query: 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
+HD+P+QEVIAEMT GGVD S ECTGNID MISAFECVHDGWGV VL+GVP KDAVF T
Sbjct: 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTH 300
Query: 309 PINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
P+N+LN RTLKGT FG YKP+TDLP++V+ YM K+LELEKFITH +PFSEINKAF+ ++K
Sbjct: 301 PMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLK 360
Query: 369 GEGLRCII 376
GE LRCI+
Sbjct: 361 GECLRCIL 368
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369 |
| >gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 550 bits (1420), Expect = 0.0
Identities = 207/369 (56%), Positives = 267/369 (72%), Gaps = 4/369 (1%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+ CKAAVAWEAGKPL+I+++EVAPP+A EVRIK+ TS+C TD+ E T FP I
Sbjct: 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATL-FPVIL 59
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
GHE AG+VESVGEGV++L+ GD V+P+F G+CG+C +CRS +N+C R N ++
Sbjct: 60 GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANE--SGLMP 117
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
DG SRF+ G+ + HFLGTSTFS+YTVV VAKI+P APL+ VC+L CG STG GA
Sbjct: 118 DGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
N AK E GS+VAVFGLGAVGL+A GA+IAGASRIIGVD + +FE+AK+FG TDF+N
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237
Query: 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
+ D+P+ EVI EMT GGVD S ECTGN D M A E GWGV+V+VGVP + +
Sbjct: 238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL-SIR 296
Query: 309 PINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
P ++ RT KG+FFG +K R+D+P +V YMNK+ +L++ ITH +PF EINK F+ M
Sbjct: 297 PFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKS 356
Query: 369 GEGLRCIIS 377
GE +R +I+
Sbjct: 357 GECIRTVIT 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 529 bits (1364), Expect = 0.0
Identities = 204/368 (55%), Positives = 268/368 (72%), Gaps = 1/368 (0%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+TCKAAVAWEAGKPL I++VEVAPP+A EVRIKI T +C TD Y LFP I
Sbjct: 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
GHE AG+VESVGEGV+ ++ GDHV+P++T ECG+C+ C+S +N+C +R +G+M
Sbjct: 61 GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-P 119
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
DG SRFS G+P+ HF+GTSTFSEYTVV VAKINP APLDKVC+L CGV+TG GA L
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
N AK E GS+VAVFGLGAVGLA +GA+ AGASRIIG+D + +FE AKKFG TD VN
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239
Query: 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
+HD+PIQ+V+ EMT+GGVD + EC GN+ M +A E H GWG +V++GV + T+
Sbjct: 240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTR 299
Query: 309 PINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
P ++ R KGT FG +K R+ +P +V+ YM ++++++FITH +P EIN+AF+ M
Sbjct: 300 PFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHA 359
Query: 369 GEGLRCII 376
G+ +R ++
Sbjct: 360 GKSIRTVV 367
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368 |
| >gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 494 bits (1273), Expect = e-176
Identities = 200/381 (52%), Positives = 277/381 (72%), Gaps = 7/381 (1%)
Query: 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ 60
S T G ++TCKAAVAW G+PL+++++ V PPQ MEVRIKI YTS+C TDL W KG+
Sbjct: 1 ASETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAW--KGE 58
Query: 61 TPL---FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLL 117
+PRI GHEAAG+VESVGEGV DL+ GDHV+P+F GECGDCR+C+ D +N+C+
Sbjct: 59 NEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETY 118
Query: 118 RINPVRGVMLADGQSRFSI--NGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI 175
R++P + VM+ DG++RFS +G+P+ HFL TSTF+EYTV+ S CV KI+P APL K+ +
Sbjct: 119 RVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSL 178
Query: 176 LSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
LSCGVSTG+GA N A + GSSVA+FGLGAVGLA AEGAR GAS+IIGVD + ++FE+
Sbjct: 179 LSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK 238
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVL 295
K+ G+TDF+N + D+P+ E I EMT GGVD S EC GN++ + AF HDGWG+ VL
Sbjct: 239 GKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVL 298
Query: 296 VGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIP 355
+G+ + P+ + + R++ G+ FG++K ++ LP++ M + L+ FITH +P
Sbjct: 299 LGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELP 358
Query: 356 FSEINKAFEYMVKGEGLRCII 376
F +IN+AF+ + G+ LRC++
Sbjct: 359 FEKINEAFQLLEDGKALRCLL 379
|
Length = 381 |
| >gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 480 bits (1236), Expect = e-170
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 4/371 (1%)
Query: 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRI 67
++TC+AAVAW AG+ L++++VEV+PPQ +E+RIK+ TSLCR+DL WES+ LFPRI
Sbjct: 10 VITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPRI 66
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
FGHEA+G+VES+GEGV++ E GDHVL VFTGECG CRHC S SNMC +L + +GVM
Sbjct: 67 FGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER-KGVMH 125
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
+D ++RFSI G+PV H+ S+FSEYTVVHSGC K++PLAPL K+C+LSCGV+ GLGA
Sbjct: 126 SDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAA 185
Query: 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
NVA +GSSV +FGLG VGL+ A+GA++ GAS+IIGVD + ++ E+AK FGVTDF+N
Sbjct: 186 WNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP 245
Query: 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
++ PIQ+VI MT GG D S EC G+ +A + DGWG+ V +GVP
Sbjct: 246 NDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSA 305
Query: 308 KPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMV 367
L+ RTLKG+ FG +KP++DLPS+VD YMNK++ +++FITH + F EINKAFE M
Sbjct: 306 HYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMR 365
Query: 368 KGEGLRCIISM 378
+G+ LRC+I M
Sbjct: 366 EGKCLRCVIHM 376
|
Length = 378 |
| >gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-163
Identities = 185/375 (49%), Positives = 253/375 (67%), Gaps = 2/375 (0%)
Query: 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
TAG ++ CKAAV WE KP I+++EVAPP+A EVRIKI T +CR+D + K TP
Sbjct: 1 TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTP- 59
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
FP I GHEAAG+VESVGEGV+ ++ GD V+P+F +CG CR C + SN+C + +
Sbjct: 60 FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
G+M DG SRF+ G+P++HFLGTSTFSEYTVV VAKI+ APL+KVC++ CG STG
Sbjct: 120 GLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178
Query: 184 LGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243
GA +N AK GS+ AVFGLG VGL+A G + AGASRII VD + +F +AK+ G T+
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
+N ++ +PIQEV+ EMT+GGVD S E G +D M +A H+G+GV+V+VGVP
Sbjct: 239 CINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQ 298
Query: 304 VFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
P+ +L RT KG FG +K + +P +V YM K+ L+ ITH +PF +IN+ F
Sbjct: 299 NLSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGF 358
Query: 364 EYMVKGEGLRCIISM 378
+ + G+ +R +++
Sbjct: 359 DLLRSGKSIRTVLTF 373
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373 |
| >gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 449 bits (1157), Expect = e-158
Identities = 176/370 (47%), Positives = 245/370 (66%), Gaps = 4/370 (1%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+ +AAVA EAGKPL I++V++ PP+A EV ++I T +C TD + FP +
Sbjct: 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVL 59
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
GHE AG+VE+VGEGV+ ++ GDHV+ +FT ECG C+ C S N+C+ +R +G M
Sbjct: 60 GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP- 118
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
DG +R S NG PV H+LG STF+EYTVVH + KI+P APL+K C+L CGV+TG+GA +
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
N AK E G +VAVFGLG VGLAA +GA+ AGA RII VD + ++ E AKKFG T FVN
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238
Query: 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
E D + E I E+T+GG D + EC GN++ M A E H G +V++GV T+
Sbjct: 239 EVD-DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTR 296
Query: 309 PINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
P ++ R KG+ FG +PR+D+P +VD+YM +L L++ +TH IP +IN+AF+ M +
Sbjct: 297 PFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHE 356
Query: 369 GEGLRCIISM 378
G+ +R +I
Sbjct: 357 GKSIRSVIRF 366
|
Length = 366 |
| >gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 433 bits (1115), Expect = e-152
Identities = 181/367 (49%), Positives = 258/367 (70%), Gaps = 1/367 (0%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
+AAVAW AG+PL I++V+V PQ EV ++I T +C TD + +FP I GHE
Sbjct: 3 RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
AG+VE+VGEGV+ ++VGDHV+P++T ECG+C+ C S +N+C +R +G+M DG
Sbjct: 63 GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGT 121
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 191
SRFS +G+P+ H++G STFSEYTVV +AKINP APL++VC+L CGV+TG+GA LN A
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181
Query: 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD 251
K E G +VAVFGLG +GL+ +GAR+A ASRII +D + +FE AKK G TD VN +++D
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYD 241
Query: 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN 311
+PIQEVI E+T+GGVD S EC GN++ M +A EC H GWG ++++GV T+P
Sbjct: 242 KPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQ 301
Query: 312 VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG 371
++ R +G+ FG K RT+LP +V+ YM ++ L+ F+TH +P +IN+AF+ M +G+
Sbjct: 302 LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS 361
Query: 372 LRCIISM 378
+R +I
Sbjct: 362 IRTVIHY 368
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368 |
| >gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-150
Identities = 180/366 (49%), Positives = 245/366 (66%), Gaps = 2/366 (0%)
Query: 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
CKAAV WE GKPL I+++EVAPP+A EVRIK+ T +C TDL+ + K TP P I GH
Sbjct: 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTP-LPVILGH 59
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E AG+VES+G GV+ L+ GD V+P+F +CG C+ C + N+C R RG+M +DG
Sbjct: 60 EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDG 118
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
SRF+ G+P++HFLGTSTF+EYTVV +AKI+P APL+KVC++ CG STG GA +N
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
AK GS+ AVFGLG VGL+ G + AGASRII VD + +FE+AK+ G T+ +N +
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQ 238
Query: 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI 310
D+PI EV+ EMT+GGVD + E G+ D + A + G G +V+VGVP P
Sbjct: 239 DKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPN 298
Query: 311 NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370
++L RT+KGT FG +K + +P +V +Y K+ L++ ITH +PF EIN F+ M GE
Sbjct: 299 DLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGE 358
Query: 371 GLRCII 376
+R I+
Sbjct: 359 SIRTIL 364
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 374 bits (963), Expect = e-129
Identities = 153/371 (41%), Positives = 213/371 (57%), Gaps = 16/371 (4%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGH 70
+AAV E GKPL I++VE+ P EV ++I LC +DL+ G P P + GH
Sbjct: 2 RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT--GDLPAPLPAVLGH 59
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E AGVVE VG GV+ ++ GDHV+ + CG CR+C N+CD + G L DG
Sbjct: 60 EGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD--LGAGILGGQLPDG 117
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
RF+ +GEPV G TF+EYTVV V KI+ PLD+ +L CGV+TG+GA +N
Sbjct: 118 TRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNT 177
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
A+ G +VAV G G VGL A +GARIAGASRII VD ++ E A++FG T VN SE
Sbjct: 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASED 237
Query: 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP 309
D E + ++T+G G D + E G + A G G AV+VG+ T
Sbjct: 238 D--AVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPG---ETVS 291
Query: 310 IN----VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEY 365
+ L+E+ L+G+ +G+ PR D+P ++D+Y +L+L++ +T R EIN+AF
Sbjct: 292 LPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFAD 351
Query: 366 MVKGEGLRCII 376
M+ GE R +I
Sbjct: 352 MLAGENARGVI 362
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363 |
| >gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 305 bits (785), Expect = e-102
Identities = 139/366 (37%), Positives = 200/366 (54%), Gaps = 12/366 (3%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+ AAV E G P +++DVE+ P+ EV ++I T +C TDL + TPL P +
Sbjct: 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPTPL-PAVL 59
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCD-LLRINPVRGVML 127
GHE AGVVE+VG V+ L+ GDHV+ F CG+C +C S C+ +N
Sbjct: 60 GHEGAGVVEAVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLN--FSGRR 116
Query: 128 ADGQSRFSIN-GEPVN-HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
DG + S++ G PV+ HF G S+F+ Y VVH V K++ PL+ + L CG+ TG G
Sbjct: 117 PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAG 176
Query: 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245
A LNV KP GSS+AVFG GAVGLAA A+IAG + II VD R E AK+ G T +
Sbjct: 177 AVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVI 236
Query: 246 NTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF 305
N E D + I E+T GGVD +++ TG + A + + G LVG P A
Sbjct: 237 NPKEED--LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEV 293
Query: 306 MTKPINVLNE-RTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
++L +T++G G+ P+ +P ++++Y + +K +T PF +IN+A
Sbjct: 294 TLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFY-PFEDINQAIA 352
Query: 365 YMVKGE 370
G+
Sbjct: 353 DSESGK 358
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365 |
| >gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 1e-97
Identities = 149/374 (39%), Positives = 210/374 (56%), Gaps = 14/374 (3%)
Query: 12 KAAVAWEAG--------KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
+AAV E G +PL+I++VE+ PP EV +KI LC +DL PL
Sbjct: 2 RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL 61
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
P GHEAAGVV VGEGV+DLEVGDHV+ VF CG CR C +C+
Sbjct: 62 -PMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGA 120
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
G +L G R + G +NH LG S F+EY VV V KI+ PL+ + C V TG
Sbjct: 121 GTLL-SGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179
Query: 184 LGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243
+GA +N A G SVAV GLG VGL+A GA AGAS+++ VD + + A++ G T
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
VN + + E + E+T GGVD + E G++ + +A+E G G V G+P +A
Sbjct: 240 TVNAGDPN--AVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEA 296
Query: 304 VFMTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
++ V ERTLKG++ G+ PR D+P + +Y++ +L ++K +THR+P EIN+
Sbjct: 297 RLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEG 356
Query: 363 FEYMVKGEGLRCII 376
F+ + GE +R +I
Sbjct: 357 FDRLAAGEAVRQVI 370
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371 |
| >gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 4e-88
Identities = 134/370 (36%), Positives = 209/370 (56%), Gaps = 10/370 (2%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KAAV W G+P ++++E+ P+A EV +K+ + LC +D + P +P + GHE
Sbjct: 3 KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
AGVV VG GV+ ++ GDHV+ F CG CR C + + N+CDL + G ++DG
Sbjct: 63 GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDL-GAALLTGSQISDGT 121
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 191
RF +G+ V TFSEYTVV V KI+ PLDK C++ CGV TG G+ +N+A
Sbjct: 122 YRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIA 181
Query: 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD 251
G +V V G+G VG+ A +GA +AGA ++I VD + E+A KFG T + E
Sbjct: 182 DVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFASMEE- 240
Query: 252 RPIQEVIAEMTNG-GVDRSVECTGNID-NMIS-AFECVHDGWGVAVLVGV--PSKDAVFM 306
+Q ++ E+TNG G D+++ G +D I+ A G G V+ G+ + V +
Sbjct: 241 -AVQ-LVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMADVDVKV 297
Query: 307 TKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
L ++ L+GT FG PR D+P ++++Y +L+L++ IT +IN+ ++ M
Sbjct: 298 NLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEGYQDM 357
Query: 367 VKGEGLRCII 376
+ G+ +R +I
Sbjct: 358 LDGKNIRGVI 367
|
This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369 |
| >gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 2e-78
Identities = 136/369 (36%), Positives = 200/369 (54%), Gaps = 15/369 (4%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
T + +A G P+ ++ + V P EV + I+ +C TDL++ E G FP + G
Sbjct: 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREG-GINDEFPFLLG 59
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HEAAGVVE+VGEGV+D+ GD+V+ + CG CR C+ C N + + L D
Sbjct: 60 HEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTH-NATQKMTLTD 118
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN 189
G ++ LG F+E T+VH+G K++P A +L CGV GLGA +N
Sbjct: 119 GT--------ELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVN 170
Query: 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249
+RG SVAV G G VG AA GA +AGAS+II VD ++ E A++FG T VN+S
Sbjct: 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG 230
Query: 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
D P++ I +T G G D ++ G + AF D G VLVGVP+ D
Sbjct: 231 TD-PVEA-IRALTGGFGADVVIDAVGRPETYKQAFY-ARDLAGTVVLVGVPTPDMTLELP 287
Query: 309 PINVLNE-RTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMV 367
++V LK +++G+ P D P +VD+Y+ +L L+ F+T RI ++ +AF+ M
Sbjct: 288 LLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMH 347
Query: 368 KGEGLRCII 376
G+ LR ++
Sbjct: 348 AGDVLRSVV 356
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358 |
| >gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-73
Identities = 124/376 (32%), Positives = 185/376 (49%), Gaps = 20/376 (5%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPR--IFG 69
KAAV PL I+++ V P+ E+ I++ +C +DL+ KG+ P FP + G
Sbjct: 2 KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVL--KGELP-FPPPFVLG 58
Query: 70 HEAAGVVESVGEGVSD---LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
HE +G V VG V + L VGD V+ F CG CR+C N+C+
Sbjct: 59 HEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGT 118
Query: 127 LADGQSR-FSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
L DG +R F ++G PV + +EY VV + +A + + +L C T G
Sbjct: 119 LYDGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYG 177
Query: 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245
A + A G +VAV G+G VG +A + A+ GAS II VD ++ +AK+ G T V
Sbjct: 178 ALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTV 237
Query: 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
N ++ D I E+T G GVD VE G + A + V DG G AV+VG+ A
Sbjct: 238 NAAKEDAV--AAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT 294
Query: 305 --FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
+ V + G++ +PR DLP +V + + +L+ E +TH+ EIN+A
Sbjct: 295 AEIPITRL-VRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEA 351
Query: 363 FEYMVKGEG-LRCIIS 377
+E + KG R I+
Sbjct: 352 YENLRKGLIHGRAIVE 367
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 7e-62
Identities = 102/361 (28%), Positives = 158/361 (43%), Gaps = 24/361 (6%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL-YFWESKGQTPLFPRIFGH 70
KAAV + G + +++ P +V I++ T +C +DL + + P I GH
Sbjct: 2 KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E G V VG V +VGD V+ CG CR+CR+ N+C+ G+
Sbjct: 62 EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLG---- 116
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
G F+EY V + P ++ L+ ++T
Sbjct: 117 -----------GGIDGG--FAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
A G +V V G G +GL A A++ GAS +I VDRS +R E AK+ G D V
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223
Query: 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP 309
D I E+T G G D +E G+ + A E + G G V+VGV + + +
Sbjct: 224 DDAG-AEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAG 281
Query: 310 INVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG 369
+ V E TL+G+ R D +D+ + +++ EK ITHR+P + +A+E
Sbjct: 282 LVVSKELTLRGSL--RPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADR 339
Query: 370 E 370
+
Sbjct: 340 K 340
|
Length = 350 |
| >gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 3e-59
Identities = 118/371 (31%), Positives = 174/371 (46%), Gaps = 42/371 (11%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KAAV + G+PL I++V V P EV IK++ +C TDL+ + P P I GHE
Sbjct: 5 KAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHE 64
Query: 72 AAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G V VGEGV+ L+VGD V + CG+C +CRS N+C +I
Sbjct: 65 IVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI----------- 113
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
+ ++ +G ++EY VV + V KI L + L C T A L
Sbjct: 114 -TGYTTDG----------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRA-LKK 161
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
A + G VAV G G +G A + A+ GA +I + RS ++ E AKK G +N+S+
Sbjct: 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSDS 220
Query: 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI 310
D E + E+ D ++ G + + + + G G VLVG+P P
Sbjct: 221 DAL--EAVKEI----ADAIIDTVGPAT-LEPSLKALRRG-GTLVLVGLPGGGP-IPLLPA 271
Query: 311 N--VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
+L E ++ G+ G R DL +D +++ E I IP EIN+A+E M K
Sbjct: 272 FLLILKEISIVGSLVGT---RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEK 326
Query: 369 GEGL-RCIISM 378
G+ R +I M
Sbjct: 327 GKVRGRAVIDM 337
|
Length = 339 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 1e-58
Identities = 83/304 (27%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPV 95
EV ++++ LC TDL+ P P I GHE AGVV VG GV+ ++VGD V+ +
Sbjct: 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60
Query: 96 FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTV 155
CG C CR L F+EY V
Sbjct: 61 PNLGCGTCELCRELCPGGGIL--------------------------GEGLDGGFAEYVV 94
Query: 156 VHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGA 215
V + + + L++ +L ++T A + G +V V G G VGL AA+ A
Sbjct: 95 VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154
Query: 216 RIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275
+ AGA R+I DRS ++ E AK+ G ++ E D E + GG D ++ G
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLE--EELRLTGGGGADVVIDAVGG 211
Query: 276 IDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSV 335
+ + A + G G V+VG S + E T+ G+ G + D
Sbjct: 212 PETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTRE---DFEEA 267
Query: 336 VDMY 339
+D+
Sbjct: 268 LDLL 271
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 5e-55
Identities = 105/375 (28%), Positives = 159/375 (42%), Gaps = 57/375 (15%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPLFPRIFG 69
KA V L +D+ P EV +K+K +C +D+ Y P + G
Sbjct: 2 KALV-LTGPGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYL---GTGAYHPPLVLG 57
Query: 70 HEAAGVVESVGEGVSDLEVGDHV-----LPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
HE +G VE VG GV DL VGD V LP CG C +C+ ++C N
Sbjct: 58 HEFSGTVEEVGSGVDDLAVGDRVAVNPLLP-----CGKCEYCKKGEYSLCS----N--YD 106
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCG----V 180
+ G R F+EY V + + KI P D V
Sbjct: 107 YI---GSRRDG-------------AFAEYVSVPARNLIKI----P-DHVDYEEAAMIEPA 145
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
+ L A + +A G +V V G G +GL A + +I GA R+I VD ++ A++ G
Sbjct: 146 AVALHA-VRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG 204
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
D +N E D E + E+T G G D +E G+ + A G G VLVG+P
Sbjct: 205 ADDTINPKEED---VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIP 260
Query: 300 SKDAVFMTKPIN--VLNERTLKGTFFGNYKPRT--DLPSVVDMYMNKQLELEKFITHRIP 355
D + + E T++G++ P + + +D+ + ++++E ITHR+P
Sbjct: 261 YGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLP 320
Query: 356 FSEINKAFEYMVKGE 370
+ AFE + E
Sbjct: 321 LEDGPAAFERLADRE 335
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343 |
| >gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 8e-55
Identities = 113/374 (30%), Positives = 174/374 (46%), Gaps = 51/374 (13%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGH 70
KA V +E L +++V V P EV IK+ +C TDL+ +E G+ P + GH
Sbjct: 2 KALV-YEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE--GEFGAAPPLVPGH 58
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVRGVM 126
E AGVV +VG V+ +VGD V + CG+C +CR N+C+ L GV
Sbjct: 59 EFAGVVVAVGSKVTGFKVGDRV----AVDPNIYCGECFYCRRGRPNLCENLT---AVGVT 111
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI-NPLAPLDKVCI--LSCGVSTG 183
G F+EY VV + V KI + L+ + LSC V
Sbjct: 112 RNGG-------------------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH-- 150
Query: 184 LGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243
G L++ + G SV VFG G +GL A+ ++ GASR+ + + ++ E AKK G T+
Sbjct: 151 -G--LDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATE 207
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
V+ S D E E G D +E TG + A E G G ++ GV + DA
Sbjct: 208 TVDPSRED---PEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDA 263
Query: 304 VFMTKPINVLN-ERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
P + E T+ G+F Y P + + + +++++ ++HR+P E+ +A
Sbjct: 264 RVSISPFEIFQKELTIIGSFINPYT----FPRAIALLESGKIDVKGLVSHRLPLEEVPEA 319
Query: 363 FEYMVKGEGLRCII 376
E M G L+ ++
Sbjct: 320 LEGMRSGGALKVVV 333
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334 |
| >gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 3e-53
Identities = 106/364 (29%), Positives = 170/364 (46%), Gaps = 43/364 (11%)
Query: 14 AVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY-------FWESKGQTPL--- 63
A + K + +++V P + EV+IK+ + +C +DL+ F ++G L
Sbjct: 3 AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGE 62
Query: 64 -FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
P GHE +GVV VG GV+ +VGD V+ T +CG C C+ + N+CD + +
Sbjct: 63 TAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCD--SLGFI 120
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
G+ G F+EY VV + V K+ PL+ L ++
Sbjct: 121 -GLGGGGG------------------GFAEYVVVPAYHVHKLPDNVPLE-EAALVEPLAV 160
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
A + + + G + V G G +GL + AGAS+II + S R E A++ G T
Sbjct: 161 AWHA-VRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGAT 219
Query: 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301
++ +E D + + ++T G GVD S +C G + +A + + G AV V + K
Sbjct: 220 IVLDPTEVD--VVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEK 276
Query: 302 DAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEI-N 360
F + VL E+TL G+ Y R D V+D+ + +++ E IT RIP +I
Sbjct: 277 PISFNPNDL-VLKEKTLTGSI--CY-TREDFEEVIDLLASGKIDAEPLITSRIPLEDIVE 332
Query: 361 KAFE 364
K FE
Sbjct: 333 KGFE 336
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351 |
| >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 5e-52
Identities = 112/359 (31%), Positives = 169/359 (47%), Gaps = 44/359 (12%)
Query: 20 GKPLIIQDVEVAPPQAM--EVRIKIKYTSLCRTDLYFWESKGQTPLF--PRIFGHEAAGV 75
KP ++ V++ P EV +++K +C +DL+ + G+ P PRI GHE +G
Sbjct: 7 EKPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYH--GRNPFASYPRILGHELSGE 64
Query: 76 VESVGEGVSDLEVGDHV--LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSR 133
V VGEGV+ L+VGD V P CG+C CR N C+ L+ V GV DG
Sbjct: 65 VVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQ---VLGVH-RDG--- 115
Query: 134 FSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKP 193
F+EY VV + + + LD+ ++ ++ G A A
Sbjct: 116 ---------------GFAEYIVVPADAL-LVPEGLSLDQAALVEP-LAIGAHAV-RRAGV 157
Query: 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253
G +V V G G +GL + A+ GA R+I VD +R E A++ G D +N + D
Sbjct: 158 TAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDED-- 214
Query: 254 IQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV 312
+ + E+T+G G D ++ TGN +M A E V G G VLVG+ F
Sbjct: 215 VAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGPVTFPDPEF-H 272
Query: 313 LNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG 371
E T+ G+ R D P V+D+ + +++ E ITHR PF ++ +AF+ G
Sbjct: 273 KKELTILGSRNAT---REDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPG 328
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-51
Identities = 104/379 (27%), Positives = 165/379 (43%), Gaps = 52/379 (13%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KAAV + +++V V P EV +K++ +C TD+ PRI GHE
Sbjct: 2 KAAV-LHGPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTG-ECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
AG + VG+GV+ +VGD V V CG+C +C NMC + L DG
Sbjct: 61 IAGEIVEVGDGVTGFKVGDRVF-VAPHVPCGECHYCLRGNENMCPNYKK----FGNLYDG 115
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK--INPLAPLDKVCI--------LSCGV 180
F+EY V + V + + L D V L+C +
Sbjct: 116 ------------------GFAEYVRVPAWAVKRGGVLKLP--DNVSFEEAALVEPLACCI 155
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
A + G +V V G G +GL A A+ +GA ++I D + R E AKK G
Sbjct: 156 -----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLG 210
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
++ +E D E + E+T+G G D + TG+ + A E V G G + G
Sbjct: 211 ADYTIDAAEEDLV--EKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGL 267
Query: 300 SKDAVFMTKPINVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFS 357
K + + N++ E T+ G++ D +++ + +++++ ITHR P
Sbjct: 268 PKGS-TVNIDPNLIHYREITITGSY---AASPEDYKEALELIASGKIDVKDLITHRFPLE 323
Query: 358 EINKAFEYMVKGEGLRCII 376
+I +AFE G+ L+ +I
Sbjct: 324 DIEEAFELAADGKSLKIVI 342
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343 |
| >gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-49
Identities = 103/362 (28%), Positives = 159/362 (43%), Gaps = 38/362 (10%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
+AAV E G+PL I++V P V ++++ +CR+D + W+ P + GHE
Sbjct: 2 RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
AGVV VGE VS VGD V F CG C +CR+ SN+C+ Q
Sbjct: 62 FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV------------Q 109
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKV-----CILSCGVSTGLGA 186
F+ G +F+EY V A +N + D V L C +T A
Sbjct: 110 PGFTHPG----------SFAEYVAVPR---ADVNLVRLPDDVDFVTAAGLGCRFATAFRA 156
Query: 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246
++ A+ + G VAV G G VGL+A A GA R+I VD + E A++ G VN
Sbjct: 157 LVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVN 215
Query: 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
SE + + ++T GG SV+ G + ++ + G V VG+ + +
Sbjct: 216 ASEVEDV-AAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGV 273
Query: 307 TKPIN--VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
P++ V E + G+ G P +++ + + +L+ E + I E A
Sbjct: 274 ALPMDRVVARELEIVGS-HGM--PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALA 330
Query: 365 YM 366
M
Sbjct: 331 AM 332
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345 |
| >gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 3e-49
Identities = 100/396 (25%), Positives = 163/396 (41%), Gaps = 98/396 (24%)
Query: 21 KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF----PRIFGHEAAGVV 76
L +++ + P EV ++++ +C +D+++++ G+ F P + GHE+AG V
Sbjct: 8 GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYK-HGRIGDFVVKEPMVLGHESAGTV 66
Query: 77 ESVGEGVSDLEVGDHV-----LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
+VG GV+ L+VGD V +P C C C+S N+C
Sbjct: 67 VAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLC----------------- 104
Query: 132 SRFSINGEPVNHFLGTS----TFSEYTVVHSGCVAKIN------------PLAPLDKVCI 175
P F T T Y + K+ PL+ V +
Sbjct: 105 --------PDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLS----VGV 152
Query: 176 LSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
+C A G +V VFG G +GL A A+ GA++++ D R E
Sbjct: 153 HAC----------RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEF 202
Query: 236 AKKFGVTDFVNTSEHDRP-IQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGW--- 290
AK+ G T VN D P E IAE+ G G D +ECTG A C+
Sbjct: 203 AKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTG-------AESCIQTAIYAT 255
Query: 291 ---GVAVLVGVPSKDAVFMTKPINVLNER--TLKGTF-FGNYKPRTDLPSVVDMYMNKQL 344
G VLVG+ + P++ + R ++G F + N P+ +++ + ++
Sbjct: 256 RPGGTVVLVGMGKPEVTL---PLSAASLREIDIRGVFRYAN-----TYPTAIELLASGKV 307
Query: 345 ELEKFITHRIPFSEINKAFEYMVKG--EGLRCIISM 378
+++ ITHR P + +AFE KG ++ +I
Sbjct: 308 DVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIEG 343
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343 |
| >gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-48
Identities = 112/364 (30%), Positives = 154/364 (42%), Gaps = 33/364 (9%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KA V GK + + + + +++ TS+C +DL+ + I GHE
Sbjct: 2 KALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHE 61
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
G V VG V L+ GD V CG CR CR C L +
Sbjct: 62 FVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHC---------ENGLWGWK 112
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVH--SGCVAKINPLAPLDKVCILSCGVSTGL-GATL 188
I+G +EY V +AKI P + +LS + TG GA L
Sbjct: 113 LGNRIDG----------GQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAEL 162
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
KP GS+VAV G G VGL A GAR+ GA+RII VD + +R + AK+ G TD +N
Sbjct: 163 AGIKP--GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK 220
Query: 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP-SKDAVFM 306
D I E I E+T G GVD +E G + A + V G G VGV D + +
Sbjct: 221 NGD--IVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPL 277
Query: 307 TKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
N T K R +P ++D+ +++ K ITHR P +I KA+
Sbjct: 278 LGEWFGKN-LTFKTGLVPV---RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLF 333
Query: 367 VKGE 370
Sbjct: 334 DNKP 337
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347 |
| >gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-48
Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 37/381 (9%)
Query: 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPR--IF 68
+AAV GKPL I++V + + V ++++ +C +D++ G+ P P I
Sbjct: 1 ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTV--AGRRPRVPLPIIL 58
Query: 69 GHEAAGVVESVGEGVSD------LEVGDHVL-PVFTGECGDCRHCRSDVSNMCDLLRINP 121
GHE G V ++G GV+ L+VGD V V CG C C C+ +
Sbjct: 59 GHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKK-- 115
Query: 122 VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC-VAKINPLAPLDKVCILSCGV 180
+P H G ++E+ + G + ++ P + +C +
Sbjct: 116 ---YGHEAS------CDDP--HLSGG--YAEHIYLPPGTAIVRVPDNVPDEVAAPANCAL 162
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
+T L A G +V V G G +GL A A++AGA R+I +D S +R E A++FG
Sbjct: 163 ATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG 222
Query: 241 VTDFVNTSEH-DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298
++ E D + ++ ++T G G D +E +G+ + E + G G VLVG
Sbjct: 223 ADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGS 281
Query: 299 PSKDAVFMTKPIN-VLNERTLKGTFFGNYKPR--TDLPSVVDMYMNKQLELEKFITHRIP 355
+ P V T+ G NY P ++ ++ + +THR P
Sbjct: 282 VAPAGTVPLDPERIVRKNLTIIGVH--NYDPSHLYRAVRFLERTQDRFP-FAELVTHRYP 338
Query: 356 FSEINKAFEYMVKGEGLRCII 376
+IN+A E G L+ +I
Sbjct: 339 LEDINEALELAESGTALKVVI 359
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361 |
| >gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 9e-47
Identities = 103/358 (28%), Positives = 157/358 (43%), Gaps = 36/358 (10%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF-GHEAAGVVESVGEGV 83
+++ V P EV +++K + LC +DL+++ + P + + GHE AGVV +VG GV
Sbjct: 14 LREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGV 73
Query: 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNH 143
+ VGD V+ CG CR+CR +C +
Sbjct: 74 THFRVGDRVMVYHYVGCGACRNCRRGWMQLCT---------------------SKRAAYG 112
Query: 144 FLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 203
+ +EY +V + + +L CG+ T A L +V V G
Sbjct: 113 WNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHA-LRRVGVSGRDTVLVVG 171
Query: 204 LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN 263
G VGL A AR GA +IGVD S +R E AK G DFV S D + I E+T+
Sbjct: 172 AGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA-DFVINSGQDDV--QEIRELTS 228
Query: 264 G-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NERTLKG 320
G G D ++EC+GN A E V WG VLVG + + N L +RTL G
Sbjct: 229 GAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGEGGE---LTIEVSNDLIRKQRTLIG 284
Query: 321 TFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378
++ Y D+ + +LE+++ +THR + +A+ +GE + +
Sbjct: 285 SW---YFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-46
Identities = 100/361 (27%), Positives = 148/361 (40%), Gaps = 36/361 (9%)
Query: 14 AVAWEAGKPLIIQ--DVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGH 70
A + G ++ +V V P EV +K+K +C +DL+ + T P GH
Sbjct: 3 AWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGH 62
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E AG V VG GV++ +VGD V CG C CR N+C L G
Sbjct: 63 EIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQG 110
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
I+G F+EY VV + + + P + + + V T A +
Sbjct: 111 MPGLGIDG----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRA 160
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
+ + G +V V GLG +GL A + A+ GA +I VD ++ E AK+ G D V S
Sbjct: 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGA-DEVLNSLD 218
Query: 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI 310
D P + A GG D + G A + V G G V+VG+ +
Sbjct: 219 DSPKDKKAAG-LGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSDL 276
Query: 311 NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370
+ E + G+F G DLP V+D+ +L P EI + E + KG+
Sbjct: 277 -IARELRIIGSFGG---TPEDLPEVLDLIAKGKL---DPQVETRPLDEIPEVLERLHKGK 329
Query: 371 G 371
Sbjct: 330 V 330
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 |
| >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-43
Identities = 111/373 (29%), Positives = 166/373 (44%), Gaps = 55/373 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE----SKGQTPLFPRI 67
KA V +AG + +V V P EV IK+ S+C TD++ +E ++ + P I
Sbjct: 2 KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRI-KPPLI 60
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVR 123
FGHE AG V VGEGV+ ++VGD+V + E CG C CR+ ++C +I
Sbjct: 61 FGHEFAGEVVEVGEGVTRVKVGDYV----SAETHIVCGKCYQCRTGNYHVCQNTKI---L 113
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGV 180
GV +G F+EY VV + K + P + I L V
Sbjct: 114 GV---------DTDG----------CFAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAV 154
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
T L + G SV + G G +GL A A+ AGAS +I D + R E AKK G
Sbjct: 155 HTVLAGDV------SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMG 208
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
+N E D + EV + GVD +E +GN + + + G G ++G+P
Sbjct: 209 ADVVINPREED--VVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPP 265
Query: 301 KDAVFMTKPINVLNERTLKG-TFFGNYKPR--TDLPSVVDMYMNKQLELEKFITHRIPFS 357
I++ N KG T G + V + + +++L ITH++P
Sbjct: 266 GPV-----DIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLE 320
Query: 358 EINKAFEYMVKGE 370
+ +AFE M G+
Sbjct: 321 DFEEAFELMRSGK 333
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 |
| >gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-42
Identities = 105/373 (28%), Positives = 157/373 (42%), Gaps = 54/373 (14%)
Query: 11 CKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
KAAV E G KP ++DV V P EV +K++ + +C TDL+ G P+ P
Sbjct: 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAA--LGDWPVKPKLPL 58
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
I GHE AGVV +VG GVS L+VGD V + CG C +CR+ +C
Sbjct: 59 IGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCP---------- 108
Query: 126 MLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
S ++++G TF+EY + + V I ++ L C T
Sbjct: 109 --NQKNSGYTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYK 156
Query: 186 ATLNVAKPERGSSVAVFGLG------AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239
A L A + G V + G G V A A G R+I +D ++ E AK+
Sbjct: 157 A-LKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL------RVIAIDVGDEKLELAKEL 209
Query: 240 GVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
G FV+ + D ++ V GG V + A + + G G V VG+P
Sbjct: 210 GADAFVDFKKSD-DVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLP 267
Query: 300 SKDAVFMTKPIN--VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFS 357
F+ VL T+ G+ G R DL ++ ++ K +P
Sbjct: 268 PGG--FIPLDPFDLVLRGITIVGSLVGT---RQDLQEALEFAARGKV---KPHIQVVPLE 319
Query: 358 EINKAFEYMVKGE 370
++N+ FE M +G+
Sbjct: 320 DLNEVFEKMEEGK 332
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 7e-42
Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 55/372 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWES---KGQTPLFPRIF 68
KAA +E GKPL ++DV V P +V +++ +C +DL+ + P
Sbjct: 2 KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
GHE AG VE VG GV L+ GD V+ P + CG CR+CR N C+ R
Sbjct: 62 GHENAGWVEEVGSGVDGLKEGDPVVVHPPWG--CGTCRYCRRGEENYCENARFPG----- 114
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSC-GVSTGLG 185
+G F+EY +V S + K+ + L+ G++
Sbjct: 115 -------IGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHA 157
Query: 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245
+ + GS+V V G+G +G A + R + +I VDRS + + A++ G +
Sbjct: 158 VKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVL 217
Query: 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVG------V 298
N S+ E + E+T G G D ++ G+ + + A + + G G V+VG +
Sbjct: 218 NASDDVV---EEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGHGRL 273
Query: 299 PSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSE 358
P+ D V E ++ G+ +G +L VV + + ++++E + P +
Sbjct: 274 PTSDLVPT--------EISVIGSLWGTR---AELVEVVALAESGKVKVE---ITKFPLED 319
Query: 359 INKAFEYMVKGE 370
N+A + + +G
Sbjct: 320 ANEALDRLREGR 331
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340 |
| >gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 3e-41
Identities = 114/390 (29%), Positives = 173/390 (44%), Gaps = 61/390 (15%)
Query: 14 AVAWEAGKPLIIQDVEVA--PPQAME----VRIKIKYTSLCRTDLYFWESKGQTPLFPR- 66
A+ W GK DV V P +E +++ T++C +DL+ + G P +
Sbjct: 3 ALVWH-GK----GDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYH--GYIPGMKKG 55
Query: 67 -IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
I GHE GVVE VG V +L+VGD V+ FT CG+C +C+ + + CD NP +
Sbjct: 56 DILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCD--NTNPSAEM 113
Query: 126 MLADGQSRFSINGEPVNHFLG--TSTFSEYTVV---HSGCVAKINPLAPLDKVCILSCGV 180
G + I G H G +EY V G KI +K LS +
Sbjct: 114 AKLYGHAGAGIFGYS--HLTGGYAGGQAEYVRVPFADVGPF-KIPDDLSDEKALFLSDIL 170
Query: 181 STGL-GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239
TG A L KP G +VAV+G G VGL AA A++ GA R+I +DR +R E A+
Sbjct: 171 PTGYHAAELAEVKP--GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228
Query: 240 GVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVEC---------------------TGNID 277
+ +N E D + E + E+T G G D ++ T D
Sbjct: 229 LGAETINFEEVDDVV-EALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPD 287
Query: 278 NMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVLNER--TLKGTFFGNYKPRTDLPS 334
+ A + V G G ++GV + K PI + TL+ G + LP
Sbjct: 288 ALREAIQAVRKG-GTVSIIGVY---GGTVNKFPIGAAMNKGLTLRM---GQTHVQRYLPR 340
Query: 335 VVDMYMNKQLELEKFITHRIPFSEINKAFE 364
++++ + +L+ ITHR+P + +A++
Sbjct: 341 LLELIESGELDPSFIITHRLPLEDAPEAYK 370
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386 |
| >gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 8e-41
Identities = 100/371 (26%), Positives = 158/371 (42%), Gaps = 35/371 (9%)
Query: 14 AVAWEAGKPLIIQDVEVAPPQAMEVR---IKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
AV ++ P ++ EV PQ + +K+ ++C +DL+ + + + GH
Sbjct: 3 AVVFK--GPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP-GFVLGH 59
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E G V VG V L+VGD V+ FT CG+C +CR S C +G +
Sbjct: 60 EFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCA-------KGGLFGYA 112
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVV--HSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
S +++G +EY V G + K+ + +L + TG
Sbjct: 113 GSP-NLDGAQ----------AEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAK 161
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
A+ G +VAV G G VGL A A++ GA+R+ VD +R E A G
Sbjct: 162 R-AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE--PINF 218
Query: 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
E P++ V E T G G D +E G + AF+ V GV VGV + +
Sbjct: 219 EDAEPVERV-REATEGRGADVVLEAVGGAAALDLAFDLVRP-GGVISSVGVHTAEEFPFP 276
Query: 308 KPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMV 367
TL+ FG R+ P ++ + + +L+LE I HR+P E +A+
Sbjct: 277 GLDAYNKNLTLR---FGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFD 333
Query: 368 KGEGLRCIISM 378
K + L+ ++
Sbjct: 334 KRKVLKVVLDP 344
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344 |
| >gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-40
Identities = 96/372 (25%), Positives = 147/372 (39%), Gaps = 53/372 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY--FWESKGQTPLFPRIFG 69
KA GK I + + + ++ + C +D++ + + G+ I G
Sbjct: 2 KAFAMLGIGKVGWI-EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERH--GMILG 58
Query: 70 HEAAGVVESVGEGVSDLEVGDHVL-PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
HEA GVVE VG V D + GD V+ P T + + G ML
Sbjct: 59 HEAVGVVEEVGSEVKDFKPGDRVIVPAIT-PDWRSVAAQRGYPSQS---------GGML- 107
Query: 129 DGQSRFS--INGEPVNHFLGTSTFSEYTVVHS--GCVAKINPLAPLDKVCILSCGVSTGL 184
G +FS +G F+EY V+ +A + ++ +L +STG
Sbjct: 108 -GGWKFSNFKDG----------VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGF 156
Query: 185 GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
A + G +VAVFG+G VGL A GAR+ GA RII V R E AK++G TD
Sbjct: 157 HGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDI 215
Query: 245 VNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
V+ + + E I ++T G GVD + G D A + + G G V +D
Sbjct: 216 VDY--KNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDD 272
Query: 304 VFMTKPINVLNERTLKGTFFGNYKPRTDL--------PSVVDMYMNKQLELEKFITHRI- 354
+ R G G+ L + + +++ K +TH
Sbjct: 273 Y-------LPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFF 325
Query: 355 PFSEINKAFEYM 366
F +I +A M
Sbjct: 326 GFDDIEEALMLM 337
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351 |
| >gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 7e-40
Identities = 100/361 (27%), Positives = 150/361 (41%), Gaps = 40/361 (11%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KAAV AG PL ++V V P EV IKI+ +C TDL+ E +P + GHE
Sbjct: 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60
Query: 72 AAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G V VG GV +VGD V + G CG C +CR + N+C
Sbjct: 61 IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTG--------- 111
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
++ G ++EY V + + PL + L C T A L
Sbjct: 112 ---YTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSA-LRD 157
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
A P G VAV G+G +G A + AR G + + RS + E A+K G + V++
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE 216
Query: 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA-VFMTKP 309
+ GG D + + +A + G G VLVG+P P
Sbjct: 217 LD------EQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFP 269
Query: 310 INVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG 369
+ ++ +++ G+ G R DL +D ++ K + P + N+A+E M KG
Sbjct: 270 L-IMKRQSIAGSTHGG---RADLQEALDFAAEGKV---KPMIETFPLDQANEAYERMEKG 322
Query: 370 E 370
+
Sbjct: 323 D 323
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330 |
| >gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-37
Identities = 100/362 (27%), Positives = 162/362 (44%), Gaps = 42/362 (11%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL--FPRIFG 69
KAA+ + KPL I++V P EV IK+K +C DL FW KG P +P I G
Sbjct: 2 KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFW--KGFFPRGKYPLILG 59
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HE G VE VGEGV + GD V+ + CG C +C S N+C
Sbjct: 60 HEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRA----------- 108
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN 189
GE V+ F+EY V + K+ + + +C V T + A L
Sbjct: 109 ------EYGEEVDGG-----FAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHA-LK 156
Query: 190 VAKPERGSSVAV-FGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
A ++G +V V G VG+ A + A+ GA R+I V RS ++ + K+ G ++ S
Sbjct: 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS 215
Query: 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK 308
+ E + ++ GG D +E G + + ++ G G VL+G + D +
Sbjct: 216 K----FSEDVKKL--GGADVVIELVG-SPTIEESLRSLNKG-GRLVLIGNVTPDPAPLRP 267
Query: 309 PINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
+ +L E + G+ + D+ + + K+ +++ I + +IN+A E +
Sbjct: 268 GLLILKEIRIIGSISAT---KADVEEALKLV--KEGKIKPVIDRVVSLEDINEALEDLKS 322
Query: 369 GE 370
G+
Sbjct: 323 GK 324
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332 |
| >gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-37
Identities = 99/369 (26%), Positives = 152/369 (41%), Gaps = 51/369 (13%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE------SKGQTPL-- 63
KAA E GKPL +++ P EV +K+ +C +DL+ W+ L
Sbjct: 2 KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61
Query: 64 ----FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFT-GECGDCRHCRSDVSNMCDLLR 118
P + GHE G V +VG +D++VGD VL V+ CG+C C + N+C R
Sbjct: 62 RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVL-VYPWIGCGECPVCLAGDENLCAKGR 120
Query: 119 INPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVV-HSGCVAKINPLAPLDKVCILS 177
G+ G ++EY +V HS + L L+
Sbjct: 121 AL---GIFQDGG-------------------YAEYVIVPHSRYLVDPGGL-DPALAATLA 157
Query: 178 CGVSTGLGA--TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
C T A L + V + G G +GL A + G + II VD + E
Sbjct: 158 CSGLTAYSAVKKLMPLVADE--PVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA 215
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVL 295
AK G VN S+ D + I + GGVD ++ N AF+ + G G VL
Sbjct: 216 AKAAGADVVVNGSDPDAAKR--IIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVL 272
Query: 296 VGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIP 355
VG+ +A P+ L T++G++ G+ +L +V + K +L+ P
Sbjct: 273 VGLFGGEATLPL-PLLPLRALTIQGSYVGSL---EELRELVALA--KAGKLKPIPLTERP 326
Query: 356 FSEINKAFE 364
S++N A +
Sbjct: 327 LSDVNDALD 335
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350 |
| >gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 111/367 (30%), Positives = 157/367 (42%), Gaps = 54/367 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAME---VRIKIKYTSLCRTDLYFWESKGQTPLFP--R 66
KA V GK + P E +K+ T++C TDL+ KG P R
Sbjct: 2 KALVYHGPGKISW---EDRPKPTIQEPTDAIVKMLKTTICGTDLHIL--KGDVPTVTPGR 56
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
I GHE GVVE VG V++ +VGD VL CG C +CR + + C
Sbjct: 57 ILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHC------------ 104
Query: 127 LADGQSRF--SINGEPVNHFLGTSTFSEYT-VVHS-GCVAKINPLAPLDKVCILSCGVST 182
G I+G T +EY + H+ + K+ + +LS + T
Sbjct: 105 -ESGGWILGNLIDG----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPT 153
Query: 183 GL-GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241
G LN K + G +VA+ G G VGLAA A++ S+II VD R E AKK G
Sbjct: 154 GYECGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA 212
Query: 242 TDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
T VN+++ D E + E+T+G GVD +E G E V G G VGV
Sbjct: 213 THTVNSAKGD--AIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHG 269
Query: 301 KDAVFMTKPI---NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFS 357
K + + N+ L T P ++ + + +L+ K +THR S
Sbjct: 270 KPVDLHLEKLWIKNITITTGLVDT--------NTTPMLLKLVSSGKLDPSKLVTHRFKLS 321
Query: 358 EINKAFE 364
EI KA++
Sbjct: 322 EIEKAYD 328
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-35
Identities = 111/384 (28%), Positives = 171/384 (44%), Gaps = 76/384 (19%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE----SKGQTPLFPRI 67
KA V +A L + DV V P +V IK+K T++C TD++ + ++ P+ P +
Sbjct: 2 KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV-PMV 60
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVR 123
GHE G V VG V+ +VGD V +GE CG CR+CR+ ++C N +
Sbjct: 61 VGHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLC----RN-TK 111
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGV 180
GV G VN F+EY V+ + V KI P D I V
Sbjct: 112 GV----G----------VNR---PGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAV 154
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
T L + ++ G V + G G +G+ AA A+ GA ++ D + R E A+K G
Sbjct: 155 HTAL--SFDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
T VN ++ D +++V+AE+ G D +E +G + ++ G +A+L G+P
Sbjct: 209 ATRAVNVAKED--LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAML-GIP 265
Query: 300 SKDAVFMTKPIN----VLNERTLKG--------TFFGNYKPRTDLPSVVDMYMNKQLELE 347
D I+ + T+KG T+ YK + + + L+L
Sbjct: 266 PGDM-----AIDWNKVIFKGLTIKGIYGREMFETW---YK-------MSALLQSG-LDLS 309
Query: 348 KFITHRIPFSEINKAFEYMVKGEG 371
ITHR P + K FE M G+
Sbjct: 310 PIITHRFPIDDFQKGFEAMRSGQS 333
|
Length = 341 |
| >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-34
Identities = 111/374 (29%), Positives = 170/374 (45%), Gaps = 54/374 (14%)
Query: 18 EAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPL-FPRIFGHEAAG 74
+ G + +V V P EV IK+ TS+C TD+ Y W+ Q+ + P++ GHE AG
Sbjct: 6 KPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAG 65
Query: 75 VVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
V +G GV ++VGD+V + E CG C CR ++C +I
Sbjct: 66 EVVGIGPGVEGIKVGDYV----SVETHIVCGKCYACRRGQYHVCQNTKI----------- 110
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGVSTGLGAT 187
F ++ + F+EY VV + + K P + I L V T L
Sbjct: 111 ---FGVDTDGC--------FAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL--- 156
Query: 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
A P G SV V G G +GL A A+ +GA +I D + R E AKK G T VN
Sbjct: 157 ---AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNP 213
Query: 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
+ D + + +A++T+G GVD +E +G + + V G V++L G+P +
Sbjct: 214 FKED--VVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLL-GLPPGK---V 267
Query: 307 TKPINVLNERTLKGTFFGNYKPRTDLPS---VVDMYMNKQLELEKFITHRIPFSEINKAF 363
T I+ N+ KG R + V + + +L+L+ ITH+ F + K F
Sbjct: 268 T--IDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGF 325
Query: 364 EYMVKGEGLRCIIS 377
E M G+ + I+S
Sbjct: 326 ELMRSGQTGKVILS 339
|
This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340 |
| >gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-33
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 36/304 (11%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84
+++V P EV IK+ +C +DL+ ++ P + GHE +G + VG V
Sbjct: 16 LREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVE 75
Query: 85 DLEVGDHVLPVFTGE-CGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNH 143
+VGD V+ T CG C +CR N+C P R G +G
Sbjct: 76 GWKVGDRVVSETTFSTCGRCPYCRRGDYNLC------PHR---KGIG---TQADG----- 118
Query: 144 FLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGVSTGLGATLNVAKPERGSSVA 200
F+EY +V + ++ L+ + L+ V A + G +V
Sbjct: 119 -----GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----AVAERSGIRPGDTVV 169
Query: 201 VFGLGAVGLAAAEGARIAGASRII-GVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259
VFG G +GL AA+ A++ GA+ ++ G ++ R + AK+ G VN E D + E++
Sbjct: 170 VFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA-VNGGEED--LAELVN 226
Query: 260 EMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTL 318
E+T+G G D +EC+G + + A E + G G V VG+ A + + E ++
Sbjct: 227 EITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSV 285
Query: 319 KGTF 322
G+
Sbjct: 286 IGSR 289
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306 |
| >gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 82/264 (31%), Positives = 123/264 (46%), Gaps = 54/264 (20%)
Query: 40 IKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTG 98
++I T++C +DL+ + G+T + GHEA G VE VG V L+VGD V+ F
Sbjct: 30 VRITTTAICGSDLHMYR--GRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNV 87
Query: 99 ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158
CG CR+C+ ++ +C L +NP R G + ++ P + G +EY V
Sbjct: 88 ACGRCRNCKRGLTGVC--LTVNPGR-----AGGAYGYVDMGP---YGGGQ--AEYLRV-- 133
Query: 159 GCVAKINPLAPLDKVCI----------------LSCGVSTGLGATLNVAKPERGSSVAVF 202
P A D + LS TG +A + G +VAVF
Sbjct: 134 -------PYA--DFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVF 183
Query: 203 GLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262
G G VGL AA A + GASR+ VD +R + A+ G ++ S+ D P+++ I +
Sbjct: 184 GAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIP-IDFSDGD-PVEQ-ILGLE 240
Query: 263 NGGVDRSVECTGNIDNMISAFECV 286
GGVDR+V+C G +E
Sbjct: 241 PGGVDRAVDCVG--------YEAR 256
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375 |
| >gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 104/360 (28%), Positives = 148/360 (41%), Gaps = 33/360 (9%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVR---IKIKYTSLCRTDLYFWESKGQTPL-FPRI 67
+A V G I+ EV P E I++ T +C +DL+ + +G +P P
Sbjct: 2 RATVIHGPGD---IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPY--RGVSPTRAPAP 56
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE GVVE VG V+ ++ GD V+ F G C CR+ + C G +
Sbjct: 57 IGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGG---FWGAFV 113
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
GQ GE V L T + S + L L V + TG A
Sbjct: 114 DGGQ------GEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDV------MGTGHHAA 161
Query: 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
+ A GS+V V G GAVGL A A+ GA RII + R R A++FG TD V
Sbjct: 162 V-SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIV-A 219
Query: 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
+ + V E+T G G D +EC G ++M A G G VGVP
Sbjct: 220 ERGEEAVARVR-ELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHGGVELD 277
Query: 307 TKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
+ + N L G G R LP ++D + ++ + +P E+ + + M
Sbjct: 278 VRELFFRN-VGLAG---GPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAM 333
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 6e-31
Identities = 95/377 (25%), Positives = 139/377 (36%), Gaps = 88/377 (23%)
Query: 19 AGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF----PRIFGHEAAG 74
A L +++ P EVR+++ +C +DL++++ G P + GHE +G
Sbjct: 5 AAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQ-HGGFGTVRLREPMVLGHEVSG 63
Query: 75 VVESVGEGVSDLEVGDHV-----LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
VVE+VG GV+ L G V P CG C +CR+ N+C +R
Sbjct: 64 VVEAVGPGVTGLAPGQRVAVNPSRP-----CGTCDYCRAGRPNLCLNMR----------- 107
Query: 130 GQSRFSINGEPVNHFLGTST--------FSEYTVVH-SGCVAKINPLAPLDKVCILSCGV 180
FLG++ F EY VV S CV L G+
Sbjct: 108 --------------FLGSAMRFPHVQGGFREYLVVDASQCVP-------------LPDGL 140
Query: 181 STGLGA----------TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230
S A +N A G V V G G +G AR AGA+ I+ D +
Sbjct: 141 SLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD 200
Query: 231 KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW 290
A+ G + VN + G D E +G + SA V G
Sbjct: 201 APLAVARAMGADETVNLARDP----LAAYAADKGDFDVVFEASGAPAALASALRVVRPG- 255
Query: 291 GVAVLVGVPSKDAVFMTKPINVL--NERTLKGTF-FGNYKPRTDLPSVVDMYMNKQLELE 347
G V VG+ P+N L E L+G+F F + V + ++++
Sbjct: 256 GTVVQVGMLGGPVPL---PLNALVAKELDLRGSFRFD-----DEFAEAVRLLAAGRIDVR 307
Query: 348 KFITHRIPFSEINKAFE 364
IT P E +AF
Sbjct: 308 PLITAVFPLEEAAEAFA 324
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 104/378 (27%), Positives = 156/378 (41%), Gaps = 62/378 (16%)
Query: 16 AWEAGK-----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK--------GQTP 62
K L ++DV V + E+ I++K +C +D++ +E+ G T
Sbjct: 27 TNLGSKVWRYPELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTE 86
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
FP + GHE +GVVE G+ V + E GD V CG CR CRS N C L
Sbjct: 87 -FPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNL----- 140
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL---DK---VCIL 176
+ FS +G F+EY V++ +IN L + DK L
Sbjct: 141 -------KELGFSADG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGAL 183
Query: 177 SCGVSTGLGATLNVA---KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233
S +P G+ V V+G G +GLAA A+ AGAS++I + S +R
Sbjct: 184 VEPTSVAYNGLFIRGGGFRP--GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERR 241
Query: 234 EEAKKFGVTDFVNTSE-HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWG 291
AK+ G N ++ D E + E+T G G D VE G I E G
Sbjct: 242 NLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAING 301
Query: 292 VAVLVG-----VPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLEL 346
V +G VP V + ++ + G G + PSV+ + + ++++
Sbjct: 302 KIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSG--HGIF------PSVIKLMASGKIDM 353
Query: 347 EKFITHRIPFSEINKAFE 364
K IT R P I +A +
Sbjct: 354 TKIITARFPLEGIMEAIK 371
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384 |
| >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 92/388 (23%), Positives = 141/388 (36%), Gaps = 90/388 (23%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
K A +A L E P +V IKI Y +C +DL+ ++ +P + GHE
Sbjct: 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHE 60
Query: 72 AAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G+V +VG V+ +VGD V + CG C C+S C
Sbjct: 61 IVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCP--------------- 105
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL-- 188
+ + NG+ + + ++++ VV V KI L C G T+
Sbjct: 106 KGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYS 160
Query: 189 ----NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239
N P G V V G+G AV A A GA + RS + E+A K
Sbjct: 161 PLKRNGVGP--GKRVGVVGIGGLGHLAVKFAKALGA------EVTAFSRSPSKKEDALKL 212
Query: 240 GVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECV---HDGW------ 290
G +F+ T + + M + G++D +I V HD
Sbjct: 213 GADEFIATKDPE--------AMK--------KAAGSLDLIID---TVSASHD-LDPYLSL 252
Query: 291 ----GVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLEL 346
G VLVG P + P+ + +++ G+ G K + L+
Sbjct: 253 LKPGGTLVLVGAPEEPLPVPPFPL-IFGRKSVAGSLIGGRK-----------ETQEMLDF 300
Query: 347 --EKFITHRI---PFSEINKAFEYMVKG 369
E I + P IN+A E + KG
Sbjct: 301 AAEHGIKPWVEVIPMDGINEALERLEKG 328
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 76/247 (30%), Positives = 106/247 (42%), Gaps = 30/247 (12%)
Query: 12 KAAVAWEAGK----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRI 67
KA V + G PL + +V V P EV IK++ +CRTDL+ E P P I
Sbjct: 2 KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
GHE G VE+VG GV+ VGD V +P CG+CR+CRS N+CD
Sbjct: 62 PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCD----------- 110
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGA 186
G V+ ++EY V I ++ L C G A
Sbjct: 111 ------NARFTGYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159
Query: 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246
L +A + G + ++G GA A + AR GA + RS + E A++ G D+
Sbjct: 160 -LKLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELG-ADWAG 216
Query: 247 TSEHDRP 253
S+ P
Sbjct: 217 DSDDLPP 223
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329 |
| >gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 80/358 (22%), Positives = 129/358 (36%), Gaps = 77/358 (21%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ----TPLFPRIFGHEAAGVVESVG 80
+++ P +V ++++ +C +DL + ++G+ P P GHE G V ++G
Sbjct: 9 VEEHPRPTPGPGQVLVRVEGCGVCGSDLPAF-NQGRPWFVYPAEPGGPGHEGWGRVVALG 67
Query: 81 EGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEP 140
GV L VGD V
Sbjct: 68 PGVRGLAVGDRVA----------------------------------------------- 80
Query: 141 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV---AKPERGS 197
L F+EY + + + L + LG LNV G
Sbjct: 81 ---GLSGGAFAEYDLADADHAVPLPSLLD-GQA-----FPGEPLGCALNVFRRGWIRAGK 131
Query: 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEV 257
+VAV G G +GL + A AGA R+I +DR R A++ G T+ V I E
Sbjct: 132 TVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEA--IVER 189
Query: 258 IAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV--LN 314
+ E+T G G D +E G+ + A E V + G V+ G +P+ N
Sbjct: 190 VRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDG----PRPVPFQTWN 244
Query: 315 ER--TLKGTFFGNYKPRT-DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG 369
+ L + + + V + + +L+L +TH P E+ AFE +
Sbjct: 245 WKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRR 302
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-27
Identities = 89/367 (24%), Positives = 139/367 (37%), Gaps = 62/367 (16%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIF 68
KA V E G P L + +V P EV +++K + D+ + P I
Sbjct: 2 KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G EAAGVV +VG GV+ +VGD V G +
Sbjct: 62 GSEAAGVVVAVGSGVTGFKVGDRVA----------------------------ALGGVGR 93
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
DG ++EY VV + + + ++ L T A
Sbjct: 94 DG------------------GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135
Query: 189 NVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
+ A + G +V V G G VG AA + A+ GA+ + V S K E K+ G +N
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL-ELLKELGADHVINY 194
Query: 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
E D E + E+T G GVD ++ G D ++ + G G V +G S
Sbjct: 195 REED--FVEQVRELTGGKGVDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVP 250
Query: 307 TKPINVLNER-TLKGTFFGNYKPRTDLP---SVVDMYMNKQLELEKFITHRIPFSEINKA 362
+ +L +R TL+G G+ P + D+ + +L+ I P +E A
Sbjct: 251 LNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPV--IDRVYPLAEAPAA 308
Query: 363 FEYMVKG 369
+++
Sbjct: 309 AAHLLLE 315
|
Length = 326 |
| >gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-27
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 206 AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG- 264
VGLAA + A+ GA+R+I VDRS ++ E AK+ G +N + D E + E+T G
Sbjct: 1 GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDED--FVERVRELTGGR 58
Query: 265 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFG 324
GVD ++C G + A E + G G V+VG+P V +L E T+ G+ G
Sbjct: 59 GVDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGG 117
Query: 325 NYK-PRTDLPSVVD 337
+ L +
Sbjct: 118 GREEFEEALELLAS 131
|
Length = 131 |
| >gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-27
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVF 96
EV +++K +C +DL+ + + P I GHE AG+VE VG GV+ L+VGD V+
Sbjct: 3 EVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVYP 62
Query: 97 TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVV 156
CG C CR N+C + GV L DG F+EY VV
Sbjct: 63 LIPCGKCAACREGRENLCPNGK---FLGVHL-DG------------------GFAEYVVV 100
Query: 157 HSGCVAKI 164
+ + +
Sbjct: 101 PARNLVPL 108
|
This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108 |
| >gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 27/242 (11%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KA E G PL + + +V P EV IK++ +C +D + E +PR+ GHE
Sbjct: 2 KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61
Query: 72 AAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G +++VGEGVS +VGD V + G CG C CR C+ ++ GV G
Sbjct: 62 VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVT---GVTRDGG 118
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP-LAPLDKVCILSCGVSTGLGATLN 189
++EY + + +A+I L + +L GV+T +
Sbjct: 119 -------------------YAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS 159
Query: 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249
AKP G VAV G+G +G A + A G R + + R S + + A+K G +++TS+
Sbjct: 160 GAKP--GDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK 216
Query: 250 HD 251
D
Sbjct: 217 ED 218
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333 |
| >gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 43/367 (11%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAM--EVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIF 68
KA V G P +++ ++ P+ EV +++K +L DL+ G P I
Sbjct: 2 KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G + AGVVE+VG GV++++ G V+ CG C +C + N+C
Sbjct: 62 GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCA------------- 108
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
++ I GE H G ++EY V + + I ++ T +
Sbjct: 109 ----QYGILGE---HVDG--GYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLV 159
Query: 189 NVAKPERGSSVAVFGLGA-VGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
A+ G +V V G G+ VG AA + A++ GA +I S + E AK+ G D+V
Sbjct: 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELG-ADYVID 217
Query: 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
+ ++EV GVD VE G + + + G G V G +
Sbjct: 218 YRKEDFVREVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCGATTGYEA--- 272
Query: 308 KPINV----LNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
PI++ + ++ G+ G + +L + + + +L+ I P E +A
Sbjct: 273 -PIDLRHVFWRQLSILGSTMGT---KAELDEA--LRLVFRGKLKPVIDSVFPLEEAAEAH 326
Query: 364 EYMVKGE 370
+ E
Sbjct: 327 RRLESRE 333
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342 |
| >gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-24
Identities = 74/268 (27%), Positives = 107/268 (39%), Gaps = 40/268 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KA + + I++V P EV IK+ Y LC DL + +P I GHE
Sbjct: 2 KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHE 61
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
G VE VGE V + GD V + G C +CRS C +
Sbjct: 62 VVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC----------------K 105
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 191
+R GE ++ F F+EY V + K+ P + I+ C L A
Sbjct: 106 NRLGY-GEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRG-LRRA 158
Query: 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT--- 247
++G +V V G G VG+ A + A+ GA ++I V S + + K+ D+V
Sbjct: 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYA--DYVIVGSK 215
Query: 248 -SEHDRPIQEVIAEMTNGGVDRSVECTG 274
SE + I GG D +E G
Sbjct: 216 FSEEVKKI---------GGADIVIETVG 234
|
Length = 334 |
| >gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 101/374 (27%), Positives = 160/374 (42%), Gaps = 60/374 (16%)
Query: 16 AWEAGK-PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF----PRIFGH 70
AW G L IQ ++ P +VR+++K +C +D+++ ++ + F P + GH
Sbjct: 21 AWLVGVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTM-RCADFVVKEPMVIGH 79
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRI--NPVRGVMLA 128
E AG++E VG V L VGD V C C C+ N+C ++ P
Sbjct: 80 ECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATP------- 132
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI--------LSCGV 180
++G N VVH + P + V + LS GV
Sbjct: 133 ------PVHGSLANQ-----------VVHPADLCFKLP----ENVSLEEGAMCEPLSVGV 171
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
A + PE ++V V G G +GL AR GA RI+ VD +R AK+ G
Sbjct: 172 HACRRANIG---PE--TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLG 226
Query: 241 VTDFVNTSEHDRPIQEVIAEMTN---GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG 297
+ V S + ++ + E+ GG+D S +C G M +A E G G LVG
Sbjct: 227 ADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVG 285
Query: 298 VPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFS 357
+ + MT P+ R + G ++ R P ++ + +++++ ITHR FS
Sbjct: 286 MGHNE---MTVPLTPAAAREVD--VVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFS 340
Query: 358 --EINKAFEYMVKG 369
E+ +AFE +G
Sbjct: 341 QKEVEEAFETSARG 354
|
Length = 364 |
| >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-23
Identities = 77/282 (27%), Positives = 113/282 (40%), Gaps = 37/282 (13%)
Query: 67 IFGHEAAGVVESVGEGVSD------LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
+ GHE G V ++ G + L +G V+ T CG C CR + CD LR
Sbjct: 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLR-- 58
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI-LSCG 179
G + ++E+ + +G P D V C
Sbjct: 59 -------KYGHEALDSGWPL------SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105
Query: 180 VSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239
+T + A L A +G V V G G +GL AA A AGA+R++ D S R E A F
Sbjct: 106 TATVM-AALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164
Query: 240 GVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
G T +E + + GVD ++E +G + + E + G G AVL G
Sbjct: 165 GATA---LAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG-- 218
Query: 300 SKDAVFMTKPINVLNERTLKG--TFFG--NYKPRTDLPSVVD 337
+VF P+ + E+ ++ T G NY+PR L V
Sbjct: 219 ---SVFPGGPVALDPEQVVRRWLTIRGVHNYEPR-HLDQAVR 256
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 |
| >gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 2e-23
Identities = 90/351 (25%), Positives = 144/351 (41%), Gaps = 50/351 (14%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82
L I++ + P A EVR+K+K +C +D + + +PR+ GHE GV+++VGEG
Sbjct: 12 LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71
Query: 83 VSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEP 140
V +G+ V PV + CG C C N+C L V GV DG
Sbjct: 72 VDAARIGERVAVDPVIS--CGHCYPCSIGKPNVCTSLV---VLGVH-RDG---------- 115
Query: 141 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVA 200
FSEY VV + +I P A D+ ++ + T P
Sbjct: 116 --------GFSEYAVVPAKNAHRI-PDAIADQYAVMVEPFTIAANVTGRT-GPTEQDVAL 165
Query: 201 VFGLGAVGLAAAEG-ARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259
++G G VGL + + +I DR +R AK+ G +N ++ P+ E +
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQE--PLGEALE 223
Query: 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM---TKPINVLNER 316
E + ++ T ID C AV + P+ V M ++P ++ ++
Sbjct: 224 E-------KGIKPTLIIDAA-----CHPSILEEAVTLASPAARIVLMGFSSEPSEIV-QQ 270
Query: 317 TLKGTFFGNYKPRTD---LPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
+ G + R + P V+D ++ EK ITH F + A E
Sbjct: 271 GITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIE 321
|
Length = 339 |
| >gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 72/366 (19%), Positives = 128/366 (34%), Gaps = 74/366 (20%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAM--EVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
KA E G P +++ +V P+ EV +K+ + DL E + P
Sbjct: 2 KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
I GH+ AGVV +VG GV+ +VGD V
Sbjct: 62 IPGHDVAGVVVAVGPGVTGFKVGDEVF--------------------------------- 88
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP--LAPLDKVCILSCGVSTGL 184
G + F+ G ++EY VV + +A P L+ + + G+ T
Sbjct: 89 ---GMTPFTRGG----------AYAEYVVVPADELALK-PANLSFEEAAALPLAGL-TAW 133
Query: 185 GATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243
A + + G +V + G G VG A + A+ GA R+I ++ + + G +
Sbjct: 134 QALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAANA-DFLRSLGADE 191
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA 303
++ ++ + GGVD ++ G + + + V G LV +
Sbjct: 192 VIDYTK-----GDFERAAAPGGVDAVLDTVGG-ETLARSLALVKPG---GRLVSIAG--- 239
Query: 304 VFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
R ++ F L + ++ +L + P + +A
Sbjct: 240 --PPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRP--VVDRVFPLEDAAEAH 295
Query: 364 EYMVKG 369
E + G
Sbjct: 296 ERLESG 301
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309 |
| >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 9e-22
Identities = 74/313 (23%), Positives = 111/313 (35%), Gaps = 79/313 (25%)
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
P G+ + G V VG GV+ + GD VF H
Sbjct: 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDR---VFCF----GPH----------------- 54
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
+E VV + + + P + T
Sbjct: 55 ----------------------------AERVVVPANLLVPLPDGLPPE------RAALT 80
Query: 183 GLGAT-LN---VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238
L AT LN A+P G VAV GLG VGL AA+ A+ AGA ++GVD + R E A+
Sbjct: 81 ALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298
G D V + E+ G D +E +G+ + +A + D G VLVG
Sbjct: 141 LGPADPVA--------ADTADEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGW 191
Query: 299 PSKDAVFMTKPINVLNERTLKGT---FFGNYKPRTDLPSVVDMYMNKQL----ELEKFIT 351
+ + + + ++ + G Y ++ L LE IT
Sbjct: 192 YGLKPLLLGEEFH-FKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALIT 250
Query: 352 HRIPFSEINKAFE 364
HR+PF + +A+
Sbjct: 251 HRVPFEDAPEAYR 263
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 |
| >gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 88/381 (23%), Positives = 137/381 (35%), Gaps = 75/381 (19%)
Query: 12 KAAVAWEA-GKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK--GQTPLFPRIF 68
KAAV G L++ DV V P EV +K+K +L D W+ + G P +P I
Sbjct: 2 KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G + AG V VG GV+ +VGD V G
Sbjct: 59 GCDFAGTVVEVGSGVTRFKVGDRV-------AGFVHGGNP-------------------- 91
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST---GLG 185
+ F EY V + AKI ++ L G+ T L
Sbjct: 92 --------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137
Query: 186 ATLNVAKP-------ERGSSVAVFGLG--AVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236
L + P +G V ++G G +VG A + A++AG ++I S K F+
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDLV 194
Query: 237 KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWG--VAV 294
K G + HD + E I T G + +++C ++ E + G +
Sbjct: 195 KSLGADAVFDY--HDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVS 252
Query: 295 LVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRI 354
L+ VP + V + L T FG + V Y+ + LE K H +
Sbjct: 253 LLPVPEETE----PRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPV 308
Query: 355 P-----FSEINKAFEYMVKGE 370
+ + + + KG+
Sbjct: 309 RVVEGGLEGVQEGLDLLRKGK 329
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339 |
| >gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 71/264 (26%), Positives = 106/264 (40%), Gaps = 58/264 (21%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-SKGQTPLFPRIF 68
+A + G P L I+++ V P A EV I+++ L R D F + + P P
Sbjct: 2 RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARL 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G+EAAGVVE+VG GV+ VGD V +
Sbjct: 62 GYEAAGVVEAVGAGVTGFAVGDRVSVIPA------------------------------- 90
Query: 129 DGQSRFSINGEPVNHFLGTS-TFSEYTVVHSGCVAKINPLAPLDKVCILSCGVS--TGLG 185
LG T++EY +V + V K+ L V + + T G
Sbjct: 91 --------------ADLGQYGTYAEYALVPAAAVVKLPDG--LSFVEAAALWMQYLTAYG 134
Query: 186 ATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
A + +A G SV + +VGLAA + A AGA +I R+S++ + G
Sbjct: 135 ALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHV 193
Query: 245 VNTSEHDRPIQEVIAEMTNG-GVD 267
+ T E D + + +T G GVD
Sbjct: 194 IVTDEED--LVAEVLRITGGKGVD 215
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328 |
| >gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 93/372 (25%), Positives = 147/372 (39%), Gaps = 66/372 (17%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSLCRTDL-------YFWESKGQTPLF--PRIFGHEAAGV 75
+++V V P E+ +K++ +C D+ FW + Q P P I GHE G
Sbjct: 14 LEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGR 73
Query: 76 VESVGEGVSD--LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRI----NPVRGVMLAD 129
V +GEG + ++VGD V+ C +CR C MC + N V G M
Sbjct: 74 VVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGM--- 130
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGVSTGLGA 186
E + F + +VH K+ P + + L+C +
Sbjct: 131 --------AEYM-------RFPKEAIVH-----KVPDDIPPEDAILIEPLACALH----- 165
Query: 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246
++ A + V + G G +GL AR+ ++I +D +R A+KFG +N
Sbjct: 166 AVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLN 225
Query: 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNID------NMISAFECVHDGWGVAVLVGVP 299
E D + E I E+T G G D +E TG+ NMI G V V
Sbjct: 226 PPEVD--VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-------GRFVEFSVF 276
Query: 300 SKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEI 359
I E + G+ G Y P +D+ + +L + +TH+ P +
Sbjct: 277 GDPVTVDWSIIGDRKELDVLGSHLGPYC----YPIAIDLIASGRLPTDGIVTHQFPLEDF 332
Query: 360 NKAFEYMVKGEG 371
+AFE M +G+
Sbjct: 333 EEAFELMARGDD 344
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350 |
| >gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 93/368 (25%), Positives = 157/368 (42%), Gaps = 53/368 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY-----FWESKGQTPLFPR 66
KAAV + ++ + + P + E +K++Y +C TDL+ F + G R
Sbjct: 2 KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG------R 55
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
I GHE G+V+ VG GV+ L+VGD V + F CG C +C + +C R V
Sbjct: 56 ILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC--------RSV 107
Query: 126 MLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI-NPLAPLDKVCILSCGVSTGL 184
A ++++G +E +V + K+ L P I GV+T
Sbjct: 108 KNAG----YTVDG----------GMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT-- 151
Query: 185 GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
+ V+ + G +A++G G +G A + A+ +++I VD + + AK+ G
Sbjct: 152 YKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLT 211
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N+ + + ++I E GG +V A + V G G V VG+P +++
Sbjct: 212 INSKRVE-DVAKIIQE-KTGGAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPP-ESM 267
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELE---KFITHRIPFSEINK 361
++ P VL+ + G+ G R DL Q E P +IN
Sbjct: 268 DLSIPRLVLDGIEVVGSLVGT---RQDLEEAF------QFGAEGKVVPKVQLRPLEDIND 318
Query: 362 AFEYMVKG 369
F+ M +G
Sbjct: 319 IFDEMEQG 326
|
Length = 338 |
| >gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 92/358 (25%), Positives = 142/358 (39%), Gaps = 63/358 (17%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPRIFGHEAAGVVESV 79
L + + V P EV +++ SL DL G+ P P I + AG V +V
Sbjct: 15 LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLI--LNGRYPPPVKDPLIPLSDGAGEVVAV 72
Query: 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSR---FSI 136
GEGV+ +VGD V+P F N + G A+ ++ I
Sbjct: 73 GEGVTRFKVGDRVVPTF---------------------FPNWLDGPPTAEDEASALGGPI 111
Query: 137 NGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERG 196
+G +EY V+ + + ++ L C T A + + G
Sbjct: 112 DG----------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPG 161
Query: 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQE 256
+V V G G V L A + A+ AGA R+I S ++ E AK G +N +E
Sbjct: 162 DTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPDWGEE 220
Query: 257 VIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-- 313
V+ ++T G GVD VE G + + + V G GV L+G S P+ +L
Sbjct: 221 VL-KLTGGRGVDHVVE-VGGPGTLAQSIKAVAPG-GVISLIGFLSGFEA----PVLLLPL 273
Query: 314 --NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKF---ITHRIPFSEINKAFEYM 366
TL+G G+ R + MN+ +E + I PF E +A+ Y+
Sbjct: 274 LTKGATLRGIAVGS---RAQFEA-----MNRAIEAHRIRPVIDRVFPFEEAKEAYRYL 323
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336 |
| >gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-18
Identities = 89/360 (24%), Positives = 151/360 (41%), Gaps = 46/360 (12%)
Query: 18 EAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL-YFWESKGQTPLFPRIFGHEAAGVV 76
E GKP++ VE+ A +V +K+ +C TDL Y++ P GHE +G V
Sbjct: 6 EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65
Query: 77 ESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSI 136
G G + +G V+ CG+C C++ +C R + G + G
Sbjct: 66 IQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTIC---RAQKMPGNDMQGG------ 115
Query: 137 NGEPVNHFLGTSTFSEYTVVHSG--CVAKINPLA----PLDKVCILSCGVSTGLGATLNV 190
F+ + VV + CV LA PL+ V +++ V+T A +
Sbjct: 116 -------------FASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ- 161
Query: 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250
A ++G V V G G VG + A+ GA+ ++ +D ++ E K FG +N +
Sbjct: 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDK 220
Query: 251 D-RPIQEVIAEMTNGGVDRS-----VECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
R ++++I RS EC+G+ SA + G G V+VG
Sbjct: 221 SAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTE 279
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDL-PSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
+ + + R L GN+ D P+ +D+ ++ +++L F+ R P +I F
Sbjct: 280 YRLSNLMAFHARAL-----GNWGCPPDRYPAALDLVLDGKIQLGPFVERR-PLDQIEHVF 333
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349 |
| >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 9e-17
Identities = 81/333 (24%), Positives = 130/333 (39%), Gaps = 55/333 (16%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVF 96
+V +K+ + LC +D+ G +P GHE +G VE+VG GV DL GD V V
Sbjct: 27 DVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85
Query: 97 TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTF---SEY 153
C C C ++C F+G+ +EY
Sbjct: 86 LLPCFTCPECLRGFYSLCAKY-------------------------DFIGSRRDGGNAEY 120
Query: 154 TVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAE 213
VV + + P++ + ++ GL A ++A+ G +V + G G +GL A +
Sbjct: 121 IVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQ 178
Query: 214 GARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP-IQEVIAE-------MTNGG 265
A GA + +D +S++ AK G N+ E P IQ V+ E + G
Sbjct: 179 CAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238
Query: 266 VDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NERTLKGTFF 323
V ++VE I + LVG D + + E T+ G++
Sbjct: 239 VPQTVELAIEIAGPRAQL----------ALVGTLHHDLHLTSATFGKILRKELTVIGSWM 288
Query: 324 GNYK---PRTDLPSVVDMYMNKQLELEKFITHR 353
NY P + + + ++L LE I HR
Sbjct: 289 -NYSSPWPGQEWETASRLLTERKLSLEPLIAHR 320
|
Length = 347 |
| >gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 89/387 (22%), Positives = 131/387 (33%), Gaps = 88/387 (22%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
+A E G P L + D+ V P EV +++ + + D Y
Sbjct: 2 RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61
Query: 70 H-EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
+ AGVVE+VGEGV L+VGD V+ G R
Sbjct: 62 GSDGAGVVEAVGEGVDGLKVGD---RVWLTNLGWGRR----------------------- 95
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
T +EY VV P D++ L GVS GA L
Sbjct: 96 ------------------QGTAAEYVVV------------PADQLVPLPDGVSFEQGAAL 125
Query: 189 NV------------AKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
+ A + G +V V G GAVG AA + AR AGA R+I S++ E
Sbjct: 126 GIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL 184
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAV 294
++ G N D + + I T G GVD +E N N+ + + G + V
Sbjct: 185 VRQAGADAVFNYRAED--LADRILAATAGQGVDVIIEVLAN-VNLAKDLDVLAPGGRIVV 241
Query: 295 LVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTD-----LPSVVDMYMNKQLELEKF 349
+ + PIN L + Y + ++ + L
Sbjct: 242 YGSGGLRGTI----PINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPV-- 295
Query: 350 ITHRIPFSEINKAFEYMVKGEGLRCII 376
I P E A E + G + ++
Sbjct: 296 IAREYPLEEAAAAHEAVESGGAIGKVV 322
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 72/261 (27%), Positives = 104/261 (39%), Gaps = 57/261 (21%)
Query: 12 KAAVAWEAGKPLIIQDVEVAP-PQAM-EVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIF 68
KA V E G P + EV P P A EVRI+++ + DL + K Q P P +
Sbjct: 2 KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G E AGVVE+VGEGV+ +VGD V
Sbjct: 62 GSEVAGVVEAVGEGVTGFKVGDRV-------VA--------------------------- 87
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
G F+E VV + V + ++ L T A +
Sbjct: 88 ---------------LTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALV 132
Query: 189 NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
A+ + G +V V G G VGLAA + A+ GA R+I S ++ A+ G ++
Sbjct: 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDY 191
Query: 248 SEHDRPIQEVIAEMTNG-GVD 267
+ D ++E + +T G GVD
Sbjct: 192 RDPD--LRERVKALTGGRGVD 210
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 77/369 (20%), Positives = 125/369 (33%), Gaps = 71/369 (19%)
Query: 14 AVAWEAGKP--LIIQDVEVAPPQAM--EVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
V G P L++ +VEV P EV +K+ S+ D + L FP
Sbjct: 1 VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
I G + AG V +VG GV+ +VGD V G G
Sbjct: 61 IPGMDFAGEVVAVGSGVTRFKVGDEVF----GRLPPKGG------------------G-- 96
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP-LAPLDKVCILSCGVSTGLG 185
+EY V +AK ++ + + G+ T L
Sbjct: 97 ----------------------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGL-TALQ 133
Query: 186 ATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
A + K + G V + G G VG A + A+ GA + GV S++ E + G +
Sbjct: 134 ALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVC-STRNAELVRSLGADEV 191
Query: 245 VNTSEHDRPIQEVIAEMTNGGV-DRSVECTGNIDNMISAFECVHDGW--GVAVLVGVPSK 301
++ + D +A G D + GN S + G V VG
Sbjct: 192 IDYTTED-----FVALTAGGEKYDVIFDAVGNSP--FSLYRASLALKPGGRYVSVGGGPS 244
Query: 302 DAVFMTKPINVLNERTLKGTFFGNYKP-RTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
+ + + + + F KP DL + ++ +L+ I P +
Sbjct: 245 GLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKP--VIDSVYPLEDAP 302
Query: 361 KAFEYMVKG 369
+A+ + G
Sbjct: 303 EAYRRLKSG 311
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 102/392 (26%), Positives = 144/392 (36%), Gaps = 81/392 (20%)
Query: 14 AVAWEAGKP-LIIQDVEVAPPQAMEVRIKIKYTSLCRTD------LYFWESKGQTPLFPR 66
A+A + GKP + + D+ P EV ++ +C TD Y G+ L
Sbjct: 3 AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFL--- 59
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMC---DLLRINPVR 123
+ GHEA GVVE VG+G S L GD V+P G C +CR + C + R
Sbjct: 60 VLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT----ER 114
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
G+ G R +P EY V K+ P L V +L
Sbjct: 115 GIKGLHGFMREYFVDDP-----------EYLV-------KVPP--SLADVGVL------- 147
Query: 184 LGATLNVAK-------------PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230
L V K V G G +GL AA R+ G + ++R
Sbjct: 148 LEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRD 206
Query: 231 KRFEEAK---KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+A + G T +VN+S+ P+ EV G D +E TG A +
Sbjct: 207 PPDPKADIVEELGAT-YVNSSKT--PVAEVKLV---GEFDLIIEATGVPPLAFEALPALA 260
Query: 288 DGWGVAVLVGVPSKDAVFM--TKPIN---VLNERTLKGTFFGNYKPRTDLPSVVDMY--M 340
GV +L GVP F +N VL + L G+ N + V+
Sbjct: 261 PN-GVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN---KRHFEQAVEDLAQW 316
Query: 341 NKQLE--LEKFITHRIPFSEINKAFEYMVKGE 370
+ LE+ IT R+P E +A GE
Sbjct: 317 KYRWPGVLERLITRRVPLEEFAEALTEKPDGE 348
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355 |
| >gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-15
Identities = 91/346 (26%), Positives = 143/346 (41%), Gaps = 56/346 (16%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHV-LPV 95
+V IK+ Y +C TDL+ ++ +P + GHE G V VG VS VGD V + V
Sbjct: 36 DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95
Query: 96 FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTV 155
G CG+C C+SD+ C+ RI V +G+P F+ V
Sbjct: 96 IVGCCGECSPCKSDLEQYCN-KRIWSYNDVY---------TDGKPTQ-----GGFASAMV 140
Query: 156 VHSGCVAKI-NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEG 214
V V KI +AP +L GV T + + G + GLG VG +
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI 199
Query: 215 ARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273
A+ G + + S K+ EEA + G D++ +S+ AEM E
Sbjct: 200 AKAMG-HHVTVISSSDKKREEALEHLGADDYLVSSD--------AAEMQ--------EAA 242
Query: 274 GNIDNMISAFECVH-----------DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTF 322
++D +I H D G +L+GV + F+T P+ +L + + G+F
Sbjct: 243 DSLDYIIDTVPVFHPLEPYLSLLKLD--GKLILMGVINTPLQFVT-PMLMLGRKVITGSF 299
Query: 323 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK 368
G+ K + +++ K L + + +N AFE + K
Sbjct: 300 IGSMK---ETEEMLEFCKEKGL---TSMIEVVKMDYVNTAFERLEK 339
|
Length = 357 |
| >gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 91/364 (25%), Positives = 137/364 (37%), Gaps = 72/364 (19%)
Query: 14 AVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAA 73
A+ + G L ++D+ P E +++ +C TDL + KG P FP + GHE
Sbjct: 3 ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIY--KGYYP-FPGVPGHEFV 59
Query: 74 GVVESVGEG--VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
G+VE E V VG+ + CG C +CR + C P R V+ G
Sbjct: 60 GIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC------PNRTVL---GI 105
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG-------L 184
+G F+EY PL+ + ++ V L
Sbjct: 106 VDR--DG----------AFAEYLT------------LPLENLHVVPDLVPDEQAVFAEPL 141
Query: 185 GATLNV---AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241
A L + G VAV G G +GL A+ + G ++ V R S++ A++ GV
Sbjct: 142 AAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGV 200
Query: 242 TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301
+ AE GG D VE TG+ + A V G VL +
Sbjct: 201 E----------TVLPDEAESEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYAG 249
Query: 302 DAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINK 361
A F V+NE TL G+ G + + ++++ IT P E +
Sbjct: 250 PASFDLTKA-VVNEITLVGSRCG------PFAPALRLLRKGLVDVDPLITAVYPLEEALE 302
Query: 362 AFEY 365
AFE
Sbjct: 303 AFER 306
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 70/303 (23%), Positives = 110/303 (36%), Gaps = 60/303 (19%)
Query: 16 AWEAGKP-----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
AW KP L ++++E+ P A EV +K+ L D +P + G
Sbjct: 3 AWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGV 62
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
+ AGVV +VG V+ +VGD V + G
Sbjct: 63 DGAGVVVAVGAKVTGWKVGDRVA----------------------------YHASLARGG 94
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
+F+EYTVV + V + ++ L C T A
Sbjct: 95 ------------------SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKK 136
Query: 191 AKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249
+ E G ++ + G G VG A + A+ AG R+I S + FE K G ++
Sbjct: 137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVID--Y 192
Query: 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP--SKDAVFM 306
+D + E I E+T G GVD ++ G + + + + + G P S D F
Sbjct: 193 NDEDVCERIKEITGGRGVDAVLDTVGG-ETAAALAPTLAFNGHLVCIQGRPDASPDPPFT 251
Query: 307 TKP 309
Sbjct: 252 RAL 254
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325 |
| >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 76/374 (20%), Positives = 128/374 (34%), Gaps = 69/374 (18%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPR-- 66
+AAV + PL+++DV P +V +K+ +C +DL+ P
Sbjct: 2 RAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLM 59
Query: 67 ------IFGHEAAGVVESVGEGVS-DLEVGDHV--LPVFTGECGDCRHCRSDVSNMCDLL 117
+ GHE G V G G L+VG V LP+ CG C +S
Sbjct: 60 DLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLL--CGQGASCGIGLSPE---- 113
Query: 118 RINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILS 177
+ G ++EY ++ + ++ ++ +
Sbjct: 114 -----------------APGG-----------YAEYMLLSEALLLRVPDGLSMEDAALTE 145
Query: 178 CGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237
++ GL A + A+ G V G G +GLA + G I+ D S +R A
Sbjct: 146 -PLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALAL 203
Query: 238 KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV--ECTGNIDNMISAFECVHDGWGVAVL 295
G V+ + GG +V EC G + E G G V+
Sbjct: 204 AMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVV 262
Query: 296 VGV-PSKDAVF----MTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFI 350
VGV D + + K + + F Y P + +D ++++ +
Sbjct: 263 VGVCMESDNIEPALAIRKELTL--------QFSLGYTPE-EFADALDALAEGKVDVAPMV 313
Query: 351 THRIPFSEINKAFE 364
T + + AFE
Sbjct: 314 TGTVGLDGVPDAFE 327
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 29/247 (11%)
Query: 38 VRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFT 97
V +K+ T++C +D + + P + GHE G V G V +++GD V F
Sbjct: 36 VILKVVTTNICGSDQHMVRGRTTAPT-GLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFN 94
Query: 98 GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH 157
CG CR+C+ + +C L +NP R A + G ++G SEY +V
Sbjct: 95 IACGRCRNCKEGHTGVC--LNVNPAR----AGAAYGYVDMGG----WVGGQ--SEYVMVP 142
Query: 158 SGCVAKINPLAPLDK---------VCILSCGVSTGL-GATLNVAKPERGSSVAVFGLGAV 207
A N L D+ + +LS TG GA P GS+V + G G V
Sbjct: 143 ---YADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGP--GSTVYIAGAGPV 197
Query: 208 GLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVD 267
GLAAA A++ GA+ +I D + R +A+ FG + V+ S+ +++ + VD
Sbjct: 198 GLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVD 256
Query: 268 RSVECTG 274
+V+C G
Sbjct: 257 CAVDCVG 263
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393 |
| >gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-13
Identities = 90/388 (23%), Positives = 138/388 (35%), Gaps = 114/388 (29%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIF 68
KA + G P L +DV V P EV ++ + D YF G PL P +
Sbjct: 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF--RSGLYPLPLPFVL 58
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G E AGVVE+VG GV+ +VGD V + G
Sbjct: 59 GVEGAGVVEAVGPGVTGFKVGDRV--AYAG------------------------------ 86
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
++EY VV + + K+ G+S A L
Sbjct: 87 -----------------PPGAYAEYRVVPASRLVKLPD------------GISDETAAAL 117
Query: 189 ------------NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
+ G +V V G VGL + A+ GA +IG S ++ E
Sbjct: 118 LLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAEL 176
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAV 294
A+ G +N + D E + E+T G GVD + G D + + + G V
Sbjct: 177 ARAAGADHVINYRDED--FVERVREITGGRGVDVVYDGVG-KDTFEGSLDSLRPR-GTLV 232
Query: 295 LVG-----VP-------SKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPS----VVDM 338
G VP SK ++F+T+P + F R +L + + D
Sbjct: 233 SFGNASGPVPPFDLLRLSKGSLFLTRP-----------SLFHYIATREELLARAAELFDA 281
Query: 339 YMNKQLELEKFITHRIPFSEINKAFEYM 366
+ +L++E I R P ++ +A +
Sbjct: 282 VASGKLKVE--IGKRYPLADAAQAHRDL 307
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320 |
| >gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82
L ++DV+ P EV I++K + D + P+ P I G E AGVVE VG+
Sbjct: 14 LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPGAEFAGVVEEVGDH 72
Query: 83 VSDLEVGDHVL---PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGE 139
V ++ GD V+ VF G C C S +C N ++++G
Sbjct: 73 VKGVKKGDRVVVYNRVF---DGTCDMCLSGNEMLCR----NGGIIGVVSNG--------- 116
Query: 140 PVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSV 199
++EY VV + KI + L T A L A G +V
Sbjct: 117 ---------GYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA-LKTAGLGPGETV 166
Query: 200 AVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230
VFG G G+ A + A++ GA +I V R
Sbjct: 167 VVFGASGNTGIFAVQLAKMMGA-EVIAVSRKD 197
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 9e-12
Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 22/217 (10%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHV-LPV 95
+V +KI Y +C +DL+ +++ +P + GHE G+V +G+ V + GD V + V
Sbjct: 39 DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98
Query: 96 FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYT- 154
G C C C D+ N C + F+ N + GT + Y+
Sbjct: 99 IVGSCKSCESCDQDLENYCP---------------KMIFTYNSIGHD---GTKNYGGYSD 140
Query: 155 --VVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAA 212
VV V + PLD L C T E G + V GLG +G A
Sbjct: 141 MIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200
Query: 213 EGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249
+ + G + S+K E + G F+ +++
Sbjct: 201 KIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTD 237
|
Length = 360 |
| >gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 76/372 (20%), Positives = 139/372 (37%), Gaps = 82/372 (22%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
KA V + G P L ++++ + P+ V I++K L R++++ + + FPR+ G
Sbjct: 2 KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
EA G VE G G V + M + R
Sbjct: 62 IEAVGEVEEAPGG--TFTPGQRV-----------------ATAMGGMGR----------- 91
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGA--- 186
+ +G +++EYT+V + V I+ ++ L T G+
Sbjct: 92 -----TFDG----------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136
Query: 187 TLNVAKPE----RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
+L + + RG + +V GL A+ LA A GA + + RS +R K+ G
Sbjct: 137 SLGLQPGDTLLIRGGTSSV-GLAALKLAKALGATVTATT------RSPERAALLKELGAD 189
Query: 243 D-FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN--IDNMISAFECVHDGWGVAVLVGVP 299
+ ++ ++ GG D+ +E G + + + + G G+ + G+
Sbjct: 190 EVVIDDGAIAEQLRAA-----PGGFDKVLELVGTATLKD---SLRHLRPG-GIVCMTGLL 240
Query: 300 SKDAVFMT-KPINVL---NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRI- 354
P++ + TL G P+T L + D L++ ++
Sbjct: 241 GGQWTLEDFNPMDDIPSGVNLTLTG-SSSGDVPQTPLQELFDFVAAGHLDI---PPSKVF 296
Query: 355 PFSEINKAFEYM 366
F EI +A YM
Sbjct: 297 TFDEIVEAHAYM 308
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320 |
| >gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 3e-11
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 35/338 (10%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHV-LPV 95
+V +KI + +C +DL+ ++ +P I GHE G+ VG+ V+ + GD V + V
Sbjct: 33 DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92
Query: 96 FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTV 155
G C C C D+ N C + F+ N + +S+ V
Sbjct: 93 IIGSCQSCESCNQDLENYCP---------------KVVFTYNSRSSDGTRNQGGYSDVIV 137
Query: 156 VHSGCVAKINPLAPLDKVCILSC-GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEG 214
V V I P D L C G++ E G + V GLG +G A +
Sbjct: 138 VDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKI 197
Query: 215 ARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273
+ G R+ + RSS++ EA + G F+ T++ + + V G +D ++
Sbjct: 198 GKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAV------GTMDFIIDTV 250
Query: 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLP 333
++ F + G V +G+P K P+ VL + + G+ G K ++
Sbjct: 251 SAEHALLPLFSLLKVS-GKLVALGLPEKPLDLPIFPL-VLGRKMVGGSQIGGMKETQEML 308
Query: 334 SVVDMY-MNKQLELEKFITHRIPFSEINKAFEYMVKGE 370
+ + +EL I S+IN A + + K +
Sbjct: 309 EFCAKHKIVSDIEL-------IKMSDINSAMDRLAKSD 339
|
Length = 375 |
| >gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 55/233 (23%)
Query: 37 EVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVF 96
EV +++K L D+ + G P G E +G+V VG GV+ L+VGD V+
Sbjct: 2 EVEVEVKAAGLNFRDVLV--ALGLLPGDETPLGLECSGIVTRVGSGVTGLKVGDRVM--- 56
Query: 97 TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVV 156
L F+ + V
Sbjct: 57 -----------------------------------------------GLAPGAFATHVRV 69
Query: 157 HSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF-GLGAVGLAAAEGA 215
+ V KI ++ L T A +++A+ ++G SV + G VG AA + A
Sbjct: 70 DARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLA 129
Query: 216 RIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVD 267
+ GA V KR + G D + +S D + I T G GVD
Sbjct: 130 QHLGAEVFATVGSEEKREFLRELGGPVDHIFSS-RDLSFADGILRATGGRGVD 181
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293 |
| >gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
KA V G P +++V P +V +++ + + D +G P
Sbjct: 2 KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKI--RRGGAAARPPLPA 59
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
I G + AGVVE+VGEGV+ VGD V
Sbjct: 60 ILGCDVAGVVEAVGEGVTRFRVGDEV 85
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326 |
| >gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 53/259 (20%), Positives = 85/259 (32%), Gaps = 62/259 (23%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-----SKGQTPLFPRIFGHEAAGVVE 77
L I + P+ +V IK+ + R D + G + I G E AG VE
Sbjct: 16 LKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE----ILGLEVAGYVE 71
Query: 78 SVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSIN 137
VG V + GD V+ + G
Sbjct: 72 DVGSDVKRFKEGDRVMALLPG--------------------------------------- 92
Query: 138 GEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGS 197
++EY V H G V I ++ + T ++G
Sbjct: 93 ----------GGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQ 142
Query: 198 SVAVF-GLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQE 256
SV + G VG AAA+ A GA+ II S ++ + KK + + +
Sbjct: 143 SVLIHAGASGVGTAAAQLAEKYGAATIITTS-SEEKVDFCKKLAAIILIRYPD-EEGFAP 200
Query: 257 VIAEMTNG-GVDRSVECTG 274
+ ++T GV+ ++C G
Sbjct: 201 KVKKLTGEKGVNLVLDCVG 219
|
Length = 334 |
| >gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 42/294 (14%)
Query: 38 VRIKIKYTSLCRTDLYFWESKGQTPLF----PRIFGHEAAGVVESVGEGVSDLEVGDHVL 93
++I +C +DL++++ +G+ F P + GHE G + S L+ G V
Sbjct: 30 TLVQITRGGICGSDLHYYQ-EGKVGNFVIKAPMVLGHEVIGKIVHSDS--SGLKEGQTVA 86
Query: 94 PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFS--INGEPVNHFLGTSTFS 151
+ CG C++C S N C +R G + + ++G F+
Sbjct: 87 INPSKPCGHCKYCLSHNENQCTTMRFF---------GSAMYFPHVDG----------GFT 127
Query: 152 EYTVVHSG-CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLA 210
Y VV + C+ P +KV + ++ + A + A +G V V G+G +G
Sbjct: 128 RYKVVDTAQCIPY--PEKADEKVMAFAEPLAVAIHA-AHQAGDLQGKRVFVSGVGPIGCL 184
Query: 211 AAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270
+ GA+ I+ D S + A++ G VN + + AE G D S
Sbjct: 185 IVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQ--NDDLDHYKAE--KGYFDVSF 240
Query: 271 ECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NERTLKGTF 322
E +G+ ++ + E V GV V VG+ F P+ L E +LKG+F
Sbjct: 241 EVSGHPSSINTCLE-VTRAKGVMVQVGMGGAPPEF---PMMTLIVKEISLKGSF 290
|
Length = 343 |
| >gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 16 AWEAGKPLIIQD-------VEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF-PRI 67
AWE +P I+D V P E+ ++++ +CRTDL+ S+G P+ PR+
Sbjct: 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHV--SEGDLPVHRPRV 58
Query: 68 F-GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMC 114
GHE G V G VGD V + CG CR+CR N+C
Sbjct: 59 TPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLC 107
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329 |
| >gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 21 KPLIIQDVEVA--PPQAMEVRIKIKYTSLCRTDLYFWESKGQ----TPLFPRIFGHEAAG 74
PL+++ V + PP EV +++ + +DL G PL P + G+E G
Sbjct: 10 LPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLI--TISGAYGSRPPL-PAVPGNEGVG 66
Query: 75 VVESVGEGVSDLEVGDHVLPVFTG 98
VV VG GVS L VG VLP+
Sbjct: 67 VVVEVGSGVSGLLVGQRVLPLGGE 90
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323 |
| >gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 12 KAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFW---ESKGQTPLFP 65
+AAV + G P L I +V P A EV ++ + + DL W + G P P
Sbjct: 2 RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59
Query: 66 RIFGHEAAGVVESVGEGVSDLEVGDHV 92
I G EA GVV++VGEGV L+VG V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQVGQRV 86
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 29 EVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87
EVAPP EVRI+++ SL DL T P +P G EA+GVV +VG V+ L
Sbjct: 1 EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60
Query: 88 VGDHVLPVFTGE 99
VGD V+ TGE
Sbjct: 61 VGDEVI-AGTGE 71
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303 |
| >gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSL------CRTDLYFWESKGQTPLFPRIFGHEAAGVVES 78
++ + P + EVR++++ L R LY P P + G E AG VE+
Sbjct: 16 VEKEALPEPSSGEVRVRVEACGLNFADLMARQGLY-----DSAPKPPFVPGFECAGTVEA 70
Query: 79 VGEGVSDLEVGDHVL 93
VGEGV D +VGD V+
Sbjct: 71 VGEGVKDFKVGDRVM 85
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 58/260 (22%), Positives = 93/260 (35%), Gaps = 71/260 (27%)
Query: 37 EVRIKIKYTSLCRTDL-----YFWESKGQTPLFPRIFGHEAAGVVESVGEGV-SDLEVGD 90
E+ +K+ +L DL Y + K + + G + +GV+ VG V S+ +VGD
Sbjct: 30 EIVVKVHAAALNPVDLKLYNSYTFHFKVK----EKGLGRDYSGVIVKVGSNVASEWKVGD 85
Query: 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNH------- 143
V CG H + L ++P + + SI +P N
Sbjct: 86 EV-------CGIYPHPYGGQGTLSQYLLVDP--------KKDKKSITRKPENISLEEAAA 130
Query: 144 ---FLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVA 200
LGT+ Y ++ L P KV +L G + +SV
Sbjct: 131 WPLVLGTA----YQILED----LGQKLGPDSKVLVL--------GGS---------TSV- 164
Query: 201 VFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR--PIQEVI 258
G A+ LA ++G SS+ E KK G F++ H ++ V+
Sbjct: 165 --GRFAIQLAKNHYN----IGTVVGTC-SSRSAELNKKLGADHFIDYDAHSGVKLLKPVL 217
Query: 259 -AEMTNGGVDRSVECTGNID 277
G D ++C G D
Sbjct: 218 ENVKGQGKFDLILDCVGGYD 237
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352 |
| >gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 25 IQDVEVAPPQAMEVRIKIKYTSLCRTDL------YFWESKGQTPLFPRIFGHEAAGVVES 78
I DV V P EV +K ++ + +D+ Y G P F G E G V +
Sbjct: 20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYD---PGVKPPFD--CGFEGVGEVVA 74
Query: 79 VGEGVSDLEVGDHV 92
VGEGV+D +VGD V
Sbjct: 75 VGEGVTDFKVGDAV 88
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 8e-07
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFP---R 66
KA V E G P L + +V P EV I++ + R DL + +G P P
Sbjct: 2 KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLL--QRQGLYPPPPGASD 59
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
I G E AGVV +VG GV+ +VGD V
Sbjct: 60 ILGLEVAGVVVAVGPGVTGWKVGDRV 85
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 20 GKPLIIQDVEVAP--PQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVE 77
G P ++Q VE P P EV+++ K + D Y P P G EAAGVV
Sbjct: 11 GGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVS 70
Query: 78 SVGEGVSDLEVGDHV 92
VG GV ++VGD V
Sbjct: 71 KVGSGVKHIKVGDRV 85
|
Length = 327 |
| >gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 12 KAAVAWEAGK---PLIIQDVEVAPPQA--MEVRIKIKYTSLCRTDLYFWESKGQTPLFPR 66
KA + P + D+E+ P ++ ++++ S+ D P P+
Sbjct: 2 KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
I G +A+GVVE+VG V+ +VGD V
Sbjct: 62 ILGWDASGVVEAVGSEVTLFKVGDEV 87
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336 |
| >gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLP 94
TP P + G+E G V VG GV L+ GD V+P
Sbjct: 60 TPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIP 93
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341 |
| >gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 78/374 (20%), Positives = 131/374 (35%), Gaps = 89/374 (23%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-QTPLFPRIFGHEAAGVVESVGE 81
L + + ++ P A EV +K++ + + D+ P P G++ G V+++G
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGS 74
Query: 82 GVSDLEVGDHV--LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGE 139
GV+ EVGD V L G G+ + D L+ + P GV A+ +N
Sbjct: 75 GVTGFEVGDRVAALTR-VG--GNAEYINLDA---KYLVPV-P-EGVDAAEAVC-LVLNY- 124
Query: 140 PVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSV 199
+ Y ++H AK+ +V I G S G+G L
Sbjct: 125 ----------VTAYQMLH--RAAKV---LTGQRVLIH--GASGGVGQAL----------- 156
Query: 200 AVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259
+ LA GA + G + S + ++ G T ++ P A
Sbjct: 157 -------LELALLAGAEVYGTA-------SERNHAALRELGATPIDYRTKDWLP-----A 197
Query: 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNER--- 316
+T GGVD + G ++ ++ + G G V G S + +
Sbjct: 198 MLTPGGVDVVFDGVG-GESYEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARL 255
Query: 317 -TLKGTFFGN---------------YKPRTDLPSVVDMYMNKQLELEKF---ITHRIPFS 357
LK G R DL ++D+ L K I R+P S
Sbjct: 256 AKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDL-----LAKGKIRPKIAKRLPLS 310
Query: 358 EINKAFEYMVKGEG 371
E+ +A + G+
Sbjct: 311 EVAEAHRLLESGKV 324
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331 |
| >gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 65/270 (24%), Positives = 91/270 (33%), Gaps = 57/270 (21%)
Query: 26 QDVEVAPPQAMEVRIKIKYTSLCRTDLYF---WESK----------------GQTPL-FP 65
DV V P EV I++ + TD+ W S L FP
Sbjct: 19 DDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFP 78
Query: 66 RIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
RI G + G V +VGEGV +G+ VL V R D D +
Sbjct: 79 RIQGADIVGRVVAVGEGVDTARIGERVL-VDPSI----RDPPEDDPADIDYI-------- 125
Query: 126 MLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
G R +G F+EYTVV + +N ++ C ST
Sbjct: 126 ----GSER---DG----------GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAEN 168
Query: 186 ATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
L A G +V V G G VG A + A+ GA +I V ++K E + G
Sbjct: 169 -MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAAKE-EAVRALGADTV 225
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274
+ + + VD + G
Sbjct: 226 ILRDAPLLADAKALGG---EPVDVVADVVG 252
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350 |
| >gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 1e-05
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 40 IKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTG 98
I+++ L D+ + G P + G E AGVV VG GV+ L VGD V+ + G
Sbjct: 1 IEVRAAGLNFRDVLI--ALGLYP-GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAPG 56
|
Enoylreductase in Polyketide synthases. Length = 287 |
| >gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQ--AMEVRIKIKYTSLCRTDLYFWESKGQTPLFP---R 66
KA E G P ++ VEV P A EV I++ + R DL + G+ P P
Sbjct: 2 KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLL--QRAGKYPPPPGASD 59
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
I G E AG V +VGEGVS +VGD V
Sbjct: 60 ILGLEVAGEVVAVGEGVSRWKVGDRV 85
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325 |
| >gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
I G +A+G+V +VGEGV + +VGD V+ HC N + +P M
Sbjct: 84 IGGSDASGIVWAVGEGVKNWKVGDEVVV----------HCSVWDGNDPERAGGDP----M 129
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG-CVAKINPLAPLDKVCILSCGVSTGLG 185
Q I G N+ +F+++ +V + + K L+ + +G
Sbjct: 130 FDPSQ---RIWGYETNY----GSFAQFALVQATQLMPKPKHLSWEEAAAY------MLVG 176
Query: 186 ATL---------NVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
AT N KP G +V ++G G +G A + AR AGA + V S ++ E
Sbjct: 177 ATAYRMLFGWNPNTVKP--GDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEY 233
Query: 236 AKKFGVTDFVNTSEHD 251
+ G +N + D
Sbjct: 234 CRALGAEGVINRRDFD 249
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393 |
| >gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 29 EVAPPQAM---EVRIKIKYTSLCRTD---------------LYFWESKGQTPLFPRIFGH 70
P +V IK+ S+ D K FP G
Sbjct: 20 NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR 79
Query: 71 EAAGVVESVGEGVSDLEVGDHV 92
+ +GVV +G GV E+GD V
Sbjct: 80 DCSGVVVDIGSGVKSFEIGDEV 101
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350 |
| >gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 21 KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPRIFGHEAAGVVE 77
K L + + EV P EV IK++ + +DL F KGQ P G E +G V
Sbjct: 16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF--LKGQYGSTKALPVPPGFEGSGTVV 73
Query: 78 SVGEG-VSDLEVGDHV 92
+ G G ++ +G V
Sbjct: 74 AAGGGPLAQSLIGKRV 89
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 100.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 100.0 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 100.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 100.0 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 100.0 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 100.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 100.0 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 100.0 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 100.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 100.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 100.0 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 100.0 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 100.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 100.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 100.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 100.0 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 100.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 100.0 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 100.0 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 100.0 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 100.0 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 100.0 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 100.0 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 100.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 100.0 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 100.0 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 100.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 100.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 100.0 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 100.0 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 100.0 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 100.0 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 100.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 100.0 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 100.0 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 100.0 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 100.0 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 100.0 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 100.0 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 100.0 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 100.0 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 100.0 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 100.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 100.0 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 100.0 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 100.0 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 100.0 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 100.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 100.0 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 100.0 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 100.0 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 100.0 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 100.0 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 100.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 100.0 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 100.0 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 100.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 100.0 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 100.0 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 100.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 100.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 100.0 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 100.0 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 100.0 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 100.0 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 100.0 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 100.0 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 100.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 100.0 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 100.0 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 100.0 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 100.0 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 100.0 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 100.0 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 100.0 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 100.0 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 100.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 100.0 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 100.0 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 100.0 | |
| cd08288 | 324 | MDR_yhdh Yhdh putative quinone oxidoreductases. Yh | 100.0 | |
| cd08247 | 352 | AST1_like AST1 is a cytoplasmic protein associated | 100.0 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 100.0 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 100.0 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 100.0 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 100.0 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 100.0 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 100.0 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 100.0 | |
| cd08275 | 337 | MDR3 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 100.0 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 100.0 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 99.98 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 99.97 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 99.97 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 99.96 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 99.96 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.95 | |
| PF08240 | 109 | ADH_N: Alcohol dehydrogenase GroES-like domain; In | 99.89 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 99.74 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 99.38 | |
| PF13602 | 127 | ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ | 99.24 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.61 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.49 | |
| PF11017 | 314 | DUF2855: Protein of unknown function (DUF2855); In | 98.47 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.38 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.29 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.17 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.12 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.07 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.06 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.05 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.85 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.85 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.84 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.81 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.75 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.55 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 97.55 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.5 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.44 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.28 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.27 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.23 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.21 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.18 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.15 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 97.14 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.13 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.01 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.96 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 96.94 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 96.94 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.92 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.92 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 96.83 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 96.78 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.76 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 96.69 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.68 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.64 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.64 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 96.63 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 96.62 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.61 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 96.6 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.6 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.58 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.56 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.55 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 96.55 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 96.5 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.47 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.46 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.46 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.46 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 96.43 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.42 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.42 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 96.38 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.34 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.33 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.3 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 96.3 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.3 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 96.29 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.28 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.25 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.23 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.22 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 96.21 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.2 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.18 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.17 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.16 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 96.14 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 96.13 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.13 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 96.13 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.12 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.12 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 96.11 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.08 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.07 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.06 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.05 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 96.03 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.02 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.01 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 96.01 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 96.01 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.0 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.99 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 95.99 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.96 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.94 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 95.87 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.87 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.84 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.83 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 95.83 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.81 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.81 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.81 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 95.78 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.77 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 95.73 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.73 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.72 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 95.72 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 95.71 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 95.7 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.68 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 95.68 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.67 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 95.66 | |
| PLN02366 | 308 | spermidine synthase | 95.66 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.66 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 95.66 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 95.65 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 95.64 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 95.64 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.63 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.61 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 95.6 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 95.59 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 95.57 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.55 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.54 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.54 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 95.54 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.53 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.53 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 95.47 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 95.46 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.46 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.45 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 95.45 | |
| PLN02476 | 278 | O-methyltransferase | 95.44 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 95.42 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.41 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.4 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 95.38 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 95.38 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.37 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.36 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.36 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.36 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 95.34 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.32 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.3 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 95.29 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.27 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.26 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.25 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.24 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 95.24 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 95.24 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 95.23 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.23 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 95.22 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.22 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.21 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.2 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.2 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 95.2 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 95.19 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 95.19 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 95.17 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 95.17 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 95.17 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.15 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.14 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.12 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.12 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 95.12 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 95.11 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.1 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.09 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 95.08 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 95.08 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 95.06 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.06 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.06 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.06 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 95.05 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.04 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 95.03 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.02 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 95.02 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 95.02 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.02 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 95.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 94.99 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 94.98 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.97 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.97 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 94.97 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 94.95 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 94.95 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.95 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.95 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.95 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 94.94 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.94 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 94.92 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 94.92 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 94.91 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 94.88 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.87 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.86 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 94.86 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 94.83 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.82 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 94.81 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.8 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 94.8 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.78 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.78 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.76 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.73 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 94.72 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 94.71 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 94.71 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 94.7 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 94.7 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.69 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 94.68 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.66 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.64 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.64 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.64 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 94.6 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.58 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 94.58 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.58 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.57 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.56 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.55 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.55 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 94.54 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.53 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 94.53 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.51 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.51 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 94.49 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.48 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.45 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.45 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.44 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.43 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.41 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.4 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.39 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 94.37 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 94.35 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.33 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.33 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 94.31 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.3 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 94.28 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.25 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 94.22 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 94.22 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.21 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 94.2 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 94.2 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 94.17 | |
| PLN02823 | 336 | spermine synthase | 94.16 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.15 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 94.1 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 94.04 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 93.99 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 93.97 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 93.97 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.92 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 93.89 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 93.87 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 93.87 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.87 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 93.85 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.85 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 93.83 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 93.82 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 93.82 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 93.8 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.77 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.76 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 93.75 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.7 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 93.69 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.68 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 93.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 93.59 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.57 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 93.55 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 93.54 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 93.54 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 93.53 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 93.51 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 93.5 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.5 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 93.49 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 93.48 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.48 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.48 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.47 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.45 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.45 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 93.44 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 93.43 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 93.42 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.42 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 93.42 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.41 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.41 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.4 | |
| PLN03013 | 429 | cysteine synthase | 93.4 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 93.4 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 93.39 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 93.37 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 93.35 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 93.34 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.34 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.33 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 93.3 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 93.18 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 93.18 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.17 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 93.15 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 93.14 | |
| PLN02256 | 304 | arogenate dehydrogenase | 93.14 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 93.12 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 93.06 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 93.05 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.05 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.04 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 93.01 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 92.99 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 92.96 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 92.95 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 92.86 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 92.86 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 92.84 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.82 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 92.82 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 92.82 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 92.8 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 92.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.79 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 92.75 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 92.73 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 92.72 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.71 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.7 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.69 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 92.65 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 92.64 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 92.64 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.6 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.6 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 92.6 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 92.58 |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=461.81 Aligned_cols=366 Identities=48% Similarity=0.864 Sum_probs=347.2
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|++||.+.+++++||+++++++++|++||||||+.++|+|++|...++|..+.. +|.++|||++|+|++||++|+++++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 467999999999999999999999999999999999999999999999988877 9999999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|+..+..+||.|.+|++|.+++|...+...-.| ..++|..+++.+|...+++.|.++|++|.++++..+++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG-~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKG-TMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccc-cccCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 999999999999999999999999999887665556 3489999999999999999999999999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+++.++.+.|...|.+.+....+++++|+++.|+|.|++|++++|-|+..|+++||+++.+++|++++++||+++++|..
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~ 238 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+ +..+.+.+++++++|++|||+|+.+.+.+++++..+ ||+.+++|........++++..+....+++|+.++....
T Consensus 239 ~~~-~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p 316 (366)
T COG1062 239 EVD-DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARP 316 (366)
T ss_pred hhh-hHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCceeecChHHeeccceEEEEeecCCcc
Confidence 763 488999999999999999999999999999999999 599999999887778888888888779999999999999
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
+.++.++++++++|++++++++++.++|+|+++||+.+.+++..|-||.+
T Consensus 317 ~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 317 RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 99999999999999999999999999999999999999999999988864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=464.96 Aligned_cols=335 Identities=35% Similarity=0.549 Sum_probs=301.7
Q ss_pred hhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
+++|||+++.++++|+++++++.|.|+++||+|+|+|+|+|++|++.++|.++...+|++||||++|+|+++|++|++|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCEEEe-cCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 88 VGDHVLP-VFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 88 ~GdrV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
+||||.+ ++..+|++|+||++|++++|++.... |+. -+|+||||+++++.+++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~---gy~-------------------~~GGyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT---GYT-------------------TDGGYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCcccc---cee-------------------ecCcceeEEEEchHHeEECCC
Confidence 9999988 99999999999999999999997776 544 135999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++||.+.|+..|+|++| +..+++||++|+|+|.|++|++|+|+||++|+ +|++++++++|+++++++|++++++
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~ 216 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVIN 216 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEE
Confidence 999999999999999999996 55999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~ 325 (380)
..+.+ +.+.+++. +|+++|+++ +..++.+++.|+++ |+++++|..........+.. .++++++|.|+..++
T Consensus 217 ~~~~~--~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~ 288 (339)
T COG1064 217 SSDSD--ALEAVKEI----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT 288 (339)
T ss_pred cCCch--hhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC
Confidence 77433 66666553 999999999 79999999999997 99999999852222334333 345999999998765
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
+.++++++++..++++.+. +.+.++++|+++|++.|.+++. +|.||++.
T Consensus 289 ---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 289 ---RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred ---HHHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 5689999999999988765 4479999999999999999988 69999874
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=441.89 Aligned_cols=374 Identities=56% Similarity=1.017 Sum_probs=357.5
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
...+.++||.+.+++++||.++++.+++|+..||+||+.++++|++|...|.|..+...+|.++|||++|+|+.+|.+|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 34577899999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
.|++||+|+..+...|+.|.+|+++..|+|...+.....+....||.+++..+|+.++++.+.-+|+||.+++...+.++
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI 161 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI 161 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence 99999999999999999999999999999999998877788888999999999999999999999999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
++..+++.++.|.|..+|+|.|.+..+.+++|+++.|+|-|++|+++++-||+.|+.++|+++.+++|.+.++++|++++
T Consensus 162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~ 241 (375)
T KOG0022|consen 162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF 241 (375)
T ss_pred CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeec
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFG 324 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 324 (380)
+|+.+......+.+.+.|++++|+.|||+|+.+++.+++.+...+||.-+++|.......+...+..+.+++++.|+.++
T Consensus 242 iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FG 321 (375)
T KOG0022|consen 242 INPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFG 321 (375)
T ss_pred cChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecc
Confidence 99985444588899999999999999999999999999999999999999999988788888888888899999999999
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.++.+.++..+++.+.++++.++++++|.+||+++++||+.|.+++..|.|+.+
T Consensus 322 G~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~ 375 (375)
T KOG0022|consen 322 GFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM 375 (375)
T ss_pred cccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence 999999999999999999999999999999999999999999999999998864
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=408.76 Aligned_cols=343 Identities=27% Similarity=0.452 Sum_probs=300.3
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCC---CCCCccccccccEEEEEeCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQT---PLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~---~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
.+|+|+++...+. ++++++++|++ .|+||+|++.++|||.+|++++...+.. .+.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 3589999988887 99999999987 8999999999999999999999875433 34899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
++++||||++.|..+|+.|++|++|+||.|+...+. +.... +|++++|++.++++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~------------------~G~la~y~~~~~dfc~KL 140 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPV------------------DGTLAEYYVHPADFCYKL 140 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCc------------------CCceEEEEEechHheeeC
Confidence 999999999999999999999999999999999887 33322 259999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
||++|++++|.+. +++++|+| .+++.+++|+++||+|+|++|+++...||++|+.+|+.++..+.|+++++++|++.+
T Consensus 141 Pd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 141 PDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT 218 (354)
T ss_pred CCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence 9999999998877 79999999 688999999999999999999999999999999999999999999999999999988
Q ss_pred ecCCCCC--ccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 245 VNTSEHD--RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 245 i~~~~~~--~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
.+....+ ..+.+.++...+. .+|+.|||+|....++.++.+++.+ |+++++|+.....+++.... ..+++.+.|+
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~~~~~fpi~~v-~~kE~~~~g~ 296 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGAEEIQFPIIDV-ALKEVDLRGS 296 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCCCccccChhhh-hhheeeeeee
Confidence 7665543 3455556665554 6999999999988999999999997 99999998754444443222 3499999998
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEEecCC
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCIISMED 380 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~~~ 380 (380)
+-+. ..++..+++++++|++++++++++.|+++++.+||+.++.+.. .|+++...+
T Consensus 297 fry~---~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 297 FRYC---NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred eeec---cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 7432 2479999999999999999999999999999999999998875 599998753
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=406.41 Aligned_cols=349 Identities=28% Similarity=0.462 Sum_probs=300.3
Q ss_pred CCCccchhhhhhhhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEE
Q 016933 1 MSSTAGLILTCKAAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~ 78 (380)
|++ ++.|.++++|.++++++ ++++.+++.|+|+++||+|+++|||||++|++.+.|.++...+|.|+|||++|+|++
T Consensus 1 ~~~-~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvk 79 (360)
T KOG0023|consen 1 MSS-MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVK 79 (360)
T ss_pred CCc-ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEE
Confidence 444 66799999999999999 577799999999999999999999999999999999998899999999999999999
Q ss_pred eCCCCCCCCCCCEE-EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEe
Q 016933 79 VGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH 157 (380)
Q Consensus 79 vG~~v~~~~~GdrV-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~ 157 (380)
+|++|++|++|||| +.....+|+.|++|..+++++|+...+. +.|+. .|| ...+|+||+|++++
T Consensus 80 vGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~-~DG-------------t~~~ggf~~~~~v~ 144 (360)
T KOG0023|consen 80 VGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVY-HDG-------------TITQGGFQEYAVVD 144 (360)
T ss_pred ECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccc-cCC-------------CCccCccceeEEEe
Confidence 99999999999999 5677889999999999999999964332 22332 333 23357899999999
Q ss_pred ccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHH
Q 016933 158 SGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-KRFEEA 236 (380)
Q Consensus 158 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~ 236 (380)
+.+++++|++++.+.||.+.|+..|+|.+| ...++.||+++.|.|+|++|.+++|+||++|. +|++++++. +|.+.+
T Consensus 145 ~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 145 EVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAI 222 (360)
T ss_pred eeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHH
Confidence 999999999999999999999999999995 67888899999999997799999999999999 999999987 778888
Q ss_pred HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccc
Q 016933 237 KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNE 315 (380)
Q Consensus 237 ~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~ 315 (380)
+.||++..++..++ .++.+++...+++++|-+.+. ....++.++.+++.+ |++|++|.+.. .+.+...++ .+.
T Consensus 223 ~~LGAd~fv~~~~d-~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~--~~~~~~~~lil~~ 296 (360)
T KOG0023|consen 223 KSLGADVFVDSTED-PDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK--PLKLDTFPLILGR 296 (360)
T ss_pred HhcCcceeEEecCC-HHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC--cccccchhhhccc
Confidence 88999998887632 237888888777776766665 446789999999997 99999999874 444444433 488
Q ss_pred cEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 316 RTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 316 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
++|.||..++ +.+.++++++...+.+... .+..+++++++||+.|++++. .|.||+++
T Consensus 297 ~~I~GS~vG~---~ket~E~Ldf~a~~~ik~~---IE~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 297 KSIKGSIVGS---RKETQEALDFVARGLIKSP---IELVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred EEEEeecccc---HHHHHHHHHHHHcCCCcCc---eEEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 9999999876 4689999999999987665 578899999999999999998 69999875
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=423.58 Aligned_cols=377 Identities=53% Similarity=1.021 Sum_probs=310.0
Q ss_pred CCccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeC
Q 016933 2 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG 80 (380)
|.|.+.+++|||+++.++++++++++++.|+|+++||+|||+++|||++|+..+.|... ...+|.++|||++|+|+++|
T Consensus 2 ~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG 81 (381)
T PLN02740 2 SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVG 81 (381)
T ss_pred ccccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeC
Confidence 34455778999999999887799999999999999999999999999999999888653 23578999999999999999
Q ss_pred CCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccC--CCccccccCCcceeeEEEEec
Q 016933 81 EGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSIN--GEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 81 ~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~--g~~~~~~~~~G~~a~~~~v~~ 158 (380)
+++++|++||||++.+..+|+.|.+|++++++.|.+....+..+....+|..++... +....+....|+|+||+.++.
T Consensus 82 ~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~ 161 (381)
T PLN02740 82 EGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDS 161 (381)
T ss_pred CCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEeh
Confidence 999999999999999999999999999999999998664311100000110000000 000011122479999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+.++++|+++++++++.+++++.|||+++.+.+.+++|++|||+|+|++|++++|+||.+|+.+|++++++++|++++++
T Consensus 162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 99999999999999999999999999987778899999999999999999999999999999679999999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEE
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTL 318 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 318 (380)
+|++.++++++.+..+.+.+++++++++|++||++|.+..+..+++++++++|+++++|.......+.+....+.+++++
T Consensus 242 ~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i 321 (381)
T PLN02740 242 MGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSI 321 (381)
T ss_pred cCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeE
Confidence 99999998776433477778887766899999999987889999999988339999999875333344444334478899
Q ss_pred EeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.|+..+.+....++.++++++.++++++.++++++|+|+|+++|++.+.+++..|++|++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 322 TGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred EEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 998766554445689999999999998888899999999999999999988878999874
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=417.10 Aligned_cols=368 Identities=78% Similarity=1.307 Sum_probs=308.5
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
++|||+++.+++++++++++++|+|+++||+||+.+++||++|+..+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 47999999988888999999999999999999999999999999999887665677999999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||||++.+..+|+.|.+|+++.+++|.+.......|....++...+...|...+++...|+|+||+.++.+.++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 99999999999999999999999999986443222322111111122222222222234789999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.+++.+.|||.++.+...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|.++++++|++.++++.
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~ 240 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEccc
Confidence 99999999999999999887888999999999999999999999999999987799999999999999999999999876
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+..+.+.+++++++++|++||++|....+..+++++++++|+++++|.......+.+....+.+++++.|+..+.+..
T Consensus 241 ~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 320 (369)
T cd08301 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKP 320 (369)
T ss_pred ccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCCh
Confidence 53334777788877778999999999877889999999992299999998753333444443345789999987766555
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEE
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 376 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi 376 (380)
+.+++++++++.++++++.+++++.|+|+|+++||+.+++++..|+++
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~ 368 (369)
T cd08301 321 KTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCIL 368 (369)
T ss_pred HHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEe
Confidence 567899999999999888878899999999999999999998889887
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=415.31 Aligned_cols=367 Identities=49% Similarity=0.923 Sum_probs=301.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++...++++++++++.|+|+++||+|||.++|+|++|+..+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 78999888888899999999999999999999999999999999888765556799999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
||++.+..+||.|.+|+.|.+++|.+.......|+. .+|..++..+|....+..+.|+|+||+.+|.+.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999999999999999999999999874322111221 1221122122211122223579999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+++++.|||+++.+.+.+++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|++.++++++.
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~ 240 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY 240 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccccc
Confidence 99999999999999998778899999999999999999999999999999779999999999999999999999987753
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRT 330 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 330 (380)
+..+.+.+++++++++|++||++|++..+..+++++++++|+++.+|.......+......+.++..+.++..+......
T Consensus 241 ~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 320 (368)
T TIGR02818 241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRT 320 (368)
T ss_pred chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccceEEEeeccCCCcHH
Confidence 33467778887777899999999987888999999988339999999764222233333333344456776544333345
Q ss_pred ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 331 DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
++.++++++.++++++.+++++.|+|+|+++|++.+.+++..|++|++
T Consensus 321 ~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 321 ELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred HHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 689999999999998888899999999999999999888778999875
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=413.88 Aligned_cols=361 Identities=40% Similarity=0.719 Sum_probs=300.9
Q ss_pred hhhhhhccCCC--------CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 11 CKAAVAWEAGK--------PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 11 ~~a~~~~~~~~--------~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
|||+++.++|. .+++++++.|+|+++||+|||.+++||++|+.++.|..+ ..+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence 78999988763 389999999999999999999999999999999888653 356899999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||++.+...|+.|.+|++|++++|.+.......|.. .+|...+..++..+.+..+.|+|+||+.++.+.++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence 99999999999988889999999999999999876543222221 11211112222111122234799999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
++|+++++++|+.+++++.|||.++.+.+.+++|++|||+|+|++|++++|+||.+|+++|++++++++|+++++++|++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999999999999987888999999999999999999999999999996799999999999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEee
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGT 321 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 321 (380)
+++++.+.+ +.+.+++++++++|++||++|.+..+..++++++++ |+++.+|...+.....++... +.+++++.|+
T Consensus 239 ~~i~~~~~~--~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~ 315 (371)
T cd08281 239 ATVNAGDPN--AVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKGS 315 (371)
T ss_pred eEeCCCchh--HHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEEE
Confidence 999887654 778888887778999999999878899999999997 999999986533334444433 3489999998
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEE
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 376 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi 376 (380)
+.+.+...+++.+++++++++++++.+++++.|+|+|+++||+.+.+++..|.||
T Consensus 316 ~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi 370 (371)
T cd08281 316 YMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI 370 (371)
T ss_pred ecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 7665444457899999999999988888999999999999999999988864443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=413.07 Aligned_cols=367 Identities=56% Similarity=0.988 Sum_probs=304.2
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
+|||+++...++++++++++.|.|+++||+|||+++|+|++|+.++.|..+...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG 81 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG 81 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence 68999988888889999999999999999999999999999999988876555689999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||++.+..+|++|.+|++++++.|.+.......|.. .+|..++..+|....++.+.|+|+||+.++.+.++++|++++
T Consensus 82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~ 160 (368)
T cd08300 82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP 160 (368)
T ss_pred CEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence 9999999999999999999999999875422111221 111111222222222233457999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++++.+++++.|||+++.+.+.+++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++++++
T Consensus 161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~ 240 (368)
T cd08300 161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD 240 (368)
T ss_pred hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence 99999999999999998777888999999999999999999999999999977999999999999999999999998876
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPR 329 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 329 (380)
.+..+.+.+++++++++|++||++|++..+..+++++++++|+++.+|.......+......+.+...+.++..+.+...
T Consensus 241 ~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (368)
T cd08300 241 HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAFGGWKSR 320 (368)
T ss_pred cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhhcCeEEEEEecccCcH
Confidence 53347788888877789999999998778999999998734999999976422223333333334456777766555555
Q ss_pred CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 330 TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
+++.+++++++++++++.++++++|+|+|+++||+.+.+++..|++|+
T Consensus 321 ~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 321 SQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred HHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 678999999999999888889999999999999999998887899875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-55 Score=412.18 Aligned_cols=371 Identities=56% Similarity=1.019 Sum_probs=302.8
Q ss_pred cchhh--hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 5 AGLIL--TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 5 ~~~~~--~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
.+.|. .|||+++.++++.++++++++|+|+++||+|||.++|+|++|+..+.+.. .+|.++|||++|+|+++|++
T Consensus 5 ~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~ 81 (378)
T PLN02827 5 ISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEG 81 (378)
T ss_pred ccCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCC
Confidence 34454 59999998877679999999999999999999999999999999887632 46889999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||++.+..+|+.|.+|+++++++|.+.... ..|....+....+..+|..+.++...|+|+||+.++.+.++
T Consensus 82 v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~ 160 (378)
T PLN02827 82 VTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV 160 (378)
T ss_pred CcccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheE
Confidence 99999999999999999999999999999999864321 00111001111111112111111224799999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
++|+++++++++.+++++.++|.++++.+++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|.++++++|++
T Consensus 161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~ 240 (378)
T PLN02827 161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT 240 (378)
T ss_pred ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence 99999999999999988899998777778899999999999999999999999999996788888899999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeee
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTF 322 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 322 (380)
+++++++.+..+.+.+++++++++|++||++|.+..+..+++.+++++|+++.+|.......+......+.+++++.|+.
T Consensus 241 ~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~ 320 (378)
T PLN02827 241 DFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSL 320 (378)
T ss_pred EEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeee
Confidence 99988764334777788877768999999999877889999999993399999998653222222122345899999987
Q ss_pred ecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
.+.+....++.+++++++++++++.+++++.|+|+++.+|++.+++++..|+||.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~ 377 (378)
T PLN02827 321 FGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMP 377 (378)
T ss_pred cCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEec
Confidence 765544557899999999999988778999999999999999999988889999875
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=403.72 Aligned_cols=356 Identities=37% Similarity=0.630 Sum_probs=299.5
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
||||+++.+++++++++++++|+|+++||+|||.++++|++|+.++.|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence 699999999998899999999999999999999999999999999887543 3478999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||++.+..+|+.|.+|++|.+++|...... ..+....+ |.......+.|+|+||+.++...++++|++++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~-~~~~~~~~--------g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~ 150 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNA-TQKMTLTD--------GTELSPALGIGAFAEKTLVHAGQCTKVDPAAD 150 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCcccc-cccccccc--------CcccccccccccccceEEEehhheEECCCCCC
Confidence 9999999999999999999999999753211 00000000 10000011247999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++++.+++.+.++|.++.+.+.+++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++++++
T Consensus 151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~ 230 (358)
T TIGR03451 151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG 230 (358)
T ss_pred hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC
Confidence 99999999999999988777888999999999999999999999999999966999999999999999999999998876
Q ss_pred CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCC
Q 016933 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYK 327 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~ 327 (380)
.+ +.+.+++.+++ ++|++||++|++..+..++++++++ |+++.+|.........++.. .+.+++++.+++.+...
T Consensus 231 ~~--~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 307 (358)
T TIGR03451 231 TD--PVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCL 307 (358)
T ss_pred cC--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCC
Confidence 55 77888888876 8999999999877899999999997 99999998653333344432 33478899888654333
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
..+++++++++++++++++.++++++|+++|+++|++.+++++..|++|.+
T Consensus 308 ~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~~ 358 (358)
T TIGR03451 308 PERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVEL 358 (358)
T ss_pred cHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEeC
Confidence 345788999999999998888899999999999999999988878888764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=399.07 Aligned_cols=365 Identities=58% Similarity=1.010 Sum_probs=303.3
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
++|||+++.+.++++++++++.|.|+++||+||++++++|++|+..+.|..+ ..+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 4689999988887899999999999999999999999999999999887554 457899999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||||++.+..+|++|.+|++|.+++|++....+. |.. .++..++...|.....+.+.|+|+||+.++.+.++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRANES-GLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccccc-ccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 9999999999999999999999999998654311 221 11211222222222222235799999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.+++++.|||+++.+.+.+++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|++.++++|++++++..
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~ 237 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence 99999999999999999877788899999999999999999999999999997799999999999999999999999877
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+..+.+.+++++++++|++||++|....+..+++++++++|+++.+|...+ ....+....+..++++.|++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~ 316 (365)
T cd08277 238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG-AELSIRPFQLILGRTWKGSFFGGFKS 316 (365)
T ss_pred cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc-cccccCHhHHhhCCEEEeeecCCCCh
Confidence 64433667777777778999999999877889999999873399999998642 22233333344578899887766544
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
..++.+++++++++++++.+++++.|+|+|+++||+.+.+++..|+++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 317 RSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred HHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 5578999999999998888889999999999999999988877798874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=388.63 Aligned_cols=337 Identities=29% Similarity=0.471 Sum_probs=288.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.+++. ++++++++|+|+++||+||+.++++|++|+..+.+... ...+|.++|||++|+|+++|++++.|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 78999887654 99999999999999999999999999999998776533 23458999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||++.+..+|+.|++|++|+++.|.+... .+|.. ..|+|+||+.++...++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-------------------~~G~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-------------------RDGGHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-------------------CCCcceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999986543 11211 236999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++|+.+++++.|||+++ ..+.+++|++|||+|+|++|++++|+||.+|+++|++++++++|.++++++|++.++++++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~ 217 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ 217 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc
Confidence 999999999999999996 5678899999999999999999999999999955999999999999999999999998865
Q ss_pred CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
.+ .+.+.+.+++ ++|++||++|+...+..++++++++ |+++.+|.... ..+......+.+++++.|++...
T Consensus 218 ~~---~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~--- 289 (339)
T cd08239 218 DD---VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFS--- 289 (339)
T ss_pred ch---HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCC---
Confidence 43 4556666666 8999999999977778899999997 99999997642 22222122344889999987533
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.++++++++++.++++.+.+++++.|+++++++||+.++++..+|+||++
T Consensus 290 ~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 290 VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 34689999999999998888899999999999999999887768999875
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=383.90 Aligned_cols=336 Identities=21% Similarity=0.330 Sum_probs=276.7
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhc-cCCC--CCCCCccccccccEEEEEeCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-SKGQ--TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~-g~~~--~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
..+||++++.+++ +++++++.| ++++||||||.++|||++|+.++. |... ...+|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 3578999987776 999999997 689999999999999999999875 3322 2357999999999999999 6789
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++.+..+|+.|++|+++.+++|++..+. |....+ ....|+|+||++++++.++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~---g~~~~~--------------~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFF---GSAMYF--------------PHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCccee---eccccc--------------CCCCCceeeeEEechHHeEECC
Confidence 99999999999999999999999999999876543 321000 0013699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++++++ +..++++||+++. .....+|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus 142 ~~l~~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 142 EKADEKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCHHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence 999987655 4557889999864 45666899999999999999999999999997799999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 246 NTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
++++.+ +.+.. .. .+++|++||++|.+..+..++++++++ |+++.+|....... ++... +.+++++.|+...
T Consensus 220 ~~~~~~--~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~--~~~~~~~~k~~~i~g~~~~ 292 (343)
T PRK09880 220 NPQNDD--LDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGGAPPE--FPMMTLIVKEISLKGSFRF 292 (343)
T ss_pred cCCccc--HHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCCc--cCHHHHHhCCcEEEEEeec
Confidence 887654 43322 21 236999999999877889999999997 99999997543222 22222 3588999988642
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+++++++++++++++++.++++++|+++|+++||+.+.+++. +|++|.+
T Consensus 293 ----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 293 ----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred ----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 3579999999999999887889999999999999999988776 7999864
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=379.97 Aligned_cols=343 Identities=30% Similarity=0.442 Sum_probs=281.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCc-cccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPR-IFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~-v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|++++++.++...++++.+.|.+.++||+|||.++|||++|++.+.+..+....|. ++|||++|+|+++| .++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 56666666665355777777778999999999999999999999999777666666 99999999999999 77889999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe-CCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK-INPLA 168 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~-~p~~~ 168 (380)
|||++.+..+|+.|.+|++|.++.|.+.++. |+...... -.|+|+||+.+|.+++++ +||++
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~---g~~~~~~~--------------~~G~~aEyv~vp~~~~~~~~pd~~ 142 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFY---GYAGLGGG--------------IDGGFAEYVRVPADFNLAKLPDGI 142 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCcccc---ccccccCC--------------CCCceEEEEEeccccCeecCCCCC
Confidence 9999999999999999999999999966544 33211000 136999999999755555 58888
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~ 247 (380)
+.+++++..++++++++.......+++++++|+|+|++|++++++|+.+|+.+|++++.+++|++++++ .|++.+++.
T Consensus 143 -~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 143 -DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred -ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC
Confidence 677777777999997774445555666699999999999999999999999999999999999999999 667766665
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEeeeecC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~ 325 (380)
.+.+ ....+.+.+++ ++|++|||+|.+..+.++++.++++ |+++++|....... .+.. ..+.+++++.|++.
T Consensus 222 ~~~~--~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~-- 295 (350)
T COG1063 222 SEDD--AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLR-- 295 (350)
T ss_pred cccc--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccC--
Confidence 5543 67778888888 9999999999988999999999997 99999999865443 2222 23559999999842
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEEec
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCIISM 378 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~ 378 (380)
.....+++.+++++.+|++++.+++++.++++++++|++.+.++.. .|+++.+
T Consensus 296 ~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 296 PSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred CCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1234579999999999999999999999999999999999987654 5998864
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=385.70 Aligned_cols=346 Identities=22% Similarity=0.305 Sum_probs=273.2
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCC-------CCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQ-------AMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
-|||+++..+++ +++++++.|+|+ +|||||||+++|||++|++++.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence 389999988776 999999999874 68999999999999999999887543 356899999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCC---CCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP---VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
|++|++||||++.+..+|+.|.+|++|++++|.+..... .+|+... | .-.|+|+||+.+|..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------~------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM---------G------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc---------C------CCCCceEEEEEechh
Confidence 999999999999999999999999999999999743210 0121100 0 013699999999964
Q ss_pred --ceEeCCCCCCc----cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 160 --CVAKINPLAPL----DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 160 --~~~~~p~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
.++++|++++. +.++.+.++++++|+++ ...++++|++|||.|+|++|++++|+|+.+|++.|++++++++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999998753 35677788899999985 467899999999998999999999999999996677777888999
Q ss_pred HHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccCh--------------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNI--------------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 234 ~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
++++++|++.++..++.+ +.+.+.+++++ ++|++||++|.+ ..+.++++.++++ |+++++|.
T Consensus 224 ~~a~~~Ga~~v~~~~~~~--~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~ 300 (393)
T TIGR02819 224 AQARSFGCETVDLSKDAT--LPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGL 300 (393)
T ss_pred HHHHHcCCeEEecCCccc--HHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeee
Confidence 999999997543323333 66778777776 899999999985 3799999999997 99999998
Q ss_pred CCCCceeec-----------ccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCcee-eeeccccHHHHHHH
Q 016933 299 PSKDAVFMT-----------KPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFIT-HRIPFSEINKAFEY 365 (380)
Q Consensus 299 ~~~~~~~~~-----------~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~a~~~ 365 (380)
......... ... .+.+++++.+.. ....+.+.++++++.++++++.++++ +.|+|+|+++||+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~ 377 (393)
T TIGR02819 301 YVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAE 377 (393)
T ss_pred cCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHH
Confidence 631111111 111 112455555532 11123347899999999998877777 78999999999999
Q ss_pred HHcCCceeEEEecC
Q 016933 366 MVKGEGLRCIISME 379 (380)
Q Consensus 366 l~~~~~~Kvvi~~~ 379 (380)
+.++...|++|.+.
T Consensus 378 ~~~~~~~Kvvi~~~ 391 (393)
T TIGR02819 378 FDAGAAKKFVIDPH 391 (393)
T ss_pred HhhCCceEEEEeCC
Confidence 98887789999864
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=374.42 Aligned_cols=315 Identities=28% Similarity=0.391 Sum_probs=264.1
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccC-CCCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~-~~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+.+.| +++++++.|.|++|||||||.++|||+.|...++|. .+...+|+++|.|++|+|+++|++|+.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 688888887776 888999999999999999999999999999999986 33456899999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||+... .. + ..|+|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~-~~------------------------~---------------------~~G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALG-GV------------------------G---------------------RDGGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEcc-CC------------------------C---------------------CCCcceeEEEecHHHceeCCCC
Confidence 999999652 00 0 1369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++||++++++.|||++|.+..++++|++|||+|+ |++|.+++|+||++|+ .++++.+++++.++++++|++++++
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN 193 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEc
Confidence 9999999999999999999988899999999999986 9999999999999998 6666667778888999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~ 324 (380)
|.+.+ |.+.+++++++ ++|+|||++|+ +.+..++++++++ |+++.+|...+.....++...+. +.++..+....
T Consensus 194 y~~~~--~~~~v~~~t~g~gvDvv~D~vG~-~~~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 269 (326)
T COG0604 194 YREED--FVEQVRELTGGKGVDVVLDTVGG-DTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG 269 (326)
T ss_pred CCccc--HHHHHHHHcCCCCceEEEECCCH-HHHHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecce
Confidence 98887 99999999998 89999999999 7888999999997 99999999874222223333233 66777776654
Q ss_pred CC---CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcC-Cc-eeEEEec
Q 016933 325 NY---KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG-EG-LRCIISM 378 (380)
Q Consensus 325 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~-~~-~Kvvi~~ 378 (380)
.. ...+.+.++++++++|++++. +.+.||+++..++....... +. +|+|+++
T Consensus 270 ~~~~~~~~~~~~~l~~~~~~g~l~~~--i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 270 SRDPEALAEALAELFDLLASGKLKPV--IDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred ecchHHHHHHHHHHHHHHHcCCCcce--eccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence 33 112456778899999977655 77899999955555544333 44 7999874
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=376.36 Aligned_cols=342 Identities=22% Similarity=0.337 Sum_probs=275.0
Q ss_pred chhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC
Q 016933 6 GLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
.-||+++++.+.+.++.+++.+++.|+|+++||+|||.++|||++|+.++.|..+...+|.++|||++|+|+++|+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~ 87 (360)
T PLN02586 8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK 87 (360)
T ss_pred hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence 35666777777776666999999999999999999999999999999998876544567999999999999999999999
Q ss_pred CCCCCEEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 86 LEVGDHVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 86 ~~~GdrV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
|++||||++.+. .+|+.|.+|++|++++|++..+. +.. .+ ..| ....|+|+||+.++.+.++++
T Consensus 88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~---~~~--~~-----~~g-----~~~~G~~aey~~v~~~~~~~l 152 (360)
T PLN02586 88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFT---YNS--IG-----HDG-----TKNYGGYSDMIVVDQHFVLRF 152 (360)
T ss_pred cCCCCEEEEccccCcCCCCccccCCCcccCCCcccc---ccc--cc-----cCC-----CcCCCccceEEEEchHHeeeC
Confidence 999999986543 58999999999999999875432 000 00 000 001369999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHHhcCCce
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAKKFGVTD 243 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~~lG~~~ 243 (380)
|+++++++++++++.+.|+|+++.+...+++|++|||.|+|++|++++|+||.+|+ +|++++.++++ .+.++++|+++
T Consensus 153 P~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~ 231 (360)
T PLN02586 153 PDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADS 231 (360)
T ss_pred CCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcE
Confidence 99999999999999999999987666667899999999999999999999999999 67777666554 56778999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 322 (380)
++++.+. +.+++.++ ++|++||++|.+..+..++++++++ |+++.+|..... ..++... +.+++.+.|+.
T Consensus 232 vi~~~~~-----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~~--~~~~~~~~~~~~~~i~g~~ 302 (360)
T PLN02586 232 FLVSTDP-----EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEKP--LELPIFPLVLGRKLVGGSD 302 (360)
T ss_pred EEcCCCH-----HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCCC--CccCHHHHHhCCeEEEEcC
Confidence 9876542 23444443 6999999999877889999999997 999999975432 2222222 33677777776
Q ss_pred ecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+. .+++++++++++++++++. + +.|+|+|+++||+.+.+++. +|+|+++
T Consensus 303 ~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 303 IGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred cCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 432 2468999999999988753 3 68999999999999999886 6999976
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=369.16 Aligned_cols=339 Identities=23% Similarity=0.357 Sum_probs=280.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.+++. +++++++.|.| +++||+|||.++++|++|+..+.... ...+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 78999988775 99999999997 58999999999999999987532211 12368899999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||++.+..+|+.|++|++|.+++|.+.... |.. ..|+|+||+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDFI---GSR-------------------RDGGNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCccee---ccC-------------------CCCccceeEEeehHHeEECcCCCC
Confidence 9999999999999999999999999764332 211 136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++++.+. +++++|++ .+...+++|++|||+|+|.+|++++|+|+.+|++.|++++++++++++++++|+++++++++
T Consensus 137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~ 214 (347)
T PRK10309 137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE 214 (347)
T ss_pred HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc
Confidence 99988774 45667877 46678899999999999999999999999999966889999999999999999999998765
Q ss_pred CCccHHHHHHHHhCC-Ccc-EEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc--cccccccEEEeeeecC
Q 016933 250 HDRPIQEVIAEMTNG-GVD-RSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP--INVLNERTLKGTFFGN 325 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~-~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~--~~~~~~~~i~g~~~~~ 325 (380)
.+ .+.+.+++.+ ++| ++|||+|....+..++++++++ |+++++|.......+.... ..+.+++++.|++.+.
T Consensus 215 ~~---~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 290 (347)
T PRK10309 215 MS---APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNY 290 (347)
T ss_pred cC---HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccc
Confidence 43 3445666655 788 9999999977899999999997 9999999765322222111 1234889999987643
Q ss_pred CC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 326 YK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 326 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.. .++++++++++++++++.+++++++.|+|+|+++|++.+.+++. +|+|+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 347 (347)
T PRK10309 291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQIP 347 (347)
T ss_pred cCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence 22 23578899999999999888889999999999999999988876 69999863
|
|
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=367.09 Aligned_cols=369 Identities=48% Similarity=0.854 Sum_probs=299.1
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
...+|||+++...+++++++++|.|+|.++||+||++++++|++|+..+.|... ..+|.++|||++|+|+++|++++.|
T Consensus 4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (373)
T cd08299 4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV 82 (373)
T ss_pred ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence 345699999988888899999999999999999999999999999999887652 3568899999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|++.+..+|+.|.+|++++++.|+........|.. .++..++..+|....++.+.|+|+||+.++.+.++++|+
T Consensus 83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~ 161 (373)
T cd08299 83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA 161 (373)
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence 9999999999999999999999999999865432111211 112222222232222233357999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++++.+++++.+||+++...+.+++|++|||+|+|.+|++++++|+.+|+.+|+++++++++++.++++|++++++
T Consensus 162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~ 241 (373)
T cd08299 162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECIN 241 (373)
T ss_pred CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence 99999999999999999998778889999999999988999999999999999867999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHh-hcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECV-HDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
..+.+.++.+.+.+++++++|+++|++|++..+..++..+ .++ |+++.+|.......+.+....+.++.++.++..+.
T Consensus 242 ~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
T cd08299 242 PQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGG 320 (373)
T ss_pred ccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHHHhcCCeEEEEEecC
Confidence 7654333666677766668999999999767777767665 565 99999997643323444433344677888887765
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
+...+++.++++++.++.+.+.+++++.|+++++.+|++.+.+++..|+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 321 WKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred CccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 54445677888888888777777788999999999999999887777888763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=365.22 Aligned_cols=333 Identities=24% Similarity=0.428 Sum_probs=279.7
Q ss_pred hhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccC-CCCCCCCccccccccEEEEEeCCCCCCCCCCCEE
Q 016933 14 AVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHV 92 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~-~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV 92 (380)
+++.+++++++++++|.|.|+++||+|||.++++|++|+..+.+. .....+|.++|||++|+|+++|++++.+ +||||
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 345677777999999999999999999999999999999886433 2234678999999999999999999887 99999
Q ss_pred EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC------
Q 016933 93 LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP------ 166 (380)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~------ 166 (380)
++.+..+|++|.+|++|++++|.+.... |.. ..|+|+||+.++.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKMP---GND-------------------MQGGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCcc---CcC-------------------CCCcccceEEechHHeEECCccccccc
Confidence 9999999999999999999999764432 211 136999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++++.+++++.++|+++. ...+++|++|+|+|+|.+|++++|+|+.+|+ +|++++++++|+++++++|++++++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEec
Confidence 8999999999999999999864 5788999999999999999999999999999 8999999999999999999999998
Q ss_pred CCCCC-ccHHHHHHHHhCC-Ccc----EEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEE
Q 016933 247 TSEHD-RPIQEVIAEMTNG-GVD----RSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLK 319 (380)
Q Consensus 247 ~~~~~-~~~~~~~~~~~~~-~~d----~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~ 319 (380)
+.+.+ .++.+.+++++++ ++| ++|||+|+...+..++++++++ |+++++|.......+. ... +.+++++.
T Consensus 217 ~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~--~~~~~~~~~~~~ 293 (349)
T TIGR03201 217 PKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTEYR--LSNLMAFHARAL 293 (349)
T ss_pred CccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCCCcccC--HHHHhhcccEEE
Confidence 76643 2467778888776 776 8999999977888999999997 9999999865332222 222 23677888
Q ss_pred eeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 320 GTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 320 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
|++... .+++.+++++++++++++.++++ .|+|+++++||+.+.+++. +|+++++
T Consensus 294 g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 294 GNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred EEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence 876422 34689999999999998777665 6999999999999998886 6988753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=366.32 Aligned_cols=334 Identities=27% Similarity=0.364 Sum_probs=264.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC---CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT---PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~---~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++...+.+++++++|.|+|+++||||||+++|||++|+..+.|..+. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 688888754434999999999999999999999999999999999886432 246889999999999999999 9999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||+..+..+|+.|.+|++|++++|....... .|.. ...|+|+||+.++.+.++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~-~g~~------------------~~~G~~aey~~~~~~~~~~~P~~ 140 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTE-RGIK------------------GLHGFMREYFVDDPEYLVKVPPS 140 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCcceec-cCcC------------------CCCccceeEEEeccccEEECCCC
Confidence 9999999999999999999999999998654320 0110 01369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhh------hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC---ChhHHHHHHh
Q 016933 168 APLDKVCILSCGVSTGLGATL------NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR---SSKRFEEAKK 238 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~------~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~---~~~~~~~~~~ 238 (380)
++ + ++.+..++++++.++. ....+++|++|||+|+|++|++++|+||.+|+ +|+++++ +++|++++++
T Consensus 141 ~~-~-~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 141 LA-D-VGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CC-c-ceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 98 3 3444445555554432 12336789999999999999999999999999 8988887 6889999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-----ccccc
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-----PINVL 313 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-----~~~~~ 313 (380)
+|++. +++.+.+ +.+ . . ..+++|+|||++|++..+..++++++++ |+++++|...+...+.+. ...+.
T Consensus 218 ~Ga~~-v~~~~~~--~~~-~-~-~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T cd08230 218 LGATY-VNSSKTP--VAE-V-K-LVGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVL 290 (355)
T ss_pred cCCEE-ecCCccc--hhh-h-h-hcCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhh
Confidence 99987 4554433 333 2 1 2348999999999877889999999997 999999987642333333 12234
Q ss_pred cccEEEeeeecCCCCCCChHHHHHHHHcCCC----CCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 314 NERTLKGTFFGNYKPRTDLPSVVDMYMNKQL----ELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 314 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
+++++.|+..+ ..+++.++++++.++.+ .++++++++|+++|+++||+.+.++. .|++|++
T Consensus 291 k~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~ 355 (355)
T cd08230 291 GNKALVGSVNA---NKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW 355 (355)
T ss_pred cCcEEEEecCC---chhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence 89999997643 24578899999988762 35667899999999999999887554 6999875
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=367.89 Aligned_cols=333 Identities=23% Similarity=0.349 Sum_probs=267.5
Q ss_pred hhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 016933 15 VAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLP 94 (380)
Q Consensus 15 ~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~ 94 (380)
+..+.++++++.+++.|+|+++||+|||.++|||++|++++.|......+|.++|||++|+|+++|+++++|++||||++
T Consensus 11 ~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~ 90 (375)
T PLN02178 11 AANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGV 90 (375)
T ss_pred EEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEEEE
Confidence 33344445888899999999999999999999999999998876543456899999999999999999999999999986
Q ss_pred cCcc-CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccch
Q 016933 95 VFTG-ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKV 173 (380)
Q Consensus 95 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~a 173 (380)
.+.. +|+.|.+|++|++++|.+.... +.. . ...| ....|+|+||+.++++.++++|++++++++
T Consensus 91 ~~~~~~cg~C~~C~~g~~~~C~~~~~~---~~~-~------~~~g-----~~~~G~~aey~~v~~~~~~~lP~~ls~~~a 155 (375)
T PLN02178 91 GVIIGSCQSCESCNQDLENYCPKVVFT---YNS-R------SSDG-----TRNQGGYSDVIVVDHRFVLSIPDGLPSDSG 155 (375)
T ss_pred cCccCCCCCChhHhCcchhcCCCcccc---ccc-c------ccCC-----CcCCCccccEEEEchHHeEECCCCCCHHHc
Confidence 6554 6999999999999999875431 000 0 0000 001369999999999999999999999999
Q ss_pred hhcchhhhhhhhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh-HHHHHHhcCCceEecCCCCC
Q 016933 174 CILSCGVSTGLGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK-RFEEAKKFGVTDFVNTSEHD 251 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~-~~~~~~~lG~~~vi~~~~~~ 251 (380)
+++++...|+|+++..... .++|++|+|.|+|++|++++|+||.+|+ +|++++.+++ +.++++++|+++++++.+.
T Consensus 156 a~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~- 233 (375)
T PLN02178 156 APLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVTTDS- 233 (375)
T ss_pred chhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcCcCH-
Confidence 9999999999998644332 3689999999999999999999999999 7888876654 5788899999999886542
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRT 330 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~ 330 (380)
+.+++.++ ++|++||++|.+..+..++++++++ |+++.+|..... ..++.. .+.+++++.|+..+. .+
T Consensus 234 ----~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~~~--~~~~~~~~~~~~~~i~g~~~~~---~~ 302 (375)
T PLN02178 234 ----QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPEKP--LDLPIFPLVLGRKMVGGSQIGG---MK 302 (375)
T ss_pred ----HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCCCC--CccCHHHHHhCCeEEEEeCccC---HH
Confidence 24445443 6999999999876889999999997 999999976432 222222 234888999886543 24
Q ss_pred ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 331 DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
++.++++++++|++++. + +.|+|+++++||+.+.+++. +|+|+++
T Consensus 303 ~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 303 ETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred HHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 68999999999988654 4 67999999999999999877 6999876
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=361.82 Aligned_cols=320 Identities=22% Similarity=0.301 Sum_probs=268.0
Q ss_pred hhhccCCC----CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 14 AVAWEAGK----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 14 ~~~~~~~~----~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
+.+.+++. .++++++|.|.|+++||+|||+++|+|++|+..+.|..+....|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 44555553 38899999999999999999999999999999998865444457899999999999999999999999
Q ss_pred CEEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 90 DHVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 90 drV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
|||++.+. .+|+.|++|++|++++|+...+. |.. ..|+|+||+.++.+.++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRYT---GWD-------------------TDGGYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCcccC---Ccc-------------------cCCcceeEEEeccccEEECCCCC
Confidence 99987653 47999999999999999876543 321 13699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.+++.+.|||+++ ..+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++++.
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~ 217 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY 217 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence 9999999999999999996 46889999999999999999999999999999 799999999999999999999998754
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~ 327 (380)
+.. .+++|+++++.+....+..++++++++ |+++++|...... ..+... .+.+++++.++...
T Consensus 218 ~~~-----------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~-~~~~~~~~~~~~~~i~g~~~~--- 281 (329)
T TIGR02822 218 DTP-----------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDT-PPLNYQRHLFYERQIRSVTSN--- 281 (329)
T ss_pred ccC-----------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccC-CCCCHHHHhhCCcEEEEeecC---
Confidence 321 126899999988878899999999997 9999999753221 122222 23478888887632
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
.++++.+++++++++++. ++++.|+|+|+++||+.+.+++. +|+||
T Consensus 282 ~~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 282 TRADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred CHHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 234678899999999875 36799999999999999998887 69887
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=330.10 Aligned_cols=317 Identities=26% Similarity=0.286 Sum_probs=277.1
Q ss_pred chhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 6 GLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
+.|+..|-+++++.|.+ +++++.|.|+|+++|++||..|+|+|..|..+++|.+...+.|++||-|++|+|+++|+++
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence 45788899999998887 8899999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
++|++||||+... ..|.|+|+..+|...+++
T Consensus 84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence 9999999998551 126999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
+|+.+++.+||++.+.+.|||..+++...+++|++||++.+ |++|+++.|++++.|+ .+|++.++.+|++.+++.|++
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE 193 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence 99999999999999999999999888999999999999965 9999999999999999 889998999999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEe
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKG 320 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g 320 (380)
+.|+++..| +.+.+++++++ |+|+++|.+|. +++..++.+|++. |.++.+|..++.... ++...+ .+++++..
T Consensus 194 h~I~y~~eD--~v~~V~kiTngKGVd~vyDsvG~-dt~~~sl~~Lk~~-G~mVSfG~asgl~~p-~~l~~ls~k~l~lvr 268 (336)
T KOG1197|consen 194 HPIDYSTED--YVDEVKKITNGKGVDAVYDSVGK-DTFAKSLAALKPM-GKMVSFGNASGLIDP-IPLNQLSPKALQLVR 268 (336)
T ss_pred ceeeccchh--HHHHHHhccCCCCceeeeccccc-hhhHHHHHHhccC-ceEEEeccccCCCCC-eehhhcChhhhhhcc
Confidence 999999887 99999999988 99999999999 8999999999996 999999987643222 212212 26666544
Q ss_pred eeecCCCC-CCC----hHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 321 TFFGNYKP-RTD----LPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 321 ~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.++..+.+ +.+ ..+++.++.++.+++. +.++|||+++.+|++.+++... +|+++...
T Consensus 269 psl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~diesrktvGkvlLlp~ 331 (336)
T KOG1197|consen 269 PSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIESRKTVGKVLLLPG 331 (336)
T ss_pred HhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence 33333332 222 4577888889987776 8999999999999999999887 79998764
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=358.77 Aligned_cols=364 Identities=49% Similarity=0.884 Sum_probs=306.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
+||+++.+.++++++++.++|.+.++||+|++.++++|++|+....+... ...|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47888888887899999999999999999999999999999998887543 34678999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++.+..+|+.|.+|+++.+++|+........|.. .+|...+..+|....++.+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999999999999999999999999887654222322 4455556666655555556689999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+++++.+||+++...+.+++|++|||+|+|.+|++++++|+.+|+..|+++++++++.+.++++|++++++.++.
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~ 238 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQ 238 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccc
Confidence 99999999999999988888899999999999889999999999999999668888889999999999999999987765
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhh-cCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH-DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPR 329 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 329 (380)
+..+.+.+++++++++|+++|++|....+..++++++ ++ |+++.+|.........+....+.++.++.|++++.+...
T Consensus 239 ~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 317 (365)
T cd05279 239 DKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGGWKSK 317 (365)
T ss_pred cchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHHhcCCeEEEEeccCCchH
Confidence 3247777888776689999999987688899999999 96 999999875422333444333356778888876655566
Q ss_pred CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 330 TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
+.+.+++++++++.+++.+++++.|+++++++||+.+.+++..|++++
T Consensus 318 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 365 (365)
T cd05279 318 DSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT 365 (365)
T ss_pred hHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 778999999999988876678899999999999999988777787763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=357.24 Aligned_cols=348 Identities=26% Similarity=0.437 Sum_probs=289.5
Q ss_pred hhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC------
Q 016933 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD------ 85 (380)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~------ 85 (380)
||+++.++++.+++++++.|.|+++||+|||.++++|++|+....|..+...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 68888888867999999999999999999999999999999988886543567889999999999999999986
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc-ceEeC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG-CVAKI 164 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~-~~~~~ 164 (380)
|++||+|++.+..+|+.|.+|+.+.+++|....+. |.....+. ....|+|+||+.++.+ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~~------------~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCDD------------PHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---cccccccC------------CCCCcccceEEEecCCCceEEC
Confidence 99999999999999999999999999999876543 32211100 0013699999999996 79999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
|++++.++++.++++++|||+++.+....++|++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++|++.+
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT 226 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeE
Confidence 99999999998989999999998766666799999999999999999999999999788999899999999999999999
Q ss_pred ecCCCCC-ccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEee
Q 016933 245 VNTSEHD-RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGT 321 (380)
Q Consensus 245 i~~~~~~-~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 321 (380)
+++++.+ ..+.+.+.+.+++ ++|++||++|+...+..++++++++ |+++.+|.........+.... +.+++++.++
T Consensus 227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (361)
T cd08231 227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGV 305 (361)
T ss_pred EcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEEc
Confidence 8876543 1234567777776 8999999999867888999999997 999999976432233333322 3478888887
Q ss_pred eecCCCCCCChHHHHHHHHcC--CCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 322 FFGNYKPRTDLPSVVDMYMNK--QLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
..+ ..+++.++++++.++ .+.+.+++++.|+++++++||+.+++++.+|+||++
T Consensus 306 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 306 HNY---DPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred ccC---CchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 643 234688999999888 556667788999999999999999888778999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=355.10 Aligned_cols=335 Identities=31% Similarity=0.503 Sum_probs=284.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-C----------CCCCCccccccccEEEEEe
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-Q----------TPLFPRIFGHEAAGVVESV 79 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-~----------~~~~p~v~G~e~vG~V~~v 79 (380)
|||+++.++++ +++++++.|+|+++||+||+.++++|++|+....+.. . ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999988775 9999999999999999999999999999987654321 1 1236889999999999999
Q ss_pred CCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 80 G~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
|++++.|++||+|++.+..+|++|.+|+++.+++|....+. |+. ..+|+|++|+.++.+
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~~~g~~a~~~~~~~~ 138 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFI---GLG------------------GGGGGFAEYVVVPAY 138 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCcee---ccC------------------CCCCceeeEEEechH
Confidence 99999999999999999999999999999999999754432 211 013699999999999
Q ss_pred ceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc
Q 016933 160 CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239 (380)
Q Consensus 160 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l 239 (380)
.++++|+++++++++.+ .++.+||.++ ..+++++|++|||+|+|.+|++++|+|+.+|+++|+++++++++.++++++
T Consensus 139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ 216 (351)
T cd08233 139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL 216 (351)
T ss_pred HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 99999999999988776 5778999996 778899999999999999999999999999997789998999999999999
Q ss_pred CCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccE
Q 016933 240 GVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERT 317 (380)
Q Consensus 240 G~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~ 317 (380)
|++.++++++.+ +.+.+++.+++ ++|+++|++|....+..++++++++ |+++.+|..... ..+... .+.++++
T Consensus 217 ga~~~i~~~~~~--~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~ 291 (351)
T cd08233 217 GATIVLDPTEVD--VVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEKP--ISFNPNDLVLKEKT 291 (351)
T ss_pred CCCEEECCCccC--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCCCC--CccCHHHHHhhCcE
Confidence 999999887765 88888888776 7999999999767889999999997 999999986522 222322 2348889
Q ss_pred EEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccH-HHHHHHHHcCCc--eeEEEe
Q 016933 318 LKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEI-NKAFEYMVKGEG--LRCIIS 377 (380)
Q Consensus 318 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~a~~~l~~~~~--~Kvvi~ 377 (380)
+.++..+ ..+++++++++++++++++.+++++.|+++|+ ++|++.+.+++. +|+||.
T Consensus 292 i~g~~~~---~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 292 LTGSICY---TREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred EEEEecc---CcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9887643 24679999999999999877778899999996 799999988875 699873
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=357.00 Aligned_cols=338 Identities=22% Similarity=0.355 Sum_probs=275.6
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
++|++++++++++++++++.|+|+++||+|||.++++|++|+..+.|......+|.++|||++|+|+++|+++++|++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd 89 (357)
T PLN02514 10 TTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGD 89 (357)
T ss_pred EEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccCCC
Confidence 89999999999999999999999999999999999999999999887654445789999999999999999999999999
Q ss_pred EEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 91 HVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 91 rV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
+|++.+. .+|++|.+|+++++++|.+..+. +. ++ + ..| ....|+|+||+.++...++++|++++
T Consensus 90 ~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~----~~--~~---~-~~g-----~~~~G~~aey~~v~~~~~~~iP~~~~ 154 (357)
T PLN02514 90 IVGVGVIVGCCGECSPCKSDLEQYCNKRIWS----YN--DV---Y-TDG-----KPTQGGFASAMVVDQKFVVKIPEGMA 154 (357)
T ss_pred EEEEcCccccCCCChhHhCCCcccCCCcccc----cc--cc---c-cCC-----ccCCCccccEEEEchHHeEECCCCCC
Confidence 9986553 47999999999999999875331 00 00 0 000 01136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~ 248 (380)
+++++++++.+.|||+++......++|++++|+|+|++|++++|+||.+|+ +++++++++++.+ .++++|++.++++.
T Consensus 155 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~ 233 (357)
T PLN02514 155 PEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSS 233 (357)
T ss_pred HHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCC
Confidence 999999999999999997666667899999999989999999999999999 7777777776654 45679998887654
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~ 327 (380)
+. +.+.+.+. ++|++||++|....+..++++++++ |+++.+|..... ..+... .+.+++++.|++.+.
T Consensus 234 ~~-----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~i~g~~~~~-- 302 (357)
T PLN02514 234 DA-----AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINTP--LQFVTPMLMLGRKVITGSFIGS-- 302 (357)
T ss_pred Ch-----HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCCC--CcccHHHHhhCCcEEEEEecCC--
Confidence 32 23444433 6999999999867889999999997 999999986432 222222 234888999987543
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
..++.++++++++++++ +++ +.|+|+|+.+||+.+.+++. +|+++.++
T Consensus 303 -~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 303 -MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred -HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 24689999999999764 344 68999999999999998887 69999875
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=352.85 Aligned_cols=362 Identities=36% Similarity=0.636 Sum_probs=290.6
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|+|||+++.++++++++++.++|+++++||+||+.++++|++|+....+..+ ..+|.++|||++|+|+++|+++..|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 5799999988777799999999999999999999999999999999887654 346889999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCcc--ccccCCcceeeEEEEeccceEeCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPV--NHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~--~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
||+|++.+. +|+.|.+|+.+.+++|.........|.. .+|...+...+... ......|+|++|+.++.+.++++|+
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999998764 8999999999999999864422111110 00000000000000 0012347999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++++.+++++.+|+.++...+.++++++|||+|+|.+|++++|+|+++|++++++++++++|.++++++|++.+++
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEec
Confidence 99999999999999999998878888999999999988999999999999999977999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~ 325 (380)
+++.+ +.+.+.+.+++++|+++|++|+...+..++++++++ |+++.+|..........+...+ .+++++.++....
T Consensus 238 ~~~~~--~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (365)
T cd08278 238 PKEED--LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGD 314 (365)
T ss_pred CCCcC--HHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCC
Confidence 87654 777787777448999999999777889999999997 9999999763222233333334 4788888776543
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
....+.+.+++++++++++.+.++ .+.|+++++++|++.+++++..|++|+
T Consensus 315 ~~~~~~~~~~~~~l~~g~l~~~~~-~~~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 315 SVPQEFIPRLIELYRQGKFPFDKL-VTFYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred cChHHHHHHHHHHHHcCCCChHHh-eEEecHHHHHHHHHHHHCCCceEEEEC
Confidence 333456788999999998854333 357999999999999998877898874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=338.85 Aligned_cols=342 Identities=25% Similarity=0.338 Sum_probs=282.5
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++. +++++.+.|.+.++||+||+.++++|++|+..+.+.......|.++|||++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 78999988875 89999999999999999999999999999988877655456689999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCCC
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPLA 168 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~~ 168 (380)
+|++.+..+|+.|..|..|.++.|.+... |.... ....|+|+||+.++.. .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~----~~~~~---------------~~~~g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLG----GWKFS---------------NFKDGVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCC----Ccccc---------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence 99998888999999999999999975421 10000 0113699999999974 899999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.+++.+.|||++ ...+.+++|++|||+|+|.+|++++|+|+.+|+..++++++++++.++++++|++++++++
T Consensus 141 ~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK 219 (351)
T ss_pred CHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence 999999999899999998 4778899999999998899999999999999997799999999999999999999999887
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc---ccccEEEeeeec
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV---LNERTLKGTFFG 324 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~~~~i~g~~~~ 324 (380)
+.+ +.+.+..+..+ ++|+++|++|+...+..++++++++ |+++.+|.........+....+ .+..++.+...
T Consensus 220 ~~~--~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 295 (351)
T cd08285 220 NGD--VVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLC- 295 (351)
T ss_pred CCC--HHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeec-
Confidence 655 77777777665 8999999999877889999999997 9999999765332233322111 24555655432
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCc-eeeeeccccHHHHHHHHHcCCc--eeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKF-ITHRIPFSEINKAFEYMVKGEG--LRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~ 378 (380)
....+.+++++++++++++.+..+ +.+.++++++++||+.+++++. .|++|++
T Consensus 296 -~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 296 -PGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred -CCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 122457899999999999887433 4456899999999999998864 6999875
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=337.98 Aligned_cols=335 Identities=23% Similarity=0.369 Sum_probs=276.6
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++. +++++++.|+|+++||+||+.++++|++|+..+.|..+..++|.++|||++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68888888775 99999999999999999999999999999998887655446789999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++.+..+|+.|.+|+++++++|....+. ++ ..+|+|+||+.++...++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVVL---GV-------------------HRDGGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCceE---EE-------------------ccCCcceeeEEechHHeEECcCCCCH
Confidence 999999999999999999999999754432 11 11368999999999999999999998
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHH-cCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARI-AGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~-~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+.++ +...+.++|. +....++++|++|+|+|+|.+|++++|+|+. +|+..+++++++++|.++++++|++.++++++
T Consensus 138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~ 215 (339)
T PRK10083 138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ 215 (339)
T ss_pred HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence 8876 5567788885 4677889999999999999999999999996 59977888999999999999999999998766
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYKP 328 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~ 328 (380)
.+ +.+.+... +.++|++||++|.+..+..++++++++ |+++.+|.......+ .... ..+++++.++.. .
T Consensus 216 ~~--~~~~~~~~-g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~--~~~~~~~~~~~~~~~~~----~ 285 (339)
T PRK10083 216 EP--LGEALEEK-GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSEPSEI--VQQGITGKELSIFSSRL----N 285 (339)
T ss_pred cc--HHHHHhcC-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcee--cHHHHhhcceEEEEEec----C
Confidence 44 55555331 115679999999767899999999997 999999976432211 1111 236677776543 2
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC-c-eeEEEecCC
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE-G-LRCIISMED 380 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~-~-~Kvvi~~~~ 380 (380)
.+.+++++++++++++.+.+++++.|+++++++|++.++++. . +|+++++.+
T Consensus 286 ~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 286 ANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred hhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 356899999999998877655789999999999999998653 3 699998764
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=343.93 Aligned_cols=322 Identities=17% Similarity=0.194 Sum_probs=250.3
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC----CCCCccccccccEEEEEeCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT----PLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~----~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
..+|++++.+++ +++++++.|+ +++||||||+++|||++|++++.|.+.. ..+|.++|||++|+|+++|.+ +
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~ 77 (341)
T cd08237 2 INQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--T 77 (341)
T ss_pred cccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--c
Confidence 457888888886 9999999995 9999999999999999999999886532 357999999999999998864 7
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++.+...|+ |.+|. ..++|.+..+. |.. ..|+|+||+++|.+.++++|
T Consensus 78 ~~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~vP 132 (341)
T cd08237 78 YKVGTKVVMVPNTPVE-KDEII--PENYLPSSRFR---SSG-------------------YDGFMQDYVFLPPDRLVKLP 132 (341)
T ss_pred cCCCCEEEECCCCCch-hcccc--hhccCCCccee---Eec-------------------CCCceEEEEEEchHHeEECC
Confidence 9999999998888887 55663 56778765432 211 12689999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhh--ccCCCCCCeEEEEcCCHHHHHHHHHHHH-cCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLN--VAKPERGSSVAVFGLGAVGLAAAEGARI-AGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~G~g~~G~~ai~la~~-~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
+++++++|+.+ .+++++|+++.. ...+++|++|||+|+|++|++++|+|+. +|+.+|++++++++|++++++++++
T Consensus 133 ~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~ 211 (341)
T cd08237 133 DNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET 211 (341)
T ss_pred CCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce
Confidence 99999887744 488899988654 3457899999999999999999999986 6655899999999999999887765
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEE
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTL 318 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i 318 (380)
..++ + +.+ ..++|+|||++|+ +..+..++++++++ |+++++|..... ..+... .+.+++++
T Consensus 212 ~~~~--~----~~~------~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~k~~~i 276 (341)
T cd08237 212 YLID--D----IPE------DLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSEYP--VPINTRMVLEKGLTL 276 (341)
T ss_pred eehh--h----hhh------ccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecCCC--cccCHHHHhhCceEE
Confidence 4331 1 111 1169999999994 46789999999997 999999975422 222222 24488999
Q ss_pred EeeeecCCCCCCChHHHHHHHHcC---CCCCCCceeeeeccccHHHHHHH---HHcCCceeEEEecC
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNK---QLELEKFITHRIPFSEINKAFEY---MVKGEGLRCIISME 379 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~a~~~---l~~~~~~Kvvi~~~ 379 (380)
.|+..+ ..++++++++++.++ +.++++++++.|+++++.++.+. +.++..+|+||+++
T Consensus 277 ~g~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~ 340 (341)
T cd08237 277 VGSSRS---TREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE 340 (341)
T ss_pred EEeccc---CHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence 987642 234689999999998 33577788999998655544444 44444479999875
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=337.37 Aligned_cols=360 Identities=41% Similarity=0.728 Sum_probs=291.7
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++.+++++++++|.++++||+|++.++++|+.|+.++.|..+ ..+|.++|+|++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 78999998888899999999999999999999999999999998877554 35678899999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++.+..+|++|.+|++++.++|...... .+|.. +++..++-..|...+...+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999999999999999999999754211 00100 1111111111222222233579999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+++.+.+||.++.....++++++|||+|+|.+|++++++|+.+|+.+|+++++++++.++++++|++++++.+..
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~ 237 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASED 237 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCc
Confidence 99999999999999998888899999999999889999999999999999559999999999999999999999887765
Q ss_pred CccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEEEeeeecCCCC
Q 016933 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFGNYKP 328 (380)
Q Consensus 251 ~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~ 328 (380)
+ +...+.++..+ ++|+++|++++...+..++++++++ |+++.+|.........+....+. ++..+.++.+.....
T Consensus 238 ~--~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (363)
T cd08279 238 D--AVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANP 314 (363)
T ss_pred c--HHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCc
Confidence 4 77778777755 8999999999767889999999997 99999987542223333333333 566777765543334
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEE
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 376 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi 376 (380)
.+.+++++++++++.+.+.+.+.+.|+++++.+|++.+.+++..|.|+
T Consensus 315 ~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 315 RRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred HHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 567889999999998876555778999999999999999888766554
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=334.61 Aligned_cols=330 Identities=25% Similarity=0.458 Sum_probs=278.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++.++++++.+.|.++++||+||+.++++|++|+..+.|..+....|.++|||++|+|+++|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 78999988866799999999999999999999999999999998887654445688999999999999999999999999
Q ss_pred EEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 91 HVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 91 rV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
+|++.+ ...|+.|.+|+.|+++.|.+.... |+. ..|+|++|+.++.+.++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~---~~~-------------------~~g~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKVT---GVT-------------------RDGGYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCcc---Ccc-------------------cCCcceeEEEEchhheEeCCCCCC
Confidence 998743 578999999999999999876653 221 135899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++++.+++.+.+||+++. ...++++++|||+|+|.+|++++++|+++|+ +|+++++++++.+.++++|+++++++.+
T Consensus 139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~ 216 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK 216 (333)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999864 4589999999999999999999999999999 8999999999999999999999998876
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~ 328 (380)
.+ +.+.+++. +++|+++|++|....+..++++++++ |+++.+|.... ...++.. .+.+++++.++..+.
T Consensus 217 ~~--~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~--- 286 (333)
T cd08296 217 ED--VAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAGE--PVAVSPLQLIMGRKSIHGWPSGT--- 286 (333)
T ss_pred cc--HHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCCC--CCCcCHHHHhhcccEEEEeCcCC---
Confidence 54 66666665 36999999998668899999999997 99999998652 2233322 235889999876332
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
..++.++++++.+++++. ++ +.|+++++.+||+.+.+++. +|+|++
T Consensus 287 ~~~~~~~~~~~~~~~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 287 ALDSEDTLKFSALHGVRP--MV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 246788888888886543 34 68999999999999998887 699874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=341.76 Aligned_cols=331 Identities=18% Similarity=0.214 Sum_probs=261.3
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhh-ccCCCC------CCCCccccccccEEEEEeCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFW-ESKGQT------PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~-~g~~~~------~~~p~v~G~e~vG~V~~vG~ 81 (380)
|.|||+++..++. ++++++|.|+|+++||+|||.++|||++|+..+ .|.... ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 5689999988875 999999999999999999999999999999876 443211 24688999999999999999
Q ss_pred CCC-CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc-
Q 016933 82 GVS-DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG- 159 (380)
Q Consensus 82 ~v~-~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~- 159 (380)
+++ .|++||||++.+...|+.|..|. + + |+. ..|+|+||+.++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~---~----------g~~-------------------~~G~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCP-G---Y----------SYT-------------------YPGGLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCC-C---c----------ccc-------------------CCCcceEEEEecHHh
Confidence 998 59999999999888899888772 1 0 110 12599999999987
Q ss_pred ---ceEeCCCCCCccchhhc-chhh-hhhhhhh--------hhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcC--CcEE
Q 016933 160 ---CVAKINPLAPLDKVCIL-SCGV-STGLGAT--------LNVAKPERGSSVAVFGL-GAVGLAAAEGARIAG--ASRI 223 (380)
Q Consensus 160 ---~~~~~p~~~~~~~aa~l-~~~~-~ta~~~l--------~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g--~~~v 223 (380)
.++++|+++++++++.+ +... .+++.++ .+.+++++|++|+|+|+ |++|++++|+|+.+| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 58999999999988754 2111 2233332 24578899999999985 999999999999975 4579
Q ss_pred EEEcCChhHHHHHHhc--------CCc-eEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEE
Q 016933 224 IGVDRSSKRFEEAKKF--------GVT-DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVA 293 (380)
Q Consensus 224 i~~~~~~~~~~~~~~l--------G~~-~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~ 293 (380)
++++++++|++.++++ |++ .++++++. .++.+.+++++++ ++|++||++|.+..+..++++++++ |++
T Consensus 207 i~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~-~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~ 284 (410)
T cd08238 207 VVTDVNDERLARAQRLFPPEAASRGIELLYVNPATI-DDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCL 284 (410)
T ss_pred EEEcCCHHHHHHHHHhccccccccCceEEEECCCcc-ccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeE
Confidence 9999999999999997 776 46776542 1277788888877 8999999999878999999999997 887
Q ss_pred EEEcCC-CCCceeeccccc-cccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc
Q 016933 294 VLVGVP-SKDAVFMTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG 371 (380)
Q Consensus 294 v~~g~~-~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~ 371 (380)
+.++.. .......++... +.+++++.|+..+ ..+++++++++++++++++.+++++.|+|+++++|++.+..+..
T Consensus 285 v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~ 361 (410)
T cd08238 285 NFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGG---NTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPG 361 (410)
T ss_pred EEEEccCCCCccccccHHHhhhcCcEEEEeCCC---CHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCC
Confidence 766432 211112233222 3488999997643 23568999999999999988889999999999999999994434
Q ss_pred eeEEEec
Q 016933 372 LRCIISM 378 (380)
Q Consensus 372 ~Kvvi~~ 378 (380)
+|+||.+
T Consensus 362 gKvvl~~ 368 (410)
T cd08238 362 GKKLIYT 368 (410)
T ss_pred ceEEEEC
Confidence 7999976
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=331.83 Aligned_cols=336 Identities=25% Similarity=0.398 Sum_probs=278.4
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC---------CCCCccccccccEEEEEeCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT---------PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~---------~~~p~v~G~e~vG~V~~vG~ 81 (380)
|||++++++++ +++++++.|++.++||+||+.++++|+.|+....|.... ...|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999988775 999999999999999999999999999999988774311 14677899999999999999
Q ss_pred CCC--CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 82 GVS--DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 82 ~v~--~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
+++ .|++||+|+..+..+|+.|.+|+++.+++|..... +|+.. ...|+|++|+.++.+
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence 998 89999999999999999999999999999974322 23210 013699999999988
Q ss_pred -ceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 160 -CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 160 -~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
.++++|+++++++++.+ .+++++|.++ +.+.+++|++|||.|+|.+|++++++|+++|+..++++++++++.+++++
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 67899999999999988 7889999986 77889999999997779999999999999998678889999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccE
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERT 317 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~ 317 (380)
+|++.++++++.+ +.+.+.+++++ ++|++||++|....+..++++++++ |+++.+|.......+........++++
T Consensus 218 ~g~~~v~~~~~~~--~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~ 294 (350)
T cd08256 218 FGADVVLNPPEVD--VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDPVTVDWSIIGDRKELD 294 (350)
T ss_pred cCCcEEecCCCcC--HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCCCccChhHhhcccccE
Confidence 9999888876554 77778887776 8999999999756788999999997 999999865422222221111236677
Q ss_pred EEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 318 LKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 318 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
+.++.... ..+.+++++++++.+.+.+++++.|+++++.+|++.+++++. +|+++
T Consensus 295 i~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 295 VLGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred EEEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 77765432 358889999999988765556899999999999999998876 58774
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=335.06 Aligned_cols=357 Identities=28% Similarity=0.402 Sum_probs=284.7
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.++++ +++++++.|.| ++++|+||+.++++|++|+..+.|..+..++|.++|||++|+|+++|++++.|++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 78999887754 99999999988 49999999999999999999998876555678999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCC-CcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV-RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINP 166 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~ 166 (380)
|+|++.+...||+|.+|+.+.+++|++....++ .|.. |.....+.|...-.....|+|++|+.++.+ .++++|+
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~ 156 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLY---GHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPD 156 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCccccccccccc---ccccccccccccccCCCCCeeEEEEEcccccCeEEECCC
Confidence 999999989999999999999999997665320 0100 000000000000000113799999999988 8999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++++.+++.+++||+++ ....+++|++|||+|+|.+|++++++|+..|+.+|+++++++++.+++++++...+++
T Consensus 157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~ 235 (386)
T cd08283 157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETIN 235 (386)
T ss_pred CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEc
Confidence 999999999999999999997 7788999999999988999999999999999856999999999999999984446777
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccCh---------------------hhHHHHHHHhhcCCcEEEEEcCCCCCce
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNI---------------------DNMISAFECVHDGWGVAVLVGVPSKDAV 304 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~---------------------~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 304 (380)
+.+.+ .+.+.+++++++ ++|++||++|+. ..+..++++++++ |+++.+|..... .
T Consensus 236 ~~~~~-~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~ 312 (386)
T cd08283 236 FEEVD-DVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGT-V 312 (386)
T ss_pred CCcch-HHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEEEcCCCCC-c
Confidence 65532 277778887776 899999999752 3678899999997 999999876432 2
Q ss_pred eeccc-cccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC-c-eeEEEec
Q 016933 305 FMTKP-INVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE-G-LRCIISM 378 (380)
Q Consensus 305 ~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~-~-~Kvvi~~ 378 (380)
..... ..+.+++++.++.. ...+.+.++++++.++++...+++++.|+++++.+|++.+.+++ . +|++|++
T Consensus 313 ~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 313 NKFPIGAAMNKGLTLRMGQT---HVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred CccCHHHHHhCCcEEEeccC---CchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 22222 22447788877642 22356889999999998876656778999999999999998876 3 6999863
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=329.50 Aligned_cols=341 Identities=31% Similarity=0.431 Sum_probs=283.7
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.+++. +++.+.+.|.| .++||+||+.++++|++|+....+..+...+|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 68888887776 89999999999 89999999999999999999888876656678999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~ 167 (380)
|+|++.+..+||.|.+|.++.+.+|.........| ....|+|++|+.++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLG-------------------NRIDGGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCcccccc-------------------cCCCCeeeEEEEecchhCeEEECCCC
Confidence 99999999999999999999999998754321111 0123699999999987 99999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++++.+++.+.|||+++ ...+++++++|||.|+|.+|++++|+|+.+|+.+++++++++++.++++++|++.++++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 219 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINP 219 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcC
Confidence 99999999999999999996 67889999999998889999999999999996578888889999999999999999988
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
++.+ +.+.+++.+++ ++|++||++|+...+..++++++++ |+++.+|..............+.+++++.++...
T Consensus 220 ~~~~--~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (347)
T cd05278 220 KNGD--IVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVP-- 294 (347)
T ss_pred Ccch--HHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeeccC--
Confidence 7654 77778877765 8999999999866889999999997 9999998654322111112223466777665432
Q ss_pred CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEEec
Q 016933 327 KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCIISM 378 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~ 378 (380)
..+.+.++++++.++.+.+.+.+...++++++++|++.+.+++. .|+++++
T Consensus 295 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 295 -VRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred -chhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 24568899999999988765446788999999999999987765 4888763
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=327.08 Aligned_cols=303 Identities=20% Similarity=0.286 Sum_probs=238.9
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecC-cccchhhccCCCC---CCCCccccccccEEEEEeCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLC-RTDLYFWESKGQT---PLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~-~~D~~~~~g~~~~---~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
+|||+++.+++. ++++++++|+|+++||||||++++|| ++|+.++.|..+. ..+|.++|||++|+|+++|+++ .
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478898887765 99999999999999999999999996 6999888886543 3579999999999999999998 6
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++. |..|.+|.. | ..|+|+||+.++.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~---------------------~~G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G---------------------LFGGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c---------------------cCCcccceEEcCHHHceeCC
Confidence 9999999863 222332210 0 02599999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
++++++. +.+. ..+|||+++.+ . ..+++++||+|+|++|++++|+||.+|++.|++++.+++|++.++++ .++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i 191 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL 191 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence 9998754 4444 57899998644 3 34688999999999999999999999996677788888887766543 345
Q ss_pred cCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 246 NTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
++.+. .+.++|++|||+|++..+..++++++++ |+++++|.......++... .+.+++++.++..+
T Consensus 192 ~~~~~-----------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~~~~~~i~~~~~~- 257 (308)
T TIGR01202 192 DPEKD-----------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYTEPVNFDFVP-AFMKEARLRIAAEW- 257 (308)
T ss_pred Chhhc-----------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecCCCcccccch-hhhcceEEEEeccc-
Confidence 43221 1237999999999977889999999997 9999999864322222221 23478888876532
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
..+++++++++++++++++.+++++.|+|+|+++|++.+.++.. +|++|+
T Consensus 258 --~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 258 --QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred --chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 23569999999999999988889999999999999998876544 799874
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=325.42 Aligned_cols=332 Identities=29% Similarity=0.445 Sum_probs=283.0
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.++++++++.+.++|.+.++||+||+.++++|++|+....|... ...+|.++|+|++|+|+++|+++..|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999988877899999999999999999999999999999998877553 345688999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.+...|+.|.+|+.|..++|.+..+. |.. ..|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP---GIG-------------------TDGGFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc---Ccc-------------------CCCcceeeEEecHHHeEECCCC
Confidence 999999999999999999999999999987765 321 1369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhc-cCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 168 APLDKVCILSCGVSTGLGATLNV-AKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| + +|+++.+++++.+.++++|+++++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVL 217 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEE
Confidence 99999999999999999997665 46888999999999789999999999999 6 888888999999999999999998
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 323 (380)
++++. +.+.++++.++ ++|+++|++|+......++++++++ |+++.+|.... ....... +.+++++.++..
T Consensus 218 ~~~~~---~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~ 290 (340)
T cd05284 218 NASDD---VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH---GRLPTSDLVPTEISVIGSLW 290 (340)
T ss_pred cCCcc---HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC---CccCHHHhhhcceEEEEEec
Confidence 87653 67778877766 8999999999767889999999997 99999987642 1222222 347888887653
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. ..+.+.+++++++++.+.+ ..+.|+++++++|++.+.+++. +|+++.+
T Consensus 291 ~---~~~~~~~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 291 G---TRAELVEVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred c---cHHHHHHHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 2 3456888999999998764 3467999999999999998877 6888764
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=327.30 Aligned_cols=359 Identities=33% Similarity=0.520 Sum_probs=287.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC---CC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD---LE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~---~~ 87 (380)
|||+++..++.++++++.++|.++++||+||+.++++|++|+.+..+..+. .+|.++|||++|+|+.+|+++.. |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999888777999999999999999999999999999999988876543 56789999999999999999988 99
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccC-CCCcccccCCCcccccC-CCccccccCCcceeeEEEEeccceEeCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN-PVRGVMLADGQSRFSIN-GEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~g~~~~~~~-g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
+||+|+..+..+||.|.+|..+.+++|.+.... +..|.. .+|-..+... +..++ ....|+|++|+.++.+.++++|
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P 157 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTL-YDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLP 157 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccc-cCCcccccccCCCccc-cccCCcceeEEEechhhEEECC
Confidence 999999999999999999999999999965421 100000 0000000000 00000 0123699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++.+++.+++.+.|||.++.+...+.++++|||+|+|.+|++++++|+.+|+.+++++++++++.+.++++|++.++
T Consensus 158 ~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~ 237 (367)
T cd08263 158 ESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTV 237 (367)
T ss_pred CCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEe
Confidence 99999999999999999999987888889999999998899999999999999995599898999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 323 (380)
+.++.+ +.+.+++..++ ++|+++|++++......++++++++ |+++.+|.........+....+ .+++++.++..
T Consensus 238 ~~~~~~--~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (367)
T cd08263 238 NAAKED--AVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYG 314 (367)
T ss_pred cCCccc--HHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEecCC
Confidence 887655 77778877665 8999999999854888999999997 9999998654322222333333 46777777432
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
....+.+++++++++++.+.+.+.+++.++++++.++++.+++++. +|+||+
T Consensus 315 --~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 315 --ARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred --CCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 1223468889999999988765557889999999999999998876 688874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=330.39 Aligned_cols=342 Identities=18% Similarity=0.219 Sum_probs=278.1
Q ss_pred chhhhhhhhhhc--cCCC---CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC----------CCCCCccccc
Q 016933 6 GLILTCKAAVAW--EAGK---PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ----------TPLFPRIFGH 70 (380)
Q Consensus 6 ~~~~~~~a~~~~--~~~~---~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~----------~~~~p~v~G~ 70 (380)
..|.+|+|+++. ..+. .+++++++.|.++++||+||+.++++|++|+....+... ....+.++||
T Consensus 8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~ 87 (393)
T cd08246 8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS 87 (393)
T ss_pred cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence 367889999875 2332 378899999999999999999999999999988766411 0112358899
Q ss_pred cccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcce
Q 016933 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTF 150 (380)
Q Consensus 71 e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~ 150 (380)
|++|+|+++|++++.|++||+|++.+...|+.|.+|..+.+++|....+. |+.. ..|+|
T Consensus 88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~---g~~~------------------~~g~~ 146 (393)
T cd08246 88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIW---GYET------------------NYGSF 146 (393)
T ss_pred ceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccc---cccC------------------CCCcc
Confidence 99999999999999999999999999999999999999999999865544 4321 13699
Q ss_pred eeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhc--cCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc
Q 016933 151 SEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV--AKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 151 a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
++|+.++...++++|+++++++++.+++++.|||+++... ++++++++|+|+|+ |.+|++++++|+.+|+ ++++++
T Consensus 147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~ 225 (393)
T cd08246 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV 225 (393)
T ss_pred eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999999999999999999999999997654 67899999999997 9999999999999999 777888
Q ss_pred CChhHHHHHHhcCCceEecCCCCC--------------------ccHHHHHHHHhCC--CccEEEEcccChhhHHHHHHH
Q 016933 228 RSSKRFEEAKKFGVTDFVNTSEHD--------------------RPIQEVIAEMTNG--GVDRSVECTGNIDNMISAFEC 285 (380)
Q Consensus 228 ~~~~~~~~~~~lG~~~vi~~~~~~--------------------~~~~~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~ 285 (380)
+++++.++++++|+++++++++.+ ..+.+.+.+++++ ++|++||++|+ ..+..++++
T Consensus 226 ~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~ 304 (393)
T cd08246 226 SSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFV 304 (393)
T ss_pred CCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHH
Confidence 999999999999999998875431 1256677777776 69999999998 778899999
Q ss_pred hhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHH
Q 016933 286 VHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364 (380)
Q Consensus 286 l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~ 364 (380)
++++ |+++.+|...... ...... .+.++.++.+++... .+.+.+++++++++.+.+ .+++.|+++++++|++
T Consensus 305 l~~~-G~~v~~g~~~~~~-~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~ 377 (393)
T cd08246 305 CDRG-GMVVICAGTTGYN-HTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQ 377 (393)
T ss_pred hccC-CEEEEEcccCCCC-CCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHH
Confidence 9997 9999998754221 112222 234677777765432 246888999999997753 3678999999999999
Q ss_pred HHHcC-Cc-eeEEEe
Q 016933 365 YMVKG-EG-LRCIIS 377 (380)
Q Consensus 365 ~l~~~-~~-~Kvvi~ 377 (380)
.+.++ +. +|+++.
T Consensus 378 ~~~~~~~~~gkvvv~ 392 (393)
T cd08246 378 LMHRNQHHVGNMAVL 392 (393)
T ss_pred HHHhCccccceEEEe
Confidence 99887 55 688874
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=324.76 Aligned_cols=336 Identities=27% Similarity=0.423 Sum_probs=282.0
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC------------CCCCCccccccccEEEEE
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ------------TPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~------------~~~~p~v~G~e~vG~V~~ 78 (380)
|||+++..++.+++++++++|+++++||+||+.++++|++|+..+.+..+ ..++|.++|+|++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 78998888888899999999999999999999999999999998876432 234568899999999999
Q ss_pred eCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 79 VGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 79 vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
+|++++++++||+|++.+...|+.|.+|.++.+++|....+. |. ...|++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL---GI-------------------FQDGGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce---ee-------------------eccCcceeeEEecH
Confidence 999999999999999999999999999999999999764332 11 01368999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+.++++|+++++.+++++.+.+.+||+++.+...++++++|||+|+|.+|++++|+|+.+|+++|+++++++++.+.+++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999997766667789999999889999999999999999778889899999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEE
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTL 318 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i 318 (380)
+|++.+++.++.+ +.+.+.+..++++|++||++|....+..++++++++ |+++.+|............. ..++.++
T Consensus 219 ~g~~~~~~~~~~~--~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~-~~~~~~i 294 (350)
T cd08240 219 AGADVVVNGSDPD--AAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLL-PLRALTI 294 (350)
T ss_pred hCCcEEecCCCcc--HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCCcccHHHH-hhcCcEE
Confidence 9998888876544 666777766658999999999767899999999997 99999987653322222222 2377788
Q ss_pred EeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
.++.... .+.+.+++++++++.+... ..+.|+++++++|++.+.+++. +|++++
T Consensus 295 ~~~~~~~---~~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 295 QGSYVGS---LEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred EEcccCC---HHHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence 7765432 2468889999999977643 5678999999999999988776 698875
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=324.12 Aligned_cols=337 Identities=31% Similarity=0.430 Sum_probs=283.4
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.+++. +++++.+.|+| .++||+||++++++|+.|+.++.|..+...+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68888888776 99999999986 89999999999999999999988866555568899999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~ 167 (380)
|+|++.+...|++|.+|..++++.|....+. .|+ ...|+|++|+.++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------------~~~g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGN-------------------LIDGTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--ccc-------------------ccCCeeeeEEEcccccCceEECCCC
Confidence 9999999999999999999999999855331 011 113689999999987 89999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++..+++.+++.+.+||.++...+.+++++++||+|+|.+|++++|+|+.+|+.+|+++++++++.++++++|++.++++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~ 218 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNS 218 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecc
Confidence 99999999999999999877778889999999999889999999999999994488889899999999999999999988
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~ 325 (380)
++.+ +.+.+.+++++ ++|++||++|....+..++++++++ |+++.+|..... ..+.... +.+++++.+....
T Consensus 219 ~~~~--~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~- 292 (345)
T cd08286 219 AKGD--AIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGKP--VDLHLEKLWIKNITITTGLVD- 292 (345)
T ss_pred cccc--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCCC--CCcCHHHHhhcCcEEEeecCc-
Confidence 7654 77777777766 8999999999877888999999997 999999875422 2233332 4478888764321
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC---ceeEEEec
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE---GLRCIISM 378 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~---~~Kvvi~~ 378 (380)
.+.+.+++++++++.+.+.+++++.|++++++++++.+.+.. ..|++|++
T Consensus 293 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 293 ---TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred ---hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 245888999999998877666789999999999999998762 35999864
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=322.29 Aligned_cols=337 Identities=29% Similarity=0.443 Sum_probs=274.2
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
||++++.++++.+++.+.+.|.|+++||+||++++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899998888779999999999999999999999999999998765521 1234678899999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.+.++|+.|.+|+.+++++|.+.... |+ ..+|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGV---GV-------------------NRPGAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCccee---ee-------------------cCCCcceeeEEechHHeEECcCC
Confidence 999999999999999999999999999865322 11 12369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++++.+ ..+.++++++.. ...+|++|+|.|+|.+|++++|+|+.+|+++|+++++++++.++++++|+++++++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~ 215 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV 215 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence 998888754 455666655432 34689999999889999999999999999668888889999999999999999988
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
++.+ +.+.+++++++ ++|++|||+|+...+..++++++++ |+++.+|.......+.. ...+.+++++.++...
T Consensus 216 ~~~~--~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 289 (341)
T PRK05396 216 AKED--LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGDMAIDW-NKVIFKGLTIKGIYGR-- 289 (341)
T ss_pred cccc--HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCcccH-HHHhhcceEEEEEEcc--
Confidence 7655 77888887765 8999999999877889999999997 99999987643222222 2223477777776421
Q ss_pred CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 327 KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
...+.+..+++++.++ +.+.+.+.+.++++++++|++.+.+++.+|++++++
T Consensus 290 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~ 341 (341)
T PRK05396 290 EMFETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD 341 (341)
T ss_pred CccchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence 1224566788888888 445455778999999999999998776579999874
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=322.80 Aligned_cols=338 Identities=29% Similarity=0.428 Sum_probs=285.8
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++.++++++.+.|.+.++||+||+.++++|+.|+....|..+...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999988887899999999999999999999999999999998888665556688999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCCC
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPLA 168 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~~ 168 (380)
+|+..+..+|++|.+|..|..++|...... |+ .+.|+|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQP---GF-------------------THPGSFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCccc---cc-------------------CCCCcceeEEEcccccCceEECCCCC
Confidence 999877889999999999999999865432 21 113689999999974 899999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.+++.+.+||+++...+++.++++|+|+|+|.+|++++++|+..|+ +|+++.+++++.+.++++|++.+++++
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~ 217 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS 217 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence 9999999999999999998778889999999999999999999999999999 899998999999999999999999887
Q ss_pred C-CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce-eecccccc-ccccEEEeeeecC
Q 016933 249 E-HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV-FMTKPINV-LNERTLKGTFFGN 325 (380)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~-~~~~~i~g~~~~~ 325 (380)
+ .+ +.+.+.++..+++|++||++|+.......+++++++ |+++.+|....... ..+....+ .+++++.++...
T Consensus 218 ~~~~--~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (345)
T cd08260 218 EVED--VAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM- 293 (345)
T ss_pred cchh--HHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC-
Confidence 6 33 667777776668999999999767888999999997 99999987543221 22222223 467777776532
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
..+.+++++++++++++.+.+++.+.++++++++|++.+++++. +|+|++
T Consensus 294 --~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 294 --PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred --CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 23568889999999988765556789999999999999988776 588764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=327.04 Aligned_cols=344 Identities=19% Similarity=0.237 Sum_probs=278.8
Q ss_pred chhhhhhhhhhcc--CCCC---eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC----------CCCCC-cccc
Q 016933 6 GLILTCKAAVAWE--AGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ----------TPLFP-RIFG 69 (380)
Q Consensus 6 ~~~~~~~a~~~~~--~~~~---~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~----------~~~~p-~v~G 69 (380)
-+|.+|||+++.. +++| +++.+.+.|.|+++||+||++++++|++|+....+... ....| .++|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 82 (398)
T TIGR01751 3 VVPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIG 82 (398)
T ss_pred ccchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecc
Confidence 3677899999954 4543 88999999999999999999999999998776544210 11223 3799
Q ss_pred ccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcc
Q 016933 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTST 149 (380)
Q Consensus 70 ~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~ 149 (380)
||++|+|+++|++++.|++||+|++.+..+|++|++|+++++++|...... |+. ...|+
T Consensus 83 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~------------------~~~g~ 141 (398)
T TIGR01751 83 SDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIW---GYE------------------TNFGS 141 (398)
T ss_pred cceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccc---ccc------------------CCCcc
Confidence 999999999999999999999999999999999999999999999765433 321 11369
Q ss_pred eeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhh--ccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q 016933 150 FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN--VAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV 226 (380)
Q Consensus 150 ~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~ 226 (380)
|+||+.++.+.++++|+++++++++.+.+.+.+||.++.. .+.+++|++++|+|+ |.+|++++++|+++|+ +++++
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~ 220 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAV 220 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEE
Confidence 9999999999999999999999999999999999998754 477899999999997 9999999999999999 77788
Q ss_pred cCChhHHHHHHhcCCceEecCCCCC--------------------ccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHH
Q 016933 227 DRSSKRFEEAKKFGVTDFVNTSEHD--------------------RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFEC 285 (380)
Q Consensus 227 ~~~~~~~~~~~~lG~~~vi~~~~~~--------------------~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~ 285 (380)
++++++.+.++++|++.++|+++.+ ..+.+.+.+++++ ++|++|||+|. ..+..++++
T Consensus 221 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~ 299 (398)
T TIGR01751 221 VSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFV 299 (398)
T ss_pred cCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHh
Confidence 8899999999999999999875431 1255667777775 89999999997 678899999
Q ss_pred hhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHH
Q 016933 286 VHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364 (380)
Q Consensus 286 l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~ 364 (380)
++++ |+++.+|..... ....... .+.++.++.++.+.. ..++++++++++++++.. .+++.+++++++++++
T Consensus 300 l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~--~~~~~~~l~~~~~a~~ 372 (398)
T TIGR01751 300 CRRG-GMVVICGGTTGY-NHDYDNRYLWMRQKRIQGSHFAN---LREAWEANRLVAKGRIDP--TLSKVYPLEEIGQAHQ 372 (398)
T ss_pred hccC-CEEEEEccccCC-CCCcCHHHHhhcccEEEccccCc---HHHHHHHHHHHHCCCccc--ceeeEEcHHHHHHHHH
Confidence 9997 999999976432 1222222 233666777765432 234788999999997764 3678999999999999
Q ss_pred HHHcCCc-eeEEEecC
Q 016933 365 YMVKGEG-LRCIISME 379 (380)
Q Consensus 365 ~l~~~~~-~Kvvi~~~ 379 (380)
.+.+++. +|+|+++.
T Consensus 373 ~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 373 DVHRNHHQGNVAVLVL 388 (398)
T ss_pred HHHcCCCCceEEEEeC
Confidence 9988877 69998764
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=321.22 Aligned_cols=338 Identities=26% Similarity=0.421 Sum_probs=267.7
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
.++++++..++ .+++++.+.|.|+++||+||++++++|++|+.+..+... ...+|.++|||++|+|+++|++++.|
T Consensus 17 ~~~~~~~~~~~-~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 95 (364)
T PLN02702 17 ENMAAWLVGVN-TLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL 95 (364)
T ss_pred ccceEEEecCC-ceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence 34444444554 388999999989999999999999999999998776321 22357889999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|++.+..+|++|.+|++|.+++|....+. +.. ...|+|++|+.++.+.++++|+
T Consensus 96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~------------------~~~g~~~~y~~v~~~~~~~~P~ 154 (364)
T PLN02702 96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFF---ATP------------------PVHGSLANQVVHPADLCFKLPE 154 (364)
T ss_pred CCCCEEEEcCCCCCCCCcchhCcCcccCCCcccc---CCC------------------CCCCcccceEEcchHHeEECCC
Confidence 9999999999999999999999999999753221 110 0136999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++++.. .+++++|+++ ....+.++++|||+|+|++|++++|+|+.+|+..|+++++++++.++++++|++.+++
T Consensus 155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVL 232 (364)
T ss_pred CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEe
Confidence 9999888752 2445577775 7788999999999998999999999999999977888889999999999999998876
Q ss_pred CCCCCccHHHHHHHH---hCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeee
Q 016933 247 TSEHDRPIQEVIAEM---TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFF 323 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~---~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~ 323 (380)
++.....+.+.+.++ .++++|++||++|+...+..++++++++ |+++.+|.......+.. .....+++++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~ 310 (364)
T PLN02702 233 VSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNEMTVPL-TPAAAREVDVVGVFR 310 (364)
T ss_pred cCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCcccH-HHHHhCccEEEEecc
Confidence 643222366666554 2348999999999767899999999997 99999997542211111 122347888888653
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeecc--ccHHHHHHHHHcCCc-eeEEEe
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPF--SEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
. ...+.+++++++++.+.+.+++++.|++ +++++|++.+.+++. +|+++.
T Consensus 311 ~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 311 Y----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred C----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 2 2468889999999988765567788665 799999999988766 699985
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=319.53 Aligned_cols=309 Identities=20% Similarity=0.270 Sum_probs=251.9
Q ss_pred hhhhhhccCCCC-----eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCC
Q 016933 11 CKAAVAWEAGKP-----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 11 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
|||+++.++++| +++++++.|.|+++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 689999888753 788899999999999999999999999999988876542 45689999999999999999999
Q ss_pred C-CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 85 D-LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 85 ~-~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
+ |++||+|++... ..|+|+||+.++.+.+++
T Consensus 81 ~~~~vGd~V~~~~~------------------------------------------------~~g~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------------------------------------SYGTYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC------------------------------------------------CCCcchheeeecHHHeEE
Confidence 6 999999985410 015899999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE-c-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF-G-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~-G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|+++++++++++++.+.|||.. .+.... +++.++|+ | +|.+|++++|+|+.+|+ +|+++++++++.++++++|+
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~~-~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~ 189 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALGM-LETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA 189 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHHH-HHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99999999999888889999754 455555 45566665 5 59999999999999999 89999999999999999999
Q ss_pred ceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEE
Q 016933 242 TDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLK 319 (380)
Q Consensus 242 ~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~ 319 (380)
++++++++.+ +.+.+++.+++ ++|++||++|+ ......+++++++ |+++.+|.........++.. .+.+++++.
T Consensus 190 ~~~i~~~~~~--~~~~v~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 265 (324)
T cd08291 190 EYVLNSSDPD--FLEDLKELIAKLNATIFFDAVGG-GLTGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIE 265 (324)
T ss_pred cEEEECCCcc--HHHHHHHHhCCCCCcEEEECCCc-HHHHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEE
Confidence 9999887655 88888888876 89999999998 5667789999997 99999997543321112222 245888998
Q ss_pred eeeecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 320 GTFFGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 320 g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
++....+.. .+.+.+++++++ +.+ ++++++.|+|+|+.+|++.+.+++. +|+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 266 GFWLTTWLQKLGPEVVKKLKKLVK-TEL--KTTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred EEEHHHhhcccCHHHHHHHHHHHh-Ccc--ccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 887654422 235677788877 654 4568899999999999999988766 799873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=319.17 Aligned_cols=343 Identities=26% Similarity=0.345 Sum_probs=273.8
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
||++++.+++ +++++++++|.+ +++||+||++++++|++|+....|..+ ..+|.++|||++|+|+++|+++..+++|
T Consensus 1 m~~~~~~~~~-~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPG-NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCC-ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 6788887776 499999999996 799999999999999999999887654 3468899999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccC---CCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRIN---PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKI 164 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~ 164 (380)
|+|++.+..+|+.|.+|.+++.++|.+..+. ..+|+... ....|+|++|+.++.+ .++++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~g~~a~y~~v~~~~~~~~~l 143 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDM---------------GPYGGGQAEYLRVPYADFNLLKL 143 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCccccccccccccc---------------CCCCCeeeeEEEeecccCcEEEC
Confidence 9999999999999999999999999763221 00011000 0013689999999976 89999
Q ss_pred CCCCCcc---chhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 165 NPLAPLD---KVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 165 p~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
|++++++ .++.+++.+++||+++ ..+.+++|++|||.|+|.+|++++|+|+++|+.+|++++++++|.++++++|+
T Consensus 144 P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~ 222 (375)
T cd08282 144 PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222 (375)
T ss_pred CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 9999998 5677888899999997 77889999999999889999999999999998678889999999999999998
Q ss_pred ceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh-----------hHHHHHHHhhcCCcEEEEEcCCCCCce------
Q 016933 242 TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID-----------NMISAFECVHDGWGVAVLVGVPSKDAV------ 304 (380)
Q Consensus 242 ~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~~G~~v~~g~~~~~~~------ 304 (380)
+ .+++++.+ +.+.+.+++++++|+++||+|+.. .+..++++++++ |+++.+|.......
T Consensus 223 ~-~v~~~~~~--~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~ 298 (375)
T cd08282 223 I-PIDFSDGD--PVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAA 298 (375)
T ss_pred e-EeccCccc--HHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCccccccccc
Confidence 4 56665533 777787776668999999999742 488999999997 99998886431110
Q ss_pred -----eecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 305 -----FMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 305 -----~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
..+... .+.++..+.+... ...+.+.+++++++++++.+..++++.|+++++++|++.+.+++..|+|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~~ 375 (375)
T cd08282 299 AKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIKP 375 (375)
T ss_pred ccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence 111111 1225555555432 2235688899999999887655678999999999999999888755998863
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=314.86 Aligned_cols=338 Identities=28% Similarity=0.404 Sum_probs=275.8
Q ss_pred hhhhhhccCCCCeEEEEeecCCCC-CCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQ-AMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~-~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++..++ .++++++++|.|. ++||+||+.++++|+.|+....|..+ ...|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 6788887664 5999999999985 99999999999999999988877554 3447889999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~ 167 (380)
|+|++.+..+|+.|.+|..+..++|.+.... |.. + ....+|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~------------~~~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLF---GYA---G------------SPNLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccc---ccc---c------------cCCCCCceeEEEEcccccCceEECCCC
Confidence 9999999999999999999999999753221 110 0 00124699999999965 99999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++++.+++++.|||+++. ...+.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.++++++|+. .++.
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~ 218 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF 218 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence 999999999999999999974 47889999999998899999999999999975788888899999999999985 4555
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-ccccccccEEEeeeecC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~i~g~~~~~ 325 (380)
+..+ +.+.+.+++++ ++|++||++|+...+..++++++++ |+++.+|..... ..... ...+.+++++.+..
T Consensus 219 ~~~~--~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~--- 291 (344)
T cd08284 219 EDAE--PVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAE-EFPFPGLDAYNKNLTLRFGR--- 291 (344)
T ss_pred CCcC--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCC-CccccHHHHhhcCcEEEEec---
Confidence 5443 77778887775 8999999999867889999999997 999999976522 11221 22244677766442
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
....+.+.++++++.++.+.+.+++.+.+++++++++++.+.+++.+|+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~ 343 (344)
T cd08284 292 CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343 (344)
T ss_pred CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence 2234578999999999988765556788999999999999887666888875
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=316.04 Aligned_cols=330 Identities=24% Similarity=0.378 Sum_probs=276.2
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.++++++++++.+.|.++++||+||++++++|++|+....|..+..++|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 68999999988899999999999999999999999999999988877665556688999999999999999998899999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++.+..+|+.|++|..+.+++|.+.... |.. ..|+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLGY---GEE-------------------LDGFFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCcccccc---ccc-------------------cCceeeeeeecchhceEECCCCCCH
Confidence 999998899999999999999999875432 211 1368999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
.+++.+++.+.+||+++.+. .++++++|+|+|+ |.+|++++++|+..|+ +++++++++++.+.++++ ++++++.+
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~- 214 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS- 214 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-
Confidence 99999999999999987555 8899999999998 9999999999999999 888888999999999888 77777654
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEeeeecCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~ 328 (380)
+ +.+.++++ +++|+++|++|+ .....++++++++ |+++.+|.......+.... ..+.+++++.+... ..
T Consensus 215 -~--~~~~v~~~--~~~d~~ld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 284 (334)
T PRK13771 215 -K--FSEEVKKI--GGADIVIETVGT-PTLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---AT 284 (334)
T ss_pred -h--HHHHHHhc--CCCcEEEEcCCh-HHHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---CC
Confidence 2 55566654 379999999998 5788999999997 9999999764322211111 12347778877642 23
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+.++++++++.++.+.. .+++.|+++++++|++.+.+++. +|+++++
T Consensus 285 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 285 KRDVEEALKLVAEGKIKP--VIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred HHHHHHHHHHHHcCCCcc--eEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 456889999999997653 46789999999999999988766 6999875
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=314.76 Aligned_cols=334 Identities=25% Similarity=0.415 Sum_probs=274.5
Q ss_pred hhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCE
Q 016933 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDH 91 (380)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gdr 91 (380)
|+++.++.+..+++++++.|+|.++||+||+.++++|++|+....+......+|.++|||++|+|+++|++++.|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 46777777777999999999999999999999999999999998876655567899999999999999999999999999
Q ss_pred EE-ecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 92 VL-PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 92 V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
|+ .....+|++|.+|..+..++|....+.. +|.. .. .....|+|+||+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~-----~~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKY---------PD-----GTITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-cccc---------cC-----CCcCCCcceeEEEechhheEECCCCCCH
Confidence 97 5566799999999999999998765431 0100 00 0122469999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+.+.+.+||+++. ...+++|++++|.|+|.+|++++++|+.+|+ +++++++++++.++++++|++.+++.+..
T Consensus 146 ~~aa~l~~~~~ta~~~~~-~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~~ 223 (337)
T cd05283 146 AAAAPLLCAGITVYSPLK-RNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKDP 223 (337)
T ss_pred HHhhhhhhHHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcch
Confidence 999999999999999864 4568999999998889999999999999999 89999999999999999999998876653
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYKPR 329 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~ 329 (380)
+ +.+ . ..+++|++||++|....+..++++++++ |+++.+|...... .++... +.+++++.++.... .
T Consensus 224 ~--~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~~---~ 291 (337)
T cd05283 224 E--AMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPL--PVPPFPLIFGRKSVAGSLIGG---R 291 (337)
T ss_pred h--hhh---h-ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCCCC--ccCHHHHhcCceEEEEecccC---H
Confidence 3 222 1 2348999999999855689999999997 9999998764322 222232 34888998877543 3
Q ss_pred CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 330 TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
+.++++++++.++++++ . .+.|+++++++||+.+.+++. +|+|++
T Consensus 292 ~~~~~~~~~~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 292 KETQEMLDFAAEHGIKP--W-VEVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHHHHHHHHHhCCCcc--c-eEEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 56888999999997754 3 478999999999999998887 698874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=313.62 Aligned_cols=325 Identities=22% Similarity=0.318 Sum_probs=262.5
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-----------CCCCCccccccccEEEEEe
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-----------TPLFPRIFGHEAAGVVESV 79 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-----------~~~~p~v~G~e~vG~V~~v 79 (380)
|||+++..+ ++++++++.|+|+++||+||+.++++|+.|+....|... ....|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 688888665 599999999999999999999999999999998876221 2235788999999999999
Q ss_pred CCCCCC-CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 80 GEGVSD-LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 80 G~~v~~-~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
|+++++ |++||+|++.+...|+.|+.|..|... ...|+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------------------------~~~g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------------------------EAPGGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------------------------CCCCceeeeEEech
Confidence 999987 999999999999999999999432110 01368999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+.++++|+++++++++ ++.++++||++ ...+++++|++|||+|+|.+|.+++|+|+.+|+..++++++++++.+++++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999998876 66688899998 578899999999999889999999999999999668888889999999999
Q ss_pred cCCceEecCCCCCc--cHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccc
Q 016933 239 FGVTDFVNTSEHDR--PIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNE 315 (380)
Q Consensus 239 lG~~~vi~~~~~~~--~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~ 315 (380)
+|+++++++++.+. .+. .+.....+ ++|+++|++|+...+..++++++++ |+++.+|.......... ...+.++
T Consensus 205 ~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~-~~~~~~~ 281 (341)
T cd08262 205 MGADIVVDPAADSPFAAWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESDNIEP-ALAIRKE 281 (341)
T ss_pred cCCcEEEcCCCcCHHHHHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCCccCH-HHHhhcc
Confidence 99988998766431 222 34444444 8999999999855788899999997 99999987642222111 1113366
Q ss_pred cEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 316 RTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 316 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
+++.++... ..+.+.+++++++++.+.+.+++++.|++++++++++.+.+++. +|+|++
T Consensus 282 ~~~~~~~~~---~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 282 LTLQFSLGY---TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred eEEEEEecc---cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 666654321 22368899999999988766667899999999999999988876 698874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=316.23 Aligned_cols=314 Identities=19% Similarity=0.243 Sum_probs=249.3
Q ss_pred hhhhhhhhhhc-cCCC-C----eEEEEe---ecC-CCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccc--cccE
Q 016933 7 LILTCKAAVAW-EAGK-P----LIIQDV---EVA-PPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH--EAAG 74 (380)
Q Consensus 7 ~~~~~~a~~~~-~~~~-~----~~~~~~---~~p-~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~--e~vG 74 (380)
.++++|.|++. .+.+ | |++++. +.| ++++||||||+.++++|+.|...+.+.......|.++|+ |++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G 84 (348)
T PLN03154 5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFG 84 (348)
T ss_pred ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeE
Confidence 34456777763 2222 1 888774 565 357999999999999999987654432222345889998 8899
Q ss_pred EEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEE
Q 016933 75 VVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYT 154 (380)
Q Consensus 75 ~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~ 154 (380)
+|..+|+++++|++||+|+.. |+|+||.
T Consensus 85 ~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey~ 112 (348)
T PLN03154 85 VSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEYS 112 (348)
T ss_pred EEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEEE
Confidence 999999999999999999732 4799999
Q ss_pred EEeccc--eEe--CCCCCCcc-chhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 155 VVHSGC--VAK--INPLAPLD-KVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 155 ~v~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
.++... +++ +|++++++ +++++++++.|||+++.+.+.+++|++|||+|+ |++|++++|+||.+|+ +|+++++
T Consensus 113 ~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~ 191 (348)
T PLN03154 113 LIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAG 191 (348)
T ss_pred EEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcC
Confidence 998753 544 59999986 688899999999999877889999999999998 9999999999999999 8999989
Q ss_pred ChhHHHHHH-hcCCceEecCCCC-CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce-e
Q 016933 229 SSKRFEEAK-KFGVTDFVNTSEH-DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV-F 305 (380)
Q Consensus 229 ~~~~~~~~~-~lG~~~vi~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~ 305 (380)
++++.++++ ++|++.++++++. + +.+.+++.+++++|++||++|+ ..+..++++++++ |+++.+|....... .
T Consensus 192 ~~~k~~~~~~~lGa~~vi~~~~~~~--~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~ 267 (348)
T PLN03154 192 SSQKVDLLKNKLGFDEAFNYKEEPD--LDAALKRYFPEGIDIYFDNVGG-DMLDAALLNMKIH-GRIAVCGMVSLNSLSA 267 (348)
T ss_pred CHHHHHHHHHhcCCCEEEECCCccc--HHHHHHHHCCCCcEEEEECCCH-HHHHHHHHHhccC-CEEEEECccccCCCCC
Confidence 999999997 7999999998643 3 7777877776689999999998 6889999999997 99999997643211 0
Q ss_pred ---ecccc-ccccccEEEeeeecCCC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 306 ---MTKPI-NVLNERTLKGTFFGNYK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 306 ---~~~~~-~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..... .+.+++++.|+..+.+. ..+.++++++++++|++++. +.+.|+|+++++|++.+++++. +|+||++
T Consensus 268 ~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~--~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~ 345 (348)
T PLN03154 268 SQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYI--EDMSEGLESAPAALVGLFSGKNVGKQVIRV 345 (348)
T ss_pred CCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCc--eecccCHHHHHHHHHHHHcCCCCceEEEEe
Confidence 01111 23488899988654321 12357789999999988754 6678999999999999999887 6999987
Q ss_pred C
Q 016933 379 E 379 (380)
Q Consensus 379 ~ 379 (380)
.
T Consensus 346 ~ 346 (348)
T PLN03154 346 A 346 (348)
T ss_pred c
Confidence 5
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=311.22 Aligned_cols=333 Identities=33% Similarity=0.556 Sum_probs=277.2
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++. +++.++++|.+.++||+|+|.++++|+.|+....+..+...+|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68888887765 89999999999999999999999999999998887665555688999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|+..+..+|+.|..|+.+++++|...+.. ++ ...|+|++|+.++.+ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQVL---GV-------------------HRDGGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCee---ee-------------------cCCCcceeEEEechh-eEECCCCCCH
Confidence 999988899999999999999999533221 11 113699999999999 9999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+ ..+.++++++ ....+++|++|||+|+|.+|++++|+|+.+|+ +|+++.+++++.++++++|+++++++.+.
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~~ 213 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGDE 213 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCccc
Confidence 999877 4677888875 77889999999999889999999999999999 88999899999999999999999988775
Q ss_pred CccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEEEeeeecCCCC
Q 016933 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFGNYKP 328 (380)
Q Consensus 251 ~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~ 328 (380)
+ +.+.+.+.+++ ++|+++|++|+...+..++++++++ |+++.+|..... .......+. +++++.++. ...
T Consensus 214 ~--~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~~--~~~~~~~~~~~~~~~~~~~---~~~ 285 (337)
T cd08261 214 D--VAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGP--VTFPDPEFHKKELTILGSR---NAT 285 (337)
T ss_pred C--HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCCC--CccCHHHHHhCCCEEEEec---cCC
Confidence 5 77888887776 7999999998877889999999997 999999866422 222222222 566666653 223
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC-c-eeEEEec
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE-G-LRCIISM 378 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~-~-~Kvvi~~ 378 (380)
.+.+.+++++++++.+.+.+.+...++++++.++++.+.+++ . +|+|+++
T Consensus 286 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 286 REDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred hhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 346888999999998876334678899999999999998873 5 6999874
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=312.84 Aligned_cols=335 Identities=27% Similarity=0.408 Sum_probs=275.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++..+++ +++++.++|.| +++||+||+.++++|++|+....|..+ ...|.++|||++|+|+++|+++..+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP-TRAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC-CCCCcccccceEEEEEEeCCCCCccCCC
Confidence 68899877665 99999999996 899999999999999999988877554 2347899999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~ 167 (380)
|+|++.+...|+.|.+|+.+..++|.+..+. |.. ..|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGFW---GAF-------------------VDGGQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCcc---cCC-------------------CCCceEEEEEcchhhCceEECCCC
Confidence 9999877788999999999999999865443 211 12589999999975 99999999
Q ss_pred CCccchh-----hcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 168 APLDKVC-----ILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 168 ~~~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
++++.+. ++...+.+||+++ ..+.+++|++++|.|+|.+|++++|+|+++|+++++++++++++.++++++|++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~ 215 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT 215 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 9872221 2235678899885 567899999999998899999999999999996689998899999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEe
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKG 320 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g 320 (380)
.++++.+.+ +.+.+.+.+++ ++|+++|++|+...+..++++++++ |+++.+|..... ..+.. ..+.+++++.+
T Consensus 216 ~v~~~~~~~--~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~ 290 (345)
T cd08287 216 DIVAERGEE--AVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHGG--VELDVRELFFRNVGLAG 290 (345)
T ss_pred eEecCCccc--HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCCC--CccCHHHHHhcceEEEE
Confidence 999887654 77778887766 8999999999878899999999997 999999876422 22222 23457888877
Q ss_pred eeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 321 TFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
... ...+.+.++++++.++++.+.+++++.++++++++|++.+.+++..|++|+.
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~ 345 (345)
T cd08287 291 GPA---PVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP 345 (345)
T ss_pred ecC---CcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence 532 1234688999999999887655567899999999999998887777999863
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=309.86 Aligned_cols=319 Identities=26% Similarity=0.391 Sum_probs=262.6
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++ +++++++++|+|+++||+||+.++++|++|..+..|..+ .|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 6889998765 499999999999999999999999999999998877543 5788999999999999987 78999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
||...+..+|+.|.+|..+.+..|.+.... +... ..|+|++|+.++.+.++++|++++.
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------~~g~~~~~~~v~~~~~~~lP~~~~~ 132 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTVL---GIVD------------------RDGAFAEYLTLPLENLHVVPDLVPD 132 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCccc---CccC------------------CCCceEEEEEechHHeEECcCCCCH
Confidence 999999999999999999999999876543 2110 1258999999999999999999998
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+ ..++++|.. .+...++++++|||+|+|.+|++++|+|+.+|+ +|++++.++++.++++++|++.++++++.
T Consensus 133 ~~aa~~-~~~~~~~~~-~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~~ 209 (319)
T cd08242 133 EQAVFA-EPLAAALEI-LEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEAE 209 (319)
T ss_pred HHhhhh-hHHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCcccc
Confidence 888764 345566654 577889999999999889999999999999999 69999899999999999999888776431
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRT 330 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 330 (380)
..++++|+++|++|+...+..++++++++ |+++..+.......++.. ..+.++.++.++..+
T Consensus 210 ----------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~------ 271 (319)
T cd08242 210 ----------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYAGPASFDLT-KAVVNEITLVGSRCG------ 271 (319)
T ss_pred ----------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCccCHH-HheecceEEEEEecc------
Confidence 12238999999999867888999999997 999987764322222211 123477778776432
Q ss_pred ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 331 DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.+++++++++++++++.+++++.|+++++++||+.+.++..+|++|+.
T Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 319 (319)
T cd08242 272 PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP 319 (319)
T ss_pred cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence 388899999999887666688999999999999999877667999863
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=315.62 Aligned_cols=328 Identities=28% Similarity=0.397 Sum_probs=266.4
Q ss_pred CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC------C-CCCCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 016933 22 PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG------Q-TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLP 94 (380)
Q Consensus 22 ~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~------~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~ 94 (380)
.+++++++.|.++++||+||+.++++|++|+..+.+.. + ...+|.++|||++|+|+++|++++.|++||+|++
T Consensus 38 ~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 38 ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence 49999999999999999999999999999998776311 1 2346789999999999999999999999999999
Q ss_pred cCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC------
Q 016933 95 VFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA------ 168 (380)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~------ 168 (380)
.+..+|+.|++|+++.+.+|.+.... |+. ..|+|++|+.++.+.++++|+.+
T Consensus 118 ~~~~~~~~~~~c~~~~~~~~~~~~~~---g~~-------------------~~g~~~~~v~v~~~~~~~lP~~~~~~~~~ 175 (384)
T cd08265 118 EEMMWCGMCRACRSGSPNHCKNLKEL---GFS-------------------ADGAFAEYIAVNARYAWEINELREIYSED 175 (384)
T ss_pred CCCCCCCCChhhhCcCcccCCCccee---eec-------------------CCCcceeeEEechHHeEECCccccccccC
Confidence 99999999999999999999864432 211 13689999999999999999864
Q ss_pred Cccchhhcchhhhhhhhhhhhc-cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNV-AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
...++++++.++++||+++... .++++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|.++++++|+++++++
T Consensus 176 ~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~ 255 (384)
T cd08265 176 KAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNP 255 (384)
T ss_pred CCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcc
Confidence 1333666777889999997655 689999999999889999999999999998779999899999999999999999887
Q ss_pred CCC-CccHHHHHHHHhCC-CccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeee
Q 016933 248 SEH-DRPIQEVIAEMTNG-GVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFF 323 (380)
Q Consensus 248 ~~~-~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~ 323 (380)
++. ...+.+.+.+++++ ++|+++|++|.. ..+..++++++++ |+++.+|..... ...... ...+..++.++.-
T Consensus 256 ~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~l~~~~~ 332 (384)
T cd08265 256 TKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAATT--VPLHLEVLQVRRAQIVGAQG 332 (384)
T ss_pred cccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCCC--CcccHHHHhhCceEEEEeec
Confidence 653 12377888888877 899999999873 4678999999997 999999865422 222222 2235667776642
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEE
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 376 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi 376 (380)
. .....+.+++++++++.+.+.+++++.|+++++.+|++.+.++..+|+|+
T Consensus 333 ~--~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 333 H--SGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred c--CCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 1 12346899999999998876556788999999999999977765578876
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=310.43 Aligned_cols=336 Identities=29% Similarity=0.478 Sum_probs=277.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++. +.+++.++|++.+++|+||+.++++|+.|+.+..+.......|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 68888887774 89999999999999999999999999999998877553344578999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccc-----eEeCC
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC-----VAKIN 165 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~-----~~~~p 165 (380)
+|++.+..+|++|.+|..++.++|....+. |.. ..|+|++|+.++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKKF---GNL-------------------YDGGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCccee---ccC-------------------CCCcceeeEEecccccccccEEECC
Confidence 999999999999999999999999875442 211 136999999999998 99999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++.+++.+ ..+.+||+++. ...+++|++|||+|+|.+|++++|+|+..|++.|+++.+++++.+.++++|+++++
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~ 215 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI 215 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe
Confidence 99999998876 68899999874 45899999999998899999999999999994488888999999999999999998
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 323 (380)
++++.+ +.+.+.+..++ ++|++||++++...+..++++++++ |+++.+|.............. ..+++.+.++..
T Consensus 216 ~~~~~~--~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (343)
T cd08235 216 DAAEED--LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYA 292 (343)
T ss_pred cCCccC--HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEec
Confidence 887655 77778877776 7999999999766888999999997 999999865432222222221 236666666542
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEe
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 377 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~ 377 (380)
. ..+.+++++++++++.+.+.+.+...|+++++.++++.+.+++.+|+|++
T Consensus 293 ~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~ 343 (343)
T cd08235 293 A---SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT 343 (343)
T ss_pred C---ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence 2 23468889999999987654446788999999999999988774488874
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=310.45 Aligned_cols=334 Identities=29% Similarity=0.491 Sum_probs=269.4
Q ss_pred hhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-C--CCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 13 AAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-Q--TPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 13 a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-~--~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|+++.+.+. +++++.+.|.|.++||+||+.++++|+.|+..+.+.. . ....|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 345666654 9999999999999999999999999999988764211 1 12357789999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|+|++.+..+|+.|++|+.|.+++|....+. +.. ...|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~~~g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATP------------------PVDGTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc---ccc------------------cCCCceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999754221 100 0136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++++.+ .++++||+++ ..+.+++|++|||+|+|.+|++++|+|+.+|+++|+++.+++++.++++++|++.++++++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 216 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT 216 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence 9998877 4788999885 7889999999999988999999999999999954889989999999999999999998876
Q ss_pred CCc-cHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 250 HDR-PIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 250 ~~~-~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
.+. .|.+.+.+.+++ ++|++||++|+...+..++++++++ |+++.+|.......+.+. ....+++.+.++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 291 (343)
T cd05285 217 EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPEVTLPLS-AASLREIDIRGVFRY--- 291 (343)
T ss_pred ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCCccCHH-HHhhCCcEEEEeccC---
Confidence 541 136667777766 7999999999855889999999997 999999865422111111 123366677665422
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEE
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCII 376 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi 376 (380)
.+.+.+++++++++.+.+.+.+.+.|+++++.+|++.+.+++. +|++|
T Consensus 292 -~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 292 -ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred -hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 2568889999999987654456788999999999999988753 79987
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=308.23 Aligned_cols=337 Identities=31% Similarity=0.443 Sum_probs=271.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+.+..++..+.+.+.+.|.|.++|++||++++++|+.|+.++.+.. .....|.++|+|++|+|+.+|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6888888777669999999999999999999999999999988754421 1234577899999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.+..+|+.|.+|..+++++|....+. |. ...|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKIL---GV-------------------DTDGCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccceE---ec-------------------cCCCcceEEEEechHHcEECcCC
Confidence 999999999999999999999999999753221 21 12368999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++.+. ++++.++.++++++. ...++|++|||+|+|.+|++++|+|+.+|+.+|++++++++|.++++++|+++++++
T Consensus 139 ~~~~~-a~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 215 (341)
T cd05281 139 IPPEI-ASIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP 215 (341)
T ss_pred CCHHH-hhhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence 98754 456667788888754 455789999999889999999999999998668888889999999999999988887
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
+..+ +. .+.++.++ ++|++||++|+......++++++++ |+++.+|.........+....+.+++.+.+... .
T Consensus 216 ~~~~--~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 289 (341)
T cd05281 216 REED--VV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGPVDIDLNNLVIFKGLTVQGITG--R 289 (341)
T ss_pred cccc--HH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCCcccccchhhhccceEEEEEec--C
Confidence 6544 66 67777766 8999999999877889999999997 999999875432222222222346667766541 1
Q ss_pred CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 327 KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
...+.+.++++++.++.+.+.+.+.+.++++++++||+.+.+++.+|+|+++
T Consensus 290 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~ 341 (341)
T cd05281 290 KMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341 (341)
T ss_pred CcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence 2234578899999999887655577889999999999999887755998863
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=308.92 Aligned_cols=333 Identities=26% Similarity=0.400 Sum_probs=271.7
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++....+++.+.|+|.++||+||+.++++|++|+....|..+. ..|.++|||++|+|+++|++++.|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 789999888775448999999999999999999999999999888775432 2477899999999999999999999999
Q ss_pred EEEec-CccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 91 HVLPV-FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 91 rV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
+|++. ...+|+.|++|+.+..++|++.... |+. ..|+|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKNA---GYT-------------------VDGGMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCcccc---Ccc-------------------ccCcceeEEEEchHHeEeCCCCCC
Confidence 99864 4678999999999999999876533 221 136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+++++.++..+.|||+++ ..+.+++|++|||+|+|.+|++++++|+.+ |+ +|+++++++++.+.++++|++.+++++
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~ 215 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK 215 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEeccc
Confidence 999999999999999996 778899999999999999999999999984 99 899999999999999999999998875
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~ 327 (380)
..+ .+.+.+++..+ ++|.++++.++...+..++++++++ |+++.+|..... ...... ...++.++.++..+
T Consensus 216 ~~~-~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~--- 287 (338)
T PRK09422 216 RVE-DVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPES--MDLSIPRLVLDGIEVVGSLVG--- 287 (338)
T ss_pred ccc-cHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCCC--ceecHHHHhhcCcEEEEecCC---
Confidence 421 26667777665 6885555555558899999999997 999999875322 222222 22366777665432
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
..+.+++++++++++++.. .+ +.++++++++|++.+.+++. +|+++++.
T Consensus 288 ~~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 288 TRQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred CHHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 1346888999999997753 34 46899999999999988877 59998764
|
|
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=284.51 Aligned_cols=318 Identities=23% Similarity=0.350 Sum_probs=258.9
Q ss_pred hhhhhhhhhhccCCCC---eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCC
Q 016933 7 LILTCKAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~ 82 (380)
++...||+++.+.|.| ++++..++|.....+|+||.+|+.|||+|+..++|.++. +++|.|-|.|++|+|+.+|++
T Consensus 16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~ 95 (354)
T KOG0025|consen 16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSN 95 (354)
T ss_pred cccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCC
Confidence 3445799999999988 888999999887888999999999999999999999874 678999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||+|+... .+.|+|++|.+.+++.++
T Consensus 96 vkgfk~Gd~VIp~~------------------------------------------------a~lGtW~t~~v~~e~~Li 127 (354)
T KOG0025|consen 96 VKGFKPGDWVIPLS------------------------------------------------ANLGTWRTEAVFSESDLI 127 (354)
T ss_pred cCccCCCCeEeecC------------------------------------------------CCCccceeeEeecccceE
Confidence 99999999998552 124799999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----H
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----K 237 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~ 237 (380)
++++.++++.||++.++..|||.+|.+..++.+||+|+-.|+ +++|++.+|+||++|+ +.|.+.|++...+.+ +
T Consensus 128 ~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk 206 (354)
T KOG0025|consen 128 KVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLK 206 (354)
T ss_pred EcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHH
Confidence 999999999999999999999999989999999999999998 9999999999999999 777777887666555 5
Q ss_pred hcCCceEecCCCCC-ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccccccc
Q 016933 238 KFGVTDFVNTSEHD-RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNER 316 (380)
Q Consensus 238 ~lG~~~vi~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 316 (380)
.+||++|+..++.. ....... .....+.+.|||+|+ .....+.+.|..+ |..+.+|.++.....-.....+++.+
T Consensus 207 ~lGA~~ViTeeel~~~~~~k~~--~~~~~prLalNcVGG-ksa~~iar~L~~G-gtmvTYGGMSkqPv~~~ts~lIFKdl 282 (354)
T KOG0025|consen 207 SLGATEVITEEELRDRKMKKFK--GDNPRPRLALNCVGG-KSATEIARYLERG-GTMVTYGGMSKQPVTVPTSLLIFKDL 282 (354)
T ss_pred HcCCceEecHHHhcchhhhhhh--ccCCCceEEEeccCc-hhHHHHHHHHhcC-ceEEEecCccCCCcccccchheeccc
Confidence 59999998654422 1111111 112378999999999 6667889999997 99999999875543333344466999
Q ss_pred EEEeeeecCCCCCC--------ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEEecC
Q 016933 317 TLKGTFFGNYKPRT--------DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCIISME 379 (380)
Q Consensus 317 ~i~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~~ 379 (380)
+++|+++..|...+ .+.++..+++.|++.-. -....+|++...|++...+... +|-+|.++
T Consensus 283 ~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~--~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 283 KLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAP--NCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred eeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccc--cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 99999998776443 25677788899987644 2466799999999987655433 46666653
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=305.92 Aligned_cols=269 Identities=27% Similarity=0.434 Sum_probs=220.1
Q ss_pred cccccccEEEEEeCCCCC------CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCc
Q 016933 67 IFGHEAAGVVESVGEGVS------DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEP 140 (380)
Q Consensus 67 v~G~e~vG~V~~vG~~v~------~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~ 140 (380)
++|||++|+|+++|++|+ +|++||||++.+..+|+.|.+|++|.++.|.+.... |.....+ +
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~~~~--~------- 68 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY---GHEALDS--G------- 68 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc---CcccccC--C-------
Confidence 589999999999999999 899999999999999999999999999999876543 3221000 0
Q ss_pred cccccCCcceeeEEEEecc-ceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC
Q 016933 141 VNHFLGTSTFSEYTVVHSG-CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAG 219 (380)
Q Consensus 141 ~~~~~~~G~~a~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g 219 (380)
....|+|+||+.++++ .++++|+++++++++.+++.+.|+|+++ +.....+|++|||+|+|.+|++++|+||.+|
T Consensus 69 ---~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 69 ---WPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred ---ccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 0013699999999997 7999999999999999999999999986 4455669999999999999999999999999
Q ss_pred CcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 220 ASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 220 ~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+++|++++++++|.++++++|++.++++++ ..+.+.+++.+ ++|++||++|.+..+..++++++++ |+++.+|.
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~ 219 (280)
T TIGR03366 145 AARVVAADPSPDRRELALSFGATALAEPEV----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGS 219 (280)
T ss_pred CCEEEEECCCHHHHHHHHHcCCcEecCchh----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEecc
Confidence 966999999999999999999999887654 33456666665 8999999999878899999999997 99999997
Q ss_pred CCCCceeeccccc-cccccEEEeeeecCCCCCCChHHHHHHHHcC--CCCCCCceeeeeccccH
Q 016933 299 PSKDAVFMTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMNK--QLELEKFITHRIPFSEI 359 (380)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 359 (380)
..+.....++... +.+++++.|+..+ ..+++.++++++.++ ++++.+++++.|+++|+
T Consensus 220 ~~~~~~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 220 VFPGGPVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred CCCCCceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 5422233333333 3489999997643 235689999999874 66677789999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=304.96 Aligned_cols=334 Identities=28% Similarity=0.441 Sum_probs=278.7
Q ss_pred hhhhhhccCCCC-eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAGKP-LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~~~-~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++..++++ +.+++.+.|.+++++|+|++.++++|+.|.....+..+ ....|.++|+|++|+|+++|++++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 689999988887 68888888899999999999999999999998877654 3456788999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|++.+..+|+.|.+|..++.+.|...... |.. ..|+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGMP---GLG-------------------IDGGFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCcc---ccc-------------------cCCcceeeEEechHHeEECCCCC
Confidence 99999999999999999999999999543322 211 13589999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++++.++.++.+||+++.....++++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++..
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~ 217 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL 217 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence 9999999999999999998778889999999998889999999999999999 799999999999999999998888776
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
+.. +.+.+ ....+ ++|+++|++|....+..++++++++ |+++.+|.......+.. ...+.++.++.++...
T Consensus 218 ~~~--~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 289 (338)
T cd08254 218 DDS--PKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDL-SDLIARELRIIGSFGG--- 289 (338)
T ss_pred CcC--HHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCCCCccCH-HHHhhCccEEEEeccC---
Confidence 544 55555 44444 8999999998867899999999997 99999987543222222 1123367777775422
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..+.+.+++++++++.+.+. .+.++++++.++++.+.+++. +|+|+++
T Consensus 290 ~~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 290 TPEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred CHHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 23568889999999987654 578999999999999998877 6998864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=304.75 Aligned_cols=336 Identities=29% Similarity=0.486 Sum_probs=274.6
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+.++ +++++.++|+++++||+||+.++++|+.|+....+.. ....|.++|+|++|+|+.+|+++..|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~-~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG-AYHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCC-CCCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999988765 8999999999999999999999999999998877654 234578899999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|+..+...|+.|.+|..+++..|+..... |.. ..|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDYI---GSR-------------------RDGAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcceE---ecc-------------------cCCcccceEEechHHeEECcCCCCH
Confidence 999999999999999999999999865332 211 2369999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++++.+ ..+++||.++. ...++++++|||+|+|.+|++++|+|+.+|++.|+++++++++.++++++|++.++++++.
T Consensus 137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~ 214 (343)
T cd08236 137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEE 214 (343)
T ss_pred HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccc
Confidence 999887 57889999874 7789999999999889999999999999999549999889999999999999888887653
Q ss_pred CccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc--ccccccEEEeeeecCCC
Q 016933 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI--NVLNERTLKGTFFGNYK 327 (380)
Q Consensus 251 ~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~~i~g~~~~~~~ 327 (380)
. .+.+....++ ++|+++|++|....+..++++++++ |+++.+|.......+..... .+.++.++.++......
T Consensus 215 ~---~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (343)
T cd08236 215 D---VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSA 290 (343)
T ss_pred c---HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeecccc
Confidence 2 4556666665 7999999998767889999999997 99999997643221221111 12467788777653221
Q ss_pred --CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHc-CCc-eeEEE
Q 016933 328 --PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVK-GEG-LRCII 376 (380)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~-~~~-~Kvvi 376 (380)
..+.+++++++++++++.+.+.+.+.+++++++++++.+++ +.. +|+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 291 PFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred ccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 13468889999999987643446788999999999999998 444 58764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=307.43 Aligned_cols=310 Identities=20% Similarity=0.242 Sum_probs=246.8
Q ss_pred hhhhhhccCCC-CeEEEEeec----CCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccc--cEEEEEeCCC
Q 016933 11 CKAAVAWEAGK-PLIIQDVEV----APPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEA--AGVVESVGEG 82 (380)
Q Consensus 11 ~~a~~~~~~~~-~~~~~~~~~----p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~--vG~V~~vG~~ 82 (380)
+|++....+.. .|++++.++ |+|++|||||||++++||+.|+..+.|.... ...|+++|+++ .|++..+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~ 87 (338)
T cd08295 8 LKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSG 87 (338)
T ss_pred EecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecC
Confidence 46666433332 289999988 8899999999999999999999988875432 35678899754 5666668888
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec-cce
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS-GCV 161 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~-~~~ 161 (380)
++.|++||+|+.. |+|+||++++. ..+
T Consensus 88 v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~~ 115 (338)
T cd08295 88 NPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQDL 115 (338)
T ss_pred CCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhce
Confidence 8899999999832 47999999999 799
Q ss_pred EeCC-CCCCcc-chhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 162 AKIN-PLAPLD-KVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 162 ~~~p-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+++| +.+++. +++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+++++
T Consensus 116 ~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 116 RKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKN 194 (338)
T ss_pred eecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 9995 678876 789999999999999878889999999999997 9999999999999999 89999899999999998
Q ss_pred -cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCcee----ecc-cccc
Q 016933 239 -FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF----MTK-PINV 312 (380)
Q Consensus 239 -lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~----~~~-~~~~ 312 (380)
+|+++++++.+.+ .+.+.+++.+++++|++||++|+ ..+..++++++++ |+++.+|........ ... ...+
T Consensus 195 ~lGa~~vi~~~~~~-~~~~~i~~~~~~gvd~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~ 271 (338)
T cd08295 195 KLGFDDAFNYKEEP-DLDAALKRYFPNGIDIYFDNVGG-KMLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNII 271 (338)
T ss_pred hcCCceeEEcCCcc-cHHHHHHHhCCCCcEEEEECCCH-HHHHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHHHh
Confidence 9999999875431 27777777766689999999998 7889999999997 999999875422110 011 1223
Q ss_pred ccccEEEeeeecCCCC--CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 313 LNERTLKGTFFGNYKP--RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 313 ~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+++++.++....+.. .+.+.++++++.++++++. +...|+++++++|++.+++++. +|+|+++
T Consensus 272 ~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 272 YKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred hccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 4677888765433221 1236788899999987654 4456999999999999988876 6999874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=303.84 Aligned_cols=329 Identities=29% Similarity=0.477 Sum_probs=271.5
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++..+++++.+++.+.|.+.++||+|+++++++|++|+....|..+....|.++|+|++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68888876566699999999999999999999999999999999888665556688999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++....+|+.|.+|+.+++++|.+... +|.. ..|+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------~~g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRAE---YGEE-------------------VDGGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCccc---cccc-------------------cCCeeeeEEEechhheEECCCCCCH
Confidence 99999999999999999999999986522 1311 2368999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
++++.+++++.+||+++.. +.+++++++||+|+ |.+|++++++++..|+ +|+++.+++++.+.++++|.+.+++.++
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK 216 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecHH
Confidence 9999999999999999765 88999999999997 9999999999999999 8888889999999999999888776543
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCcee-eccccccccccEEEeeeecCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF-MTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+.+.+.. ++|++++++|. .....++++++++ |+++.+|........ ... ....++.++.++.. ..
T Consensus 217 ----~~~~~~~~~--~~d~v~~~~g~-~~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~ 284 (332)
T cd08259 217 ----FSEDVKKLG--GADVVIELVGS-PTIEESLRSLNKG-GRLVLIGNVTPDPAPLRPG-LLILKEIRIIGSIS---AT 284 (332)
T ss_pred ----HHHHHHhcc--CCCEEEECCCh-HHHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHH-HHHhCCcEEEEecC---CC
Confidence 455555543 69999999998 5688899999997 999999875422111 111 11235666666531 12
Q ss_pred CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 329 RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
.+.+++++++++++.+.+ .+++.|+++++++|++.+.+++. +|++++
T Consensus 285 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 285 KADVEEALKLVKEGKIKP--VIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHHHHHHHHHHHcCCCcc--ceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 346788999999997654 36789999999999999988776 588864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=303.94 Aligned_cols=309 Identities=22% Similarity=0.297 Sum_probs=257.3
Q ss_pred hhhhhhccCCCC---eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCC
Q 016933 11 CKAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 11 ~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
|||+++.+++.+ +++++++.|.+.++||+|||.++++|+.|+..+.|..+ ....|.++|||++|+|+++|++++.|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 688888877654 78899999999999999999999999999998887654 34568899999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|++... .|+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV-------------------------------------------------HGTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC-------------------------------------------------CCcceeEEEEchHHeEECCC
Confidence 99999985420 25899999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
++++++++.+++.+.++|+++ +.+.+++|++|||+|+ |.+|++++|+|+++|+ +++++..++++.+.++++|+++++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVV 189 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEE
Confidence 999999999998899999985 5688999999999987 9999999999999999 788888888888888889999898
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~ 323 (380)
++++.+ +.+.+++++++ ++|++||++|+ .....++++++++ |+++.+|... ......... .+.++.++.++..
T Consensus 190 ~~~~~~--~~~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 264 (324)
T cd08292 190 STEQPG--WQDKVREAAGGAPISVALDSVGG-KLAGELLSLLGEG-GTLVSFGSMS-GEPMQISSGDLIFKQATVRGFWG 264 (324)
T ss_pred cCCCch--HHHHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCC-cEEEEEecCC-CCCCcCCHHHHhhCCCEEEEEEc
Confidence 877654 78888888887 89999999998 5778999999997 9999998753 222222221 2347888888765
Q ss_pred cCCCC-------CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 324 GNYKP-------RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 324 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
..... .+.+.++++++.++.+.+. +.+.|+++++.+|++.+.+++. +|++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 265 GRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 43211 1357889999999987653 4678999999999999987665 588864
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=301.92 Aligned_cols=332 Identities=26% Similarity=0.409 Sum_probs=263.2
Q ss_pred hccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhc-cCCC--CCCCCccccccccEEEEEeCCCCCCCCCCCEE
Q 016933 16 AWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-SKGQ--TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHV 92 (380)
Q Consensus 16 ~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~-g~~~--~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV 92 (380)
+++.++ +++++.++|.++++||+||+.++++|++|+.... +... ...+|.++|+|++|+|+++|++++.|++||+|
T Consensus 3 ~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V 81 (339)
T cd08232 3 IHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRV 81 (339)
T ss_pred eccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEE
Confidence 445554 9999999999999999999999999999987763 3221 12457789999999999999999999999999
Q ss_pred EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccc
Q 016933 93 LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK 172 (380)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~ 172 (380)
++.+..+|+.|.+|..|++.+|.+..+. |.... .....|+|++|+.++.+.++++|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~--------------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~ 144 (339)
T cd08232 82 AVNPSRPCGTCDYCRAGRPNLCLNMRFL---GSAMR--------------FPHVQGGFREYLVVDASQCVPLPDGLSLRR 144 (339)
T ss_pred EEccCCcCCCChHHhCcCcccCccccce---eeccc--------------cCCCCCceeeEEEechHHeEECcCCCCHHH
Confidence 9999999999999999999999874322 11100 001136999999999999999999999998
Q ss_pred hhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 173 VCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 173 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
|+. ..+++++|+++.+...+ ++++|||.|+|.+|++++|+|+.+|+.+++++++++++.++++++|+++++++++.+
T Consensus 145 aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~- 221 (339)
T cd08232 145 AAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDP- 221 (339)
T ss_pred hhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchh-
Confidence 876 56888999987665556 899999988899999999999999986789998999999999999999999876543
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRTD 331 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~ 331 (380)
+.+ .. ...+++|+++|++|+...+..++++++++ |+++.+|..... ...... .+.+++++.+... ..+.
T Consensus 222 -~~~-~~-~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~ 291 (339)
T cd08232 222 -LAA-YA-ADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGP--VPLPLNALVAKELDLRGSFR----FDDE 291 (339)
T ss_pred -hhh-hh-ccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC--ccCcHHHHhhcceEEEEEec----CHHH
Confidence 211 11 11236999999999767788999999997 999999865411 221222 1346777776542 2346
Q ss_pred hHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 332 LPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+++++++++++.+.+.+.+.+.|+++++++|++.+.+++. +|+|+++
T Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 292 FAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 8889999999988766657889999999999999987765 6999864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=300.39 Aligned_cols=334 Identities=31% Similarity=0.494 Sum_probs=278.1
Q ss_pred hhhhhhccCC-CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++..++ ..+++++++.|.|.++||+||+.++++|++|..++.+..+. ...|.++|+|++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7899988776 34999999999999999999999999999999888775432 345678999999999999999999999
Q ss_pred CCEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 89 GDHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 89 GdrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
||+|+..+ ..+|+.|.+|..++.++|...... |+. ..|+|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNS---GYT-------------------VDGTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCcccc---ccc-------------------cCCcceeEEEeccccEEECCCC
Confidence 99998765 688999999999999999765443 221 1258999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+++.++..+.|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.++++|++.+++
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~ 216 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVD 216 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEc
Confidence 9999999999999999998655 58999999999997 7799999999999999 8999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 324 (380)
+++.+ +.+.+.+..++ ++|+++|+.++...+..++++++++ |+++.+|... ..........+ .++.++.+....
T Consensus 217 ~~~~~--~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (341)
T cd08297 217 FKKSD--DVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPP-GGFIPLDPFDLVLRGITIVGSLVG 292 (341)
T ss_pred CCCcc--HHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCC-CCCCCCCHHHHHhcccEEEEeccC
Confidence 87654 77788887765 8999999887768889999999997 9999998754 22223322222 367777775432
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..+.+++++++++++++.+ .+ +.|++++++++++.+.+++. +|+++++
T Consensus 293 ---~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 293 ---TRQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred ---CHHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 1356888999999998754 23 67999999999999988776 6999875
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=299.22 Aligned_cols=332 Identities=30% Similarity=0.450 Sum_probs=269.4
Q ss_pred ccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCccccccccEEEEEeCCCCCCCCCCCEEE
Q 016933 17 WEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVL 93 (380)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~ 93 (380)
++++.++++++.+.|.|+++||+||+.++++|+.|+.++.+.. ....+|.++|+|++|+|+++|++++.|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 5778889999999999999999999999999999988765431 1234577899999999999999999999999999
Q ss_pred ecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccch
Q 016933 94 PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKV 173 (380)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~a 173 (380)
..+.+.|+.|..|..+...+|...++. |.. ..|+|++|+.++.+.++++|++++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKIF---GVD-------------------TDGCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcceE---eec-------------------CCCcceeEEEeehHHcEECcCCCChHhh
Confidence 999999999999999999999876432 210 1368999999999999999999998554
Q ss_pred hhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 174 CILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
+++..+.+|++++ ....++|++++|.|+|.+|++++|+|+.+|++.|+++++++++.++++++|++.++++.+.+
T Consensus 143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~-- 217 (340)
T TIGR00692 143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKED-- 217 (340)
T ss_pred -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccC--
Confidence 5667888898875 34577899999988899999999999999994488888899999999999998888876655
Q ss_pred HHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCCCh
Q 016933 254 IQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDL 332 (380)
Q Consensus 254 ~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 332 (380)
+.+.+.++.++ ++|+++|++|+...+..++++++++ |+++.+|.........+....+.+++++.+.. . ....+.+
T Consensus 218 ~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 294 (340)
T TIGR00692 218 VVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGIT-G-RHMFETW 294 (340)
T ss_pred HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCCCcccchhhhhhhcceEEEEEe-c-CCchhhH
Confidence 77788777665 8999999999767889999999997 99999987532222222212233666666543 1 1222457
Q ss_pred HHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 333 PSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.+++++++++++.+.+.+.+.++++++.++++.+.+++.+|+|+++
T Consensus 295 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 295 YTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred HHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 8899999999887555578999999999999999877667999875
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.99 Aligned_cols=331 Identities=31% Similarity=0.494 Sum_probs=272.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.+++. +++.+.+.|++.++||+||+.++++|+.|+....|..+. .+|.++|+|++|+|+.+|++++.|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999988775 999999999999999999999999999999988876543 3678999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
+|++.+...|+.|.+|..+++++|...... |.. ..|+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTAV---GVT-------------------RNGGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCccee---ccC-------------------CCCcceeEEEecHHHcEECcCCCCH
Confidence 999999999999999999999999765322 110 1368999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
.+++.+ +.+.++++++ ..+.++++++|||+|+|.+|.+++++|+..|+++|+++++++++.+.++++|++.+++.++.
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~ 214 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSRE 214 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCC
Confidence 988766 6788999886 77899999999999889999999999999999548888899999999999999888887665
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEEEeeeecCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFGNYKPR 329 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~ 329 (380)
+ +... +...++++|++||++|....+..++++++++ |+++.+|..............+. +++++.++... .
T Consensus 215 ~--~~~~-~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 286 (334)
T cd08234 215 D--PEAQ-KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----P 286 (334)
T ss_pred C--HHHH-HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----H
Confidence 4 4344 3333348999999998767888999999997 99999987643222333333222 66777776422 2
Q ss_pred CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 330 TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
+.+++++++++++++.+.+.+++.+++++++++++.+.+ +. +|+|+
T Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 287 YTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 458889999999988765556788999999999999988 55 68886
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=301.42 Aligned_cols=299 Identities=17% Similarity=0.213 Sum_probs=231.3
Q ss_pred eEEEEeecCCCC-CCeEEEEEeeeecCcccchhhc---cCCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCcc
Q 016933 23 LIIQDVEVAPPQ-AMEVRIKIKYTSLCRTDLYFWE---SKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTG 98 (380)
Q Consensus 23 ~~~~~~~~p~~~-~~eVlV~v~~~~l~~~D~~~~~---g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~ 98 (380)
+++++.+.|+|. ++||||||.++|||+.|..... +.....++|.++|||++|+|+++|+++++|++||||+.+
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~--- 99 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF--- 99 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec---
Confidence 889999999874 9999999999999998864332 111123567899999999999999999999999999843
Q ss_pred CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccc----hh
Q 016933 99 ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK----VC 174 (380)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~----aa 174 (380)
.++|+||+.++.+.++++|+++++++ ++
T Consensus 100 ------------------------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 100 ------------------------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred ------------------------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 03799999999999999999865433 45
Q ss_pred hcchhhhhhhhhhhhccCCCCC--CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCC
Q 016933 175 ILSCGVSTGLGATLNVAKPERG--SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEH 250 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g--~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~ 250 (380)
++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+.+++ +|+++++++++.
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~ 211 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTD 211 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCC
Confidence 6777899999998777888877 99999997 9999999999999998679999999999999877 999999988775
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC---cee--eccc--cccc--cccEEEee
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD---AVF--MTKP--INVL--NERTLKGT 321 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---~~~--~~~~--~~~~--~~~~i~g~ 321 (380)
+ +.+.+++++++++|++||++|+ ..+..++++++++ |+++.+|..... ... .... ..+. ++++....
T Consensus 212 ~--~~~~i~~~~~~gvd~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (345)
T cd08293 212 N--VAERLRELCPEGVDVYFDNVGG-EISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERF 287 (345)
T ss_pred C--HHHHHHHHCCCCceEEEECCCc-HHHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEE
Confidence 5 8888888776689999999998 5678999999997 999999853211 011 0100 0111 23333222
Q ss_pred eecCCC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 322 FFGNYK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 322 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...... ..+.++++++++.++++.+. ....++++++++|++.+.+++. +|+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 288 LVLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred EeeccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 211111 01236677889999988654 3445699999999999988876 6999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=301.93 Aligned_cols=304 Identities=22% Similarity=0.257 Sum_probs=243.7
Q ss_pred hhhhhhhcc-C-CCC----eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 10 TCKAAVAWE-A-GKP----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 10 ~~~a~~~~~-~-~~~----~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
+||||++.+ + +.+ +++++.+.|+|+++||||||.+++||+.|...... ..++|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 589998887 3 333 88999999999999999999999999887653221 124688999999999985 44
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc---c
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG---C 160 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~---~ 160 (380)
+.|++||||+.. ++|++|+.++.+ .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 679999999832 268999999999 9
Q ss_pred eEeCCCCCC--c---cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH
Q 016933 161 VAKINPLAP--L---DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE 234 (380)
Q Consensus 161 ~~~~p~~~~--~---~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~ 234 (380)
++++|++++ + ..+++++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 999999987 2 2334678899999999878899999999999986 9999999999999999 8999999999999
Q ss_pred HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce--e---e-cc
Q 016933 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV--F---M-TK 308 (380)
Q Consensus 235 ~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~--~---~-~~ 308 (380)
+++++|+++++++++.+ +.+.+++.+++++|++||++|+ ..+..++++++++ |+++.+|....... . . +.
T Consensus 183 ~l~~~Ga~~vi~~~~~~--~~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~ 258 (329)
T cd08294 183 WLKELGFDAVFNYKTVS--LEEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQ 258 (329)
T ss_pred HHHHcCCCEEEeCCCcc--HHHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccH
Confidence 99999999999987765 7788888776689999999998 7889999999997 99999986422111 1 1 11
Q ss_pred ccccccccEEEeeeecCCC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 309 PINVLNERTLKGTFFGNYK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 309 ~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...+.+++++.++....+. ..+.+++++++++++++.+. ....++++++++|++.+++++. +|+++++
T Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 259 ETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred HHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 1123477788876543321 11236678899999988765 3456899999999999988877 6999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=298.57 Aligned_cols=335 Identities=24% Similarity=0.364 Sum_probs=274.8
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++...+.+ +++.+.+.|.+.+++|+|++.++++|++|+..+.|..+ ...+|.++|||++|+|+.+|++++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 678888744433 77888888888999999999999999999998877543 234578999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.+..+|+.|.+|.++.+++|+...+. |.. ..|+|++|+.++.+.++++|+.
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~-------------------~~g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGIL---GEH-------------------VDGGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhcccccccccccccc---ccc-------------------cCcceeEEEEechHHceeCCCC
Confidence 999999999999999999999999999865332 321 1258999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++++.+++.+.+||+++.+...+.++++++|+|+ +.+|++++++++..|+ +++.+++++++.+.+++++.+.+++
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~ 217 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVID 217 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEe
Confidence 9999999999999999999878888999999999997 7999999999999999 7888889999999999898877776
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~~ 324 (380)
..+.+ +.+.+.+...+ ++|++++++|. ..+...+++++++ |+++.++..... ...... ..+.+++++.+....
T Consensus 218 ~~~~~--~~~~~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 292 (342)
T cd08266 218 YRKED--FVREVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCGATTGY-EAPIDLRHVFWRQLSILGSTMG 292 (342)
T ss_pred cCChH--HHHHHHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcC-CEEEEEecCCCC-CCCcCHHHHhhcceEEEEEecC
Confidence 65433 66666666655 89999999998 6788999999997 999999876432 112222 224467777776532
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. ...+.+++++++++.+.+ ++++.|+++++++|++.+.+++. +|+++++
T Consensus 293 ~---~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 293 T---KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred C---HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 2 235788889999987654 46789999999999999987766 6998863
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=298.34 Aligned_cols=323 Identities=27% Similarity=0.386 Sum_probs=266.4
Q ss_pred hhhhhhccCCC----CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 11 CKAAVAWEAGK----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 11 ~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
|||+++.+++. ++++.+.+.|.++++||+||+.++++|++|+....|..+....|.++|||++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 67888887773 58888888888999999999999999999999888766555678899999999999999999999
Q ss_pred CCCCEEEec-CccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 87 EVGDHVLPV-FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 87 ~~GdrV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
++||+|++. ..++|++|.+|+.+.+++|....+. |+. ..|+|++|+.++.+.++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT---GYT-------------------VDGGYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCcccc---ccc-------------------cCCceEEEEEecchhEEECC
Confidence 999999764 4578999999999999999866544 221 13589999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++.+++.+++.+.+||+++ ..+++++++++||+|+|.+|++++++|+..|+ +|+++.+++++.+.++++|++.++
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 216 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAG 216 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEe
Confidence 9999999999999999999997 88999999999999999999999999999999 899998999999999999998887
Q ss_pred cCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 246 NTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
+.+.. ..+++|+++++.+....+..++++++++ |+++.+|... ......+...+.++..+.++...
T Consensus 217 ~~~~~-----------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~- 282 (329)
T cd08298 217 DSDDL-----------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHM-SDIPAFDYELLWGEKTIRSVANL- 282 (329)
T ss_pred ccCcc-----------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCC-CCCCccchhhhhCceEEEEecCC-
Confidence 76542 1237999999977767899999999997 9999988543 11111111223355666665422
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
..+.+.+++++++++.+.+ .++.|+++++++|++.+++++. +|+|+
T Consensus 283 --~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 283 --TRQDGEEFLKLAAEIPIKP---EVETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred --CHHHHHHHHHHHHcCCCCc---eEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 2235788889999987754 3588999999999999988776 58764
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=298.87 Aligned_cols=291 Identities=19% Similarity=0.241 Sum_probs=235.3
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCC
Q 016933 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGD 102 (380)
Q Consensus 23 ~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~ 102 (380)
+++.+++.|+|++|||||||.++++|+.+.. |.......|.++|.|++|+|+++|+ .|++||||+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 8899999999999999999999999996543 4333334578999999999999874 59999999843
Q ss_pred CccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC----CCCCCccch-hhcc
Q 016933 103 CRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI----NPLAPLDKV-CILS 177 (380)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~----p~~~~~~~a-a~l~ 177 (380)
++|++|+.++.+.+.++ |++++++++ ++++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 26899999999988887 899999987 6789
Q ss_pred hhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHH
Q 016933 178 CGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQE 256 (380)
Q Consensus 178 ~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~ 256 (380)
+++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++++.++++++|++.++++++.+ .+.+
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~-~~~~ 198 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVK-SLEE 198 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccc-cHHH
Confidence 999999999888899999999999996 9999999999999999 899998999999999999999999887632 2555
Q ss_pred HHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc---eee---ccccccccccEEEeeeecCCCC--
Q 016933 257 VIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA---VFM---TKPINVLNERTLKGTFFGNYKP-- 328 (380)
Q Consensus 257 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---~~~---~~~~~~~~~~~i~g~~~~~~~~-- 328 (380)
.++..+++++|++||++|+ ..+..++++++++ |+++.+|...... ... .....+.+++++.++....+..
T Consensus 199 ~~~~~~~~gvdvv~d~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (325)
T TIGR02825 199 TLKKASPDGYDCYFDNVGG-EFSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEV 276 (325)
T ss_pred HHHHhCCCCeEEEEECCCH-HHHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhh
Confidence 6666655589999999998 5779999999997 9999998753211 111 1111233677887765432211
Q ss_pred -CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 329 -RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 329 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
.+.+++++++++++++++. +...|+++++.+|++.+++++. +|+|++
T Consensus 277 ~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 277 RQKALKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred hHHHHHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 2357889999999988765 4567899999999999998876 698874
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=297.60 Aligned_cols=320 Identities=26% Similarity=0.338 Sum_probs=257.1
Q ss_pred hhhhhhccCC-CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++..++ +.+++++.+.|+++++||+||+.++++|++|+....+ .....+|.++|||++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~-~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINA-VKVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhC-CCCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6788886665 3488888888889999999999999999999988764 2222457789999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|+|++.+..+|++|++|++|.+++|+...+. |+ ...|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGII---GV-------------------VSNGGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCcccee---ec-------------------cCCCceeeEEEcCHHHceeCCCCCC
Confidence 9999999999999999999999999865432 21 1236899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+++++.+++.+.+||+++. .+++++|++++|+|+ |.+|++++++|+++|+ +|+++. +.++++++|++++++.+
T Consensus 138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~ 211 (325)
T cd08264 138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD 211 (325)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence 9999999999999999965 488999999999997 9999999999999999 777775 23777889998888764
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~ 327 (380)
+ ..+.+++++ +++|+++|++|+ ..+...+++++++ |+++.+|... ......+...+ .++.++.++..+.
T Consensus 212 ~----~~~~l~~~~-~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 281 (325)
T cd08264 212 E----VEEKVKEIT-KMADVVINSLGS-SFWDLSLSVLGRG-GRLVTFGTLT-GGEVKLDLSDLYSKQISIIGSTGGT-- 281 (325)
T ss_pred H----HHHHHHHHh-CCCCEEEECCCH-HHHHHHHHhhccC-CEEEEEecCC-CCCCccCHHHHhhcCcEEEEccCCC--
Confidence 3 345566666 689999999998 6889999999997 9999998742 11122222222 3566777764332
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeE
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRC 374 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kv 374 (380)
.+.+.++++++... .+ .+.+.|+++++++|++.+.+++. +|+
T Consensus 282 -~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 282 -RKELLELVKIAKDL--KV--KVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred -HHHHHHHHHHHHcC--Cc--eeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 34688888888543 22 35688999999999999887665 354
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=294.64 Aligned_cols=327 Identities=30% Similarity=0.480 Sum_probs=268.2
Q ss_pred hhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCE
Q 016933 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDH 91 (380)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gdr 91 (380)
||+++.++|..+++++.+.|.+.+++|+|++.++++|++|+....+......+|.++|||++|+|+++|++++.|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 57788888666999999999999999999999999999999988876554556889999999999999999999999999
Q ss_pred EEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 92 VLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 92 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
|++.+. .+|+.|.+|+++++++|.+..+. ++. ..|+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNT---GYT-------------------TQGGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCcccc---Ccc-------------------cCCccccEEEEcHHHeEECCCCCCH
Confidence 986543 67999999999999999986544 210 1258999999999999999999999
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
.+++.+.+.+.+||.++.. ..++++++|||+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++....
T Consensus 139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~ 216 (330)
T cd08245 139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE 216 (330)
T ss_pred HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCc
Confidence 9999999999999998744 789999999999888899999999999999 89999999999999999999888876543
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPR 329 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~ 329 (380)
+ .... ..+++|+++|+++.......++++++++ |+++.++..... ....... .+.++.++.++..+. .
T Consensus 217 ~--~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~ 285 (330)
T cd08245 217 L--DEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESP-PFSPDIFPLIMKRQSIAGSTHGG---R 285 (330)
T ss_pred c--hHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCC-ccccchHHHHhCCCEEEEeccCC---H
Confidence 3 2222 2247999999988767889999999997 999999865322 1111111 233667777765432 2
Q ss_pred CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 330 TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
..+.++++++.++.+.+ ..+.|+++++.++|+.+.+++. +|+|+
T Consensus 286 ~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 286 ADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 46788889999997764 3578999999999999988776 57764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=293.93 Aligned_cols=323 Identities=24% Similarity=0.294 Sum_probs=254.7
Q ss_pred hhhhhhccCCCC--eEEEE-eecCCCCCCeEEEEEeeeecCcccchhhccCCC--------------------CCCCCcc
Q 016933 11 CKAAVAWEAGKP--LIIQD-VEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--------------------TPLFPRI 67 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--------------------~~~~p~v 67 (380)
|||+++...+.+ +++.+ .+.|.|.+++|+|||.++++|++|+.+..|..+ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 678887766643 55543 467778999999999999999999988776432 2456889
Q ss_pred ccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCC
Q 016933 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGT 147 (380)
Q Consensus 68 ~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~ 147 (380)
+|||++|+|+++|++++.|++||||++.+...|+.|..|.. |. .. |.. ..
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~---~~---~~~-------------------~~ 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----ID---YI---GSE-------------------RD 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----cc---cc---CCC-------------------CC
Confidence 99999999999999999999999999988888888766421 21 10 110 02
Q ss_pred cceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q 016933 148 STFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV 226 (380)
Q Consensus 148 G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~ 226 (380)
|+|++|+.++...++++|+++++.+++.+++++.+||+++ ....+++|+++||+|+ |.+|++++++|+++|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 5899999999999999999999999999999999999986 7788999999999998 9999999999999999 68888
Q ss_pred cCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCcee
Q 016933 227 DRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF 305 (380)
Q Consensus 227 ~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 305 (380)
++++ +.+.++++|++.+++.+... +.+ ...+.+ ++|++||++|+ ..+..++++++++ |+++.+|... ....
T Consensus 209 ~~~~-~~~~~~~~g~~~~~~~~~~~--~~~--~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~-~~~~ 280 (350)
T cd08274 209 AGAA-KEEAVRALGADTVILRDAPL--LAD--AKALGGEPVDVVADVVGG-PLFPDLLRLLRPG-GRYVTAGAIA-GPVV 280 (350)
T ss_pred eCch-hhHHHHhcCCeEEEeCCCcc--HHH--HHhhCCCCCcEEEecCCH-HHHHHHHHHhccC-CEEEEecccC-Cccc
Confidence 6665 88888999997666544332 333 344444 89999999998 6889999999997 9999998653 2212
Q ss_pred eccccc-cccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 306 MTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 306 ~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.++... +.++.++.++... ..+.+.++++++.++++.. ++++.|+++++++|++.+.+++. +|+++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 281 ELDLRTLYLKDLTLFGSTLG---TREVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred cCCHHHhhhcceEEEEeecC---CHHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 233333 4477888887643 2346888999999997653 46788999999999999987766 6988863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=291.19 Aligned_cols=314 Identities=22% Similarity=0.276 Sum_probs=252.8
Q ss_pred hhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 10 TCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 10 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
+|||+++.+++.+ +++++++.|+|+++||+||+.++|+|++|+.+..+..+....|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 5899999887775 88999999999999999999999999999988877665555688999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+... .+.|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~------------------------------------------------~~~g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQ------------------------------------------------SALGAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECC------------------------------------------------CCCcceeeEEEcCHHHceeCCCC
Confidence 999997431 01258999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++++.+++.+.+||.++...+.+++|++++|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++++++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~ 191 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVIN 191 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEc
Confidence 9999999999999999998777788999999999975 9999999999999999 7888889999999999999988888
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccccc-ccE-E-Eeee
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLN-ERT-L-KGTF 322 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~-i-~g~~ 322 (380)
.+..+ +.+.+++.+++ ++|+++|++|+ ..+..++++++++ |+++.+|..... ........+.+ +.. . ....
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (327)
T PRK10754 192 YREEN--IVERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR-GLMVSFGNASGP-VTGVNLGILNQKGSLYVTRPSL 266 (327)
T ss_pred CCCCc--HHHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC-CEEEEEccCCCC-CCCcCHHHHhccCceEEeccee
Confidence 76554 77788888776 89999999998 6788899999997 999999876421 11111111111 111 0 1100
Q ss_pred ecCCCCC----CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 323 FGNYKPR----TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 323 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
....... +.+.++++++.++.+++..+..+.|+++++.++++.+.+++. +|+||.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (327)
T PRK10754 267 QGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI 326 (327)
T ss_pred ecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 0001111 124567889999988765445788999999999999988776 699985
|
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=289.24 Aligned_cols=308 Identities=17% Similarity=0.187 Sum_probs=244.4
Q ss_pred hhhhhccC---CCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 12 KAAVAWEA---GKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 12 ~a~~~~~~---~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
||+++.++ +.+ +++.++|.|+|+++||+||++++++|+.|..+..+..+...+|.++|+|++|+|+++|++++.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 56777665 443 8888899999999999999999999999998887765545568899999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|+.... ....|+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~----------------------------------------------~~~~g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD----------------------------------------------IDRPGSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC----------------------------------------------CCCCCcccceEEEcHHHcccCCC
Confidence 99999985310 00135899999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCC-----CCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhc
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPER-----GSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKF 239 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~l 239 (380)
++++++++.+++++.|||+++....++++ |++|||+|+ |.+|++++|+|+.+ |+ +|+++.+++++.+.++++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~ 193 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL 193 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence 99999999999999999999877788876 999999986 99999999999998 99 899998999999999999
Q ss_pred CCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEE
Q 016933 240 GVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTL 318 (380)
Q Consensus 240 G~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i 318 (380)
|++++++++. + +.+.+++...+++|+++|++++.......+++++++ |+++.++... .++ ...+. ++.++
T Consensus 194 g~~~~~~~~~-~--~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~---~~~--~~~~~~~~~~~ 264 (336)
T TIGR02817 194 GAHHVIDHSK-P--LKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDPA---ELD--ISPFKRKSISL 264 (336)
T ss_pred CCCEEEECCC-C--HHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEcccc---ccc--chhhhhcceEE
Confidence 9999998654 2 777777754448999999987667889999999997 9999885321 112 11222 44555
Q ss_pred EeeeecC--CCC-------CCChHHHHHHHHcCCCCCCCceeeee---ccccHHHHHHHHHcCCc-eeEEEe
Q 016933 319 KGTFFGN--YKP-------RTDLPSVVDMYMNKQLELEKFITHRI---PFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 319 ~g~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
.+..+.. ... .+.+.++++++.++.+++. +.+.+ +++++++|++.+.+++. +|++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 265 HWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred EEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 4432221 000 1236788899999977543 33444 46899999999998877 688864
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=290.77 Aligned_cols=314 Identities=24% Similarity=0.336 Sum_probs=254.4
Q ss_pred hhhhhhccCCCC---eEEEEeecCCCCC-CeEEEEEeeeecCcccchhhccCCCCC-C----CCccccccccEEEEEeCC
Q 016933 11 CKAAVAWEAGKP---LIIQDVEVAPPQA-MEVRIKIKYTSLCRTDLYFWESKGQTP-L----FPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 11 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~eVlV~v~~~~l~~~D~~~~~g~~~~~-~----~p~v~G~e~vG~V~~vG~ 81 (380)
|||+++.+.+.+ +.+++.+.|.|.+ +||+||+.++++|+.|+....|..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999888875 8999999998887 999999999999999999887755321 2 577999999999999999
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
++..|++||+|++... +.|+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~------------------------------------------------~~g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP------------------------------------------------GLGTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC------------------------------------------------CCccchheEeccHHHe
Confidence 9999999999985421 1258999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh----hHHHHH
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS----KRFEEA 236 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~----~~~~~~ 236 (380)
+++|+++++++++.+++.+.|||+++.....+++|++|||+|+ |.+|++++|+|++.|+ +++++.+++ ++.+.+
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 191 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL 191 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence 9999999999999999999999999877788999999999987 9999999999999999 777776665 678888
Q ss_pred HhcCCceEecCCCC-CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-ccccc
Q 016933 237 KKFGVTDFVNTSEH-DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLN 314 (380)
Q Consensus 237 ~~lG~~~vi~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~ 314 (380)
+++|+++++++++. ...+.+.++...++++|++||++|+ ..+...+++++++ |+++.+|..... ...... ..+.+
T Consensus 192 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~ 268 (341)
T cd08290 192 KALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGG-KSATELARLLSPG-GTMVTYGGMSGQ-PVTVPTSLLIFK 268 (341)
T ss_pred HhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCc-HhHHHHHHHhCCC-CEEEEEeccCCC-CcccCHHHHhhC
Confidence 99999999887654 0126677777665589999999998 5677889999997 999999865322 222222 22457
Q ss_pred ccEEEeeeecCCCC--C-----CChHHHHHHHHcCCCCCCCceeeee---ccccHHHHHHHHHcCCc-eeEEEec
Q 016933 315 ERTLKGTFFGNYKP--R-----TDLPSVVDMYMNKQLELEKFITHRI---PFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 315 ~~~i~g~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+.++.+........ . ..+.++++++.++++.+. ....+ +++++.++++.+.+++. +|+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 269 DITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred CceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 88888876543211 1 147788889999987654 34456 99999999999988776 5999874
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=283.20 Aligned_cols=300 Identities=27% Similarity=0.455 Sum_probs=247.3
Q ss_pred hhhhhhccCC-CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||++..+.+ +.+++++++.|.+.++||+||+.++++|++|.....+.......|.++|+|++|+|+++|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 5788877655 249999999999999999999999999999998887765334457899999999999999999999999
Q ss_pred CEEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 90 DHVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 90 drV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
|+|++.+. .+|+.|++|..+.+..|...... |. ...|+|++|+.++.+.++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKGI---GT-------------------QADGGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCcee---ee-------------------cCCCceEEEEEcchHHeEECcCCC
Confidence 99998774 78999999999999999864221 11 123699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE--cCChhHHHHHHhcCCceEec
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGV--DRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~--~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++ +...++++|+++...+.++++++|||.|+|.+|++++|+|+.+|+ +|+++ .+++++.++++++|++++ +
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~ 215 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-N 215 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-C
Confidence 999877 666888999998888899999999998889999999999999999 67666 345668889999999888 7
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
+...+ +.+.+.+..++ ++|+++|++|+...+...+++++++ |+++.+|.... ....++... +.++++|.|++.+
T Consensus 216 ~~~~~--~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~ 291 (306)
T cd08258 216 GGEED--LAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGP-LAASIDVERIIQKELSVIGSRSS 291 (306)
T ss_pred CCcCC--HHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCC-CCcccCHHHHhhcCcEEEEEecC
Confidence 76554 77778777765 8999999998767888999999997 99999998652 223333222 3489999998864
Q ss_pred CCCCCCChHHHHHHHHcC
Q 016933 325 NYKPRTDLPSVVDMYMNK 342 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (380)
. ++++++++++++.|
T Consensus 292 ~---~~~~~~~~~~~~~~ 306 (306)
T cd08258 292 T---PASWETALRLLASG 306 (306)
T ss_pred c---hHhHHHHHHHHhcC
Confidence 4 45799999988764
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=279.78 Aligned_cols=330 Identities=27% Similarity=0.355 Sum_probs=265.7
Q ss_pred hhhhhhccCC--CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAG--KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++...+ +.+++++.+.|.++++|++|++.++++|++|+....|..+ ....|.++|||++|+|+++|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899988664 3388888888888999999999999999999998877543 234678899999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.....|+.+.+ .+|...... |. ...|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~------~~~~~~~~~---~~-------------------~~~g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPP------TAEDEASAL---GG-------------------PIDGVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEecccccccccc------ccccccccc---cc-------------------ccCceeeeEEEecHHHeEECCCC
Confidence 999999877666655443 333221111 11 11368999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++.+++.+++.+.+||+++.+.+.+++|++++|+|+|.+|++++++|++.|+ +|++++.++++.+.++++|++.+++.
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 211 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINY 211 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcC
Confidence 99999999999999999998777889999999999889999999999999999 79999899999999999999998887
Q ss_pred CC-CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 248 SE-HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~-~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
+. .+ +.+.+++.+++ ++|+++|+++. ..+..++++++++ |+++.+|..............+.+++++.++..+.
T Consensus 212 ~~~~~--~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (336)
T cd08276 212 RTTPD--WGEEVLKLTGGRGVDHVVEVGGP-GTLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS 287 (336)
T ss_pred CcccC--HHHHHHHHcCCCCCcEEEECCCh-HHHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc
Confidence 65 33 77778888776 89999999986 6788999999997 99999987543211111122245788888876543
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...+.++++++.++.+.+. .++.+++++++++++.+.+++. +|+++++
T Consensus 288 ---~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 288 ---RAQFEAMNRAIEAHRIRPV--IDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred ---HHHHHHHHHHHHcCCcccc--cCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 3468888888888866543 5688999999999999988776 5888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=279.97 Aligned_cols=312 Identities=20% Similarity=0.231 Sum_probs=253.8
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|||+++.+++.+ +++.+.+.|.+.++||+|++.++++|++|+....|..+ ....|.++|||++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 688888776653 66777777778999999999999999999988877543 2355788999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
+++||+|++... ...|+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~-----------------------------------------------~~~g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG-----------------------------------------------RAGGGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC-----------------------------------------------CCCceeeEEEEEchHHeEeCC
Confidence 999999985420 013589999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
+++++++++.+++.+.||| ++.....++++++++|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++.+
T Consensus 114 ~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA 191 (324)
T ss_pred CCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence 9999999999999999995 4577888999999999996 9999999999999999 89999999999999999999888
Q ss_pred ecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEeee
Q 016933 245 VNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKGTF 322 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~ 322 (380)
++.++.+ +.+.+.+..++ ++|+++|++|+ .....++++++++ |+++.+|...... ..++. ..+.++.++.++.
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (324)
T cd08244 192 VDYTRPD--WPDQVREALGGGGVTVVLDGVGG-AIGRAALALLAPG-GRFLTYGWASGEW-TALDEDDARRRGVTVVGLL 266 (324)
T ss_pred EecCCcc--HHHHHHHHcCCCCceEEEECCCh-HhHHHHHHHhccC-cEEEEEecCCCCC-CccCHHHHhhCCcEEEEee
Confidence 8876654 77778777776 89999999998 4668999999997 9999998764332 23221 2244777887766
Q ss_pred ecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 323 FGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 323 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...... .+.+.+.++++.++++.. .+++.|+++++.+|++.+++++. +|+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 267 GVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 433211 134677888888887653 36788999999999999988776 5998864
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=262.17 Aligned_cols=293 Identities=18% Similarity=0.277 Sum_probs=239.1
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccc----cEEEEEeCCCCCCCCCCCEEEec
Q 016933 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEA----AGVVESVGEGVSDLEVGDHVLPV 95 (380)
Q Consensus 23 ~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~----vG~V~~vG~~v~~~~~GdrV~~~ 95 (380)
|+++++++|+|++||||||+.|.+++|- ++|++. ..-.|+-+|... +|+|++ |..+.|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~--S~~~~f~~GD~V~~~ 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVA--SNHPGFQPGDIVVGV 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEe--cCCCCCCCCCEEEec
Confidence 9999999999999999999999999883 333332 222455566555 445555 567889999999843
Q ss_pred CccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc--cch
Q 016933 96 FTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL--DKV 173 (380)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~--~~a 173 (380)
.+|++|.+++.+.+.+++++.-+ ...
T Consensus 101 ----------------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~L 128 (340)
T COG2130 101 ----------------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYL 128 (340)
T ss_pred ----------------------------------------------------ccceEEEeechhhceecCCCCCCcchHH
Confidence 27999999999999999865422 222
Q ss_pred hhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCC
Q 016933 174 CILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHD 251 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~ 251 (380)
..|..+..|||.+|++.+++++|++|+|.+| |++|..+.|+||..|+ +|+++..+++|.+++++ +|+|.++||+..+
T Consensus 129 gvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d 207 (340)
T COG2130 129 GVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAED 207 (340)
T ss_pred hhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCccc
Confidence 3366688999999999999999999999987 9999999999999999 99999999999999999 9999999999987
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCcee------eccccccccccEEEeeee-c
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF------MTKPINVLNERTLKGTFF-G 324 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~------~~~~~~~~~~~~i~g~~~-~ 324 (380)
+.+++++..+.++|+.||++|+ +.++..+..|+.. +|+.++|..+.-... ...+..+.+.+++.|+.. .
T Consensus 208 --~~~~L~~a~P~GIDvyfeNVGg-~v~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~ 283 (340)
T COG2130 208 --FAQALKEACPKGIDVYFENVGG-EVLDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVAS 283 (340)
T ss_pred --HHHHHHHHCCCCeEEEEEcCCc-hHHHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEech
Confidence 9999999999999999999999 8999999999996 999999976432111 111222337889999876 3
Q ss_pred CCCCC--CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 325 NYKPR--TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 325 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
.+..+ +..+++..|+++|+++.++ +-.-+|+++++||..|.++++ +|.|+++.+
T Consensus 284 ~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 284 DYDQRFPEALRELGGWVKEGKIQYRE--TIVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred hhhhhhHHHHHHHHHHHHcCceeeEe--eehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 33222 4578899999999998875 445589999999999999999 699999864
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=282.43 Aligned_cols=311 Identities=24% Similarity=0.315 Sum_probs=252.5
Q ss_pred hhhhhhhccCCC----CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCC
Q 016933 10 TCKAAVAWEAGK----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 10 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
+|||+++.+++. ++++++++.|.|.++||+||+.++++|++|+....|... ...+|.++|+|++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999987766 388999999999999999999999999999998877554 246788999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
.|++||+|++.. .|+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence 999999998531 258999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
|+. +.+++.+++++.+||+++.+...++++++++|+|+ |.+|++++++|+..|+ +|+++.+++++.+.++++|++.
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 187 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDR 187 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCce
Confidence 997 35677889999999999877788999999999996 9999999999999999 7888889999999999999988
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc---------eeecccccccc
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA---------VFMTKPINVLN 314 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---------~~~~~~~~~~~ 314 (380)
+++.+..+ +.+.+....++++|++||++|+ ..+..++++++++ |+++.+|...... ...+....+.+
T Consensus 188 v~~~~~~~--~~~~~~~~~~~~vd~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (329)
T cd08250 188 PINYKTED--LGEVLKKEYPKGVDVVYESVGG-EMFDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPPKLLAK 263 (329)
T ss_pred EEeCCCcc--HHHHHHHhcCCCCeEEEECCcH-HHHHHHHHHhccC-CeEEEEecccCCcccCcccccccccccHHHhhc
Confidence 88766544 6666666555589999999997 7889999999997 9999998764221 01112222447
Q ss_pred ccEEEeeeecCCC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 315 ERTLKGTFFGNYK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 315 ~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
+.++.++...... ..+.+.++++++.++.+.+.....+.++++++++|++.+.+++. +|++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 264 SASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred CceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 7788877543211 12346778888889877653334566899999999999988766 588874
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=280.39 Aligned_cols=315 Identities=19% Similarity=0.276 Sum_probs=254.0
Q ss_pred hhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
||||+++.+++.+ +++++.+.|++.++||+|||.++++|+.|+....+..+ ....|.++|+|++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 6999999887763 67778888889999999999999999999888877543 23456789999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|+... ..|+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~-------------------------------------------------~~g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALL-------------------------------------------------PGGGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEec-------------------------------------------------CCCceeeEEEecHHHcEeCCC
Confidence 9999998431 125899999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
++++.+++.+++++.+||+++...+.+++|++|||+|+ |.+|++++++|+.+|+ +++.+.+++++.+.++++|++.++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILI 190 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence 99999999999999999999877788999999999996 9999999999999999 667788999999999999998888
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 323 (380)
+....+ .+.+.+.+.+++ ++|++||++|+ ..+..++++++++ |+++.+|...+.....+....+ .++.++.++..
T Consensus 191 ~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (334)
T PTZ00354 191 RYPDEE-GFAPKVKKLTGEKGVNLVLDCVGG-SYLSETAEVLAVD-GKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTL 267 (334)
T ss_pred ecCChh-HHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhccC-CeEEEEecCCCCcccccCHHHHHhhCCEEEeeec
Confidence 775432 266677777765 89999999987 7888999999997 9999998654222111222222 35567777654
Q ss_pred cCCCCC-------CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 324 GNYKPR-------TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 324 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
...... +.+++++++++++.+.. .+.+.+++++++++++.+.+++. +|+++++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~ 329 (334)
T PTZ00354 268 RSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN 329 (334)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence 332111 12466778888887654 36788999999999999988766 69999775
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=281.49 Aligned_cols=302 Identities=28% Similarity=0.428 Sum_probs=229.2
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCC----CCCccccccccEEE---EEeC-CCCCCCCCCCEEEe
Q 016933 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP----LFPRIFGHEAAGVV---ESVG-EGVSDLEVGDHVLP 94 (380)
Q Consensus 23 ~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~----~~p~v~G~e~vG~V---~~vG-~~v~~~~~GdrV~~ 94 (380)
...++.++|.|.+++++|++.++++|+.|+.+..|..... .+|.+++.++.|++ ...| ..+..+..||++..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 5567899999999999999999999999999999876543 47766666655553 3333 22334555555542
Q ss_pred cCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchh
Q 016933 95 VFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVC 174 (380)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa 174 (380)
. ...|+|+||+++|...++++|+++++.+||
T Consensus 100 ~-------------------------------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 F-------------------------------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred c-------------------------------------------------cCCCceeeEEEcchhhccCCCCccChhhhh
Confidence 2 123699999999999999999999999999
Q ss_pred hcchhhhhhhhhhhhcc------CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 175 ILSCGVSTGLGATLNVA------KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~------~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++++.|||.++.+.. ++++|++|||+|+ |++|++++|+|+..|+ ..+++.+++++.++++++|+++++||
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence 99999999999999999 8999999999986 9999999999999996 44555599999999999999999999
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC-ceeeccccc-ccc-----ccEEEe
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD-AVFMTKPIN-VLN-----ERTLKG 320 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~-~~~-----~~~i~g 320 (380)
++.+ +.+.++..+.++||+||||+|+ ..+.....++... |+...++...+. ......... ..+ ...+.+
T Consensus 210 ~~~~--~~e~~kk~~~~~~DvVlD~vg~-~~~~~~~~~l~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (347)
T KOG1198|consen 210 KDEN--VVELIKKYTGKGVDVVLDCVGG-STLTKSLSCLLKG-GGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKG 285 (347)
T ss_pred CCHH--HHHHHHhhcCCCccEEEECCCC-CccccchhhhccC-CceEEEEeccccccccccccchhhhhhhhheeeeeec
Confidence 9966 8899999885599999999999 4777888888886 765555443211 111111000 011 111111
Q ss_pred eee---cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 321 TFF---GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 321 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
..+ ......+.+..+.++++.+++ .+.+.+.||++++.+||+.+.+++. +|+++.+.+
T Consensus 286 ~~~~~~~~~~~~~~l~~l~~~ie~gki--kp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~~ 347 (347)
T KOG1198|consen 286 VNYRWLYFVPSAEYLKALVELIEKGKI--KPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKDV 347 (347)
T ss_pred cceeeeeecCCHHHHHHHHHHHHcCcc--cCCcceeeeHHHHHHHHHHHhhcCCcceEEEEecC
Confidence 111 111233568889999999955 4558999999999999999988666 799998753
|
|
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=281.59 Aligned_cols=315 Identities=23% Similarity=0.309 Sum_probs=247.0
Q ss_pred hhhhhhccCC-CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++..++ ..+++++++.|.|+++||+||+.++++|++|+....+.. ....|.++|||++|+|+.+|++++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 6899998874 338899999999999999999999999999998775533 22357789999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|+|+......|+ + ..+.|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~-------------------~~~~g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------N-------------------DPRNGAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------C-------------------CCCCCcccceEEechhheEECCCCCC
Confidence 999976432211 0 11236899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCC----------CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKP----------ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+++++.+++.+.+||+++.+...+ ++++++||+|+ |.+|++++++|+.+|+ +|+++. ++++.+.+++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~ 196 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS 196 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence 999999999999999997665544 78999999997 9999999999999999 787776 5688999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhc--CCcEEEEEcCCCCCceeecccccccccc
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD--GWGVAVLVGVPSKDAVFMTKPINVLNER 316 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 316 (380)
+|+++++++++.+ +.+.+++++++++|+++|++|++..+..+++++++ + |+++.+|......... . .....
T Consensus 197 ~g~~~v~~~~~~~--~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~~~~---~-~~~~~ 269 (339)
T cd08249 197 LGADAVFDYHDPD--VVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEETEPR---K-GVKVK 269 (339)
T ss_pred cCCCEEEECCCch--HHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccccCC---C-CceEE
Confidence 9999999887654 77778777767899999999986788999999999 8 9999998765322000 0 00111
Q ss_pred EEEeeeecC---C---CCCCChHHHHHHHHcCCCCCCCceeeeec--cccHHHHHHHHHcCC-c-eeEEEec
Q 016933 317 TLKGTFFGN---Y---KPRTDLPSVVDMYMNKQLELEKFITHRIP--FSEINKAFEYMVKGE-G-LRCIISM 378 (380)
Q Consensus 317 ~i~g~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~a~~~l~~~~-~-~Kvvi~~ 378 (380)
.+....... . .....+.+++++++++++.+.+ ...++ ++++++|++.+..++ . +|+|+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 270 FVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHP--VRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred EEEeeeecccccccccchHHHHHHHHHHHHcCCccCCC--ceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 111111110 0 1112466788889999877653 34556 999999999999888 6 6999875
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=276.35 Aligned_cols=312 Identities=19% Similarity=0.241 Sum_probs=241.7
Q ss_pred hhhhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++..+++ ++++++.++|.|+++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 78999988886 5999999999999999999999999999999988776432 345789999999999999 457899
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.... . |. ...|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~---------------------~---g~-------------------~~~g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGYD---------------------L---GM-------------------NTDGGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEcccc---------------------c---CC-------------------CCCceeEEEEEEchhhEEECCCC
Confidence 99999864200 0 11 01368999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhcc--CCC-CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGATLNVA--KPE-RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~--~~~-~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+++++++.+++.+.++|.++.... ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|+++
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE 194 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence 999999999999999999875443 335 4579999998 9999999999999999 7999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~ 322 (380)
+++.++. .....+....+++|+++|++|+ ..+..++++++++ |+++.+|....... ......+ .+++++.+..
T Consensus 195 ~~~~~~~---~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 268 (325)
T cd05280 195 VLDREDL---LDESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYG-GVVASCGNAAGPEL-TTTVLPFILRGVSLLGID 268 (325)
T ss_pred EEcchhH---HHHHHHHhcCCCccEEEECCch-HHHHHHHHhhcCC-CEEEEEecCCCCcc-ccccchheeeeeEEEEEE
Confidence 8876542 1122222333479999999998 6889999999997 99999987643221 2233333 4788888876
Q ss_pred ecCCCCCCCh----HHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 323 FGNYKPRTDL----PSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 323 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...... +.. +.+.+++..+. .+.+...|++++++++++.+.+++. +|+|+++
T Consensus 269 ~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 269 SVNCPM-ELRKQVWQKLATEWKPDL---LEIVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred eecCch-hHHHHHHHHHHHHHhcCC---ccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 543211 122 33333444442 2236789999999999999988877 6998864
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=272.17 Aligned_cols=297 Identities=25% Similarity=0.313 Sum_probs=239.7
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++.+.+ | +++++.++|.++++||+||+.++++|+.|..+... ...|.++|||++|+|+++|+++..|++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~----~~~~~~~g~e~~G~v~~~G~~v~~~~~ 75 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAE----RPDGAVPGWDAAGVVERAAADGSGPAV 75 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhcc----CCCCCcccceeEEEEEEeCCCCCCCCC
Confidence 5788887654 4 77778889999999999999999999999887652 223678999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|+... ..|+|++|+.++.+.++++|+++
T Consensus 76 Gd~V~~~~-------------------------------------------------~~g~~~~~~~v~~~~~~~ip~~~ 106 (305)
T cd08270 76 GARVVGLG-------------------------------------------------AMGAWAELVAVPTGWLAVLPDGV 106 (305)
T ss_pred CCEEEEec-------------------------------------------------CCcceeeEEEEchHHeEECCCCC
Confidence 99998531 12589999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++++++++.+.+||+++.+.... +|++++|+|+ |.+|++++++|+..|+ +|+.+++++++.+.++++|++.+++.
T Consensus 107 ~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 184 (305)
T cd08270 107 SFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVG 184 (305)
T ss_pred CHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence 9999999999999999997655544 5999999998 9999999999999999 89999899999999999998766543
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc---cccEEEeeeec
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL---NERTLKGTFFG 324 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~---~~~~i~g~~~~ 324 (380)
.. ++.++++|+++|++|+ ..+..++++++.+ |+++.+|... ..........+. ++.++.++.+.
T Consensus 185 ~~----------~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (305)
T cd08270 185 GS----------ELSGAPVDLVVDSVGG-PQLARALELLAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFLY 251 (305)
T ss_pred cc----------cccCCCceEEEECCCc-HHHHHHHHHhcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEcc
Confidence 22 1122479999999998 5789999999997 9999998764 222222222222 47788877654
Q ss_pred C-CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 N-YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. ....+.+..++++++++++.+. +.+.++++++++|++.+.+++. +|+|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 252 DGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred CHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 2 1112357888899999988754 6788999999999999988776 6999864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=272.05 Aligned_cols=298 Identities=21% Similarity=0.323 Sum_probs=247.5
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCC
Q 016933 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECG 101 (380)
Q Consensus 23 ~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~ 101 (380)
+++++.+.|.+.+++|+||+.++++|+.|..++.+... ...+|.++|||++|+|+.+|++++.+++||+|++.+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 66778888889999999999999999999988876543 2346789999999999999999999999999985420
Q ss_pred CCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhh
Q 016933 102 DCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVS 181 (380)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ 181 (380)
.|+|++|+.++...++++|+++++.+++.+++.+.
T Consensus 90 ---------------------------------------------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 ---------------------------------------------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred ---------------------------------------------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 15899999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHH
Q 016933 182 TGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 182 ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~ 260 (380)
+||+++.....+.+|++|||+|+ |.+|++++++|+++|+ +++++.+++++.+.++++|++.++++++.+ +.+.+.+
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~ 201 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSPED--LAQRVKE 201 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccchh--HHHHHHH
Confidence 99999877778899999999987 9999999999999999 788888999999999999999999876644 7777888
Q ss_pred HhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-cccEEEeeeecCCCC-------CCC
Q 016933 261 MTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFGNYKP-------RTD 331 (380)
Q Consensus 261 ~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~-------~~~ 331 (380)
.+++ ++|+++|++|+ ......+++++++ |+++.+|..... ...+....+. ++.++.+.....+.. .+.
T Consensus 202 ~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (323)
T cd05282 202 ATGGAGARLALDAVGG-ESATRLARSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQET 278 (323)
T ss_pred HhcCCCceEEEECCCC-HHHHHHHHhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHH
Confidence 8776 89999999998 5567889999997 999999876533 2233333344 788888876554321 124
Q ss_pred hHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 332 LPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
+.++++++.++++.+. .++.|+++++++|++.+.+++. +|++++
T Consensus 279 ~~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 279 FAEVIKLVEAGVLTTP--VGAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHHHhCCCcccC--ccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 7778888889877643 5788999999999999988766 588864
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=267.82 Aligned_cols=301 Identities=25% Similarity=0.353 Sum_probs=240.9
Q ss_pred cCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhh-ccCCCC--CCCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 016933 18 EAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFW-ESKGQT--PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLP 94 (380)
Q Consensus 18 ~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~-~g~~~~--~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~ 94 (380)
+.++ ++++++++|++.++||+||+.++++|++|+..+ .+.... ...|.++|+|++|+|+++|++++.+++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 4444 999999999999999999999999999999887 554321 224789999999999999999999999999985
Q ss_pred cCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchh
Q 016933 95 VFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVC 174 (380)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa 174 (380)
.. .|+|++|+.++.+.++++|+++ ..++
T Consensus 82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~ 109 (312)
T cd08269 82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA 109 (312)
T ss_pred ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence 41 2589999999999999999998 2333
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccH
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPI 254 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~ 254 (380)
.+..+++++++++. .+.+++++++||+|+|.+|++++++|+.+|+++|+++.+++++.++++++|++.+++.+..+ +
T Consensus 110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~ 186 (312)
T cd08269 110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEA--I 186 (312)
T ss_pred HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcC--H
Confidence 22367889998864 78899999999998899999999999999994499998999999999999998888765544 7
Q ss_pred HHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCC-CCCCC
Q 016933 255 QEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNY-KPRTD 331 (380)
Q Consensus 255 ~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~-~~~~~ 331 (380)
.+.+.+++++ ++|+++|++|.......++++++++ |+++.+|... .....+... ...+++.+.++..... ...+.
T Consensus 187 ~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (312)
T cd08269 187 VERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGLEG 264 (312)
T ss_pred HHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchhhH
Confidence 7888887776 8999999998867889999999997 9999998654 222222221 2336666666543221 11246
Q ss_pred hHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEE
Q 016933 332 LPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCII 376 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi 376 (380)
+++++++++++++.+...+.+.|+++++++|++.+.+++. +|+++
T Consensus 265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 265 MREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 8889999999987754446788999999999999988865 68876
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=271.98 Aligned_cols=311 Identities=24% Similarity=0.378 Sum_probs=247.0
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
||++++.+.+.+ +++.+.+.|.+.++||+||+.++++|+.|+....+..+....|.++|||++|+|+++|+ ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 577777666543 66777788888999999999999999999998887655556688999999999999995 57999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|+...... |. ...|+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~~------------------------~~-------------------~~~g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGGM------------------------GR-------------------TFDGSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCCC------------------------CC-------------------CCCcccceEEEcCHHHcEeCCCCC
Confidence 99998652100 00 012589999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++++.+++++.+||+++.+...+++|++|||+|+ |.+|++++|+|+.+|+ +|+++.+++++.+.++++|++++++.
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 194 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID 194 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec
Confidence 999999999999999999877788999999999997 9999999999999999 79999899999999999999888754
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceee----ccccccccccEEEeeee
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM----TKPINVLNERTLKGTFF 323 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~----~~~~~~~~~~~i~g~~~ 323 (380)
..+ +.+.+.+. ++++|+++|++|+ ..+..++++++++ |+++.+|......... .....+.+++++.++..
T Consensus 195 -~~~--~~~~i~~~-~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (320)
T cd08243 195 -DGA--IAEQLRAA-PGGFDKVLELVGT-ATLKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSS 268 (320)
T ss_pred -Ccc--HHHHHHHh-CCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecch
Confidence 322 66777777 5589999999998 7889999999997 9999999753221111 11111235666666543
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
... ....+.+++++++++.+.+. .++.++++++++|++.+.+++. +|+++
T Consensus 269 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 269 GDV-PQTPLQELFDFVAAGHLDIP--PSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred hhh-hHHHHHHHHHHHHCCceecc--cccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 221 12347788889999977543 5678999999999999988776 58775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=270.25 Aligned_cols=312 Identities=19% Similarity=0.196 Sum_probs=249.1
Q ss_pred hhhhhhccCCCC-----eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC
Q 016933 11 CKAAVAWEAGKP-----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 11 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|||+++++++.+ ++.++++.|.+.+++|+|++.++++|+.|+..+.+..+....|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 578888887764 566677888889999999999999999999887775544456778999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||+|+.... . ...|+|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~------------------~~~g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGD----------------------------I------------------TRPGSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCC----------------------------C------------------CCCccceEEEEEchHHeeeCC
Confidence 999999985410 0 012589999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCC-----CCeEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPER-----GSSVAVFGL-GAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~vlI~G~-g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~ 238 (380)
+++++++++.+++.+.+||+++.+.+.+++ |++|+|+|+ |.+|++++++|+.+| + +|+++++++++.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE 193 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence 999999999999999999999877788877 999999986 999999999999999 7 89999999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccE
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERT 317 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~ 317 (380)
+|++++++.++ + +.+.++....+++|+++|++|....+..++++++++ |+++.+|... . ..+...+ .++.+
T Consensus 194 ~g~~~~~~~~~-~--~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~--~--~~~~~~~~~~~~~ 265 (336)
T cd08252 194 LGADHVINHHQ-D--LAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ--E--PLDLGPLKSKSAS 265 (336)
T ss_pred cCCcEEEeCCc-c--HHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC--C--cccchhhhcccce
Confidence 99999988764 2 656666543348999999999767889999999997 9999998652 1 2222233 46777
Q ss_pred EEeeeecCCC--C-------CCChHHHHHHHHcCCCCCCCc-eeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 318 LKGTFFGNYK--P-------RTDLPSVVDMYMNKQLELEKF-ITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 318 i~g~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
+.+..+.... . ...+.++++++.++.+.+... ..+.++++++++|++.+.+++. +|++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 266 FHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred EEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 7765543211 1 123677889999997764321 1245799999999999988876 588764
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=269.67 Aligned_cols=314 Identities=19% Similarity=0.208 Sum_probs=239.0
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-CCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-QTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+.+.+ +++++.+.|.|.++||+||+.++++|++|.....+.+ ....+|.++|||++|+|+++| +.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999877764 7889999999999999999999999999987654322 123458899999999999964 57799
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+..... .|. ...|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGV-------------------SHHGGYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCC-------------------CCCCcceeEEEEcHHHeEECCCC
Confidence 99999865310 011 01368999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhc--cC-CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGATLNV--AK-PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~--~~-~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+++++++.+++.+.|||.++... .. ...+++|||+|+ |.+|++++|+|+.+|+ +|+++++++++.+.++++|++.
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE 194 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence 99999999999999999886432 23 345789999998 9999999999999999 8999999999999999999988
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~ 322 (380)
+++.++. ..+.+++..++++|+++|++|+ ..+..++++++++ |+++.+|.... ...+.....+ .+++++.+..
T Consensus 195 v~~~~~~---~~~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (326)
T cd08289 195 VIPREEL---QEESIKPLEKQRWAGAVDPVGG-KTLAYLLSTLQYG-GSVAVSGLTGG-GEVETTVFPFILRGVNLLGID 268 (326)
T ss_pred EEcchhH---HHHHHHhhccCCcCEEEECCcH-HHHHHHHHHhhcC-CEEEEEeecCC-CCCCcchhhhhhccceEEEEE
Confidence 8886543 2344555544489999999998 7889999999997 99999997642 2222222223 5788888875
Q ss_pred ecCCCCCCChHHHHHHHHcCCCC---CCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLE---LEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..... .....++++.+.. .+. ....+.+.|+++++.+||+.+.+++. +|+++++
T Consensus 269 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 269 SVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred eEecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 32210 1123334443332 222 22235789999999999999988877 5998864
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=266.87 Aligned_cols=310 Identities=20% Similarity=0.245 Sum_probs=239.4
Q ss_pred hhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCC
Q 016933 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 12 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
||+++...+.| ++++++|+|.+.++||+||+.++++|++|+....|.... ...|.++|||++|+|+. +++..|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 56777666664 689999999999999999999999999999888775432 34588999999999988 55678999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|++..... |. ...|+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~~------------------------~~-------------------~~~g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYGL------------------------GV-------------------SHDGGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCCC------------------------CC-------------------CCCccceEEEEEchhheEECCCCC
Confidence 99998652100 10 013589999999999999999999
Q ss_pred Cccchhhcchhhhhhhhhhhh--ccCCCCCC-eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 169 PLDKVCILSCGVSTGLGATLN--VAKPERGS-SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~-~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
++++++.+++.+.+|+.++.. .+.+.+++ +|+|+|+ |.+|++++++|+++|+ +++++..++++.+.++++|++.+
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~ 194 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEV 194 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEE
Confidence 999999999999999887643 34488898 9999997 9999999999999999 78877788888899999999888
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeee
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFF 323 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~ 323 (380)
++.++.+ ..++.+..+++|+++|++|+ ..+..++++++++ |+++.+|.... .........+ .++.++.+...
T Consensus 195 ~~~~~~~----~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 267 (323)
T TIGR02823 195 IDREDLS----PPGKPLEKERWAGAVDTVGG-HTLANVLAQLKYG-GAVAACGLAGG-PDLPTTVLPFILRGVSLLGIDS 267 (323)
T ss_pred EccccHH----HHHHHhcCCCceEEEECccH-HHHHHHHHHhCCC-CEEEEEcccCC-CCccccHHHHhhcceEEEEEec
Confidence 8765432 24455555579999999998 5788999999997 99999997642 2222222223 57888887654
Q ss_pred cCCCCCC----ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 324 GNYKPRT----DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 324 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
... ..+ .+..+.+++..+.+.. +.+.|+++++++||+.+.+++. +|+++++
T Consensus 268 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 268 VYC-PMALREAAWQRLATDLKPRNLES---ITREITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred ccc-CchhHHHHHHHHHHHhhcCCCcC---ceeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence 321 112 2344555666665532 2568999999999999998877 5998863
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=272.49 Aligned_cols=311 Identities=23% Similarity=0.334 Sum_probs=239.5
Q ss_pred hhhhhhccCCCC---eEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCC---------------CCCCCcccccc
Q 016933 11 CKAAVAWEAGKP---LIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQ---------------TPLFPRIFGHE 71 (380)
Q Consensus 11 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~---------------~~~~p~v~G~e 71 (380)
|||+++++++++ ++++++++|.| +++||+||++++++|++|+....|... ....|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 788888888876 89999999999 499999999999999999998876421 23568899999
Q ss_pred ccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCccee
Q 016933 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFS 151 (380)
Q Consensus 72 ~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a 151 (380)
++|+|+++|+++++|++||||++.+.. +..|+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence 999999999999999999999864211 1136899
Q ss_pred eEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCC----CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE
Q 016933 152 EYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPE----RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV 226 (380)
Q Consensus 152 ~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~----~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~ 226 (380)
+|+.++.+.++++|++++++.++.+++.+.+||+++.+.+.+. +|++++|+|+ |.+|++++++|+.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999977767665 4999999996 9999999999999999 78777
Q ss_pred cCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce--
Q 016933 227 DRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV-- 304 (380)
Q Consensus 227 ~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-- 304 (380)
.++ ++.+.++++|++.+++..+.+ +.+.+... +++|++||++|+ .....++++++++ |+++.+|.......
T Consensus 194 ~~~-~~~~~~~~~g~~~~~~~~~~~--~~~~l~~~--~~vd~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~ 266 (350)
T cd08248 194 CST-DAIPLVKSLGADDVIDYNNED--FEEELTER--GKFDVILDTVGG-DTEKWALKLLKKG-GTYVTLVSPLLKNTDK 266 (350)
T ss_pred eCc-chHHHHHHhCCceEEECCChh--HHHHHHhc--CCCCEEEECCCh-HHHHHHHHHhccC-CEEEEecCCccccccc
Confidence 654 678888999998888876543 54544432 479999999998 4888999999997 99999986532111
Q ss_pred eec--c----ccccc-cccE-E-Eee---eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-
Q 016933 305 FMT--K----PINVL-NERT-L-KGT---FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG- 371 (380)
Q Consensus 305 ~~~--~----~~~~~-~~~~-i-~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~- 371 (380)
... . ...+. ..+. + ... +.........+.++++++.++.+.+ .+++.|+++++.++++.+.+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~ 344 (350)
T cd08248 267 LGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKP--VIDKVFPFEEVPEAYEKVESGHAR 344 (350)
T ss_pred ccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEec--ccceeecHHHHHHHHHHHhcCCCc
Confidence 011 0 00111 0000 0 000 0000112245888999999997653 36788999999999999988776
Q ss_pred eeEEEe
Q 016933 372 LRCIIS 377 (380)
Q Consensus 372 ~Kvvi~ 377 (380)
.|++++
T Consensus 345 ~~vv~~ 350 (350)
T cd08248 345 GKTVIK 350 (350)
T ss_pred eEEEeC
Confidence 588763
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=262.18 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=242.8
Q ss_pred hhhhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.++|. .+++++.+.|+|+++||+||+.++++|++|.....|... ...+|.++|||++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999988775 388999999999999999999999999999988777542 234578899999999999 6778899
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++.... . | ....|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~--------------~----------~-------------------~~~~g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG--------------V----------G-------------------ERHWGGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc--------------C----------C-------------------CCCCCcceeEEEEchHHeeeCCCC
Confidence 99999864100 0 0 001358999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhh--hccCCC-CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGATL--NVAKPE-RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~-~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+++++++.+++.+.+++.++. +..... +++++||+|+ |.+|++++|+|+.+|+ +|+++..++++.++++++|+++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 194 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE 194 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence 999999999999999987743 123444 6789999997 9999999999999999 7888889999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~ 322 (380)
++++++. ...++.+..+++|.++|++++ ..+...+..++.+ |+++.+|.... .........+ .++.++.+..
T Consensus 195 ~~~~~~~----~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~-g~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (324)
T cd08288 195 IIDRAEL----SEPGRPLQKERWAGAVDTVGG-HTLANVLAQTRYG-GAVAACGLAGG-ADLPTTVMPFILRGVTLLGID 267 (324)
T ss_pred EEEcchh----hHhhhhhccCcccEEEECCcH-HHHHHHHHHhcCC-CEEEEEEecCC-CCCCcchhhhhccccEEEEEE
Confidence 9987653 234555555578999999997 5677888899996 99999987532 1112222233 5788888865
Q ss_pred ecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 323 FGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 323 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
...... .+.+..+.+++.++.+.+ +.+.++++++++|++.+.+++. +|+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 268 SVMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred eecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 432221 123555666777776643 3689999999999999988877 5998864
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal |
| >cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=265.48 Aligned_cols=317 Identities=20% Similarity=0.275 Sum_probs=235.7
Q ss_pred hhhhhccCCCCeEEEEeecCCC---CCCeEEEEEeeeecCcccchhhccCCCCCC-CCccccccccEEEEEeCCCCC-CC
Q 016933 12 KAAVAWEAGKPLIIQDVEVAPP---QAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGHEAAGVVESVGEGVS-DL 86 (380)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~p~~---~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~-~p~v~G~e~vG~V~~vG~~v~-~~ 86 (380)
|++++.+.++++++++++.|.| +++||+||+.++++|++|+....+...... .|.++|+|++|+|+++|++++ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6888888888888888888776 899999999999999999887654222222 377899999999999999998 89
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc----ceE
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG----CVA 162 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~----~~~ 162 (380)
++||+|++.....| .+.|+|++|+.++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~--------------------------------------------~~~g~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPY--------------------------------------------GGQGTLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCC--------------------------------------------CCCceeeEEEEEccccccceeE
Confidence 99999986532111 013689999999987 799
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhcc-CCCCCCeEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhc
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVA-KPERGSSVAVFGL-GAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKF 239 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vlI~G~-g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~l 239 (380)
++|+++++++++.+++.+.|||+++.+.. .+++|++++|+|+ |.+|++++++|+.+|. ++++++. ++++.+.++++
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~ 196 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKL 196 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHh
Confidence 99999999999999999999999976666 7999999999998 8999999999998854 3677774 45556688899
Q ss_pred CCceEecCCCCCc--cHHHHHHHHh-CCCccEEEEcccChhhHHHHHHHhh---cCCcEEEEEcCCCCCcee--e-----
Q 016933 240 GVTDFVNTSEHDR--PIQEVIAEMT-NGGVDRSVECTGNIDNMISAFECVH---DGWGVAVLVGVPSKDAVF--M----- 306 (380)
Q Consensus 240 G~~~vi~~~~~~~--~~~~~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~--~----- 306 (380)
|++.+++.++.+. .+.+.++..+ ++++|++||++|+......++++++ ++ |+++.++........ .
T Consensus 197 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~ 275 (352)
T cd08247 197 GADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWD 275 (352)
T ss_pred CCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhcc
Confidence 9999888765431 1333334444 3489999999998667888999999 97 999976432211100 0
Q ss_pred ---cccccccccc-----EEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 307 ---TKPINVLNER-----TLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 307 ---~~~~~~~~~~-----~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
.....+.+.. .+..... ....+.+.++++++.++.+.+ .+++.++++++++|++.+.+++. +|++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 351 (352)
T cd08247 276 NPSANARKLFGSLGLWSYNYQFFLL--DPNADWIEKCAELIADGKVKP--PIDSVYPFEDYKEAFERLKSNRAKGKVVIK 351 (352)
T ss_pred ccchhhhhhhhhhcCCCcceEEEEe--cCCHHHHHHHHHHHhCCCeEe--eeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence 0001111121 2221110 011134677888998987653 36788999999999999988776 699886
Q ss_pred c
Q 016933 378 M 378 (380)
Q Consensus 378 ~ 378 (380)
+
T Consensus 352 ~ 352 (352)
T cd08247 352 V 352 (352)
T ss_pred C
Confidence 4
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=264.56 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=239.9
Q ss_pred hhhhhhccCCC------CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC---CCCCccccccccEEEEEeCC
Q 016933 11 CKAAVAWEAGK------PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT---PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 11 ~~a~~~~~~~~------~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~---~~~p~v~G~e~vG~V~~vG~ 81 (380)
.|||++.+.++ .+++++++.|++.+++|+||+.++++|+.|.....+.... ...+.++|+|++|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 35666644332 2889999999999999999999999999887655543211 12356789999999999996
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec-cc
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS-GC 160 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~-~~ 160 (380)
+ +|++||||+.. ++|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence 4 79999999843 37999999999 99
Q ss_pred eEeCCCCCC--ccchhh-cchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH
Q 016933 161 VAKINPLAP--LDKVCI-LSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236 (380)
Q Consensus 161 ~~~~p~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~ 236 (380)
++++|++++ +.++++ +++++.+||+++.+...+.++++|||+|+ |.+|++++|+|+..|+ +|+++++++++.+.+
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~ 186 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL 186 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 999999985 445555 88899999999877788999999999996 9999999999999999 899998999999999
Q ss_pred Hh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceee-----cccc
Q 016933 237 KK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM-----TKPI 310 (380)
Q Consensus 237 ~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-----~~~~ 310 (380)
++ +|++.++++++.+ +.+.+.+..++++|++||++|+ ..+..++++++++ |+++.+|......... ....
T Consensus 187 ~~~~g~~~~~~~~~~~--~~~~v~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~ 262 (329)
T cd05288 187 VEELGFDAAINYKTPD--LAEALKEAAPDGIDVYFDNVGG-EILDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLGN 262 (329)
T ss_pred HhhcCCceEEecCChh--HHHHHHHhccCCceEEEEcchH-HHHHHHHHhcCCC-ceEEEEeeccCcccccccccccHHH
Confidence 88 9999998887654 7777777765689999999998 7888999999997 9999998654322111 1122
Q ss_pred ccccccEEEeeeecCCCC--CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 311 NVLNERTLKGTFFGNYKP--RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 311 ~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
.+.++.++.++....... .+.+.++++++.++.+.+.+ ...++++++.++++.+.+++. +|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 263 IITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred HhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHHHHHHHHHHHhcCCCccceeC
Confidence 345778888766433211 13467788899999877653 355899999999999987766 57764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=258.56 Aligned_cols=315 Identities=27% Similarity=0.362 Sum_probs=250.7
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
||++++..++.+ +.+.+.+.|.+.+++|+|++.++++|++|+....|... ....|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 578887766544 77888898999999999999999999999988776543 345788999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+..... .. ...|++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~--------------------------~~------------------~~~g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLG--------------------------WG------------------RRQGTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEeccc--------------------------cC------------------CCCcceeeEEEecHHHcEeCCCC
Confidence 99999865310 00 01358999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+++.+++++.+||+++.....+.+|++++|+|+ |.+|++++++++..|+ +|+++++++++.+.++++|++.+++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 195 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFN 195 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999877788999999999996 9999999999999999 8999989999999999999988887
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
....+ +.+.+.+...+ ++|+++|++|+ ......+++++++ |+++.++...... ...... +.++.++.+...+
T Consensus 196 ~~~~~--~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 269 (325)
T cd08253 196 YRAED--LADRILAATAGQGVDVIIEVLAN-VNLAKDLDVLAPG-GRIVVYGSGGLRG--TIPINPLMAKEASIRGVLLY 269 (325)
T ss_pred CCCcC--HHHHHHHHcCCCceEEEEECCch-HHHHHHHHhhCCC-CEEEEEeecCCcC--CCChhHHHhcCceEEeeehh
Confidence 76554 66777777665 89999999998 5678889999997 9999998754111 222222 3456666665433
Q ss_pred CCCCC---CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPR---TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..... +.+..+.+++.++.+.+ ..++.|++++++++++.+.+++. +|+++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 270 TATPEERAAAAEAIAAGLADGALRP--VIAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 22111 12455566777776543 35688999999999999988766 6988864
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=257.83 Aligned_cols=309 Identities=26% Similarity=0.346 Sum_probs=249.9
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+.+.+ +++++.+.|.+.++||+||+.++++|+.|+....+..+ ....|.++|||++|+|+++|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 688888775554 77778888888999999999999999999988776543 234678999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+.... .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA-------------------------------------------------GGGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC-------------------------------------------------CCceeEEEEcCHHHhccCCCC
Confidence 9999985310 158999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+++.++..+.++|+++.+...+.++++++|+|+ |.+|++++++++..|+ +++++++++++.+.++++|++.+++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAIN 190 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999877788999999999997 9999999999999999 7999989999999999999988887
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 324 (380)
....+ +.+.+.+...+ ++|+++|++|+ ..+...++++.++ |+++.+|...... .......+ .+++++.++...
T Consensus 191 ~~~~~--~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~~~~-g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T cd05276 191 YRTED--FAEEVKEATGGRGVDVILDMVGG-DYLARNLRALAPD-GRLVLIGLLGGAK-AELDLAPLLRKRLTLTGSTLR 265 (323)
T ss_pred CCchh--HHHHHHHHhCCCCeEEEEECCch-HHHHHHHHhhccC-CEEEEEecCCCCC-CCCchHHHHHhCCeEEEeecc
Confidence 76544 66777776665 89999999998 5578899999997 9999998754221 22222223 478888887654
Q ss_pred CCCCC-------CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 325 NYKPR-------TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 325 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
..... +.+.++++++.++++.+ +.++.|++++++++++.+.+++. +|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 266 SRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred chhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 32111 12456778888887654 36788999999999999987765 57763
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=256.55 Aligned_cols=309 Identities=25% Similarity=0.319 Sum_probs=247.2
Q ss_pred hhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 12 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
||+....++.+ +.+.+.+.|.++++||+|++.++++|+.|+....+..+. .+|.++|||++|+|+.+|+++.+|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 35555444443 666777777788999999999999999999888775433 457789999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|+|++.. ..|+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~-------------------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG-------------------------------------------------PPGAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec-------------------------------------------------CCCceeEEEEecHHHceeCCCCCC
Confidence 9998541 025899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
..+++.+++.+.++|+++.+...+++|++|||+|+ |.+|++++++|+.+|+ +|++++.++++.+.++++|++.+++..
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR 189 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence 99999999999999999877888999999999996 9999999999999999 899998999999999999998888766
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeecCC
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFGNY 326 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~ 326 (380)
..+ +.+.++..+.+ ++|+++|++++ .....++++++++ |+++.+|..... ...+....+ .+++++.+......
T Consensus 190 ~~~--~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 264 (320)
T cd05286 190 DED--FVERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHY 264 (320)
T ss_pred chh--HHHHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhh
Confidence 544 77778877766 89999999998 6888999999997 999999875422 112222223 46667665433222
Q ss_pred CCC-----CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 327 KPR-----TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 327 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
... +.+.++++++.++.+.+. .++.|++++++++++.+.+++. +|+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 265 IATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 111 224567888888876643 5678999999999999988776 5888753
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=251.60 Aligned_cols=268 Identities=32% Similarity=0.504 Sum_probs=220.3
Q ss_pred eEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCc
Q 016933 37 EVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCD 115 (380)
Q Consensus 37 eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~ 115 (380)
||+|++.++++|+.|+....+..+ ....|.++|+|++|+|+++|++++.|++||+|+..+...|++|.+|+. .|+
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999887654 345688999999999999999999999999999999999999999997 676
Q ss_pred ccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCC
Q 016933 116 LLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPER 195 (380)
Q Consensus 116 ~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 195 (380)
..... +. ...|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+++
T Consensus 77 ~~~~~---~~-------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGIL---GE-------------------GLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCEe---cc-------------------ccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 55443 21 123689999999999999999999999999999999999999877777799
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEccc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTG 274 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g 274 (380)
+++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++.+++..+.+ +.+.+. ...+ ++|+++|+++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEED--LEEELR-LTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCcCC--HHHHHH-HhcCCCCCEEEECCC
Confidence 9999999985599999999999998 899999999999999999998888776654 555555 4444 8999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCCChHHHHHH
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDM 338 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 338 (380)
.......++++++++ |+++.++..............+.+++++.++..+.+ .++++++++
T Consensus 211 ~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (271)
T cd05188 211 GPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTR---EDFEEALDL 270 (271)
T ss_pred CHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence 866788999999997 999999876533322222233458889988875432 345555544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=257.90 Aligned_cols=305 Identities=22% Similarity=0.309 Sum_probs=237.9
Q ss_pred hhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCC
Q 016933 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 12 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
||+++...+.+ +++++.+.|.|.++||+|++.++++|++|+.++.+..+. ..+|.++|||++|+|+.+|++++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 67777776654 888888999999999999999999999999988776532 356889999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|+.... .|+|++|+.++.+.++++|+++
T Consensus 82 Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~~ 112 (331)
T cd08273 82 GDRVAALTR-------------------------------------------------VGGNAEYINLDAKYLVPVPEGV 112 (331)
T ss_pred CCEEEEeCC-------------------------------------------------CcceeeEEEechHHeEECCCCC
Confidence 999985420 1589999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++++.+++++.+||+++.+...+.+|++++|+|+ |.+|++++++|+..|+ +|+++.. +++.++++++|+.. ++.
T Consensus 113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~ 189 (331)
T cd08273 113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDY 189 (331)
T ss_pred CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcC
Confidence 999999999999999999877788999999999997 9999999999999999 8888877 88899999999754 444
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc---------------cccc
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK---------------PINV 312 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~---------------~~~~ 312 (380)
+..+ +.+. ....+++|+++|++|+. ....++++++++ |+++.+|........... ...+
T Consensus 190 ~~~~--~~~~--~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (331)
T cd08273 190 RTKD--WLPA--MLTPGGVDVVFDGVGGE-SYEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPT 263 (331)
T ss_pred CCcc--hhhh--hccCCCceEEEECCchH-HHHHHHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceec
Confidence 4333 3333 23345899999999984 588999999997 999999876432221111 0001
Q ss_pred ccccEEEeeeecCC----CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 313 LNERTLKGTFFGNY----KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 313 ~~~~~i~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
.+..++........ ...+.+.+++++++++.+.. .+.+.+++++++++++.+.+++. +|+|+
T Consensus 264 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 264 GRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred cceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 12222222221100 01135778889999997754 36788999999999999887766 57775
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=255.91 Aligned_cols=312 Identities=24% Similarity=0.331 Sum_probs=245.2
Q ss_pred hhhhhhccCC--CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAG--KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++.+++ +.+++++.+.|++.+++|+||+.++++|+.|+....+.......|.++|||++|+|+.+|+++..+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 7899998888 35999999999999999999999999999998887665433334778999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||+|++.... ...|+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~----------------------------------------------~~~~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASL----------------------------------------------ARGGSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCC----------------------------------------------CCCccceeEEEeCHHHeEECCCCC
Confidence 9999864210 012589999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+..+++.+.+.+.+|++++.+.+.+++|++++|+|+ |.+|++++++|+..|+ +|+++. ++++.+.++++|++.+++.
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~ 192 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDY 192 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecC
Confidence 999999999999999999877888999999999998 8999999999999999 777775 6778888899999888877
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc---ccccccEEEeeee
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI---NVLNERTLKGTFF 323 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~~~~~~i~g~~~ 323 (380)
...+ +.+.+++...+ ++|++++++++ .....+++++++. |+++.++...... ....+ ...+++.+.....
T Consensus 193 ~~~~--~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 266 (325)
T cd08271 193 NDED--VCERIKEITGGRGVDAVLDTVGG-ETAAALAPTLAFN-GHLVCIQGRPDAS--PDPPFTRALSVHEVALGAAHD 266 (325)
T ss_pred CCcc--HHHHHHHHcCCCCCcEEEECCCc-HhHHHHHHhhccC-CEEEEEcCCCCCc--chhHHhhcceEEEEEeccccc
Confidence 6654 66777777665 89999999998 4566789999997 9999887553221 11111 1112333333221
Q ss_pred cCC-----CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 324 GNY-----KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 324 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
... ...+.+.++++++.++.+.+. .++.|+++++.++++.+.+++. +|+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 267 HGDPAAWQDLRYAGEELLELLAAGKLEPL--VIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred ccchhhHHHHHHHHHHHHHHHHCCCeeec--cceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 111 011235678888888876543 4688999999999999987766 5988764
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=253.70 Aligned_cols=311 Identities=25% Similarity=0.330 Sum_probs=248.1
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++..++.+ +++++.+.|.+.+++|+|++.++++|++|+.+..+... ....|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 688999877765 77888888888999999999999999999988766543 233578899999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+.... |+. ...|+|++|+.++.+.++++|+.
T Consensus 81 ~Gd~V~~~~~--------------------------~~~------------------~~~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG--------------------------GLG------------------GLQGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC--------------------------CcC------------------CCCCceeEEEEecHHHcccCCCC
Confidence 9999985421 100 01368999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++..++.+++.+.+||+++.+...++++++++|+|+ |.+|++++++|+..|+ +|+++.++ ++.++++++|++.+++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIY 194 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEe
Confidence 9999999999999999999878889999999999986 9999999999999999 78888787 8999999999988877
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
.... +.+.+.+.+.+ ++|+++|++|+ .....++++++++ |+++.++... .. ..... ..+++++.+.....
T Consensus 195 ~~~~---~~~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~ 265 (326)
T cd08272 195 YRET---VVEYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALY-GRVVSILGGA-TH--DLAPL-SFRNATYSGVFTLL 265 (326)
T ss_pred cchh---HHHHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccC-CEEEEEecCC-cc--chhhH-hhhcceEEEEEccc
Confidence 5442 66677777766 89999999998 5788899999997 9999988653 11 11111 24566666655321
Q ss_pred --C---C---CCCChHHHHHHHHcCCCCCCCcee-eeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 326 --Y---K---PRTDLPSVVDMYMNKQLELEKFIT-HRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 326 --~---~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. . ..+.+.++++++.++.+.. .++ +.|+++++.++++.+.+++. +|+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 266 PLLTGEGRAHHGEILREAARLVERGQLRP--LLDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred ccccccchhhHHHHHHHHHHHHHCCCccc--ccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 0 0 1124667888888887653 234 88999999999999987766 6998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=250.32 Aligned_cols=316 Identities=27% Similarity=0.376 Sum_probs=248.2
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+.+.+.+.+ +++.+.+.|.+.+++++|++.++++|+.|+.+..+... ....|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 577777665543 67778888888999999999999999999988766543 234578899999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+..+... ....|++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~--------------------------------------------~~~~g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAAD--------------------------------------------LGQYGTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEeccccc--------------------------------------------cCCCccceEEEEechHhcEeCCCC
Confidence 999998653210 001358999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+++.+++.+.++|.++.....+.++++++|+|+ |.+|++++++++..|+ +++.+++++++.+.++++|++.+++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 195 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIV 195 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999877888999999999997 9999999999999999 8888889999999999999988887
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~ 324 (380)
.+..+ +.+.+.....+ ++|++++++|+ .....++++++++ |+++.+|.... ........ .+.++.++.+..+.
T Consensus 196 ~~~~~--~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (328)
T cd08268 196 TDEED--LVAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPG-GTLVVYGALSG-EPTPFPLKAALKKSLTFRGYSLD 270 (328)
T ss_pred cCCcc--HHHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccC-CEEEEEEeCCC-CCCCCchHHHhhcCCEEEEEecc
Confidence 76544 66777777665 89999999998 6788899999997 99999986542 11122222 24577777776543
Q ss_pred CCCC-CC----ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKP-RT----DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.... .. .+..+.+++.++.+... .++.|+++++.++++.+.+++. +|++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 271 EITLDPEARRRAIAFILDGLASGALKPV--VDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCcCC--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 2110 11 23444455666665543 5678999999999999988766 5888763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=247.30 Aligned_cols=292 Identities=25% Similarity=0.372 Sum_probs=232.2
Q ss_pred cCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccC
Q 016933 30 VAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRS 108 (380)
Q Consensus 30 ~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~ 108 (380)
.|.+.+++|+||+.++++|+.|+....+..+ ...+|.++|+|++|+|+++|+++++|++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 5778899999999999999999998877543 23568899999999999999999999999999864210
Q ss_pred CCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhh
Q 016933 109 DVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188 (380)
Q Consensus 109 ~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 188 (380)
..|+|++|+.++.+.++++|+++++++++.+++.+.+||.++
T Consensus 72 -------------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 -------------------------------------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred -------------------------------------CCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 125899999999999999999999999999999999999986
Q ss_pred hccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-Cc
Q 016933 189 NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GV 266 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~ 266 (380)
+...+++|++++|+|+ |.+|++++|+|+.+|+ +|+++.+++++.+.++++|++.+++....+ +.+.+++++++ ++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~i~~~~~~~~~ 190 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVEED--FEEEIMRLTGGRGV 190 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCCcc--HHHHHHHHcCCCCc
Confidence 5788999999999976 9999999999999999 899998999999999999999998876654 77778887776 89
Q ss_pred cEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC---CC---CCCChHHHHHHHH
Q 016933 267 DRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN---YK---PRTDLPSVVDMYM 340 (380)
Q Consensus 267 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~---~~~~~~~~~~~~~ 340 (380)
|+++|++++ ......+++++++ |+++.+|..............+.++..+....+.. .. ..+.+.++++++.
T Consensus 191 d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (303)
T cd08251 191 DVVINTLSG-EAIQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVE 268 (303)
T ss_pred eEEEECCcH-HHHHHHHHHhccC-cEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHH
Confidence 999999976 6788899999997 99999876532211122222222333332222111 00 1123667888888
Q ss_pred cCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 341 NKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
++.+.. +.++.|++++++++++.+.+++. +|+++
T Consensus 269 ~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 269 EGELRP--TVSRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred CCCccC--CCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 887654 35788999999999999988766 47764
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=247.55 Aligned_cols=311 Identities=24% Similarity=0.313 Sum_probs=249.7
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|+|+.+...+.+ +++.+.+.|.+++++++|++.++++|+.|+....+.... ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 577777666655 666677777789999999999999999998887664432 33578999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+... ..|+|++|+.++...++++|+.
T Consensus 81 ~Gd~V~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALV-------------------------------------------------AGGGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEcc-------------------------------------------------CCCcceeEEEecHHHcEeCCCC
Confidence 999998531 0158999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+++.+++++.++|.++.+...++++++++|+|+ |.+|++++++++..|+ +|+++.+++++.+.++++|++.+++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAIN 190 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence 9999999999999999998878889999999999996 9999999999999999 8888889999999999999988877
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 324 (380)
....+ +.+.+....++ ++|+++|++|+ .....++++++++ |+++.+|....... ......+ .+++++.+....
T Consensus 191 ~~~~~--~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (325)
T TIGR02824 191 YREED--FVEVVKAETGGKGVDVILDIVGG-SYLNRNIKALALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTLR 265 (325)
T ss_pred cCchh--HHHHHHHHcCCCCeEEEEECCch-HHHHHHHHhhccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEehh
Confidence 65543 66777777665 89999999998 5788899999997 99999987542221 3333333 588888887654
Q ss_pred CCCCC-------CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPR-------TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..... ..+.+++++++++.+.+ +.++.+++++++++++.+.+++. +|+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 266 ARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 32111 12355677888886653 36788999999999999987766 5888763
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=244.50 Aligned_cols=309 Identities=22% Similarity=0.333 Sum_probs=241.1
Q ss_pred hhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 13 AAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 13 a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|+.+...+. .+.+.+.+.|.|.+++|+||+.++++|+.|...+.+... ....|.++|||++|+|+.+|+++.+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G 81 (337)
T cd08275 2 AVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVG 81 (337)
T ss_pred eEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCC
Confidence 444444443 277778888888999999999999999999998877543 23457789999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|+|+.... .|+|++|+.++.+.++++|+.++
T Consensus 82 ~~V~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~ip~~~~ 112 (337)
T cd08275 82 DRVMGLTR-------------------------------------------------FGGYAEVVNVPADQVFPLPDGMS 112 (337)
T ss_pred CEEEEecC-------------------------------------------------CCeeeeEEEecHHHeEECCCCCC
Confidence 99985410 14899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+.+++.+++.+.++|+++.+...++++++|+|+|+ |.+|++++++|+.+ +. .++.. ..+++.+.++++|++.+++.
T Consensus 113 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~ 190 (337)
T cd08275 113 FEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVIDY 190 (337)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEeeC
Confidence 99999999999999999877888999999999997 99999999999998 33 33222 34568888889999888887
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc--eee-------------cc-ccc
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA--VFM-------------TK-PIN 311 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~--~~~-------------~~-~~~ 311 (380)
...+ +.+.++..+++++|+++|++|+ .....++++++++ |+++.+|...... ... .. ...
T Consensus 191 ~~~~--~~~~~~~~~~~~~d~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (337)
T cd08275 191 RTQD--YVEEVKKISPEGVDIVLDALGG-EDTRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKL 266 (337)
T ss_pred CCCc--HHHHHHHHhCCCceEEEECCcH-HHHHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHH
Confidence 6654 7777877776689999999998 5778899999997 9999998654211 111 00 112
Q ss_pred cccccEEEeeeecCCCCC-----CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 312 VLNERTLKGTFFGNYKPR-----TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 312 ~~~~~~i~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+.++.++.++........ ..+.+++++++++.+.+. .++.|++++++++++.+.+++. +|+++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 267 ISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPK--IDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred hhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCc--eeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 346777777654321111 125678888888876543 5788999999999999988766 5998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=245.72 Aligned_cols=302 Identities=23% Similarity=0.347 Sum_probs=238.4
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|||+++..++.. +++++.+.|+++++||+|++.++++|+.|+....+... ....|.++|||++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678888776654 56677778888999999999999999999988776442 3445889999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
+++||+|+..... ...|+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~----------------------------------------------~~~g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF----------------------------------------------TRGGAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC----------------------------------------------CCCCcceeEEEecHHHhccCC
Confidence 9999999865210 002589999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
+++++..++.+++.+.++|+++.+...+.++++++|+|+ |.+|++++++|+..|+ +|+++..++ +.+.++++|++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~ 192 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV 192 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence 999999999999999999999777677999999999997 9999999999999999 788887777 8888899998888
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeec
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFG 324 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 324 (380)
++....+ +.+ ....+++|+++|++|+ .....++++++++ |+++.+|....... ..+.++.++....+.
T Consensus 193 ~~~~~~~--~~~---~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~ 260 (309)
T cd05289 193 IDYTKGD--FER---AAAPGGVDAVLDTVGG-ETLARSLALVKPG-GRLVSIAGPPPAEQ-----AAKRRGVRAGFVFVE 260 (309)
T ss_pred EeCCCCc--hhh---ccCCCCceEEEECCch-HHHHHHHHHHhcC-cEEEEEcCCCcchh-----hhhhccceEEEEEec
Confidence 8766544 322 2222379999999998 5788999999997 99999987542111 222344555444331
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
.. .+.+.+++++++++.+. +++++.|++++++++++.+.+++. +|+++
T Consensus 261 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 261 PD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred cc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 11 34688889999888654 336788999999999999987765 47663
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-31 Score=243.07 Aligned_cols=309 Identities=28% Similarity=0.477 Sum_probs=247.2
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCC-CCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQ-AMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
|+|+++.+++.+ +++.+.+ |.+. +++++|++.++++|+.|+....+.... ...|.++|||++|+|+.+|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 578887654443 6676776 6666 599999999999999999887765432 3446689999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|+... ..|++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALT-------------------------------------------------GQGGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEec-------------------------------------------------CCceeEEEEEcCHHHceeCCC
Confidence 9999998541 024899999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
++++.+++.+...+.+||.++.+...++++++++|+|+ |.+|++++++|+..|+ +|++++.++++.+.++++|++.++
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVI 189 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceee
Confidence 99999988898899999998777788999999999997 9999999999999999 799998999999999999998888
Q ss_pred cCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccccccEEEeeee
Q 016933 246 NTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVLNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~i~g~~~ 323 (380)
+....+ +.+.+...+++ ++|.++|++|+ ..+..++++++++ |+++.+|....... .... ..+.++.++.+...
T Consensus 190 ~~~~~~--~~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (323)
T cd08241 190 DYRDPD--LRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIGFASGEIP-QIPANLLLLKNISVVGVYW 264 (323)
T ss_pred ecCCcc--HHHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC-CEEEEEccCCCCcC-cCCHHHHhhcCcEEEEEec
Confidence 776644 77778887776 89999999998 7788899999997 99999987532211 1111 22347778887664
Q ss_pred cCCCC------CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEe
Q 016933 324 GNYKP------RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIIS 377 (380)
Q Consensus 324 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~ 377 (380)
..+.. .+.+.++++++.++.+.+ +.++.|+++++.++++.+.+++. +|++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 265 GAYARREPELLRANLAELFDLLAEGKIRP--HVSAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred ccccchhHHHHHHHHHHHHHHHHCCCccc--ccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 43221 124677888888887643 36788999999999999887766 588763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=240.70 Aligned_cols=295 Identities=24% Similarity=0.319 Sum_probs=225.6
Q ss_pred EEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCC
Q 016933 24 IIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGEC 100 (380)
Q Consensus 24 ~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~ 100 (380)
++++.++|+|.++||+|++.++++|+.|+..+.|..+ ....|.++|||++|+|+++|++++.+++||+|+......
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 7788899999999999999999999999988776542 133567899999999999999999999999998652110
Q ss_pred CCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhh
Q 016933 101 GDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180 (380)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~ 180 (380)
..|+|++|+.++.+.++++|+++++++++.+++.+
T Consensus 94 ---------------------------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 94 ---------------------------------------------GGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred ---------------------------------------------CCceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 02589999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHH
Q 016933 181 STGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 181 ~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~ 259 (380)
.+||+++.+...+++|++++|+|+ |.+|++++++|+.+|+ +|+++.++ ++.+.++++|++++++....+ +. .
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~--~~---~ 201 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTTED--FV---A 201 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCCCC--cc---h
Confidence 999999777777999999999997 9999999999999999 88888765 888888999998888776544 32 3
Q ss_pred HHhCC-CccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcCCCCCceeec---cccccccccEEEeeeecCCCCCCChHH
Q 016933 260 EMTNG-GVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGVPSKDAVFMT---KPINVLNERTLKGTFFGNYKPRTDLPS 334 (380)
Q Consensus 260 ~~~~~-~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~i~g~~~~~~~~~~~~~~ 334 (380)
..+.+ ++|+++||+|+. ......+..++++ |+++.+|.......... ..........+...... ...+.+.+
T Consensus 202 ~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 278 (319)
T cd08267 202 LTAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAK--PNAEDLEQ 278 (319)
T ss_pred hccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccccccccccccchhhccccceEEEEEec--CCHHHHHH
Confidence 33444 899999999852 2333444448996 99999987643222211 01111111222221111 11456888
Q ss_pred HHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 335 VVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
+++++.++++.. ++++.|+++++++|++.+.+++. +|+++
T Consensus 279 ~~~~l~~~~~~~--~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 279 LAELVEEGKLKP--VIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHHCCCeee--eeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 999999887653 36788999999999999987765 47663
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=235.09 Aligned_cols=282 Identities=22% Similarity=0.280 Sum_probs=227.0
Q ss_pred CeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCc
Q 016933 36 MEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCD 115 (380)
Q Consensus 36 ~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~ 115 (380)
+||+||+.++++|++|+....+.. ..+|.++|||++|+|+++|++++.|++||+|++..
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 589999999999999999887754 34578999999999999999999999999998541
Q ss_pred ccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCC
Q 016933 116 LLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPER 195 (380)
Q Consensus 116 ~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 195 (380)
.|+|++|+.++.+.++++|+.+++.+++.+++++.++|.++.+...+++
T Consensus 60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 2589999999999999999999999999999999999999877788999
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC--CceEecCCCCCccHHHHHHHHhCC-CccEEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG--VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG--~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d 271 (380)
|++++|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++| ++.+++....+ +.+.+++.+.+ ++|+++|
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vi~ 185 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRDLS--FADGILRATGGRGVDVVLN 185 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCchh--HHHHHHHHhCCCCceEEEe
Confidence 999999985 9999999999999999 8899989999999999988 67778765543 77788887766 8999999
Q ss_pred cccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC------CCCChHHHHHHHHcCCCC
Q 016933 272 CTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK------PRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~~~~~ 345 (380)
++|+. .+..++++++++ |+++.+|..............+.++.++....+.... ..+.+.++++++.++++.
T Consensus 186 ~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (293)
T cd05195 186 SLSGE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK 263 (293)
T ss_pred CCCch-HHHHHHHhcccC-ceEEEeeccccccCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc
Confidence 99984 889999999997 9999998754221111222223344555544332210 012467788888888765
Q ss_pred CCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 346 LEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 346 ~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
+ ..++.++++++.++++.+.+++. +|+++
T Consensus 264 ~--~~~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 264 P--LPPTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred c--CCCeeechhhHHHHHHHHhcCCCCceecC
Confidence 3 35678899999999999988776 47764
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=230.84 Aligned_cols=277 Identities=21% Similarity=0.322 Sum_probs=222.9
Q ss_pred EEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCccccc
Q 016933 40 IKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRI 119 (380)
Q Consensus 40 V~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (380)
||+.++++|+.|+....+..+ .|.++|||++|+|+++|++++.|++||+|+...
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 899999999999998877543 367899999999999999999999999998531
Q ss_pred CCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeE
Q 016933 120 NPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSV 199 (380)
Q Consensus 120 ~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v 199 (380)
.|+|++|+.++.+.++++|+++++.+++.+++.+.++|.++.+...+.+|++|
T Consensus 56 ---------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 ---------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ---------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 25899999999999999999999999999999999999987778889999999
Q ss_pred EEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--ceEecCCCCCccHHHHHHHHhCC-CccEEEEcccC
Q 016933 200 AVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--TDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGN 275 (380)
Q Consensus 200 lI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~ 275 (380)
+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|+ +.++++.+.+ +.+.+.+..++ ++|+++|++|+
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vi~~~~~ 185 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRDLS--FADEILRATGGRGVDVVLNSLAG 185 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCCcc--HHHHHHHHhCCCCcEEEEeCCCH
Confidence 99986 9999999999999999 89999899999999999998 7788776554 77778777765 89999999996
Q ss_pred hhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC-----CCCChHHHHHHHHcCCCCCCCce
Q 016933 276 IDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK-----PRTDLPSVVDMYMNKQLELEKFI 350 (380)
Q Consensus 276 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 350 (380)
......+++++++ |+++.+|..............+.++.++.+..+.... ..+.+.++++++.++++.+. .
T Consensus 186 -~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 261 (288)
T smart00829 186 -EFLDASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--P 261 (288)
T ss_pred -HHHHHHHHhccCC-cEEEEEcCcCCccccccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--C
Confidence 7788899999997 9999998753211111222223455555554432111 11235677888888876543 4
Q ss_pred eeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 351 THRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 351 ~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
.+.|+++++.++++.+.+++. +|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 262 VTVFPISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred ceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence 578999999999999988765 47663
|
Enoylreductase in Polyketide synthases. |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=208.15 Aligned_cols=295 Identities=19% Similarity=0.202 Sum_probs=222.5
Q ss_pred EEEeecC-CCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCcccc----ccccEEEEEeCCCCCCCCCCCEEEecCcc
Q 016933 25 IQDVEVA-PPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFG----HEAAGVVESVGEGVSDLEVGDHVLPVFTG 98 (380)
Q Consensus 25 ~~~~~~p-~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G----~e~vG~V~~vG~~v~~~~~GdrV~~~~~~ 98 (380)
..+++++ ++++++||||.+|.+..|--...++.-.+. .-.|+.|| ..++|+|++. +.+++++||.|...
T Consensus 26 ~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~--- 100 (343)
T KOG1196|consen 26 TTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGI--- 100 (343)
T ss_pred eeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEe---
Confidence 3444443 468899999999999876543332211111 11223232 2789999995 55789999999843
Q ss_pred CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccc--eEeCCC--CCCccchh
Q 016933 99 ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC--VAKINP--LAPLDKVC 174 (380)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~--~~~~p~--~~~~~~aa 174 (380)
. +|.||.++++.. .+++|. ++++-...
T Consensus 101 ---------------------------~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~yl 131 (343)
T KOG1196|consen 101 ---------------------------V----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYL 131 (343)
T ss_pred ---------------------------c----------------------cceEEEEecCcchhcccCCCCCccCHhhhh
Confidence 2 799999997753 344433 33333333
Q ss_pred -hcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCC
Q 016933 175 -ILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHD 251 (380)
Q Consensus 175 -~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~ 251 (380)
.+..+..|||..+.+...+++|++|+|-|| |++|+++.|+||.+|+ +|+++..+++|.++++. +|.+..+||.++.
T Consensus 132 g~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~ 210 (343)
T KOG1196|consen 132 GLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKEES 210 (343)
T ss_pred hccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccCcc
Confidence 356678999999999999999999999987 9999999999999999 99999999999999987 7999999998862
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc---eeeccc-c-ccccccEEEeeeecCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA---VFMTKP-I-NVLNERTLKGTFFGNY 326 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---~~~~~~-~-~~~~~~~i~g~~~~~~ 326 (380)
.+.+++++..++++|+.||.+|+ ..+...+..|+.. ||++++|+.+.-. ...+.. . -+.|++.+.|+....+
T Consensus 211 -~~~~aL~r~~P~GIDiYfeNVGG-~~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~ 287 (343)
T KOG1196|consen 211 -DLSAALKRCFPEGIDIYFENVGG-KMLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDY 287 (343)
T ss_pred -CHHHHHHHhCCCcceEEEeccCc-HHHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeech
Confidence 28889999888899999999999 8999999999996 9999999875321 111111 1 2348888988765554
Q ss_pred CCC--CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 327 KPR--TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 327 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.++ +.+..+..++++|++...+-+ .-+|+..+.||..|.++.+ +|.++.+.
T Consensus 288 ~d~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 288 LDKYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred hhhhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCcccceEEEee
Confidence 433 346788899999998765433 3369999999999999988 69998875
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=217.76 Aligned_cols=247 Identities=27% Similarity=0.417 Sum_probs=196.4
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCcc
Q 016933 62 PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPV 141 (380)
Q Consensus 62 ~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~ 141 (380)
.++|.++|||++|+|+++|+++++|++||+|+..
T Consensus 18 ~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~---------------------------------------------- 51 (277)
T cd08255 18 LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF---------------------------------------------- 51 (277)
T ss_pred CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec----------------------------------------------
Confidence 4588999999999999999999999999999854
Q ss_pred ccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc
Q 016933 142 NHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGAS 221 (380)
Q Consensus 142 ~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~ 221 (380)
+.|++|+.++.+.++++|+++++++++.+ +.+.+||+++ ...++++++++||+|+|.+|++++++|+.+|++
T Consensus 52 ------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~ 123 (277)
T cd08255 52 ------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAR 123 (277)
T ss_pred ------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence 26899999999999999999999999888 7899999986 578899999999998899999999999999994
Q ss_pred EEEEEcCChhHHHHHHhcC-CceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 222 RIIGVDRSSKRFEEAKKFG-VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 222 ~vi~~~~~~~~~~~~~~lG-~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+|+++++++++.++++++| ++.+++.... ....+++|++||+++....+...+++++++ |+++.+|...
T Consensus 124 ~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~ 193 (277)
T cd08255 124 EVVGVDPDAARRELAEALGPADPVAADTAD---------EIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGWYG 193 (277)
T ss_pred cEEEECCCHHHHHHHHHcCCCccccccchh---------hhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEEEEeccC
Confidence 4999999999999999999 5555443221 112238999999998767889999999997 9999998765
Q ss_pred CCceeeccccccc-cccEEEeeeecCC---------CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC
Q 016933 301 KDAVFMTKPINVL-NERTLKGTFFGNY---------KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370 (380)
Q Consensus 301 ~~~~~~~~~~~~~-~~~~i~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~ 370 (380)
.. ..... ..+. +..++.+...... ...+.++++++++.++.+.. .+.+.|+++++++|++.+.+++
T Consensus 194 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~ 269 (277)
T cd08255 194 LK-PLLLG-EEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEA--LITHRVPFEDAPEAYRLLFEDP 269 (277)
T ss_pred CC-ccccH-HHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccc--cccCccCHHHHHHHHHHHHcCC
Confidence 33 11111 1122 4556665543221 11246889999999997553 3578899999999999998873
Q ss_pred c--eeEEE
Q 016933 371 G--LRCII 376 (380)
Q Consensus 371 ~--~Kvvi 376 (380)
. .|+++
T Consensus 270 ~~~~k~~~ 277 (277)
T cd08255 270 PECLKVVL 277 (277)
T ss_pred ccceeeeC
Confidence 3 58764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=232.75 Aligned_cols=293 Identities=16% Similarity=0.172 Sum_probs=237.8
Q ss_pred eEEEEeecC---CCCCCeEEEEEeeeecCcccchhhccCCCCC-------CCCccccccccEEEEEeCCCCCCCCCCCEE
Q 016933 23 LIIQDVEVA---PPQAMEVRIKIKYTSLCRTDLYFWESKGQTP-------LFPRIFGHEAAGVVESVGEGVSDLEVGDHV 92 (380)
Q Consensus 23 ~~~~~~~~p---~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~-------~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV 92 (380)
+++.+-+.. +..++.=+--|-|++||..|+.+..|+.+.. ....++|-|++|+- +-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEE
Confidence 555555544 2356777899999999999999998876432 34568999999984 449999
Q ss_pred EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccc
Q 016933 93 LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK 172 (380)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~ 172 (380)
+....- -++++-+.++.+++|.+|++.++++
T Consensus 1499 M~mvpA-------------------------------------------------ksLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPA-------------------------------------------------KSLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeeeh-------------------------------------------------hhhhhhhhcchhhhhhCCcccchhh
Confidence 854311 1689999999999999999999999
Q ss_pred hhhcchhhhhhhhhhhhccCCCCCCeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC----CceEecC
Q 016933 173 VCILSCGVSTGLGATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG----VTDFVNT 247 (380)
Q Consensus 173 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG----~~~vi~~ 247 (380)
|++.||.++|+||||..+...++|++|||++ +|++|++||.+|.+.|+ +|+.+..+.+|++++++.- ...+-|.
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NS 1608 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANS 1608 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccc
Confidence 9999999999999999999999999999995 59999999999999999 9999999999999998743 3445555
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
.+.+ |..-+...+.| |+|+|++.... +-+..+++||+-+ ||+..+|...-....++...-|.+|.+++|..+...
T Consensus 1609 Rdts--FEq~vl~~T~GrGVdlVLNSLae-EkLQASiRCLa~~-GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsv 1684 (2376)
T KOG1202|consen 1609 RDTS--FEQHVLWHTKGRGVDLVLNSLAE-EKLQASIRCLALH-GRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSV 1684 (2376)
T ss_pred cccc--HHHHHHHHhcCCCeeeehhhhhH-HHHHHHHHHHHhc-CeeeeecceecccCCcchhhhhhcccceeeeehhhh
Confidence 5555 88889999998 99999999987 7899999999997 999999875433344444555679999999765433
Q ss_pred CCC--CChHHHHHHHHcCCC--CCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 327 KPR--TDLPSVVDMYMNKQL--ELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 327 ~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.+. +.+.++..++++|.- ...|+.+++|+-+++++||++|.++++ +|+||++-
T Consensus 1685 mege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr 1742 (2376)
T KOG1202|consen 1685 MEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVR 1742 (2376)
T ss_pred hcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEc
Confidence 222 357778888877732 256678999999999999999999998 69999863
|
|
| >PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=161.77 Aligned_cols=108 Identities=36% Similarity=0.639 Sum_probs=94.5
Q ss_pred CCeEEEEEeeeecCcccchhhcc-CCCCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCC
Q 016933 35 AMEVRIKIKYTSLCRTDLYFWES-KGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNM 113 (380)
Q Consensus 35 ~~eVlV~v~~~~l~~~D~~~~~g-~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~ 113 (380)
|+||||||+++|||++|+.++.+ ......+|.++|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+.+++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999998 35567899999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 114 CDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 114 ~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
|++.... |+. ..|+||||+.++.++++++
T Consensus 81 c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEVL---GLG-------------------LDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEET---TTS-------------------STCSSBSEEEEEGGGEEEE
T ss_pred CCCCCEe---EcC-------------------CCCcccCeEEEehHHEEEC
Confidence 9877665 332 1369999999999999885
|
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=131.37 Aligned_cols=128 Identities=32% Similarity=0.555 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHH
Q 016933 206 AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFE 284 (380)
Q Consensus 206 ~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~ 284 (380)
++|++++|+||.+|+ +|++++++++|+++++++|+++++++++.+ +.+.+++++++ ++|+||||+|.++.++.+++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~--~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSDDD--FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTTSS--HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccccc--cccccccccccccceEEEEecCcHHHHHHHHH
Confidence 589999999999997 999999999999999999999999998887 99999999998 99999999998899999999
Q ss_pred HhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCCCCCCChHHHHHHHHc
Q 016933 285 CVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMN 341 (380)
Q Consensus 285 ~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~ 341 (380)
+++++ |+++++|... .....++... +.+++++.|++.+. .++++++++++++
T Consensus 78 ~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la~ 130 (130)
T PF00107_consen 78 LLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLAQ 130 (130)
T ss_dssp HEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH-
T ss_pred HhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhcC
Confidence 99997 9999999987 4455544444 45999999998654 3568888877653
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=121.84 Aligned_cols=176 Identities=21% Similarity=0.221 Sum_probs=134.1
Q ss_pred hhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh
Q 016933 184 LGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 184 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.++.+..+ .-+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|.+.++.+|++.+. ..+.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~--------~~e~v---- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMT--------MEEAV---- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEcc--------HHHHH----
Confidence 445555444 4689999999999999999999999999 899999999999999999985431 21222
Q ss_pred CCCccEEEEcccChhhHHHH-HHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCCChH--HHHHHH
Q 016933 263 NGGVDRSVECTGNIDNMISA-FECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLP--SVVDMY 339 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~--~~~~~~ 339 (380)
.++|+||+++|.+..+... +..++++ |+++.+|.. +..++.... ..+++++.++..+. ...+++ +.+.++
T Consensus 256 -~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~--~~eId~~~L-~~~el~i~g~~~~~--~~~~~~~g~aI~LL 328 (413)
T cd00401 256 -KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF--DVEIDVKGL-KENAVEVVNIKPQV--DRYELPDGRRIILL 328 (413)
T ss_pred -cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC--CCccCHHHH-HhhccEEEEccCCc--ceEEcCCcchhhhh
Confidence 2589999999998888865 9999997 999999954 223333222 23788888876432 122455 689999
Q ss_pred HcCCC-CCCCceeee-----eccc-cHHHHHHHHHcCCc--eeEEEecC
Q 016933 340 MNKQL-ELEKFITHR-----IPFS-EINKAFEYMVKGEG--LRCIISME 379 (380)
Q Consensus 340 ~~~~~-~~~~~~~~~-----~~l~-~~~~a~~~l~~~~~--~Kvvi~~~ 379 (380)
.+|++ ++..+++|. ++|+ |+.++++.+.++.. .|+++.+.
T Consensus 329 a~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 329 AEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred hCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 99988 888888888 8999 99999999988765 47777654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=119.88 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=113.2
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCC-----------ccHHHHHH
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHD-----------RPIQEVIA 259 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~-----------~~~~~~~~ 259 (380)
+..++++|+|+|+|.+|++|++.|+.+|+ +|++++.+++|++.++++|++.+ ++..+.+ .++.+...
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 35689999999999999999999999999 89999999999999999999854 5553321 12333333
Q ss_pred HH-hC--CCccEEEEcccChh-----h-HHHHHHHhhcCCcEEEEEcCCCCCc-eeeccccc-cc-cccEEEeeeecCCC
Q 016933 260 EM-TN--GGVDRSVECTGNID-----N-MISAFECVHDGWGVAVLVGVPSKDA-VFMTKPIN-VL-NERTLKGTFFGNYK 327 (380)
Q Consensus 260 ~~-~~--~~~d~v~d~~g~~~-----~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~-~~-~~~~i~g~~~~~~~ 327 (380)
+. .+ +++|++|+|+|.+. + .+++++.++++ |+++.+|...+.. ....+... +. +++++.|.... .
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~--P 316 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDL--P 316 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCCC--c
Confidence 33 33 37999999999643 5 49999999997 9999999853221 23322222 33 78899987632 2
Q ss_pred CCCChHHHHHHHHcCCCCCCCcee
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFIT 351 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~ 351 (380)
.+...++.+++.++.+.+.++++
T Consensus 317 -~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 317 -SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred -hhHHHHHHHHHHhCCccHHHHhc
Confidence 23333689999999887666554
|
|
| >PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-12 Score=103.42 Aligned_cols=119 Identities=18% Similarity=0.335 Sum_probs=76.5
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc--ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccc
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG--NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNE 315 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~ 315 (380)
||+++++||++.+ + ...+++|+|||++| ....+..+.++| ++ |+++.++. ....... .+.
T Consensus 1 LGAd~vidy~~~~--~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-------~~~~~~~~~~~ 63 (127)
T PF13602_consen 1 LGADEVIDYRDTD--F------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-------DLPSFARRLKG 63 (127)
T ss_dssp CT-SEEEETTCSH--H------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-------HHHHHHHHHHC
T ss_pred CCcCEEecCCCcc--c------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-------cccchhhhhcc
Confidence 6999999998654 4 22458999999999 655557777888 96 99999874 1000111 111
Q ss_pred cEEEeeeecCCC----CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEE
Q 016933 316 RTLKGTFFGNYK----PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCII 376 (380)
Q Consensus 316 ~~i~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi 376 (380)
..+....+.... ..+.++++++++.+|++.+. +.++||++++++|++.+++++. +|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~--i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 64 RSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP--IDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred cceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe--eccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 222222221100 22359999999999987665 7889999999999999999988 79986
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=83.74 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCC-----------CccHHHHHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEH-----------DRPIQEVIAEM 261 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~-----------~~~~~~~~~~~ 261 (380)
.++++++|+|+|.+|++++++|+.+|+ .|++++.+.++++.++++|++.+ ++..+. ..++.+...+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 467999999999999999999999999 79999999999999999999763 332210 11234333333
Q ss_pred hC---CCccEEEEcc---cChh---hHHHHHHHhhcCCcEEEEEcCCCCC
Q 016933 262 TN---GGVDRSVECT---GNID---NMISAFECVHDGWGVAVLVGVPSKD 302 (380)
Q Consensus 262 ~~---~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~~ 302 (380)
.. .++|++|+|+ |.+. ..+.+++.++++ +.++.++...+.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~GG 289 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQGG 289 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCCC
Confidence 33 3799999999 6543 577899999997 999988876543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=82.56 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=102.6
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCC
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.+.+++|++||.+|+|. |..++++++..|.. +|++++.+++.++.+++. |.+.+- ....+ +.+ + .+..+
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~~d--~~~-l-~~~~~ 145 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRLGE--IEA-L-PVADN 145 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEEcc--hhh-C-CCCCC
Confidence 35688999999999877 88888888887753 799999999999988773 332221 11111 111 1 11234
Q ss_pred CccEEEEcc------cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCCCChHHHHHH
Q 016933 265 GVDRSVECT------GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDM 338 (380)
Q Consensus 265 ~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 338 (380)
.+|+|+... .....+..+.+.|+++ |++++.+..... ... ..+.+...+.+..... .....++.++
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~~~---~~~~~~~~~~~~~~~~---~~~~~e~~~~ 217 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-ELP---EEIRNDAELYAGCVAG---ALQEEEYLAM 217 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-CCC---HHHHHhHHHHhccccC---CCCHHHHHHH
Confidence 799988543 2345789999999997 999988765322 111 1111222222211111 1245667777
Q ss_pred HHc-CCCCCCCceeeeeccccHHHHHHHH--HcCC
Q 016933 339 YMN-KQLELEKFITHRIPFSEINKAFEYM--VKGE 370 (380)
Q Consensus 339 ~~~-~~~~~~~~~~~~~~l~~~~~a~~~l--~~~~ 370 (380)
+++ |.........+.++++++.++++.+ .+++
T Consensus 218 l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~ 252 (272)
T PRK11873 218 LAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGR 252 (272)
T ss_pred HHHCCCCceEEEeccceecccHHHHHHHhcccccc
Confidence 766 4333332244567889999999988 5544
|
|
| >PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=77.70 Aligned_cols=204 Identities=11% Similarity=0.091 Sum_probs=118.7
Q ss_pred ceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhcc---CCCCCCeEEEEcC-CHHHHHHHHHHH-HcCCcEE
Q 016933 149 TFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA---KPERGSSVAVFGL-GAVGLAAAEGAR-IAGASRI 223 (380)
Q Consensus 149 ~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~vlI~G~-g~~G~~ai~la~-~~g~~~v 223 (380)
.|-+|..+..+..+.- ......+..-| .+.|+|. |.+.. +.-..+.|+|.+| +.+++..+.+++ ..+.-++
T Consensus 90 ~YN~Y~r~~~d~~y~~--~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYDP--EREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccCc--chhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 4677777665543311 11122222223 3455553 22221 1233467888887 889988888888 4555489
Q ss_pred EEEcCChhHHHHHHhcCC-ceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC
Q 016933 224 IGVDRSSKRFEEAKKFGV-TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302 (380)
Q Consensus 224 i~~~~~~~~~~~~~~lG~-~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~ 302 (380)
|++ +|..+.+..+.+|+ |.|+.|++ +..+.....-+++|..|+.+++..+.+.+....-..+.+|.+..+
T Consensus 166 vgl-TS~~N~~Fve~lg~Yd~V~~Yd~--------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~~ 236 (314)
T PF11017_consen 166 VGL-TSARNVAFVESLGCYDEVLTYDD--------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHWD 236 (314)
T ss_pred EEE-ecCcchhhhhccCCceEEeehhh--------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCcc
Confidence 999 77888889999998 77887766 333433467899999999999999999998874557788876533
Q ss_pred ceeecccc------------ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC
Q 016933 303 AVFMTKPI------------NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370 (380)
Q Consensus 303 ~~~~~~~~------------~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~ 370 (380)
..-..... .+.+.+.-.|... ..+.+.+.+..+......+- .+.+.-+.+.+.++++.+.+++
T Consensus 237 ~~~~~~~l~g~~~~~FFAp~~~~kr~~~~G~~~----~~~r~~~aw~~f~~~~~~wl-~~~~~~G~ea~~~~y~~l~~G~ 311 (314)
T PF11017_consen 237 KVEAPADLPGPRPEFFFAPDQIDKRIKEWGAAE----FFQRMAAAWKRFAADAQPWL-KVEEVAGPEAVEAAYQDLLAGK 311 (314)
T ss_pred ccCccccCCCCCcEEEeChHHHHHHHHHhCHHH----HHHHHHHHHHHHHHhhcCcE-EEEEecCHHHHHHHHHHHhcCC
Confidence 22110000 0001111111110 00122233332222222222 1457779999999999998875
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.8e-06 Score=77.99 Aligned_cols=103 Identities=26% Similarity=0.270 Sum_probs=79.3
Q ss_pred hhhhhhhccCCC-CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHH
Q 016933 183 GLGATLNVAKPE-RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 183 a~~~l~~~~~~~-~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.|.++.+...+. .|++++|+|.|.+|...++.++.+|+ +|+++++++.+...+...|++ +.+ +.+.+
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-------l~eal--- 265 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-------MEEAA--- 265 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-------HHHHH---
Confidence 455544443544 89999999999999999999999999 899999998887766667764 221 22222
Q ss_pred hCCCccEEEEcccChhhHH-HHHHHhhcCCcEEEEEcCCC
Q 016933 262 TNGGVDRSVECTGNIDNMI-SAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 300 (380)
.++|++|+++|....+. ..+..++++ +.++.+|...
T Consensus 266 --~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d 302 (425)
T PRK05476 266 --ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD 302 (425)
T ss_pred --hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence 26899999999877776 688888996 8888888764
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-05 Score=71.58 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+++++|+|.|.+|.++++.++.+|+ +|++++++.++.+.++++|++.+ .+ +.+.+... .+|+||++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~--------~~l~~~l~-~aDiVI~t~p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL--------SELAEEVG-KIDIIFNTIP 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH--------HHHHHHhC-CCCEEEECCC
Confidence 58999999999999999999999999 99999999999999999987533 11 11222222 5899999987
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCcee
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVF 305 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 305 (380)
..-.....++.++++ +.++.++...+...+
T Consensus 220 ~~~i~~~~l~~~~~g-~vIIDla~~pggtd~ 249 (296)
T PRK08306 220 ALVLTKEVLSKMPPE-ALIIDLASKPGGTDF 249 (296)
T ss_pred hhhhhHHHHHcCCCC-cEEEEEccCCCCcCe
Confidence 643456778889996 999988877655433
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=73.72 Aligned_cols=102 Identities=28% Similarity=0.320 Sum_probs=78.3
Q ss_pred hhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh
Q 016933 184 LGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 184 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.++.+..+ ..+|++|+|+|.|.+|...++.++.+|+ +|++++.++.+...+...|+. +.+ ..+.+
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~-------leeal---- 248 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT-------MEEAA---- 248 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC-------HHHHH----
Confidence 344444433 4689999999999999999999999999 899998888887777777763 321 22222
Q ss_pred CCCccEEEEcccChhhHHH-HHHHhhcCCcEEEEEcCCC
Q 016933 263 NGGVDRSVECTGNIDNMIS-AFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~-~~~~l~~~~G~~v~~g~~~ 300 (380)
.+.|++|+++|....+.. .+..++++ +.++.+|...
T Consensus 249 -~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~~ 285 (406)
T TIGR00936 249 -KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHFD 285 (406)
T ss_pred -hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence 257999999999887774 88888996 8999888753
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-07 Score=90.00 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=103.7
Q ss_pred ccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCC
Q 016933 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGT 147 (380)
Q Consensus 68 ~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~ 147 (380)
-|.|+++.+.+|+++.++ +|++.+.+ ||-|.+| +..|...... |... .
T Consensus 90 ~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~---g~~l-------------------~ 137 (417)
T TIGR01035 90 TGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTV---GKVL-------------------E 137 (417)
T ss_pred CchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCc---hHHH-------------------H
Confidence 578999999999998776 67777777 8888888 5556544433 3221 1
Q ss_pred cceeeEEEEeccceEe---C-CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEE
Q 016933 148 STFSEYTVVHSGCVAK---I-NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRI 223 (380)
Q Consensus 148 G~~a~~~~v~~~~~~~---~-p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~v 223 (380)
+.|++++.++. .+.. + +..++...+ |.....+..+..++++++|+|+|.+|.++++.++..|+.+|
T Consensus 138 ~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~---------Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V 207 (417)
T TIGR01035 138 RLFQKAFSVGK-RVRTETDISAGAVSISSA---------AVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKI 207 (417)
T ss_pred HHHHHHHHHhh-hhhhhcCCCCCCcCHHHH---------HHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEE
Confidence 47888877765 3332 2 222221111 11101223344678999999999999999999999996689
Q ss_pred EEEcCChhHHH-HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhh
Q 016933 224 IGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 224 i~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
++++++.++.+ +++++|.. .+..++ +.+.+ .++|+||+|++.+..
T Consensus 208 ~v~~rs~~ra~~la~~~g~~-~i~~~~----l~~~l-----~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 208 LIANRTYERAEDLAKELGGE-AVKFED----LEEYL-----AEADIVISSTGAPHP 253 (417)
T ss_pred EEEeCCHHHHHHHHHHcCCe-EeeHHH----HHHHH-----hhCCEEEECCCCCCc
Confidence 99999988754 66777764 222211 22222 258999999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=72.79 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=79.2
Q ss_pred hhhhhhccCC-CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh
Q 016933 184 LGATLNVAKP-ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 184 ~~~l~~~~~~-~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.++.+..++ -.|++++|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+..+ + +.+.++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv-~-------leEal~--- 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL-T-------LEDVVS--- 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec-c-------HHHHHh---
Confidence 4445554443 679999999999999999999999999 89999998887777777777522 1 322221
Q ss_pred CCCccEEEEcccChhhH-HHHHHHhhcCCcEEEEEcCC
Q 016933 263 NGGVDRSVECTGNIDNM-ISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~ 299 (380)
..|+++++.|....+ ...++.++++ +.++.+|..
T Consensus 309 --~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~ 343 (477)
T PLN02494 309 --EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF 343 (477)
T ss_pred --hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence 479999999986654 7899999997 999999874
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.6e-05 Score=66.63 Aligned_cols=131 Identities=20% Similarity=0.189 Sum_probs=82.4
Q ss_pred ceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 149 TFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 149 ~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
+|.+|.. +...++.+++++++..+. .+.. ......+. ..+.++++||-+|+|. |.+++.+++ .|+.+|++++.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt-~~~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi 150 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGT-HPTT-RLCLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI 150 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCC-CHHH-HHHHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence 4555544 667788888887766543 2211 11111211 2256889999999986 888876655 67767999999
Q ss_pred ChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh---hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 229 SSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI---DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 229 ~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++...+.+++. +....+.....+ ..+|+|+...... ..+..+.+.|+++ |.+++.|..
T Consensus 151 s~~~l~~A~~n~~~~~~~~~~~~~~~~------------~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~ 215 (250)
T PRK00517 151 DPQAVEAARENAELNGVELNVYLPQGD------------LKADVIVANILANPLLELAPDLARLLKPG-GRLILSGIL 215 (250)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEccCC------------CCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence 99988887663 221111110100 1589998655432 3456788889997 999988764
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=74.46 Aligned_cols=107 Identities=25% Similarity=0.282 Sum_probs=77.8
Q ss_pred ceEeCCCCCCccchhhcchhhhhhhhhhhhccCC----CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH-H
Q 016933 160 CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKP----ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF-E 234 (380)
Q Consensus 160 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~----~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~-~ 234 (380)
.++++|+.+..+.++... +.++++.++ +.+.. -++++|+|+|+|.+|.++++.++..|+.+|++++++.++. +
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567788888888777654 566776664 33322 4789999999999999999999988877899999998765 6
Q ss_pred HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhh
Q 016933 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 235 ~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
+++++|+. +++.++ +.+.+ ..+|+||.+++.+..
T Consensus 218 la~~~g~~-~~~~~~----~~~~l-----~~aDvVi~at~~~~~ 251 (311)
T cd05213 218 LAKELGGN-AVPLDE----LLELL-----NEADVVISATGAPHY 251 (311)
T ss_pred HHHHcCCe-EEeHHH----HHHHH-----hcCCEEEECCCCCch
Confidence 77888873 332211 22222 248999999998655
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=61.94 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=78.1
Q ss_pred hhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh----HHHHHHhcCCceEe-cCCCCCcc
Q 016933 179 GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK----RFEEAKKFGVTDFV-NTSEHDRP 253 (380)
Q Consensus 179 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~----~~~~~~~lG~~~vi-~~~~~~~~ 253 (380)
+...|. +.....+++|++||=+|+| .|+.++-+|+..| +|+.+.+.++ ....++.+|.+.|. ...+....
T Consensus 58 P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 58 PHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG 132 (209)
T ss_pred cHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 334443 3577889999999999986 4999999999888 8999999886 44446678885543 33332222
Q ss_pred HHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 254 IQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 254 ~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
| ... +||.|+-+.+.+..-..+++.|+++ |+++.-
T Consensus 133 ~-------~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~P 168 (209)
T COG2518 133 W-------PEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIP 168 (209)
T ss_pred C-------CCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEE
Confidence 2 233 8999999988877778999999997 987754
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=68.57 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=76.5
Q ss_pred hhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhC
Q 016933 185 GATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 185 ~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
..+++..+ .-.|++++|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+..+ + +.+.+
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~-~-------leell----- 307 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVV-T-------LEDVV----- 307 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceec-c-------HHHHH-----
Confidence 44444433 4578999999999999999999999999 89999888777655555676422 1 32222
Q ss_pred CCccEEEEcccChhhHH-HHHHHhhcCCcEEEEEcCCC
Q 016933 264 GGVDRSVECTGNIDNMI-SAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 264 ~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 300 (380)
...|+|+.++|....+. ..++.++++ +.++.+|...
T Consensus 308 ~~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~d 344 (476)
T PTZ00075 308 ETADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHFD 344 (476)
T ss_pred hcCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence 25899999999877775 899999997 9999998753
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=68.16 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++.+++|+|+|.+|+.+++.++.+|+ +|++++++.++.+.+.. ++........+ . +.+.+.. ..+|++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~-~----~~l~~~l-~~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN-A----YEIEDAV-KRADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC-H----HHHHHHH-ccCCEEEEcc
Confidence 34569999999999999999999999 89999999888877654 55432222221 1 1222222 2589999998
Q ss_pred c---C--hh-hHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 274 G---N--ID-NMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 274 g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
+ . +. .....++.++++ +.++.++...+
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G 271 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG 271 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence 3 2 22 246788889997 99998886543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2e-05 Score=78.96 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC---------------------ChhHHHHHHhcCCceEecCCC-
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR---------------------SSKRFEEAKKFGVTDFVNTSE- 249 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~---------------------~~~~~~~~~~lG~~~vi~~~~- 249 (380)
..++|++|+|+|+|..|+++++.++..|+ +|++++. .+.+++.++++|++..++...
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 46789999999999999999999999999 7888874 245678888999987776543
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhh
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
.+... +.+ ..++|+||+++|....
T Consensus 212 ~~~~~-~~~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 212 EDITL-EQL----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CcCCH-HHH----HhhCCEEEEeeCCCCC
Confidence 22111 111 2369999999998543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00075 Score=61.35 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++++|+|.|.+|.+.+..++.+|+ +|++++++.++.+.+.++|...+ . + +.+.+.. ..+|+|++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~-------~-~~l~~~l-~~aDiVint~P 218 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-P-------L-NKLEEKV-AEIDIVINTIP 218 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-c-------H-HHHHHHh-ccCCEEEECCC
Confidence 57899999999999999999999999 99999999988887777775422 1 1 1122222 26899999987
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCcee
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVF 305 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 305 (380)
..-.....++.++++ ..++.++...+...+
T Consensus 219 ~~ii~~~~l~~~k~~-aliIDlas~Pg~tdf 248 (287)
T TIGR02853 219 ALVLTADVLSKLPKH-AVIIDLASKPGGTDF 248 (287)
T ss_pred hHHhCHHHHhcCCCC-eEEEEeCcCCCCCCH
Confidence 532234567778886 778888776544433
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=70.76 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhcc---CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCCccH
Q 016933 179 GVSTGLGATLNVA---KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPI 254 (380)
Q Consensus 179 ~~~ta~~~l~~~~---~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~ 254 (380)
+.+.++.++.... +-.++++|+|+|+|.+|.++++.++..|+.+|++++++.++.+ +++++|.+ +++.
T Consensus 162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~------- 233 (423)
T PRK00045 162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL------- 233 (423)
T ss_pred CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH-------
Confidence 4455555542221 2257899999999999999999999999878999999988855 67778864 3322
Q ss_pred HHHHHHHhCCCccEEEEcccChhh
Q 016933 255 QEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
+.+.+.. .++|+||+|+|.+..
T Consensus 234 -~~~~~~l-~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 234 -DELPEAL-AEADIVISSTGAPHP 255 (423)
T ss_pred -HHHHHHh-ccCCEEEECCCCCCc
Confidence 1122221 268999999997643
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00075 Score=69.25 Aligned_cols=137 Identities=22% Similarity=0.267 Sum_probs=84.2
Q ss_pred ceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc
Q 016933 149 TFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 149 ~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
++.+|..+++..++++ +..+.+++.... .......+|+++||+|+ |.+|.+.++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~----------~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQR----------MPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhc----------CCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 4567777776666666 455555543110 00122346799999997 9999999999999999 899999
Q ss_pred CChhHHHHHHh-cCC--c-eE--ecCCCCCccHHHHHHHHh--CCCccEEEEcccCh-----------------------
Q 016933 228 RSSKRFEEAKK-FGV--T-DF--VNTSEHDRPIQEVIAEMT--NGGVDRSVECTGNI----------------------- 276 (380)
Q Consensus 228 ~~~~~~~~~~~-lG~--~-~v--i~~~~~~~~~~~~~~~~~--~~~~d~v~d~~g~~----------------------- 276 (380)
++.++.+.+.+ ++. . .+ .|..+.+ .+.+.+.+.. .+++|++|+++|..
T Consensus 454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~-~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g 532 (681)
T PRK08324 454 LDEEAAEAAAAELGGPDRALGVACDVTDEA-AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATG 532 (681)
T ss_pred CCHHHHHHHHHHHhccCcEEEEEecCCCHH-HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHH
Confidence 99887665543 433 1 12 2333321 1223333221 23799999999831
Q ss_pred --hhHHHHHHHhhc---CCcEEEEEcCC
Q 016933 277 --DNMISAFECVHD---GWGVAVLVGVP 299 (380)
Q Consensus 277 --~~~~~~~~~l~~---~~G~~v~~g~~ 299 (380)
..+..+++.+++ + |++++++..
T Consensus 533 ~~~l~~~~~~~l~~~~~~-g~iV~vsS~ 559 (681)
T PRK08324 533 HFLVAREAVRIMKAQGLG-GSIVFIASK 559 (681)
T ss_pred HHHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence 123444555655 4 789988764
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=55.36 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCc--eEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
++++++|+|+|++|.+++..+...|+++|+.+.|+.+|.+.+. +++.. .++.+++ +.+.+ ..+|+||+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~----~~~~~-----~~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED----LEEAL-----QEADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG----HCHHH-----HTESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH----HHHHH-----hhCCeEEE
Confidence 5789999999999999999999999988999999998876664 45332 2344433 21111 25899999
Q ss_pred cccCh
Q 016933 272 CTGNI 276 (380)
Q Consensus 272 ~~g~~ 276 (380)
|++.+
T Consensus 82 aT~~~ 86 (135)
T PF01488_consen 82 ATPSG 86 (135)
T ss_dssp -SSTT
T ss_pred ecCCC
Confidence 98874
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00045 Score=63.00 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCce-EecCCCCCccHHHHHHHHhCCCcc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTD-FVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~-vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
..++++||-+|+|. |.+++.+++ .|+.+|++++.++...+.+++. +... +..... + ......+.||
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~------~~~~~~~~fD 227 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-Y------LEQPIEGKAD 227 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-c------cccccCCCce
Confidence 45789999999876 888877766 5766999999999888777662 2211 111111 0 1111234799
Q ss_pred EEEEcccCh---hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 268 RSVECTGNI---DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 268 ~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+|+...... ..+..+.+.|+++ |.+++.|..
T Consensus 228 lVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence 998754432 3566788999997 999887754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=56.17 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=58.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC----ceEecCCCCCccHHHHHHHHhCC--Cc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV----TDFVNTSEHDRPIQEVIAEMTNG--GV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~----~~vi~~~~~~~~~~~~~~~~~~~--~~ 266 (380)
+++.++|+|+ +++|.+.+......|+ +|+.+.|..+|++.+.+ ++. ...+|..+.+ ...+.+..+... .+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~-~~~~~i~~~~~~~g~i 82 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTDRA-AVEAAIEALPEEFGRI 82 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHH-HHHHHHHHHHHhhCcc
Confidence 3578899998 9999999999999999 99999999999887755 773 1234444432 244445544444 69
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+.++..|-
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999999885
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=58.77 Aligned_cols=102 Identities=23% Similarity=0.276 Sum_probs=72.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
.+...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.+++ .|.+.+..... + ..+....
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-D--~~~~~~~-- 146 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-D--GYYGVPE-- 146 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-C--hhhcccc--
Confidence 455678899999999997 59999999998763 379999999987666554 66654432221 2 2111111
Q ss_pred CCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+.+|+|+.+.+.......+.+.++++ |+++..
T Consensus 147 ~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence 136999999888766677889999997 987763
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=60.24 Aligned_cols=110 Identities=22% Similarity=0.241 Sum_probs=76.1
Q ss_pred hhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHH
Q 016933 179 GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVI 258 (380)
Q Consensus 179 ~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~ 258 (380)
+-...+..+.+..++++|++||-+|+| .|.+++.+++..|+ +|++++.+++..+.+++.....-+.....+ +.
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D--~~--- 223 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRLQD--YR--- 223 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEECc--hh---
Confidence 344455555677788999999999985 57788889988898 999999999999998874432111111111 21
Q ss_pred HHHhCCCccEEEEc-----ccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 259 AEMTNGGVDRSVEC-----TGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 259 ~~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+ .+.+|.|+.. +|. ...+..+.+.|+|+ |.+++...
T Consensus 224 -~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~i 268 (383)
T PRK11705 224 -DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHTI 268 (383)
T ss_pred -hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 11 3478988643 333 24678889999997 99887644
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0048 Score=52.94 Aligned_cols=102 Identities=21% Similarity=0.420 Sum_probs=70.0
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cC-CceEecCCCCCccHHHHHHHHh
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FG-VTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG-~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
....+.++++||-+|+|. |.+++.+|+..+. .+|++++.+++..+.+++ +| .+.+..... + ..+.+...
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-d--~~~~l~~~- 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-E--APEILFTI- 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-c--hhhhHhhc-
Confidence 345788999999999987 8999999987642 389999999998886653 56 333221111 1 22222222
Q ss_pred CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+.+|.||...+. ...+..+.+.|+++ |+++..
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID 144 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence 2479999986543 34677888899997 998753
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0072 Score=54.61 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=54.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v~d~ 272 (380)
+++||+|+ |.+|...++.+...|+ +|++++++.++.+.+.+.+...+ .|..+.+ .+.+.+.... .+++|+++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~~id~vi~~ 79 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVNDGA-ALARLAEELEAEHGGLDVLINN 79 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCCHH-HHHHHHHHHHHhcCCCCEEEEC
Confidence 47899997 9999999998888899 89999999888777766665433 3444322 2333333332 2379999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 80 ag~ 82 (274)
T PRK05693 80 AGY 82 (274)
T ss_pred CCC
Confidence 983
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0033 Score=57.02 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=56.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHH---HHhCCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIA---EMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~---~~~~~~~d~v 269 (380)
.++++||+|+ |.+|...++.....|+ +|++++++.++.+.+.+.+.+.+ .|..+.+ .+.+.+. +...+.+|++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~-~~~~~~~~~~~~~~g~id~l 80 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAEPE-SIAALVAQVLELSGGRLDAL 80 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCCHH-HHHHHHHHHHHHcCCCccEE
Confidence 4578999998 9999999888888899 89999999988887777665443 3443322 1222232 2333579999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 81 i~~Ag~ 86 (277)
T PRK05993 81 FNNGAY 86 (277)
T ss_pred EECCCc
Confidence 998763
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0078 Score=54.35 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=55.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v~ 270 (380)
++++++|+|+ |.+|...+..+...|+ +|++++++.++.+.+.+.+...+ .|..+.+ .+.+.+++.. .+++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTDEA-SIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCCHH-HHHHHHHHHHHhcCCCCEEE
Confidence 3678999997 9999999998888899 89999999888776655555332 3443322 2333333322 23799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 80 ~~ag~ 84 (273)
T PRK06182 80 NNAGY 84 (273)
T ss_pred ECCCc
Confidence 99874
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.011 Score=52.09 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=66.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-Hhc---CCceEecCCCCC-ccHHHHHHHHhC--CCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKF---GVTDFVNTSEHD-RPIQEVIAEMTN--GGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~l---G~~~vi~~~~~~-~~~~~~~~~~~~--~~~ 266 (380)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +++ +.-+.+..+-.+ ..+.+.+++... +++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4689999997 9999999999999999 899999988877655 222 222222222111 112222222211 368
Q ss_pred cEEEEcccChh-----------------------hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 267 DRSVECTGNID-----------------------NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 267 d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
|.++.+.|... .+...++.+.++ |+++.++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~ 138 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS 138 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence 99999887421 134555666776 8898887653
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=52.93 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=66.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec-CCCC--------------CccHHHHHHH
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN-TSEH--------------DRPIQEVIAE 260 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~-~~~~--------------~~~~~~~~~~ 260 (380)
..+|+|+|+|.+|..|+.+++.+|+ +++..+...++.+..+..++..+.. +.+. .......+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 3789999999999999999999999 8999999999999888888755432 1111 1112222222
Q ss_pred HhCCCccEEEEcccC-----hh-hHHHHHHHhhcCCcEEEEEcCC
Q 016933 261 MTNGGVDRSVECTGN-----ID-NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~-----~~-~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
... .+|+++-+.-- +. .....++.|+++ ..++.+..-
T Consensus 99 ~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D 141 (168)
T PF01262_consen 99 FIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD 141 (168)
T ss_dssp HHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred HHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence 222 47888854321 11 245788889986 777777543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0096 Score=50.13 Aligned_cols=93 Identities=23% Similarity=0.311 Sum_probs=63.8
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC--
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN-- 275 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-- 275 (380)
|+|+|+ |.+|...++.+...|. +|+++.+++++.+. ..+.+.+ ..+-.+ . +.+.+... ++|+||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~-~~d~~d--~-~~~~~al~-~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEII-QGDLFD--P-DSVKAALK-GADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEE-ESCTTC--H-HHHHHHHT-TSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccc-eeeehh--h-hhhhhhhh-hcchhhhhhhhhc
Confidence 789998 9999999999999998 99999999998876 4455433 233333 2 23444333 69999999984
Q ss_pred --hhhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 276 --IDNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 276 --~~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.......++.++.. -.+++.++..
T Consensus 73 ~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 73 KDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp THHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred ccccccccccccccccccccceeeecc
Confidence 23455666666553 1367766543
|
... |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0099 Score=50.27 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=59.9
Q ss_pred CCCCeEEEEcC--CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-EecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 194 ERGSSVAVFGL--GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-FVNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 194 ~~g~~vlI~G~--g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-vi~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
...+.|||+|+ |++|++.+.--...|+ .|+++.++.++.+.+. ++|... =+|..+++ ..+...++..+.|+.|
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 34578999974 9999987777777899 9999999998887776 778633 35555543 2345556666667899
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+.++..|.
T Consensus 84 ~L~NNAG~ 91 (289)
T KOG1209|consen 84 LLYNNAGQ 91 (289)
T ss_pred EEEcCCCC
Confidence 99998775
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0059 Score=51.36 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=57.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC---ceEecCCCCC--ccHHHHHHHHhCCCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV---TDFVNTSEHD--RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~---~~vi~~~~~~--~~~~~~~~~~~~~~~d~ 268 (380)
.|.+|||+|+ +++|++.++--..+|= +||...|++++++.+++.-. ..|.|..+.+ ..+.+.++...+ ..++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNv 81 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNV 81 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chhe
Confidence 4789999975 9999988888888887 99999999999999988544 2355555433 224444443322 5789
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|-
T Consensus 82 liNNAGI 88 (245)
T COG3967 82 LINNAGI 88 (245)
T ss_pred eeecccc
Confidence 9998874
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0078 Score=50.67 Aligned_cols=90 Identities=31% Similarity=0.387 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...+++++.+|+ +|++.+++....+...+.+... .+ +.+.+++ .|+|+.+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~----~~----l~ell~~-----aDiv~~~~ 99 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY----VS----LDELLAQ-----ADIVSLHL 99 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE----SS----HHHHHHH------SEEEE-S
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee----ee----hhhhcch-----hhhhhhhh
Confidence 468999999999999999999999999 9999999888776555555521 11 4443433 68988877
Q ss_pred cChh-----hHHHHHHHhhcCCcEEEEEcC
Q 016933 274 GNID-----NMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~~-----~~~~~~~~l~~~~G~~v~~g~ 298 (380)
...+ .-...++.++++ ..+|.++-
T Consensus 100 plt~~T~~li~~~~l~~mk~g-a~lvN~aR 128 (178)
T PF02826_consen 100 PLTPETRGLINAEFLAKMKPG-AVLVNVAR 128 (178)
T ss_dssp SSSTTTTTSBSHHHHHTSTTT-EEEEESSS
T ss_pred ccccccceeeeeeeeeccccc-eEEEeccc
Confidence 6322 133677888886 77766643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0024 Score=55.06 Aligned_cols=104 Identities=23% Similarity=0.343 Sum_probs=68.4
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHH----hcCCceE-ecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAK----KFGVTDF-VNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~----~lG~~~v-i~~~~~~~~~~~~~~~ 260 (380)
+.+...+++|++||-+|+| .|+.++-+|+..|.. +|+++++.++-.+.++ .+|.+.| +...+....+.
T Consensus 64 ~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~----- 137 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP----- 137 (209)
T ss_dssp HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----
T ss_pred HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----
Confidence 4566779999999999986 488899999988743 6999998886555444 4566543 22222111110
Q ss_pred HhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEE-EcC
Q 016933 261 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVL-VGV 298 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~-~g~ 298 (380)
..++||.|+-+.+.+..-..+++.|+++ |+++. ++.
T Consensus 138 -~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~pi~~ 174 (209)
T PF01135_consen 138 -EEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAPIGQ 174 (209)
T ss_dssp -GG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEEESS
T ss_pred -cCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEEEcc
Confidence 1237999999888877778999999997 99886 443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.014 Score=48.56 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=70.6
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
...++++|+.++=+|+| .|..++++|...-..+|+++++++++.++.+. ||.+.+...... -.+.+..+.
T Consensus 28 s~L~~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~---Ap~~L~~~~-- 101 (187)
T COG2242 28 SKLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD---APEALPDLP-- 101 (187)
T ss_pred HhhCCCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc---chHhhcCCC--
Confidence 34568899966667875 36677788855544499999999999888754 887754322221 112222211
Q ss_pred CccEEEEcccC--hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 265 GVDRSVECTGN--IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 265 ~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+|.+|---|. +..++.++..|+++ |++|.-..+
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait 137 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT 137 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence 58999876553 24688999999997 999877654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.032 Score=48.99 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=62.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHH-HHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEE-AKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~-~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
+++++||+|+ |.+|...++.+...|+ +|+.+.+ ++++.+. ..+++...+ .|..+. ..+.+.+... +++|+++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~-~~~~~~~~~~--~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSADR-DAVIDVVRKS--GALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCCH-HHHHHHHHHh--CCCcEEE
Confidence 4689999997 9999999998888999 6766544 4444433 345565432 232221 1233333321 3699999
Q ss_pred EcccChh-------------------------hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 271 ECTGNID-------------------------NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 271 d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
++.|... ....+...+... |+++.++...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~ 134 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSVN 134 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEeccc
Confidence 9987521 012344455665 8998887643
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0098 Score=53.26 Aligned_cols=98 Identities=20% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
..+|.|+|+|.+|.-|+.+|--+|+ +|+.++.+.+|+..+.++-..++-........+.+.++ +.|+++.++=-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~-----~aDlvIgaVLI 241 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVK-----KADLVIGAVLI 241 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhh-----hccEEEEEEEe
Confidence 3567788999999999999999999 99999999999999988554443322232222444332 47999887532
Q ss_pred h-----h-hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 276 I-----D-NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 276 ~-----~-~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+ . ...++++.|+|+ +.++.+..-.
T Consensus 242 pgakaPkLvt~e~vk~MkpG-sVivDVAiDq 271 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPG-SVIVDVAIDQ 271 (371)
T ss_pred cCCCCceehhHHHHHhcCCC-cEEEEEEEcC
Confidence 1 1 366889999997 9999887654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.024 Score=48.20 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=62.0
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCC-Cc
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNG-GV 266 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~-~~ 266 (380)
...+++|++||.+|+|.-+. +..+++.. +..+|++++.++.+ +..++..+ .+..+. ...+.+.+..+. ++
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~--~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDE--EVLNKIRERVGDDKV 99 (188)
T ss_pred hcccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCCh--hHHHHHHHHhCCCCc
Confidence 35578999999999875444 44444443 44489999998864 11233322 122222 244455554444 79
Q ss_pred cEEEE-c----ccC------------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVE-C----TGN------------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d-~----~g~------------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+. . .|. ...+..+.+.|+++ |++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence 99995 2 121 24677889999997 9988754
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.036 Score=48.70 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC---ceEe--cCCCCCccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV---TDFV--NTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~---~~vi--~~~~~~~~~~~~~~~~~~--~~ 265 (380)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +++.. -+.+ |..+. ..+.+.+++... ++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDE-ADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCH-HHHHHHHHHHHHHcCC
Confidence 3688999997 9999998888877899 899998888765444 33321 1122 22221 123333333321 37
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 83 ~d~vi~~ag~ 92 (237)
T PRK07326 83 LDVLIANAGV 92 (237)
T ss_pred CCEEEECCCC
Confidence 9999998764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.021 Score=49.58 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=69.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceE--ecCCCCCccHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHDRPIQEVIA 259 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~~~~~~~~~ 259 (380)
+.....++++++||-+|+| .|..++.+++..+. .+|++++.+++-.+.+++ .|...+ +.-+... .+
T Consensus 68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~----- 140 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GY----- 140 (212)
T ss_pred HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CC-----
Confidence 3456678999999999876 37778888887753 389999999988776655 454322 2111110 01
Q ss_pred HHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
...+.||+|+-..........+.+.|+++ |++++.
T Consensus 141 -~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~ 175 (212)
T PRK13942 141 -EENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP 175 (212)
T ss_pred -CcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence 01237999976655556778899999997 998764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.059 Score=42.68 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec-CCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN-TSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~-~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.++.+++++|.| .|...+..+...|. .|++++.+++..+.+++.+.+.+.+ .-+++..+ -+++|+|+..
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~--------y~~a~liysi 84 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI--------YKNAKLIYSI 84 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH--------HhcCCEEEEe
Confidence 456789999998 78644444456898 9999999999999999988765542 22222112 1278999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEE
Q 016933 273 TGNIDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v 294 (380)
-..++....+++..+.- +.-.
T Consensus 85 rpp~el~~~~~~la~~~-~~~~ 105 (134)
T PRK04148 85 RPPRDLQPFILELAKKI-NVPL 105 (134)
T ss_pred CCCHHHHHHHHHHHHHc-CCCE
Confidence 88878777777777774 4433
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0058 Score=55.10 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=63.4
Q ss_pred hhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E-ecCCCCCccHHHHHH
Q 016933 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F-VNTSEHDRPIQEVIA 259 (380)
Q Consensus 186 ~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v-i~~~~~~~~~~~~~~ 259 (380)
.+.+.+++++|++||-+|+| -|.+++.+|+..|+ +|++++.|++..+.+++ .|... + +...+ + +
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D----~----~ 122 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQD----Y----R 122 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-----G----G
T ss_pred HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee----c----c
Confidence 34678899999999999987 57778889998899 99999999998887754 55422 1 11111 1 1
Q ss_pred HHhCCCccEEEE-----cccC---hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 260 EMTNGGVDRSVE-----CTGN---IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 260 ~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++ .+.||.|+. .+|. +..+..+.+.|+|+ |++++-...
T Consensus 123 ~~-~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i~ 168 (273)
T PF02353_consen 123 DL-PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTIT 168 (273)
T ss_dssp G----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEEE
T ss_pred cc-CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEecc
Confidence 11 127888765 3443 24588899999997 998765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.019 Score=50.65 Aligned_cols=77 Identities=26% Similarity=0.462 Sum_probs=52.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceE-ecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
++++++|+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ .+...+ .|..+.+ .+.+.+.. .+++|++|+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~--~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGDDA-AIRAALAA--AGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCCHH-HHHHHHHH--hCCCCEEEE
Confidence 4678999997 9999999999998999 89999898877655543 454332 2333321 12222222 236899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 84 ~ag~ 87 (245)
T PRK07060 84 CAGI 87 (245)
T ss_pred CCCC
Confidence 9874
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=51.75 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=55.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCC--ccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHD--RPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~--~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+++||+|+ |.+|...++.+...|+ +|++++++.++.+.+++.+++.+ .|..+.+ .++.+.+.....+.+|.++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 57999998 9999999999988899 89999999998888887776543 3433321 112233333333578999988
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 82 ag~ 84 (256)
T PRK08017 82 AGF 84 (256)
T ss_pred CCC
Confidence 763
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.059 Score=53.34 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=66.7
Q ss_pred hccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---------cCCc-----eE--ecCCCCC
Q 016933 189 NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---------FGVT-----DF--VNTSEHD 251 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---------lG~~-----~v--i~~~~~~ 251 (380)
...+.+.|++|||+|+ |.+|...+..+...|+ +|+++.++.++.+.+.+ .|.. .+ .|..+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-- 149 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-- 149 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence 4556778999999998 9999999988888899 89888898887654322 1211 12 23322
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChh---------------hHHHHHHHhhcC-CcEEEEEcCCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNID---------------NMISAFECVHDG-WGVAVLVGVPS 300 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~---------------~~~~~~~~l~~~-~G~~v~~g~~~ 300 (380)
. +.+.+.. +++|+||+++|... ....+++.+... .++||+++...
T Consensus 150 --~-esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 150 --P-DQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred --H-HHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 1 2233333 36899999987531 122334444332 26888887653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.027 Score=50.89 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
+++|.++|=+|+| .|.++|..+| +|+.+|++++.++-..+.+++ -+.+... ... .........++.+|+
T Consensus 160 ~~~g~~vlDvGcG-SGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~-~~~----~~~~~~~~~~~~~Dv 232 (300)
T COG2264 160 LKKGKTVLDVGCG-SGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLV-QAK----GFLLLEVPENGPFDV 232 (300)
T ss_pred hcCCCEEEEecCC-hhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhh-hcc----cccchhhcccCcccE
Confidence 5688888888875 3666666555 788899999999977766655 2332100 000 001111122347999
Q ss_pred EEEcccCh---hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 269 SVECTGNI---DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 269 v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
|+-.+=.. .+......+++|+ |++++.|...
T Consensus 233 IVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl~ 266 (300)
T COG2264 233 IVANILAEVLVELAPDIKRLLKPG-GRLILSGILE 266 (300)
T ss_pred EEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeehH
Confidence 88654221 3466788889997 9999998754
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=51.27 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=55.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCce-E--ecCCCCCccHHHHHHH-HhC
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTD-F--VNTSEHDRPIQEVIAE-MTN 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~-v--i~~~~~~~~~~~~~~~-~~~ 263 (380)
..+.++||+|| +++|...+......|+ .++.+.|+++|++.+.+ .|... + +|..+.+ -.+.+.. +..
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~--~~~~l~~~l~~ 80 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPE--ALERLEDELKE 80 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChh--HHHHHHHHHHh
Confidence 46789999998 9999998888888899 89999999999877754 22221 3 3444433 2233332 222
Q ss_pred C--CccEEEEcccC
Q 016933 264 G--GVDRSVECTGN 275 (380)
Q Consensus 264 ~--~~d~v~d~~g~ 275 (380)
. .+|+.++++|-
T Consensus 81 ~~~~IdvLVNNAG~ 94 (265)
T COG0300 81 RGGPIDVLVNNAGF 94 (265)
T ss_pred cCCcccEEEECCCc
Confidence 2 79999999985
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.029 Score=43.68 Aligned_cols=101 Identities=19% Similarity=0.331 Sum_probs=67.1
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--ecCCCCCccHHHHHHHHh
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~~~~~~~~~~~~ 262 (380)
....+.+++++|-+|+|. |..+..+++..+..+|++++.++...+.+++ ++...+ +..+... . ... .
T Consensus 13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~---~~~-~ 85 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE--A---LED-S 85 (124)
T ss_pred HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc--c---Chh-h
Confidence 344567788888899876 8888899988754499999999988877654 444322 2111110 0 111 1
Q ss_pred CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEc
Q 016933 263 NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 263 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+.+|+|+-..+. ...+..+.+.|+++ |.+++..
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~ 122 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLNA 122 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEEe
Confidence 2379999875432 24688899999997 9988653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.1 Score=44.98 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh-HHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK-RFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~-~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.|++|||+|+|.+|..-+..+...|+ .|++++.... ....+.+.|--..+ ..+... . .+ .++++||-++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~-~~~~~~---~---dl--~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWL-ARCFDA---D---IL--EGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEE-eCCCCH---H---Hh--CCcEEEEECC
Confidence 46799999999999999999999999 8888865432 33333333311111 112110 1 11 3689999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
+.++.-.......+.. |..+.+........+.++..--...+++--+
T Consensus 78 ~d~~ln~~i~~~a~~~-~ilvn~~d~~e~~~f~~pa~~~~g~l~iais 124 (205)
T TIGR01470 78 DDEELNRRVAHAARAR-GVPVNVVDDPELCSFIFPSIVDRSPVVVAIS 124 (205)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence 9865555666666664 7777655544344455443322244555433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.038 Score=45.21 Aligned_cols=92 Identities=28% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.-.|++++|.|-|.+|.-.++.++.+|+ +|++++.++-+.-.+.--|.. +.. +.+.+ ...|++|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~~-------~~~a~-----~~adi~vta 85 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VMT-------LEEAL-----RDADIFVTA 85 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE--------HHHHT-----TT-SEEEE-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ecC-------HHHHH-----hhCCEEEEC
Confidence 4578999999999999999999999999 999999999776666556654 221 22222 257999999
Q ss_pred ccChhh-HHHHHHHhhcCCcEEEEEcCC
Q 016933 273 TGNIDN-MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 273 ~g~~~~-~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+|..+. ..+-++.|+++ -.+..+|..
T Consensus 86 TG~~~vi~~e~~~~mkdg-ail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDG-AILANAGHF 112 (162)
T ss_dssp SSSSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred CCCccccCHHHHHHhcCC-eEEeccCcC
Confidence 998664 45778888885 555555544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.018 Score=50.24 Aligned_cols=77 Identities=9% Similarity=0.181 Sum_probs=51.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE--ecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF--VNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v--i~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++++|+|+ |.+|...+......|+ +|+++++++++.+.+++++-..+ .|..+. ..+.+.++.+..+++|++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMNDP-ASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCCH-HHHHHHHHHhhcCCCCEEEEcC
Confidence 46899997 9999998887778899 89999998877766655433222 232222 1233334444334799999987
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 80 g~ 81 (225)
T PRK08177 80 GI 81 (225)
T ss_pred cc
Confidence 64
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.092 Score=45.13 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh-H-HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK-R-FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~-~-~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.|.+|||+|+|.+|...+..+...|+ +|++++.... . .+++.+ +. ..+...... + ..-.++|+||-+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~-i~~~~~~~~----~----~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GK-IRWKQKEFE----P----SDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CC-EEEEecCCC----h----hhcCCceEEEEc
Confidence 46899999999999998888888898 8888865431 2 222222 21 111111111 0 001268999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
++.+ .++..+...... +.++.+........+.++...-...+++--+
T Consensus 78 T~d~-elN~~i~~~a~~-~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIs 124 (202)
T PRK06718 78 TNDP-RVNEQVKEDLPE-NALFNVITDAESGNVVFPSALHRGKLTISVS 124 (202)
T ss_pred CCCH-HHHHHHHHHHHh-CCcEEECCCCccCeEEEeeEEEcCCeEEEEE
Confidence 9985 445555555454 6666665544344454443322244555443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0094 Score=45.67 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-cCCcEEEEEcCChhHHHHHHhcC----C-ceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARI-AGASRIIGVDRSSKRFEEAKKFG----V-TDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~-~g~~~vi~~~~~~~~~~~~~~lG----~-~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
|+++||-+|+|. |.+++.+++. .++ +|++++.+++..+.+++.- . +.+- ....+ + . ......++||+
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~~d--~-~-~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRIT-FVQGD--A-E-FDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEE-EEESC--C-H-GGTTTSSCEEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeE-EEECc--c-c-cCcccCCCCCE
Confidence 678999999864 7788888884 677 8999999999888887632 2 2221 11111 2 0 01111237999
Q ss_pred EEEcc-cC---hh------hHHHHHHHhhcCCcEEEEE
Q 016933 269 SVECT-GN---ID------NMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 269 v~d~~-g~---~~------~~~~~~~~l~~~~G~~v~~ 296 (380)
|+... .. .. .+..+.+.|+|+ |++++-
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi~ 110 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVIN 110 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEEE
Confidence 98876 22 12 378899999997 998753
|
... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.025 Score=48.76 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=66.9
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCc---eEecCCCCCccHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVT---DFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~---~vi~~~~~~~~~~~~~~ 259 (380)
.+...++++++||=+|+|. |..++.+++..+ ..+|++++.+++-.+.+++ .|.. .++..+-. +.+.
T Consensus 65 ~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~-----~~~~ 138 (205)
T PRK13944 65 CELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK-----RGLE 138 (205)
T ss_pred HHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc-----cCCc
Confidence 4556778999999998763 777788888764 2389999999987766654 4432 12221111 1011
Q ss_pred HHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
..+.||+|+-..........+.+.|+++ |+++..
T Consensus 139 --~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~ 172 (205)
T PRK13944 139 --KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP 172 (205)
T ss_pred --cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence 1237999987766556667888999997 998764
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.014 Score=55.88 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.+.++||+|+|.+|.+++..+...|+..++++.++.+|.+.+ .+++...++. + +.+.+.. ..+|+||.|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~-------~-~~l~~~l-~~aDiVI~a 249 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY-------L-SELPQLI-KKADIIIAA 249 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEec-------H-HHHHHHh-ccCCEEEEC
Confidence 4578999999999999999999999987899999998775554 4455212322 2 2222222 258999999
Q ss_pred ccChhh
Q 016933 273 TGNIDN 278 (380)
Q Consensus 273 ~g~~~~ 278 (380)
++.+..
T Consensus 250 T~a~~~ 255 (414)
T PRK13940 250 VNVLEY 255 (414)
T ss_pred cCCCCe
Confidence 998654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.037 Score=52.02 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=64.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC---Cc-eEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG---VT-DFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG---~~-~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.+|||+|+|.+|+.+++.+-+.|..+|+..+++.++.+.+.+.. .. ..+|..+.+ ++.++.. ++|+||++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~-----al~~li~-~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD-----ALVALIK-DFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChH-----HHHHHHh-cCCEEEEe
Confidence 57999999999999999988888459999999999998887764 21 234444422 2333333 35999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.........+-.|++.+ -.++....
T Consensus 76 ~p~~~~~~i~ka~i~~g-v~yvDts~ 100 (389)
T COG1748 76 APPFVDLTILKACIKTG-VDYVDTSY 100 (389)
T ss_pred CCchhhHHHHHHHHHhC-CCEEEccc
Confidence 98755554444555553 44554444
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.018 Score=53.66 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=53.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++.|.+. + .|..+.+ ..+.+.+.+. .+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF-GG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh-cC
Confidence 4689999998 9999999999988999 898998988876543 3456543 2 2333322 1122222222 24
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.025 Score=50.84 Aligned_cols=106 Identities=22% Similarity=0.313 Sum_probs=66.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E----ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F----VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v----i~~~~~~~~~~~~~~~~~-- 262 (380)
.++.|+|+|| +++|.+.+.-.-..|+ +++.+.+..++++.+ ++.+... + .|..+.+ ...+.+.+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~-~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEE-SVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHH-HHHHHHHHHHHh
Confidence 5689999998 8999887766667898 666666777666555 4455433 2 2333322 1222222211
Q ss_pred CCCccEEEEcccCh-------------------------hhHHHHHHHhhcCC-cEEEEEcCCCCC
Q 016933 263 NGGVDRSVECTGNI-------------------------DNMISAFECVHDGW-GVAVLVGVPSKD 302 (380)
Q Consensus 263 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~~ 302 (380)
-+++|+.++..|-. .....++..|++.. |+|+.++...+-
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~ 154 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK 154 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence 24799999988742 23456666776644 899998876543
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=55.73 Aligned_cols=73 Identities=25% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+.++++|+|+|.|..|++++.+++..|+ +|++.+..+.+.+.++++|+..+. .... .+.+ ..+|+|+.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~~-~~~~----~~~l-----~~~D~VV~S 77 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATVS-TSDA----VQQI-----ADYALVVTS 77 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEEc-Ccch----HhHh-----hcCCEEEEC
Confidence 5578999999999999999999999999 899999877777777778874432 2111 1111 147999999
Q ss_pred ccCh
Q 016933 273 TGNI 276 (380)
Q Consensus 273 ~g~~ 276 (380)
.|.+
T Consensus 78 pGi~ 81 (488)
T PRK03369 78 PGFR 81 (488)
T ss_pred CCCC
Confidence 8875
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.038 Score=45.87 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=62.4
Q ss_pred hhcchhhhhhhhhhhhccCCCCCCeEEEEcCCH-HHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 174 CILSCGVSTGLGATLNVAKPERGSSVAVFGLGA-VGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~-~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
...||....+...+.+...--.+++|||+|+|. +|..++..++..|+ +|+++.++.+.
T Consensus 22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~-------------------- 80 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKN-------------------- 80 (168)
T ss_pred CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchh--------------------
Confidence 344544444444333333345789999999986 59989999988999 78877665211
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.++ .+|+||.+++.+..+.. +.++++ -.++.++.+.
T Consensus 81 -l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~pr 119 (168)
T cd01080 81 -LKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGINR 119 (168)
T ss_pred -HHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCCC
Confidence 222221 48999999999664433 345664 6666776654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.032 Score=49.91 Aligned_cols=131 Identities=20% Similarity=0.150 Sum_probs=86.9
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC---------CccHHHHHHH
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH---------DRPIQEVIAE 260 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~---------~~~~~~~~~~ 260 (380)
.+...++..+++.|.|..|+.++..++.+|+ .|...+-...+.+..+.+|+...-..++. +.+|...-.+
T Consensus 158 Aagtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 158 AAGTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred hcccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence 3445567788999999999999999999999 88888888888888888998543211211 1234433333
Q ss_pred HhC---CCccEEEEcccCh-----h-hHHHHHHHhhcCCcEEEEEcCCCCCce-eecccccc-ccccEEEeee
Q 016933 261 MTN---GGVDRSVECTGNI-----D-NMISAFECVHDGWGVAVLVGVPSKDAV-FMTKPINV-LNERTLKGTF 322 (380)
Q Consensus 261 ~~~---~~~d~v~d~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~-~~~~~i~g~~ 322 (380)
+.. .++|+||-+.=-| . ....++..++|+ ..++.+....+... ...+.... .+..+|.|..
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~ 308 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT 308 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence 222 2799999886332 1 356899999997 99998876543322 22222112 2677888854
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.053 Score=46.87 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEe-cCCCCCccHHHHHHHHhC
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFV-NTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi-~~~~~~~~~~~~~~~~~~ 263 (380)
.++.++.++||=+|.+ +|+.++++|..+. -.++++++.++++.+.+++ .|.+..+ -....+ ..+.+.+...
T Consensus 54 L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd--al~~l~~~~~ 130 (219)
T COG4122 54 LARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD--ALDVLSRLLD 130 (219)
T ss_pred HHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc--HHHHHHhccC
Confidence 4556677888888753 5889999999886 3389999999999888765 6765522 111122 5666666444
Q ss_pred CCccEEEEccc---ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTG---NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.||.||-=.. .++.++.+++.|+++ |.++.-...
T Consensus 131 ~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DNvl 168 (219)
T COG4122 131 GSFDLVFIDADKADYPEYLERALPLLRPG-GLIVADNVL 168 (219)
T ss_pred CCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEeecc
Confidence 58999864333 356799999999997 888766544
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.032 Score=49.74 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=52.7
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC-ceEe--cCCCCCccHHHHHHHHh--C
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV-TDFV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~-~~vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
..++++||+|+ |.+|...+..+...|+ +|+++.++.++.+.+.+ .+. ..++ |..+. ..+.+.+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDY-QSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH-HHHHHHHHHHHHhc
Confidence 34789999997 9999999999888999 89999898887654433 122 1222 33222 12333333321 2
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 378999999884
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.1 Score=46.10 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |.+|...+......|+ +|+++++++++.+.+ ++.+... ++ |..+.+ .+.+.+..... +
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPA-SVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH-HHHHHHHHHHHHcC
Confidence 4688999997 9999999988888899 888888887755433 2234322 22 333221 12222222111 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.++|.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 79999999885
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.068 Score=49.91 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ .+.+.+..... +
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~-~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAE-AVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHH-HHHHHHHHHHHHCC
Confidence 4678999997 9999999988888899 888888988776543 33454332 2333321 12222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.099 Score=42.94 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|||+|+|.+|.--++.....|+ .|++++ ++..+.+++++.-. +...... + ..-.++|+|+-+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~~~----~----~dl~~a~lViaaT~ 79 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKTFS----N----DDIKDAHLIYAATN 79 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecccC----h----hcCCCceEEEECCC
Confidence 46889999999999988888878899 787773 33333444454211 2111111 0 01126899999998
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
. +-++..+...... +.++.+........+.++..--...+++--+
T Consensus 80 d-~e~N~~i~~~a~~-~~~vn~~d~~~~~~f~~pa~v~~~~l~iais 124 (157)
T PRK06719 80 Q-HAVNMMVKQAAHD-FQWVNVVSDGTESSFHTPGVIRNDEYVVTIS 124 (157)
T ss_pred C-HHHHHHHHHHHHH-CCcEEECCCCCcCcEEeeeEEEECCeEEEEE
Confidence 8 4456555555554 4344443333233444333211234444433
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=49.62 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v 269 (380)
+++++||+|+ |.+|...++.....|+ +|+.+++++.+.+.+ .+++...+ .|..+.+ .+.+.+.... .+++|++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTDED-AVNALFDTAAETYGSVDIA 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHH-HHHHHHHHHHHHcCCCCEE
Confidence 4689999998 9999999998888899 898888887765544 44544222 2333321 1222232221 1368999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06057 84 FNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.064 Score=52.28 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh--hHH-HHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS--KRF-EEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~--~~~-~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++. ++. +..++++...+ .|..+.+ ...+.+.... .+++|
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITAPD-APARIAEHLAERHGGLD 286 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHH-HHHHHHHHHHHhCCCCC
Confidence 5789999997 9999999998888899 888887643 222 33344565332 3443322 1222222221 23699
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 287 ~vi~~AG~ 294 (450)
T PRK08261 287 IVVHNAGI 294 (450)
T ss_pred EEEECCCc
Confidence 99999883
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.031 Score=49.04 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH-H---HHhcCCceE-ecCCCCCccHHHHHHHHhC--CCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE-E---AKKFGVTDF-VNTSEHDRPIQEVIAEMTN--GGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~---~~~lG~~~v-i~~~~~~~~~~~~~~~~~~--~~~ 266 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++.. . ++..+...+ .|..+. ..+.+.+..... +++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDP-QAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCH-HHHHHHHHHHHHHhCCc
Confidence 3689999997 9999998888888899 8999988765532 2 222333322 222221 112222222211 379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 84 d~vi~~ag~ 92 (239)
T PRK12828 84 DALVNIAGA 92 (239)
T ss_pred CEEEECCcc
Confidence 999998874
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.025 Score=55.43 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh---------------------hHHHHHHhcCCceEecCCCCCc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS---------------------KRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~---------------------~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
..+++|+|+|+|..|+.++..++..|+ .|+.++..+ ...++++++|++..++......
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence 367899999999999999999999999 788886553 3467788899876555422110
Q ss_pred cHHHHHHHHhCCCccEEEEcccChh
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
+ .+.... .++|.||.++|...
T Consensus 218 -~--~~~~~~-~~~D~vilAtGa~~ 238 (467)
T TIGR01318 218 -I--SLDDLL-EDYDAVFLGVGTYR 238 (467)
T ss_pred -c--CHHHHH-hcCCEEEEEeCCCC
Confidence 1 111222 26999999999753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.28 Score=42.89 Aligned_cols=97 Identities=23% Similarity=0.172 Sum_probs=62.8
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCC
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
...++++++||-.|+|. |..++.+++. ++.+|++++.+++..+.+++ .+....+...+ +.+. ...+.
T Consensus 31 ~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d----~~~~---~~~~~ 101 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD----WARA---VEFRP 101 (223)
T ss_pred hcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc----hhhh---ccCCC
Confidence 34577889999999876 8888888875 55589999999988876654 34322221111 2221 12247
Q ss_pred ccEEEEcccC---------------------------hhhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSVECTGN---------------------------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+|+..... ...+..+.+.|+++ |+++++
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~ 158 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLV 158 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 9998864210 01345677888997 998865
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.091 Score=47.02 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-E--ecCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-F--VNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ ++++... + .|..+.+ .+.+.+.... -+.+|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDA-AIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHH-HHHHHHHHHHHHhCCCC
Confidence 4679999997 9999998888888899 899998988765444 4455321 2 2333321 1223232221 13689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.086 Score=46.64 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-HHHH----HHhcCCce-E--ecCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-RFEE----AKKFGVTD-F--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-~~~~----~~~lG~~~-v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
+++++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+. ++..+... . .|..+.+ .+.+.+.+...
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEE-SVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHhC
Confidence 3578999997 9999999888888899 7888777543 3322 22233321 2 2333221 23333333222
Q ss_pred CCccEEEEcccCh-------------------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRSVECTGNI-------------------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+++|+++.+.|.. ..+..+.+.+... |+++.++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 3689999887642 1234444444554 78887765
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=45.98 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=51.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cC-Cc-e--EecCCCCCccHHHHHHHHh---CCCcc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FG-VT-D--FVNTSEHDRPIQEVIAEMT---NGGVD 267 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG-~~-~--vi~~~~~~~~~~~~~~~~~---~~~~d 267 (380)
+++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ ++ .. . ..|..+.+ .+.+.+.... .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRA-AWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHH-HHHHHHHHHHHHcCCCCC
Confidence 47999997 9999999888888899 89999898887765544 32 11 1 23443322 2333333321 34799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99999885
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.049 Score=41.23 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|||+|+|.+|..-++.+...|+ +|++++... +..+ +.-... ... +.+. -.++++||-+.+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~~~----~~~~-----l~~~~lV~~at~ 69 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-RRE----FEED-----LDGADLVFAATD 69 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-ESS-----GGG-----CTTESEEEE-SS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-hhh----HHHH-----HhhheEEEecCC
Confidence 46899999999999999999999999 888887765 2222 111111 111 2110 126899999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceee
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 306 (380)
.+..-....+..+.. |..+.+........|.
T Consensus 70 d~~~n~~i~~~a~~~-~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 70 DPELNEAIYADARAR-GILVNVVDDPELCDFI 100 (103)
T ss_dssp -HHHHHHHHHHHHHT-TSEEEETT-CCCCSEE
T ss_pred CHHHHHHHHHHHhhC-CEEEEECCCcCCCeEE
Confidence 866666666666665 8888887755444443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.016 Score=52.21 Aligned_cols=45 Identities=36% Similarity=0.425 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
.++++++|+|+|+.+.+++.-++..|+.+++++.|+.+|.+.+.+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 468999999999999999999999998799999999998776655
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.045 Score=49.02 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcC-C-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCceE--e--cCCCCCccHHHHHHHH
Q 016933 193 PERGSSVAVFGL-G-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTDF--V--NTSEHDRPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~-g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~v--i--~~~~~~~~~~~~~~~~ 261 (380)
+.+++++||+|+ | ++|.+.++.+...|+ +|+++++++++.+...+ +|...+ + |..+.+ .+.+.+...
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEA-QVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHH-HHHHHHHHH
Confidence 445789999987 6 799999999999999 78888888776554432 443222 2 332221 122222222
Q ss_pred h--CCCccEEEEcccC
Q 016933 262 T--NGGVDRSVECTGN 275 (380)
Q Consensus 262 ~--~~~~d~v~d~~g~ 275 (380)
. .+++|++|++.|.
T Consensus 92 ~~~~g~id~li~~ag~ 107 (262)
T PRK07831 92 VERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1 1478999999984
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.12 Score=46.35 Aligned_cols=106 Identities=24% Similarity=0.306 Sum_probs=76.6
Q ss_pred hhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-e--Ee--cCCCCCc
Q 016933 182 TGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-D--FV--NTSEHDR 252 (380)
Q Consensus 182 ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~--vi--~~~~~~~ 252 (380)
.++..+.+..++++|++||=+|+|- |.+++.+|+..|+ +|++++-|++..+.+++ .|.. . +. |+.+.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-- 134 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-- 134 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--
Confidence 3444567889999999999999864 7778899999999 99999999998877765 6654 1 11 22221
Q ss_pred cHHHHHHHHhCCCccEEE-----EcccC---hhhHHHHHHHhhcCCcEEEEEcCCCCC
Q 016933 253 PIQEVIAEMTNGGVDRSV-----ECTGN---IDNMISAFECVHDGWGVAVLVGVPSKD 302 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~ 302 (380)
.+.||-|+ +.+|. +..+..+-+.|+++ |++.+...+...
T Consensus 135 ----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~~ 181 (283)
T COG2230 135 ----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGPD 181 (283)
T ss_pred ----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCCC
Confidence 12366654 34554 35688999999997 999988776544
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.05 Score=49.47 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~ 237 (380)
.+++++|+|+|++|.+++..+...|+++|++++++.+|.+.+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4688999999999999999999999988999999988876554
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.046 Score=47.61 Aligned_cols=77 Identities=16% Similarity=0.302 Sum_probs=52.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++++|+|+ |.+|...++.+...|+ +|+.++++.++.+.++..+... ..|..+.+ .+.+.+.....+++|+++.+.|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVADPA-SVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCCHH-HHHHHHHHhcCCCCCEEEECCC
Confidence 46899987 9999988887777799 8999989888877777666542 23333322 2333333333337999999887
Q ss_pred C
Q 016933 275 N 275 (380)
Q Consensus 275 ~ 275 (380)
.
T Consensus 80 ~ 80 (222)
T PRK06953 80 V 80 (222)
T ss_pred c
Confidence 5
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.051 Score=46.06 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
++++.+||-+|+| .|..++.+++.....+|++++.+++..+.+++ .+.+.+ .....+ ..+ +.. .+.+|+
T Consensus 43 l~~g~~VLDiGcG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~~d--~~~-~~~--~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVHGR--AEE-FGQ--EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEecc--Hhh-CCC--CCCccE
Confidence 4568889988875 25666666665533399999999987776654 454332 111111 111 111 337999
Q ss_pred EEEcccC--hhhHHHHHHHhhcCCcEEEEEc
Q 016933 269 SVECTGN--IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 269 v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+-.... ...+..+.+.|+++ |+++.+-
T Consensus 116 V~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~ 145 (187)
T PRK00107 116 VTSRAVASLSDLVELCLPLLKPG-GRFLALK 145 (187)
T ss_pred EEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 9864322 35677889999997 9988773
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.092 Score=45.05 Aligned_cols=82 Identities=29% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.|++++|.|.|.+|..+++.+...|+ +|++++++.++.+.+++ +|+. .++..+ + ....+|+++-|
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~----l-------~~~~~Dv~vp~ 92 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE----I-------YSVDADVFAPC 92 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh----h-------ccccCCEEEec
Confidence 357899999999999999999999999 89999999888776655 4653 333211 1 11158888866
Q ss_pred ccChhhHHHHHHHhhc
Q 016933 273 TGNIDNMISAFECVHD 288 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~ 288 (380)
..........++.++.
T Consensus 93 A~~~~I~~~~~~~l~~ 108 (200)
T cd01075 93 ALGGVINDDTIPQLKA 108 (200)
T ss_pred ccccccCHHHHHHcCC
Confidence 5543444555566654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.048 Score=50.60 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cC-Cc---eEecCCCCCccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FG-VT---DFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG-~~---~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.|++++|+|+ +++|.+.+......|+ +|+.+++++++.+.+.+ .+ .. ...|..+...+..+.+.+..++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 5889999998 9999987777777899 89999999988765432 12 11 1234443212234445544444
Q ss_pred -CccEEEEcccC
Q 016933 265 -GVDRSVECTGN 275 (380)
Q Consensus 265 -~~d~v~d~~g~ 275 (380)
.+|++++++|.
T Consensus 131 ~didilVnnAG~ 142 (320)
T PLN02780 131 LDVGVLINNVGV 142 (320)
T ss_pred CCccEEEEecCc
Confidence 56799998763
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.041 Score=49.31 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eE--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DF--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ .+.. .+ .|..+.+ .+.+.+.+... +
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE-ATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH-HHHHHHHHHHHHcC
Confidence 4789999997 8999999988888899 89999898876554332 2322 12 2333221 12222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|+++|.
T Consensus 87 ~id~vi~~Ag~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.032 Score=56.95 Aligned_cols=76 Identities=28% Similarity=0.340 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh---------------------HHHHHHhcCCceEecCCCC-Cc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK---------------------RFEEAKKFGVTDFVNTSEH-DR 252 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~---------------------~~~~~~~lG~~~vi~~~~~-~~ 252 (380)
.+++|+|+|+|..|+.+++.++..|+ +|+++++.+. +.++++++|++..++..-. +-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 48999999999999999999999999 7888876652 5677888998776655321 11
Q ss_pred cHHHHHHHHhCCCccEEEEcccCh
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+ ..+. .++|.||.++|..
T Consensus 388 ~~----~~l~-~~~DaV~latGa~ 406 (639)
T PRK12809 388 TF----SDLT-SEYDAVFIGVGTY 406 (639)
T ss_pred CH----HHHH-hcCCEEEEeCCCC
Confidence 12 2222 2699999999973
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.066 Score=46.52 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=66.4
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
.....++++++||=+|+|. |..++.+++..+. .+|++++.+++..+.+++ .|.+.+.-. ..+ ..+... .
T Consensus 70 ~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~-~~d--~~~~~~--~ 143 (215)
T TIGR00080 70 TELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVI-VGD--GTQGWE--P 143 (215)
T ss_pred HHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEE-ECC--cccCCc--c
Confidence 4556788999999998763 6777788887653 369999999987776654 454332111 111 111000 1
Q ss_pred CCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+.||+|+-..........+.+.|+++ |++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence 237999876554546677888999997 998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.069 Score=45.92 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|...++.+...|+++++.++.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4789999999999999999999999899999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.045 Score=49.00 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-CCce-E--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-GVTD-F--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-G~~~-v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
++++++|+|+ |.+|...++.....|+ +|+.++++.++.+.+++. +... . .|..+.+ ...+.+++... +.+|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLD-DHKEAVARCVAAFGKID 81 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHH-HHHHHHHHHHHHhCCCC
Confidence 4689999997 9999999888888899 899998988777666553 3211 1 2332221 13333333221 3689
Q ss_pred EEEEccc
Q 016933 268 RSVECTG 274 (380)
Q Consensus 268 ~v~d~~g 274 (380)
+++++.|
T Consensus 82 ~li~~Ag 88 (262)
T TIGR03325 82 CLIPNAG 88 (262)
T ss_pred EEEECCC
Confidence 9999986
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.031 Score=50.81 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-EecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
++++++|+|+|+.+.+++..+..+|+.+|+++.|+.+|.+.+.+ ++... +.... +.+.+.... ..+|+|++|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~~~~~~~~-~~~DiVIna 197 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GDSGGLAIE-KAAEVLVST 197 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----chhhhhhcc-cCCCEEEEC
Confidence 57889999999999999999999999889999999887766543 33211 11111 001111111 368999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
++.
T Consensus 198 Tp~ 200 (282)
T TIGR01809 198 VPA 200 (282)
T ss_pred CCC
Confidence 875
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.019 Score=55.96 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=61.2
Q ss_pred hhccCCCCCCeEE----EEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eEecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVA----VFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vl----I~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~ 261 (380)
....++++|+.+| |+|+ |++|.+++|+++..|+ .|+++...+.+....+..+.+ .++|..... +.+.+...
T Consensus 26 ~~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~l~~~ 102 (450)
T PRK08261 26 VPLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATGIT--DPADLKAL 102 (450)
T ss_pred ccccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCCCC--CHHHHHHH
Confidence 3456778888887 7765 9999999999999999 888886666644444444554 345544322 23333322
Q ss_pred hCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 262 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
. ..+...++.+.++ |+++.++..
T Consensus 103 ~--------------~~~~~~l~~l~~~-griv~i~s~ 125 (450)
T PRK08261 103 Y--------------EFFHPVLRSLAPC-GRVVVLGRP 125 (450)
T ss_pred H--------------HHHHHHHHhccCC-CEEEEEccc
Confidence 1 3455566777775 777777654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.034 Score=50.92 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=53.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC--ceE---ecCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV--TDF---VNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~--~~v---i~~~~~~~~~~~~~~~~~--~~~ 265 (380)
+++++||+|+ |++|...++.....|+ +|+.+++++++.+.+ ++++. ... .|..+.+ .+.+.+.+.. -++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLA-AMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHH-HHHHHHHHHHHHcCC
Confidence 5789999997 9999999999988999 899998988876554 44542 111 3333321 1223333222 147
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999999985
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.037 Score=49.45 Aligned_cols=80 Identities=25% Similarity=0.246 Sum_probs=52.5
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-c--eEe--cCCCCCccHHHHHHHHh--CCC
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-T--DFV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~--~vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
-++.++||+|+ |.+|...+..+...|+ +|+.++++++..+.+.+... . .++ |..+.+ .+.+.+.+.. -++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVADPA-QVERVFDTAVERFGG 86 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHH-HHHHHHHHHHHHhCC
Confidence 46789999997 9999999998888899 79999888776665544221 1 222 332221 1222222221 137
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+||.+.|.
T Consensus 87 ~d~vi~~ag~ 96 (264)
T PRK12829 87 LDVLVNNAGI 96 (264)
T ss_pred CCEEEECCCC
Confidence 9999999875
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=47.07 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=61.2
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--ceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|.|+|+ |.+|...++=|+..|. .|+++.++++|....+..-+ ..+++... +++.. .++|+||++.|
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~~--------~a~~l-~g~DaVIsA~~ 71 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLTS--------LASDL-AGHDAVISAFG 71 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChhh--------hHhhh-cCCceEEEecc
Confidence 5889998 9999999999999999 99999999998865433211 01222111 11111 27999999988
Q ss_pred Ch--h-------hHHHHHHHhhc-CCcEEEEEcCC
Q 016933 275 NI--D-------NMISAFECVHD-GWGVAVLVGVP 299 (380)
Q Consensus 275 ~~--~-------~~~~~~~~l~~-~~G~~v~~g~~ 299 (380)
.. + ..+.++..++. +.-|+..+|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA 106 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA 106 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 64 1 23346666666 22477777764
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.071 Score=48.09 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=64.0
Q ss_pred hcchhhhhhhhhhhhccC-CCCCCeEEEEcCCH-HHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 175 ILSCGVSTGLGATLNVAK-PERGSSVAVFGLGA-VGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g~-~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
.+||+....+.. ++... --.|++++|+|.|. +|..++.++...|+ +|++..+....
T Consensus 137 ~~PcTp~ai~~l-l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~-------------------- 194 (286)
T PRK14175 137 FVPCTPLGIMEI-LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD-------------------- 194 (286)
T ss_pred CCCCcHHHHHHH-HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh--------------------
Confidence 355544444443 33333 34789999999855 99999999999999 88877543210
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 195 -l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~ 233 (286)
T PRK14175 195 -MASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP 233 (286)
T ss_pred -HHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence 222221 48999999999776665 457886 7788888754
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.059 Score=48.23 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCc-eEe--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVT-DFV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~-~vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
+++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.+ ++.. .++ |..+.+ .+.+.+.+.. -+.+|
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYA-DNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHH-HHHHHHHHHHHhcCCCC
Confidence 4688999997 9999998888888899 89999898887766544 3321 122 322211 1223333322 23799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ~li~~ag~ 90 (263)
T PRK06200 83 CFVGNAGI 90 (263)
T ss_pred EEEECCCC
Confidence 99999873
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.029 Score=50.03 Aligned_cols=101 Identities=10% Similarity=-0.048 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEE-EEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRS-VEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v-~d~ 272 (380)
...++|||+|+|. |.++-.++|+-. +|+.++.+++-.+.++++-...--..+++.-++...+.+...+.+|+| +|+
T Consensus 71 ~~pk~VLIiGGGD-Gg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFD-LELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCc-hHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcC
Confidence 3448999998765 456778888753 899999999999999883221100112222112222333333579996 676
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.-.++....+.++|+++ |.++.-..
T Consensus 148 ~~~~~fy~~~~~~L~~~-Gi~v~Qs~ 172 (262)
T PRK00536 148 EPDIHKIDGLKRMLKED-GVFISVAK 172 (262)
T ss_pred CCChHHHHHHHHhcCCC-cEEEECCC
Confidence 66667888999999997 98886644
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.057 Score=48.66 Aligned_cols=70 Identities=23% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
....+++++|+|+|+.+.+++..++..|+.+|++++|+.+|.+.+.+ ++.. +.+.+ ....+|+|+
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~-----------~~~~~---~~~~~dlvI 183 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE-----------WRPDL---GGIEADILV 183 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc-----------chhhc---ccccCCEEE
Confidence 34455789999999999999999999999889999999988766644 3311 10011 112589999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
+|+..
T Consensus 184 NaTp~ 188 (272)
T PRK12550 184 NVTPI 188 (272)
T ss_pred ECCcc
Confidence 99753
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.094 Score=45.91 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=73.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
....++.+|+.|+=.|.| .|.+++.||++.|- ++|+.....++..+.+++ +|....+.....| ..+.. .
T Consensus 87 ~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D--v~~~~---~ 160 (256)
T COG2519 87 VARLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD--VREGI---D 160 (256)
T ss_pred HHHcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc--ccccc---c
Confidence 456789999999877765 48888899998864 599999999888777754 4554322221121 21111 1
Q ss_pred CCCccEE-EEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 263 NGGVDRS-VECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v-~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
...+|++ +|.--..+.++.+.+.|+++ |.++++-..
T Consensus 161 ~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~ 197 (256)
T COG2519 161 EEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPT 197 (256)
T ss_pred ccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCC
Confidence 1268876 66666667899999999997 999988654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.067 Score=50.68 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.+.++||+|+|-+|.+++......|+.+|++..|+.+|.. +++++|+. ++..++ +.... ..+|+||.+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~e--------l~~~l-~~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALEE--------LLEAL-AEADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHHH--------HHHhh-hhCCEEEEe
Confidence 46789999999999999999999999889999999988764 56779854 332222 22222 258999999
Q ss_pred ccChhh---HHHHHHHhhcCCc-EEEEEcCCC
Q 016933 273 TGNIDN---MISAFECVHDGWG-VAVLVGVPS 300 (380)
Q Consensus 273 ~g~~~~---~~~~~~~l~~~~G-~~v~~g~~~ 300 (380)
+|.+.. .......+..... -++.++.+.
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred cCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 998643 2344455555312 345555543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.06 Score=48.69 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=52.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--E--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--F--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
.++++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+.+..... . .|..+.+ .+.+.++.... +++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~-~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTDFD-AIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHH-HHHHHHHHHHHHhCCCC
Confidence 3578999997 9999999888888899 8999999988876665533221 2 2333321 12233332221 3689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 81 ~vv~~ag~ 88 (277)
T PRK06180 81 VLVNNAGY 88 (277)
T ss_pred EEEECCCc
Confidence 99999885
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.079 Score=47.71 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=51.3
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcC-Cce-EecCCCCCccHHHHHHHHhC--CCccEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFG-VTD-FVNTSEHDRPIQEVIAEMTN--GGVDRS 269 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG-~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~v 269 (380)
++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++++ ... ..|..+.+ .+.+.+..... +++|++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTDPA-SFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCCHH-HHHHHHHHHHHHcCCCCEE
Confidence 578999997 9999998888878899 788888888776544 3444 222 22433322 23233333221 479999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 83 i~~ag~ 88 (273)
T PRK07825 83 VNNAGV 88 (273)
T ss_pred EECCCc
Confidence 999874
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.053 Score=48.22 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--E--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--F--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++++..+...++.... . .|..+.. .+.+.+..... +++|
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~~~d 91 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQ-SVEAAVAAVISAFGRID 91 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHH-HHHHHHHHHHHHhCCCC
Confidence 4679999997 9999998888888899 8999988877665555543221 2 2322211 12222222211 3689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++.+.|.
T Consensus 92 ~vi~~ag~ 99 (255)
T PRK06841 92 ILVNSAGV 99 (255)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.077 Score=48.50 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |++|.+.+..+...|+ +|++++++.++.+.+.+ .+.+. ++ |..+.+ .+.+.+.... -+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~-~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLD-AVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHH-HHHHHHHHHHHHcC
Confidence 3578999997 9999998888888899 89999998877654432 33322 22 322221 1222222221 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 78999999874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.084 Score=46.52 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=69.1
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh-
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT- 262 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~- 262 (380)
...+..+.++||=+|.| +|+.++.+|+.++ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+.++.
T Consensus 62 ~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gd--a~~~L~~l~~ 138 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSD--ALSALDQLLN 138 (234)
T ss_pred HHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcc--HHHHHHHHHh
Confidence 34556677889988864 4777777887763 3499999999998887765 4543222222222 444444442
Q ss_pred ---CCCccEEEEccc---ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 ---NGGVDRSVECTG---NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ---~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.||.||--.. -...+..+.+.++++ |.++.-..
T Consensus 139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~dn~ 179 (234)
T PLN02781 139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFDNT 179 (234)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEEcC
Confidence 237999875432 235678889999997 88776543
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.1 Score=46.16 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~ 265 (380)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ +..+... .+..+-.+ ..+.+.+..... ++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999997 9999999998888899 889998887765443 2234432 22222111 123333333222 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 83 id~vi~~ag~ 92 (253)
T PRK08217 83 LNGLINNAGI 92 (253)
T ss_pred CCEEEECCCc
Confidence 8999999873
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.16 Score=45.70 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=48.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce----EecCCCCCccHHHHHHHHh--CCCc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD----FVNTSEHDRPIQEVIAEMT--NGGV 266 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~----vi~~~~~~~~~~~~~~~~~--~~~~ 266 (380)
+++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ +..+... ..|..+.+ ...+.+.+.. .+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYD-AVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHH-HHHHHHHHHHHhcCCC
Confidence 6899987 9999999988888899 788888887664433 2334322 23433322 1222222221 1368
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 999999974
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.18 Score=44.10 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCc--EEEEEcCC----hhH--------HHHHHhcCCceEecCCCCCccHHHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGAS--RIIGVDRS----SKR--------FEEAKKFGVTDFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~--~vi~~~~~----~~~--------~~~~~~lG~~~vi~~~~~~~~~~~~~~ 259 (380)
-.+.+++|+|+|..|.+.+..+...|+. +++.++++ .+| .+++++++... . +. .+.+.+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~~--~l~~~l- 95 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---GG--TLKEAL- 95 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---cC--CHHHHH-
Confidence 3567999999999999999888889997 89999988 343 33445543211 1 01 133333
Q ss_pred HHhCCCccEEEEcccChhhH-HHHHHHhhcCCcEEEEE
Q 016933 260 EMTNGGVDRSVECTGNIDNM-ISAFECVHDGWGVAVLV 296 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~ 296 (380)
.++|+++.+++. ..+ ...++.+.++ ..+..+
T Consensus 96 ----~~~dvlIgaT~~-G~~~~~~l~~m~~~-~ivf~l 127 (226)
T cd05311 96 ----KGADVFIGVSRP-GVVKKEMIKKMAKD-PIVFAL 127 (226)
T ss_pred ----hcCCEEEeCCCC-CCCCHHHHHhhCCC-CEEEEe
Confidence 248999999974 443 4677777775 544433
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.078 Score=47.16 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=50.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHhCCCcc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~~~~~d 267 (380)
++++||+|+ |.+|...++.+...|+ +|+++.+++++.+.+.+ .+... + .|..+. +.+.....+++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDA-----IDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCH-----HHHHHHhcCCCC
Confidence 467999997 9999999999988999 88888888766554433 33221 1 233221 223333344799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 76 ~vi~~ag~ 83 (257)
T PRK09291 76 VLLNNAGI 83 (257)
T ss_pred EEEECCCc
Confidence 99999873
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.16 Score=45.08 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...+......|+ +|+.+++++++.+.+.+ .+... . .|..+. ..+.+.+..+. .+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDE-EAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHHHcC
Confidence 3578999997 9999998888877899 89999888776544322 23321 2 233222 12333333322 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|.++|.
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.068 Score=47.28 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cC--Cc-eEe--cCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FG--VT-DFV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG--~~-~vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ +. .. .++ |..+.+ .+...+.... -+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEA-DVEAAVAAALERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHH-HHHHHHHHHHHHhCC
Confidence 3578999997 9999998888888899 79999999877655432 32 21 122 222211 2323222221 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999999875
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.067 Score=47.68 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=50.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCce-E--ecCCCCCccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTD-F--VNTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~-v--i~~~~~~~~~~~~~~~~~~--~~ 265 (380)
+++++||+|+ |.+|...+......|+ +|+.+++++++.+..++ .+... . .|..+.+ .+.+.+.+... ++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDA-QCRDAVEQTVAKFGR 83 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHHhcCC
Confidence 4678999997 9999998888877899 78888888776654443 34321 2 2332221 13333333221 37
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 84 id~vi~~ag~ 93 (258)
T PRK08628 84 IDGLVNNAGV 93 (258)
T ss_pred CCEEEECCcc
Confidence 8999999984
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.089 Score=47.38 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=58.5
Q ss_pred CCCCeEEEEcC-CHHHHH-HHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCc---eEecCCCCCccHHHHHHHHhC
Q 016933 194 ERGSSVAVFGL-GAVGLA-AAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVT---DFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~-ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~---~vi~~~~~~~~~~~~~~~~~~ 263 (380)
+-|++.+|+|+ .++|.+ |-++|+ .|. +|+.+.|+++|++.+++ .++. .++|+.+++. ..+.+++...
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence 45789999998 789976 777777 899 89999999999877654 4431 2567777665 4555666555
Q ss_pred C-CccEEEEcccC
Q 016933 264 G-GVDRSVECTGN 275 (380)
Q Consensus 264 ~-~~d~v~d~~g~ 275 (380)
+ .+-+.++++|-
T Consensus 124 ~~~VgILVNNvG~ 136 (312)
T KOG1014|consen 124 GLDVGILVNNVGM 136 (312)
T ss_pred CCceEEEEecccc
Confidence 5 77888999884
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.081 Score=46.83 Aligned_cols=79 Identities=27% Similarity=0.291 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eE--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DF--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+......|+ +|+.+++++++.+.+.+ .+.. .. .|..+.. .+.+.+.... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD-SAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH-HHHHHHHHHHHHhC
Confidence 4678999997 9999998888888899 89999888765433322 2221 12 2332221 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.088 Score=47.52 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=48.8
Q ss_pred CCCeEEEEcCC---HHHHHHHHHHHHcCCcEEEEEcCChhHHH----HHHhcCCceEe--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGLG---AVGLAAAEGARIAGASRIIGVDRSSKRFE----EAKKFGVTDFV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~g---~~G~~ai~la~~~g~~~vi~~~~~~~~~~----~~~~lG~~~vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
+++++||+|++ ++|.+.++.....|+ +|+.++++++..+ +.+++|....+ |..+.+ ..+.+.+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~- 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW- 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh-
Confidence 46889999984 899998888888999 8888877653222 22334543322 333321 12223333222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 84 g~iD~lVnnAG~ 95 (271)
T PRK06505 84 GKLDFVVHAIGF 95 (271)
T ss_pred CCCCEEEECCcc
Confidence 479999999873
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.094 Score=47.06 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCce-E--ecCCCCCccHHHHHHHHh-CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTD-F--VNTSEHDRPIQEVIAEMT-NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~-v--i~~~~~~~~~~~~~~~~~-~~ 264 (380)
+++++||+|+ +++|.+.++.+...|+ +|+.++++.++.+.+.+ + +.+. . .|..+.+ ...+.+.+.. -+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKRE-DLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH-HHHHHHHHHHhhC
Confidence 4788999997 8999999988888999 89988898877654432 2 3221 2 2333321 1222222221 24
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 79999999874
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.076 Score=47.23 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ .+.+. . .|..+.+ .+.+.+.+.. -+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQ-QVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH-HHHHHHHHHHHHhC
Confidence 4789999997 9999999988888999 89988888776654432 23221 1 2333321 1223232221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.44 Score=43.42 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=46.9
Q ss_pred hccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC---ChhHHHHHHhcCCceEe
Q 016933 189 NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR---SSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~---~~~~~~~~~~lG~~~vi 245 (380)
....+.||.+.||-.. |.+|...+.++...|+ ++|.+.. +.+|...++.+|+..+.
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~ 155 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIIL 155 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEe
Confidence 4567899999999875 9999999999999999 6666643 66899999999997664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.09 Score=48.27 Aligned_cols=99 Identities=21% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--------eEecCCCCCccHHHHHHHHhCCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--------DFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--------~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
.+.++|||+|+|. |.++..+++.-+..+|.+++.+++-.+.+++.-.. .+ .....| ..+.+++..++.
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-~vi~~D--a~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-NLHIGD--GVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-EEEECh--HHHHHhhccCCC
Confidence 4568899998865 55677888877766899999999888888773211 11 000111 333344433447
Q ss_pred ccEEEEcccC----------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 266 VDRSVECTGN----------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 266 ~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+|+||--... .+.+..+.++|+++ |.++...
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 9998653222 24578899999997 9987543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.17 Score=47.05 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHH-HHcCCcEEEEEcCChhHHHHHHh-----cCCceEecCCCCCccHHHHHHHHhCCCcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGA-RIAGASRIIGVDRSSKRFEEAKK-----FGVTDFVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la-~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
+..++++|+|+|..|.+.+..+ ...++++|.++++++++.+.+.+ ++.. +..+++ +.+.+ ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~~----~~~~~-----~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVNS----ADEAI-----EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeCC----HHHHH-----hcCC
Confidence 3457899999999998776544 45688899999999888654432 3432 222222 33333 2589
Q ss_pred EEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 268 RSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+|+.|+++...+- . +.++++ -+++.+|...
T Consensus 195 iVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~ 224 (325)
T PRK08618 195 IIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFM 224 (325)
T ss_pred EEEEccCCCCcch-H-HhcCCC-cEEEecCCCC
Confidence 9999998854333 3 888996 8888898754
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.098 Score=46.81 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c--CCc-eEe--cCCCCCccHHHHHHHHh-CCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F--GVT-DFV--NTSEHDRPIQEVIAEMT-NGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l--G~~-~vi--~~~~~~~~~~~~~~~~~-~~~~ 266 (380)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ + +.. ..+ |..+.+ .+.+...... .+.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~-~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEA-GREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHhcCCC
Confidence 4678999987 9999998888888899 89999998877655533 2 211 122 222211 1222222111 2478
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++.+.|.
T Consensus 82 d~lv~~ag~ 90 (263)
T PRK09072 82 NVLINNAGV 90 (263)
T ss_pred CEEEECCCC
Confidence 999999875
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.21 Score=45.08 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=50.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-CCc-eEecCCCCC-ccHHHHHHHHh--CCCccEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-GVT-DFVNTSEHD-RPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-G~~-~vi~~~~~~-~~~~~~~~~~~--~~~~d~v 269 (380)
++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+. +.. ..+..+-.+ ..+.+.+.... -+++|++
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 81 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV 81 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999997 9999998888877898 899998988776655442 221 122222111 11222232221 1378999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+.+.|.
T Consensus 82 i~~ag~ 87 (275)
T PRK08263 82 VNNAGY 87 (275)
T ss_pred EECCCC
Confidence 999885
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.51 Score=42.77 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=46.6
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~ 248 (380)
.....+++|++|+=--+|.+|.+.+.+|+.+|++-++++. .+.+|..+++.+|+..++...
T Consensus 54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 3556799999554333599999999999999995555553 477999999999997766544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.09 Score=48.45 Aligned_cols=92 Identities=26% Similarity=0.416 Sum_probs=60.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|+|+|.|.+|.+.+..++..|. ..|+++++++++.+.+++.|....+. .+ ..+.+ ...|+|+.|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~----~~~~~-----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-TS----AAEAV-----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-CC----HHHHh-----cCCCEEEECCCH
Confidence 579999999999998888887774 37999999999999888887532111 11 11111 257999999876
Q ss_pred hhh---HHHHHHHhhcCCcEEEEEcCC
Q 016933 276 IDN---MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 276 ~~~---~~~~~~~l~~~~G~~v~~g~~ 299 (380)
... +......++++ ..++.+|..
T Consensus 77 ~~~~~v~~~l~~~l~~~-~iv~dvgs~ 102 (307)
T PRK07502 77 GASGAVAAEIAPHLKPG-AIVTDVGSV 102 (307)
T ss_pred HHHHHHHHHHHhhCCCC-CEEEeCccc
Confidence 322 23333445564 556666543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.053 Score=55.54 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh---------------------HHHHHHhcCCceEecCCCC-C
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK---------------------RFEEAKKFGVTDFVNTSEH-D 251 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~---------------------~~~~~~~lG~~~vi~~~~~-~ 251 (380)
..+++|+|+|+|..|+.++..+...|+ +|+++++.+. +.++++++|.+...+..-. +
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 368899999999999999999999999 7888876532 4566777887654433211 1
Q ss_pred ccHHHHHHHHhCCCccEEEEcccC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
-.+ ..+. ..+|.||.++|.
T Consensus 404 i~~----~~~~-~~~DavilAtGa 422 (654)
T PRK12769 404 ISL----ESLL-EDYDAVFVGVGT 422 (654)
T ss_pred CCH----HHHH-hcCCEEEEeCCC
Confidence 011 1111 269999999886
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.24 Score=44.39 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-------------------hHH----HHHHhcCCce-EecCCCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-------------------KRF----EEAKKFGVTD-FVNTSEH 250 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-------------------~~~----~~~~~lG~~~-vi~~~~~ 250 (380)
.+.+|+|+|.|++|..++..+-..|.++++.++.+. .|. +.++++..+- +..+++.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 347899999999999999999999988888887542 111 2222333321 2111111
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
- ..+.+.++....+|+|+||++.......+.+......-.++..|..
T Consensus 109 i--~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGa 155 (268)
T PRK15116 109 I--TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGA 155 (268)
T ss_pred c--ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 0 0123334443479999999988554444444444432445655544
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.086 Score=46.21 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=50.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
++++++|+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.+.+. . .|..+.+ ..+.+.+.+..++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4688999997 8999998877777899 888888888776443 2335432 1 2322221 1122333332232
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
.+|+++.+.|
T Consensus 83 ~iD~li~nag 92 (227)
T PRK08862 83 APDVLVNNWT 92 (227)
T ss_pred CCCEEEECCc
Confidence 6999999986
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.1 Score=46.16 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCCce-E--ecCCCCCccHHHHHHHHhC--CCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGVTD-F--VNTSEHDRPIQEVIAEMTN--GGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~~~ 266 (380)
.++++||+|+ |.+|...+..+...|+ +|+.+++++. ..+.+++++... + .|..+.+ .+.+.+.+... +++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIE-AIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHH-HHHHHHHHHHHHcCCC
Confidence 4789999997 9999998888888899 8888877652 233444455322 2 2332221 23333332221 369
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 82 d~li~~ag~ 90 (248)
T TIGR01832 82 DILVNNAGI 90 (248)
T ss_pred CEEEECCCC
Confidence 999998874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.093 Score=46.62 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=50.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCC-ccHHHHHHHHhC--CCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHD-RPIQEVIAEMTN--GGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~-~~~~~~~~~~~~--~~~ 266 (380)
|+++||+|+ |.+|...++.....|+ +|++++++.++.+.+.+ .+.. ..+..+-.+ ..+.+.+.+... +++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 468999987 9999999998888999 89999888776554432 2322 223222222 123232322221 368
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999999873
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.063 Score=47.27 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC-c---eEecCCCCC----ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV-T---DFVNTSEHD----RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~-~---~vi~~~~~~----~~~~~~~~~~ 261 (380)
++++++|+|+ |.+|...++.....|+ +|+.+++++++.+.+.+ .+. + ...|..+.+ ..+.+.+...
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4578999997 9999998888888899 89999998876654422 221 1 112332211 1233334443
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
..+.+|+++.+.|.
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 33578999999884
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.12 Score=49.05 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++....+..+++|.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~ 236 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGL 236 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCc
Confidence 57899999999999999999999999 99999887644444444554
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.19 Score=43.60 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=62.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh--------hHHHHHHhcCCce---------EecCCCC-----Ccc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS--------KRFEEAKKFGVTD---------FVNTSEH-----DRP 253 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~--------~~~~~~~~lG~~~---------vi~~~~~-----~~~ 253 (380)
...|+|+|.|++|..++..+-..|.+++..++-+. +-..+....|-.. -+|+.-. +.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 36799999999999999999999998888775422 2222222222111 0111110 101
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHH-HhhcCCcEEEEEcCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFE-CVHDGWGVAVLVGVP 299 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~-~l~~~~G~~v~~g~~ 299 (380)
..+.+.++...++|+|+||+.+-..-..++. |.+.. -.++..+..
T Consensus 110 t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Ga 155 (263)
T COG1179 110 TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGA 155 (263)
T ss_pred CHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeeccc
Confidence 2345666777799999999987555444444 55554 566666544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.1 Score=47.50 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--------ceEecCCCCCccHHHHHHHHhCCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--------TDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--------~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
...++||++|+|. |.++..+++..+..+|++++.+++-.+.+++.-. +.-+.....| ..+.++. ..+.
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D--a~~~l~~-~~~~ 150 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD--GIKFVAE-TENS 150 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc--hHHHHhh-CCCc
Confidence 3467899998865 6667777787677799999999998888887311 1000111112 3333433 3447
Q ss_pred ccEEEEcccC----------hhhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSVECTGN----------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+|+--... .+.+..+.+.|+++ |.++..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~ 190 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQ 190 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 9998753211 23467888999997 998865
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.099 Score=45.95 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=50.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCCccHHHHHHHHhC--CC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~~~~~~~~~~~~~--~~ 265 (380)
++++||+|+ |.+|...+......|+ +|+++++++++.+.+ ++.+.... .|..+.. .+.+.+.+... +.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEA-AVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHHHhCC
Confidence 468999998 9999999888888899 799998988764433 33444322 2333221 23333333221 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++.+.|.
T Consensus 83 id~vi~~ag~ 92 (246)
T PRK05653 83 LDILVNNAGI 92 (246)
T ss_pred CCEEEECCCc
Confidence 8999999865
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.12 Score=47.86 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcC-Cce-EecCCCCCccHHHHHHHHhC--CCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFG-VTD-FVNTSEHDRPIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG-~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~ 268 (380)
.++++||+|+ |.+|...+......|+ +|+.++++.++.+.+. ++. ... ..|..+.+ .+.+.+.+... +++|+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~-~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLADLE-SVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHH-HHHHHHHHHHhcCCCCCE
Confidence 4679999997 9999998888888899 8888888887665432 232 211 12333221 13333333322 47999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9999873
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.21 Score=45.76 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=47.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh------HHHHHHhcCCce-E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK------RFEEAKKFGVTD-F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~------~~~~~~~lG~~~-v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+.++.+ ..+.+++.|... + .|..+.+ .+.+.+.+..
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEA-FCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHHHHHH
Confidence 4689999997 9999998888888899 7776654432 122334445432 2 2332221 1222222221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 132 ~g~iD~lV~nAg~ 144 (300)
T PRK06128 132 LGGLDILVNIAGK 144 (300)
T ss_pred hCCCCEEEECCcc
Confidence 1379999999874
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=45.84 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-E--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+++++||+|+ |.+|...++.....|+ +|+.+++++++.+.+ ++++... . .|..+.. ..+.+.+.+.. +++|
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id 82 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAF-GRLD 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHh-CCCC
Confidence 4678999997 9999999998888999 899998887665443 4455432 1 2222211 11222222222 3689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=45.96 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCCeEEEEcCC---HHHHHHHHHHHHcCCcEEEEEcCChhHHH----HHHhcCCceEe--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGLG---AVGLAAAEGARIAGASRIIGVDRSSKRFE----EAKKFGVTDFV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~g---~~G~~ai~la~~~g~~~vi~~~~~~~~~~----~~~~lG~~~vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.|+++||+|++ ++|.+.+......|+ +|+.++++++..+ +.++++...++ |..+.+ ..+.+.+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~- 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW- 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc-
Confidence 46899999963 899998888888899 7888877754322 22334432233 222221 12223333322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 479999998873
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=44.96 Aligned_cols=80 Identities=25% Similarity=0.246 Sum_probs=51.3
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
..++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ .+... ++ |..+.+ .+.+.++....
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 81 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPE-AIAPGIAELLEQF 81 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHH-HHHHHHHHHHHHc
Confidence 34578999987 9999999988888899 89999998876544432 23221 22 322221 23233333221
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++.+.|.
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 369999999884
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.28 Score=48.73 Aligned_cols=103 Identities=23% Similarity=0.333 Sum_probs=66.8
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce---EecCCCCCccHHHHHHHHhC--CCc
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD---FVNTSEHDRPIQEVIAEMTN--GGV 266 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~---vi~~~~~~~~~~~~~~~~~~--~~~ 266 (380)
..++++||+|+ +++|...++.....|+ +|+.+++++++.+.+.+ ++... ..|..+.+ ...+.+.+... +.+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITDEA-AVESAFAQIQARWGRL 344 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHH-HHHHHHHHHHHHcCCC
Confidence 45789999997 9999998888888999 89999998887766554 45432 12333322 12222332221 369
Q ss_pred cEEEEcccCh--------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 267 DRSVECTGNI--------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 267 d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
|++|++.|.. .....++..+..+ |+++.++..
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~ 402 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSI 402 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECch
Confidence 9999988742 0133344556565 899888764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.16 Score=45.75 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=70.0
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh-
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT- 262 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~- 262 (380)
...+..+.++||=+|.+ +|+.++.+|+.++ -.+|++++.++++.+.+++ .|...-+.....+ ..+.+.++.
T Consensus 112 ~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd--A~e~L~~l~~ 188 (278)
T PLN02476 112 MLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL--AAESLKSMIQ 188 (278)
T ss_pred HHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHHHHh
Confidence 34556677899988863 5777888888774 2279999999998877754 5664323222222 444444432
Q ss_pred ---CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 ---NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.||.||--... ...++.+++.++++ |.++.-..
T Consensus 189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~DNv 229 (278)
T PLN02476 189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMDNV 229 (278)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEecC
Confidence 2479998654433 34678899999997 88876544
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=44.92 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHHhcCCceE-ecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
++++||+|+ +.+|...+......|+ +|+.+++++++ .+.+++.|+..+ .|..+.+ ...+.+.+... +++|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFSTNA-GIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCCHH-HHHHHHHHHHhhCCCccEEE
Confidence 467999997 9999999988888899 88888877643 344455564322 2333221 13333333222 3699999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 80 ~~ag~ 84 (236)
T PRK06483 80 HNASD 84 (236)
T ss_pred ECCcc
Confidence 99874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.14 Score=44.65 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=48.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+++|+|+ |.+|...++.....|+ +|+.+++++++.+.+ ++++...+ .|..+.+ .+.+.++.. .+.+|+++++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~-~~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTDPA-SLEEARGLF-PHHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCCHH-HHHHHHHHH-hhcCcEEEECCC
Confidence 4899987 9999998888888899 888888888876654 34454332 2333221 133333332 236899998865
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.12 Score=45.90 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v 269 (380)
.++++||+|+ |.+|...++.....|+ +|+.+.+ +++..+.+++.+...+ .|..+.+ ...+.+.... -+++|++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGNRD-QVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCCHH-HHHHHHHHHHHHcCCCCEE
Confidence 3688999997 9999998888888899 6766544 4444444544443222 2333321 2333333322 1369999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+.+.|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06463 84 VNNAGI 89 (255)
T ss_pred EECCCc
Confidence 999874
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=46.66 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=50.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-CCce-E--ecCCCCCccHHHHHHHHh--CCCccEE
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-GVTD-F--VNTSEHDRPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-G~~~-v--i~~~~~~~~~~~~~~~~~--~~~~d~v 269 (380)
+++||+|+ |.+|...+..+...|+ +|+++.++.++.+.+++. +... + .|..+.+ .+.+.+.+.. .+++|++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTDSA-AVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCCHH-HHHHHHHHHHHHcCCCCEE
Confidence 57999987 9999998888878899 899998988877666542 3211 1 2332221 2333333322 1368999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
|.+.|.
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 999874
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=46.39 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH----HHHhcCCce---EecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE----EAKKFGVTD---FVNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~----~~~~lG~~~---vi~~~~~~~~~~~~~~~~~--~~ 264 (380)
.+++++|+|+ |.+|...++.+...|++.|+.++++.++.. .+++.+... ..|..+.+ .+.+.+.... -+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVE-DCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH-HHHHHHHHHHHHhC
Confidence 4688999997 999999998888899944999988776554 333445432 12333321 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 84 ~id~li~~ag~ 94 (260)
T PRK06198 84 RLDALVNAAGL 94 (260)
T ss_pred CCCEEEECCCc
Confidence 69999999874
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=46.62 Aligned_cols=79 Identities=27% Similarity=0.322 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c--CCce-E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F--GVTD-F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l--G~~~-v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ +.+|.+.++.....|+ +|+.+++++++.+.+.+ . +... . .|..+.+ .+.+.+.+..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEA-DVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHH-HHHHHHHHHHHh
Confidence 4689999997 9999998888888899 89999898876654322 1 1111 1 2333322 1222233222
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+.+|++++++|.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 1369999999884
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.32 Score=40.20 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=57.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.|+..+- + ..+.+++ .|+||-++...
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~~---s----~~e~~~~-----~dvvi~~v~~~ 68 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVAD---S----PAEAAEQ-----ADVVILCVPDD 68 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEES---S----HHHHHHH-----BSEEEE-SSSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhhh---h----hhhHhhc-----ccceEeecccc
Confidence 368899999999988888888899 899999999999999888854321 1 2233322 58888888875
Q ss_pred hhHHHHHH------HhhcCCcEEEEEcCCC
Q 016933 277 DNMISAFE------CVHDGWGVAVLVGVPS 300 (380)
Q Consensus 277 ~~~~~~~~------~l~~~~G~~v~~g~~~ 300 (380)
+.....+. .+.++ ..++.++...
T Consensus 69 ~~v~~v~~~~~i~~~l~~g-~iiid~sT~~ 97 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPG-KIIIDMSTIS 97 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TT-EEEEE-SS--
T ss_pred hhhhhhhhhhHHhhccccc-eEEEecCCcc
Confidence 55554433 34453 4555555443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.32 Score=41.48 Aligned_cols=105 Identities=20% Similarity=0.338 Sum_probs=62.1
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.....++++++||=+|+| .|..++.+++.....+|++++.+++..+.+++ ++.+.+- ....+ ..+.+..+.
T Consensus 33 ~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~-~~~~d--~~~~~~~~~- 107 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVE-VIEGS--APECLAQLA- 107 (196)
T ss_pred HHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeE-EEECc--hHHHHhhCC-
Confidence 344567788888777764 25556666665533399999999988877764 5543321 11111 222222221
Q ss_pred CCccE-EEEcccC-hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDR-SVECTGN-IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~-v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+|. .++.... ...+..+.+.|+++ |+++....
T Consensus 108 ~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS 143 (196)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence 22344 4443222 35688899999997 99887754
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.21 Score=42.56 Aligned_cols=76 Identities=29% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCceE-ecCCCCCccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTDF-VNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~v-i~~~~~~~~~~~~~~~~~~~~~d 267 (380)
++.+++|+|+ |.+|...+..+...|+ +|+.+.++.++.+.+.+ + +.... .+..+ . +.+.+.. .++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~----~-~~~~~~~-~~~d 99 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD----D-AARAAAI-KGAD 99 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC----H-HHHHHHH-hcCC
Confidence 5689999997 9999988888877888 88888898877655433 2 22211 11211 1 1122222 2589
Q ss_pred EEEEcccChh
Q 016933 268 RSVECTGNID 277 (380)
Q Consensus 268 ~v~d~~g~~~ 277 (380)
+||.+++...
T Consensus 100 iVi~at~~g~ 109 (194)
T cd01078 100 VVFAAGAAGV 109 (194)
T ss_pred EEEECCCCCc
Confidence 9999987643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.12 Score=45.85 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |++|...+......|+ +|+.+++++++.+.+. +.+.+. .+ |..+.+ ...+.+.+... +
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEA-YAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH-HHHHHHHHHHHhcC
Confidence 3678999997 9999998888888899 8998888887765442 234322 22 332221 12222222221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++.+.|.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.12 Score=47.77 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=61.2
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe-cCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV-NTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|||+|+ |-+|...+..+...|. +|++++++.++...+...+++.+. |..+. +.+.+... ++|+||++++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~-----~~l~~al~-g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSLP-----ETLPPSFK-GVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCCH-----HHHHHHHC-CCCEEEECCCC
Confidence 6999997 9999999988888898 899998887776665556664432 22221 12333323 58999998763
Q ss_pred hh------------hHHHHHHHhhcC-CcEEEEEcCC
Q 016933 276 ID------------NMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 276 ~~------------~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.. ....+++.++.. -.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 21 113445555543 1378777653
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=45.89 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE-e--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF-V--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v-i--~~~~~~~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++.+.+.. + |..+.+ .+.+.+.... -+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNED-AVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHH-HHHHHHHHHHHHcC
Confidence 4689999998 9999998888888999 888888888654333 33454321 2 222221 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.+.|.
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 68999999874
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.14 Score=45.57 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=50.0
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC--c-eE--ecCCCCCccHHHHHHHHhC--CCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV--T-DF--VNTSEHDRPIQEVIAEMTN--GGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~--~-~v--i~~~~~~~~~~~~~~~~~~--~~~ 266 (380)
+.++||+|+ |.+|...+......|+ +|+.++++.++.+.+.+ +.. + .. .|..+. ..+.+.+.+... +.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDA-DALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCH-HHHHHHHHHHHHhCCCC
Confidence 468999987 9999998888888899 89999888877654433 321 1 11 233222 123333333222 368
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999998873
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.14 Score=45.60 Aligned_cols=79 Identities=29% Similarity=0.438 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++.|... .+ |..+.+ .+.+.+.... -+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD-AVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHH-HHHHHHHHHHHhcC
Confidence 4689999997 9999999888888899 899898887665432 2233322 22 332221 2323333222 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++|++.|.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 78999999875
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=45.66 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c---CCce---EecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F---GVTD---FVNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l---G~~~---vi~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+ + +... ..|..+.+ .+...+..... +
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDED-QCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHH-HHHHHHHHHHHHcC
Confidence 4688999997 9999998888888999 89999888876544432 2 3221 22332221 12222322211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++|.+.|.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999999874
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.17 Score=45.00 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHH-HHhcCCce-E--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE-AKKFGVTD-F--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~-~~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
.|+++||+|+ |.+|...+......|+ +|+.+++++++.+. .++++... . .|..+.+ .+.+.+.+... +.+|
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVADEA-QVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHH-HHHHHHHHHHHHhCCCC
Confidence 4688999987 9999998888888898 88888877765443 34454321 1 2332221 12222333222 3689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|.+.|.
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99999874
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.19 Score=47.87 Aligned_cols=90 Identities=28% Similarity=0.387 Sum_probs=56.2
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHh--cC--Cce-EecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 199 VAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKK--FG--VTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~--lG--~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
|+|+|+|.+|..++..+...+-. +|++.+++.++.+.+.+ .+ +.. .+|..+ . +.+.++.. +.|+|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~l~~~~~-~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND----P-ESLAELLR-GCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT----H-HHHHHHHT-TSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC----H-HHHHHHHh-cCCEEEEC
Confidence 68999999999999988877643 89999999999777654 22 222 233333 2 22555444 46999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEE
Q 016933 273 TGNIDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~ 295 (380)
+|.......+-.|+..+ -+++.
T Consensus 75 ~gp~~~~~v~~~~i~~g-~~yvD 96 (386)
T PF03435_consen 75 AGPFFGEPVARACIEAG-VHYVD 96 (386)
T ss_dssp SSGGGHHHHHHHHHHHT--EEEE
T ss_pred CccchhHHHHHHHHHhC-CCeec
Confidence 98754444555566664 55555
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.14 Score=45.54 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++.+... . .|..+.+ ..+.+.+.+.. +
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY-G 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence 4689999997 9999998888878899 899998887664333 3344322 2 2222221 11222222222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.+.|.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.19 Score=44.78 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhH-HH-H---HHhcCCc--eEe--cCCCCCccHHHHHHHH
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKR-FE-E---AKKFGVT--DFV--NTSEHDRPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~-~~-~---~~~lG~~--~vi--~~~~~~~~~~~~~~~~ 261 (380)
+..++++||+|+ |++|...++-+... |+ +|+.+++++++ .+ . +++.+.. +++ |..+.+ ...+.+.+.
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~-~~~~~~~~~ 82 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTD-SHPKVIDAA 82 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChH-HHHHHHHHH
Confidence 456788999997 99999988766555 57 88888887764 33 2 3333431 222 332221 133333333
Q ss_pred hC-CCccEEEEcccC
Q 016933 262 TN-GGVDRSVECTGN 275 (380)
Q Consensus 262 ~~-~~~d~v~d~~g~ 275 (380)
.. +++|+++.+.|.
T Consensus 83 ~~~g~id~li~~ag~ 97 (253)
T PRK07904 83 FAGGDVDVAIVAFGL 97 (253)
T ss_pred HhcCCCCEEEEeeec
Confidence 22 479999887765
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.26 Score=42.77 Aligned_cols=102 Identities=22% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceEec-------CCCCC-ccHHHHHHHHh--
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVN-------TSEHD-RPIQEVIAEMT-- 262 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~vi~-------~~~~~-~~~~~~~~~~~-- 262 (380)
.++.+||+.|+|. |.-++.+|. .|. .|++++.++.-.+.+ ++.|...... +...+ .-....+.++.
T Consensus 33 ~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 5678999999873 788888885 699 999999999988875 3333221000 00000 00000011111
Q ss_pred -CCCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 263 -NGGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 -~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+.+|.|+|+..- ...+..+.++|+|+ |++.++...
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~~ 154 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITLD 154 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEEE
Confidence 1368999997531 24578999999997 987766543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=45.51 Aligned_cols=79 Identities=29% Similarity=0.449 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |.+|...++.....|+ +|+.++++.++.+.+.+ .+... . .|..+.+ .+.+.+.++.. +
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~-~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEA-DIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH-HHHHHHHHHHHHhC
Confidence 4689999997 9999998888888899 89999888877654432 23221 2 2333321 23222222221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.+.|.
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=45.60 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c--CCc-eEe--cCCCCCccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F--GVT-DFV--NTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l--G~~-~vi--~~~~~~~~~~~~~~~~~~--~~ 265 (380)
+++++||+|+ |.+|...+......|+ +|+.+.++.++.+...+ + +.. .++ |..+.+ ...+.+..... ++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAE-AVEALVDFVAARWGR 81 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHcCC
Confidence 3678999997 9999988887777898 89999888765544332 2 322 122 322221 12222322221 37
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++.+.|.
T Consensus 82 id~vi~~ag~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
Confidence 9999999884
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.27 Score=44.16 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-CCc---eEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-GVT---DFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-G~~---~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.++++||++|.|. |.++..+++.....++++++.+++-.+.+++. +.. .-+.....| ..+.+... .+.+|+|
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~D--a~~~l~~~-~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEAD--GAEYIAVH-RHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECC--HHHHHHhC-CCCCCEE
Confidence 4567899999864 77888888877544999999999999998873 321 101111122 33444432 3479998
Q ss_pred E-EcccC---------hhhHHHHHHHhhcCCcEEEEE
Q 016933 270 V-ECTGN---------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 270 ~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+ |.... .+.+..+.++|+++ |.++..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin 176 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN 176 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence 5 44221 36788999999997 998763
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.93 Score=39.43 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++..|||+|+|.++.-=+..+...|+ +|++++..- +.+..+.+.|.-..+. .+.... .+ .++++||-++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~~~~~------dl--~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GNYDKE------FI--KDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChH------Hh--CCCcEEEECC
Confidence 56789999999999887888888999 777774432 2222222233222221 121100 11 3689999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeee
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTF 322 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 322 (380)
+.+..-.......+.. +.++.+........+.++..--...++|--+.
T Consensus 94 dD~~vN~~I~~~a~~~-~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST 141 (223)
T PRK05562 94 DDEKLNNKIRKHCDRL-YKLYIDCSDYKKGLCIIPYQRSTKNFVFALNT 141 (223)
T ss_pred CCHHHHHHHHHHHHHc-CCeEEEcCCcccCeEEeeeEEecCCEEEEEEC
Confidence 8854444555555553 66666554433444444433222345554443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.17 Score=47.16 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=30.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+.+|+|+|+|++|..++..+-..|+++++.++.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 36799999999999999999999998898888763
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=46.52 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=49.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-Hh---cCCce-EecCCCCC-ccHHHHHHHHh--CCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KK---FGVTD-FVNTSEHD-RPIQEVIAEMT--NGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~---lG~~~-vi~~~~~~-~~~~~~~~~~~--~~~~ 266 (380)
++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ .+ .+... ++..+-.+ ..+.+.+.... -+++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 578999987 9999998888888899 898888876654433 22 23322 12222222 12222222221 1368
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++|++.|.
T Consensus 85 d~vi~~Ag~ 93 (287)
T PRK06194 85 HLLFNNAGV 93 (287)
T ss_pred CEEEECCCC
Confidence 999999885
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.23 Score=44.25 Aligned_cols=77 Identities=27% Similarity=0.380 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCc-eEe--cCCCCCccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVT-DFV--NTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~-~vi--~~~~~~~~~~~~~~~~~~~~ 265 (380)
.++++||+|+ +++|...++.....|+ +|+.++++.++.+.+.+ + +.. .++ |..+. ..+.+.+.. . +.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~-~~~~~~~~~-~-g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSP-EAREQLAAE-A-GD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH-HHHHHHHHH-h-CC
Confidence 3689999997 8999998888888899 89999888776654322 2 322 122 22221 112222222 2 47
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=45.68 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=49.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHhC--CC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~~ 265 (380)
+.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ +..+... ++ |..+. ..+.+.+..... ++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDA-EACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH-HHHHHHHHHHHHHcCC
Confidence 357999997 9999999988888899 899998887654433 2234322 22 22221 123333333221 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++.+.|.
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 8999999874
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=47.84 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++....+..++.|+..+ .+ +.+.+. ..|+|+-+..
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~---~~----l~ell~-----~sDvV~l~lP 264 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE---ED----LDAMLP-----KCDVVVINTP 264 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec---CC----HHHHHh-----hCCEEEEeCC
Confidence 57899999999999999999999999 89999887544455555554321 11 222221 2566666554
Q ss_pred Chhh----H-HHHHHHhhcCCcEEEEEc
Q 016933 275 NIDN----M-ISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 275 ~~~~----~-~~~~~~l~~~~G~~v~~g 297 (380)
..+. + ...+..++++ ..++.++
T Consensus 265 lt~~T~~li~~~~l~~mk~g-a~lIN~a 291 (386)
T PLN03139 265 LTEKTRGMFNKERIAKMKKG-VLIVNNA 291 (386)
T ss_pred CCHHHHHHhCHHHHhhCCCC-eEEEECC
Confidence 3211 1 2455666664 5555554
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=46.30 Aligned_cols=81 Identities=28% Similarity=0.308 Sum_probs=53.7
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc------eEecCCCCC--ccHHHHHHH
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT------DFVNTSEHD--RPIQEVIAE 260 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~------~vi~~~~~~--~~~~~~~~~ 260 (380)
-.|+++||+|+ .++|.+.+......|+ +|+..++++++.+..++ .+.. .+.|..+.+ ..+.+...+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 35788999987 8999998888888999 89999899887655443 2221 123333221 122233333
Q ss_pred HhCCCccEEEEcccC
Q 016933 261 MTNGGVDRSVECTGN 275 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~ 275 (380)
...++.|+.++..|.
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 334579999998875
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.17 Score=45.87 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhcC-----CceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKFG-----VTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~lG-----~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
+.++|+-+|.|..++.++.+++... ..+++.++.+++..+.+++.- ...-+.+...+ ..+... ..++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D--a~~~~~--~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD--VMDVTE--SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc--hhhccc--ccCCcCE
Confidence 6789999999999999888887553 238999999999988887733 11212222222 211100 1247999
Q ss_pred EEEcc-------cChhhHHHHHHHhhcCCcEEEEEc
Q 016933 269 SVECT-------GNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 269 v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
||-.+ .....+..+.+.|+++ |.+++=.
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLRS 233 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCC-cEEEEec
Confidence 98775 2234678899999996 8776543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.058 Score=48.47 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
.+++++|+|+ |.+|...+..+...|+ +|++++++.++.+.. .+... ..|..+.+ .+.+.+..... +.+|++|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~-~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTDDA-SVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCCHH-HHHHHHHHHHHhCCCCCEEE
Confidence 3568999997 9999998888888899 899998887655432 12222 22333321 23333333322 3689999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 79 ~~ag~ 83 (270)
T PRK06179 79 NNAGV 83 (270)
T ss_pred ECCCC
Confidence 99985
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.21 Score=40.62 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHH-HHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE-AKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~-~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
..+.+++|+|+|.+|...++.....|..+|++++++.++.+. .++++... .....+ ..+. -+++|+|+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLD----LEEL-----LAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecc----hhhc-----cccCCEEEe
Confidence 456889999999999998888888864489999998877654 44555421 011111 1111 136899999
Q ss_pred cccCh
Q 016933 272 CTGNI 276 (380)
Q Consensus 272 ~~g~~ 276 (380)
+++..
T Consensus 88 ~~~~~ 92 (155)
T cd01065 88 TTPVG 92 (155)
T ss_pred CcCCC
Confidence 98763
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.5 Score=40.94 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCC--CccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNG--GVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~--~~d~v~d~ 272 (380)
+++||+|+ |.+|...+..+... + +|++++++.++.+.+.+ ...-.++..+-.+. +.+++...+ ++|+++.+
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~id~vi~~ 78 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTDP---EAIAAAVEQLGRLDVLVHN 78 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCCH---HHHHHHHHhcCCCCEEEEC
Confidence 57999987 99998877766555 6 89999898877655543 21112232222221 223333322 69999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 79 ag~ 81 (227)
T PRK08219 79 AGV 81 (227)
T ss_pred CCc
Confidence 875
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.067 Score=45.81 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCCCc
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
....++.+||-+|+|. |..++.+|+. |. +|++++.+++-.+.+++. +...+ .....+ +.+ . . ..+.+
T Consensus 26 l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~d--~~~-~-~-~~~~f 96 (197)
T PRK11207 26 VKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAVVD--LNN-L-T-FDGEY 96 (197)
T ss_pred cccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEecC--hhh-C-C-cCCCc
Confidence 3455678899998764 7777888875 77 999999999877766542 32211 111111 111 0 1 12369
Q ss_pred cEEEEccc----C----hhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVECTG----N----IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+.... . ...+..+.+.|+++ |.++++.
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~ 134 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA 134 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 99987533 1 24577888899997 9865543
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.19 Score=45.34 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcC---CceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFG---VTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG---~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
..++++++|+|+|++|.+.+..+...|+ +|++++++.++.+.+ +.+. ....+. +.+ .....+|+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~-------~~~----~~~~~~Di 181 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFS-------MDE----LPLHRVDL 181 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEec-------hhh----hcccCccE
Confidence 3557899999999999998888888898 899998988775444 3332 211211 111 11136899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
|++|++.
T Consensus 182 vInatp~ 188 (270)
T TIGR00507 182 IINATSA 188 (270)
T ss_pred EEECCCC
Confidence 9999876
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.16 Score=45.89 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+ +..|.+. . .|..+.+ .+.+.+.+.. -+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHRE-EVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHHHHHHcC
Confidence 4678999987 9999998888888899 788888887665433 2234322 1 2332221 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++|++.|.
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999999873
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.19 Score=45.41 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc---eEe--cCCCCCccHHHHHHHHhC--
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT---DFV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~---~vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+ .+.+ .++ |..+. ..+.+ +.+...
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~-~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ-NSIHN-FQLVLKEI 79 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH-HHHHH-HHHHHHhc
Confidence 568999997 9999999888888899 88888888776544432 2221 122 33322 12333 433322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++.+.|.
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 378999999874
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.26 Score=43.25 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-------------------hHH----HHHHhcCCceEecCCCCCc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-------------------KRF----EEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-------------------~~~----~~~~~lG~~~vi~~~~~~~ 252 (380)
..+|+|+|.|++|..++..+-..|.++++.++.+. .|. +.++++..+.-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~- 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF- 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee-
Confidence 36799999999999999999899998998887543 111 222233332111111110
Q ss_pred cH-HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEc
Q 016933 253 PI-QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 253 ~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+ .+....+....+|+|+||+.+......+.+......-.++..+
T Consensus 90 -i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 90 -LTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred -cCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 1 1233444444699999999886654445555444313444443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.18 Score=45.17 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE--ecCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
.|+++||+|+ + ++|.+.++.....|+ +|+...++++..+.+ ++.|.... .|..+.+ ...+.+++...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~-~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPK-SISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHH-HHHHHHHHHHHHc
Confidence 4688999997 4 799998877777899 788777764322222 22354332 3333322 12233332222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 85 g~iDilVnnag~ 96 (260)
T PRK06603 85 GSFDFLLHGMAF 96 (260)
T ss_pred CCccEEEEcccc
Confidence 379999998763
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.21 Score=44.71 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.. .+.+... + +|..+.+ .+.+.+.+.. .+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYA-AVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHH-HHHHHHHHHHHHcC
Confidence 5789999997 9999999988888999 899998887664333 2233221 2 2333221 1333333322 13
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
++|++|.+.|
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899998876
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.15 Score=46.08 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=49.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC--c-eE--ecCCCCCccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV--T-DF--VNTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~--~-~v--i~~~~~~~~~~~~~~~~~~--~~ 265 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++++++.+.+ .+++. . .. .|..+.+ .+.+.+..... ++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVED-DVSRAVDFTVDKFGT 94 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHH-HHHHHHHHHHHHhCC
Confidence 3678999987 9999998887777899 888888876654333 33321 1 12 2333321 12222322211 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 95 id~li~~Ag~ 104 (280)
T PLN02253 95 LDIMVNNAGL 104 (280)
T ss_pred CCEEEECCCc
Confidence 9999999874
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.19 Score=46.48 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc-----CCc-eE--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF-----GVT-DF--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l-----G~~-~v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.+++++|+|+ +++|.+.+..+...|+ +|+.++++.++.+.+. ++ +.. .+ +|..+.+ ...+.+.++.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~-sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLA-SVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHH-HHHHHHHHHHHh
Confidence 4689999997 9999998888878899 8888889877654332 22 111 12 2333322 1222222222
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
.+.+|++|++.|.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2378999998874
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.16 Score=45.74 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=48.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCce---EecCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTD---FVNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~---vi~~~~~~~~~~~~~~~~~--~~~ 265 (380)
+++++||+|+ +.+|.+.+......|+ +|+.++++++..+.+++ .+... ..|..+.+ ...+.+.... -+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQ-QVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHH-HHHHHHHHHHHHcCC
Confidence 4689999997 9999998888878899 88888888433333333 33221 23333321 1222232222 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 83 id~li~~Ag~ 92 (272)
T PRK08589 83 VDVLFNNAGV 92 (272)
T ss_pred cCEEEECCCC
Confidence 8999998874
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=45.29 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChh---HHHHH-HhcCCceE--ecCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSK---RFEEA-KKFGVTDF--VNTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~---~~~~~-~~lG~~~v--i~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++++ +.+.+ ++++.... .|..+.+ ...+.+.+.. -
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPE-HFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHH-HHHHHHHHHHHHc
Confidence 4689999986 4899998888888899 8888877742 33322 34554332 3443322 1222233222 1
Q ss_pred CCccEEEEcccCh-----------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI-----------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+|+++++.|.. .....++..+.++ |+++.++..
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~ 145 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYL 145 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecC
Confidence 4799999998841 0234455667775 888887654
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.22 Score=44.22 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHh--CCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
++++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ .+... .+ |..+.+ ...+.+.+.. -++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD-QVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH-HHHHHHHHHHHHcCC
Confidence 568999987 9999998888888899 89999888766544322 23322 12 332222 1223233322 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++.+.|.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.15 Score=45.30 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCCce-E--ecCCCCCccHHHHHHHHh--CCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGVTD-F--VNTSEHDRPIQEVIAEMT--NGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~~ 266 (380)
+++++||+|+ +++|.+.++.....|+ +|+.++++.. ..+.+++.+.+. . .|..+.+ .+.+.+.+.. -+++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQK-DIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHH-HHHHHHHHHHHHcCCC
Confidence 4789999997 9999999988888999 8887766542 223344455432 2 2333322 2333333221 2369
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 999999874
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.13 Score=45.01 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=68.2
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc--C--Cce-EecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF--G--VTD-FVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l--G--~~~-vi~~~~~~~~~~~~~~~~ 261 (380)
.+...+.++++||-+|+|. |..+..+++..+ ..++++++.+++..+.+++. . ... ++..+... + ..
T Consensus 12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~-----~~ 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG--L-----PF 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc--C-----CC
Confidence 4566788999999999875 888889998773 23899999999988888764 1 111 11111110 0 01
Q ss_pred hCCCccEEEEcc-----c-ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECT-----G-NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+-.. . ....+..+.++|+++ |.+++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEec
Confidence 224688877532 1 224678999999997 99887653
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.18 Score=46.97 Aligned_cols=34 Identities=38% Similarity=0.485 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|...++.+...|.++++.++.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3679999999999999999989999999999875
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.2 Score=44.55 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=46.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.++++||+|+ |++|...++.....|+ +|++++++. ++.+...+ +....+..+-.+ . +.+.+.. +.+|+++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~~-~~~~~~~~D~~~--~-~~~~~~~-~~iDilVnn 86 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESNDE-SPNEWIKWECGK--E-ESLDKQL-ASLDVLILN 86 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhcc-CCCeEEEeeCCC--H-HHHHHhc-CCCCEEEEC
Confidence 3578999997 9999999888888899 888887776 33222211 111222112121 1 1233332 369999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 87 AG~ 89 (245)
T PRK12367 87 HGI 89 (245)
T ss_pred Ccc
Confidence 875
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.16 Score=46.84 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++.. +...+.... .+.+.+ . ..|+|+.+..
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~~~----~l~e~l----~-~aDvvv~~lP 199 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAGRE----ELSAFL----S-QTRVLINLLP 199 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecccc----cHHHHH----h-cCCEEEECCC
Confidence 57899999999999999999999999 8999987654321 221111100 122222 1 3577776665
Q ss_pred Chhh----H-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NIDN----M-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~~----~-~~~~~~l~~~~G~~v~~g~ 298 (380)
..+. + ...++.++++ ..++.+|-
T Consensus 200 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 227 (312)
T PRK15469 200 NTPETVGIINQQLLEQLPDG-AYLLNLAR 227 (312)
T ss_pred CCHHHHHHhHHHHHhcCCCC-cEEEECCC
Confidence 3221 1 2456667775 66666653
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.24 Score=45.85 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcC---Cc-eE--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFG---VT-DF--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG---~~-~v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...+......|+ +|+.++++.++.+.+ +++. .. .+ .|..+.+ ...+.+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLD-SVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHH-HHHHHHHHHHHhCC
Confidence 4678999997 9999998888888898 899998888775543 3332 11 12 2333221 1222222221 23
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
.+|++|++.|
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 6999999987
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.21 Score=41.00 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=48.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC--hhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHh--CCC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS--SKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMT--NGG 265 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~--~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~~ 265 (380)
+++||+|+ +++|...+......|..+|+.+.++ .++.+.+ +..+... ++..+-.+ ..+...+.+.. .+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899997 9999997777777777688888888 4443333 3345322 22222122 12333333332 237
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 9999999885
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=43.94 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-EecCCCCC-ccHHHHHHHHhC--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FVNTSEHD-RPIQEVIAEMTN--GG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~ 265 (380)
+++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ .+... ++..+-.+ ..+.+.+..... ++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999997 9999999888888899 89888888776544322 23222 22222222 113333333221 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 8999999873
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.22 Score=44.40 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=48.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCceEecCCCCC-ccHHHHHHHHh--CCCccEE
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTDFVNTSEHD-RPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~vi~~~~~~-~~~~~~~~~~~--~~~~d~v 269 (380)
++||+|+ +++|.+.+......|+ +|+.+++++++.+.+. +.+....+..+-.+ ..+.+.+++.. -+++|++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 6899987 9999998888888899 8999988877654332 22322222222222 11333333222 2379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 81 i~naG~ 86 (259)
T PRK08340 81 VWNAGN 86 (259)
T ss_pred EECCCC
Confidence 999874
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.074 Score=48.40 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHHhCCCcc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
.++|++||=+|.| .|.+++..+| +|+++|++++.++...+.+++ -|.. .+......+ . ..+.||
T Consensus 159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~-------~~~~~d 227 (295)
T PF06325_consen 159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--L-------VEGKFD 227 (295)
T ss_dssp SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--T-------CCS-EE
T ss_pred ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--c-------ccccCC
Confidence 5778888878764 2555555444 699899999999987766655 2322 221111111 1 124799
Q ss_pred EEEEcccChh---hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 268 RSVECTGNID---NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 268 ~v~d~~g~~~---~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+|+-.+-..- ......++++++ |.+++.|...
T Consensus 228 lvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~ 262 (295)
T PF06325_consen 228 LVVANILADVLLELAPDIASLLKPG-GYLILSGILE 262 (295)
T ss_dssp EEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred EEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence 9986655422 344566778886 9999988764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.13 Score=45.70 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=47.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eE--ecCCCCCccHHHHHHHHh--CCCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DF--VNTSEHDRPIQEVIAEMT--NGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~v--i~~~~~~~~~~~~~~~~~--~~~~d~ 268 (380)
.++++||+|+ |.+|...++.+...|+ +|+.++++.++ +..+.. .+ .|..+.+ .+.+.+.... -+.+|+
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~ 78 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRDPD-QVAALVDAIVERHGRLDV 78 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCCHH-HHHHHHHHHHHHcCCCCE
Confidence 4689999987 9999998888888899 88888887765 112221 12 2332221 1223232221 136899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
+|.+.|.
T Consensus 79 vi~~ag~ 85 (252)
T PRK07856 79 LVNNAGG 85 (252)
T ss_pred EEECCCC
Confidence 9999874
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=44.69 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEe--cCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+ .+.. ..+ |..+.. ...+.+++... +
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME-QIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHcC
Confidence 3578999987 9999999988888899 89999888766544332 2322 122 332221 12222332221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 68999998873
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.31 Score=39.23 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=28.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+|+|+|+|++|...+..+-..|.++++.++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48899999999999999999999888888754
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=45.76 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=49.3
Q ss_pred CCCeEEEEcCC---HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--E--ecCCCCC--ccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGLG---AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--F--VNTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~g---~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--v--i~~~~~~--~~~~~~~~~~~~~~ 265 (380)
.++++||+|++ ++|.+.++.....|+ +|+.+.++++..+.++++.... . .|..+.+ ..+.+.+.+.. +.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV-GK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh-CC
Confidence 46899999874 899998888888899 8888877754444455542211 2 2333221 11223333322 47
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 84 iD~lv~nAg~ 93 (252)
T PRK06079 84 IDGIVHAIAY 93 (252)
T ss_pred CCEEEEcccc
Confidence 9999998873
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.22 Score=44.85 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc---C--Cc-eEe--cCCCCCccHHHHHHHHhC-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF---G--VT-DFV--NTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l---G--~~-~vi--~~~~~~~~~~~~~~~~~~- 263 (380)
+++++||+|+ |.+|...++.+...|+ +|+.++++.++.+... ++ + .. .++ |..+.+ .+.+.+.....
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDED-QVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHH-HHHHHHHHHHHH
Confidence 3679999997 9999999998888999 8999988876644332 22 1 11 122 332221 23333333221
Q ss_pred -CCccEEEEcccC
Q 016933 264 -GGVDRSVECTGN 275 (380)
Q Consensus 264 -~~~d~v~d~~g~ 275 (380)
+++|++|.+.|.
T Consensus 84 ~~~~d~li~~ag~ 96 (276)
T PRK05875 84 HGRLHGVVHCAGG 96 (276)
T ss_pred cCCCCEEEECCCc
Confidence 368999999873
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.21 Score=44.50 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c-----CCce-E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F-----GVTD-F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l-----G~~~-v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |++|...+......|+ +|+.+++++++.+.+.+ + +... + .|..+.+ .+.+.+....
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAA-SVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHH-HHHHHHHHHHHH
Confidence 4688999997 9999998888888899 88888888776554332 2 2211 2 2332221 1223232221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+.+|+++++.|.
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1379999999874
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.16 Score=45.30 Aligned_cols=79 Identities=28% Similarity=0.300 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCce---EecCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTD---FVNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~---vi~~~~~~~~~~~~~~~~~--~~~ 265 (380)
+++++||+|+ |.+|.+.++.+...|+ +|+.+++++...+..++ .+.+. ..|..+.+ ...+.+.+.. -+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLETYA-GAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHH-HHHHHHHHHHHHcCC
Confidence 3678999997 9999998888888899 88888887543333333 34332 23333321 1223333322 137
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++++++|.
T Consensus 85 id~lv~nAg~ 94 (260)
T PRK12823 85 IDVLINNVGG 94 (260)
T ss_pred CeEEEECCcc
Confidence 9999999873
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.24 Score=43.83 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=29.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.+|+|+|+|++|..+++.+...|.++++.++.+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 679999999999999999999999888888654
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.43 Score=36.66 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=61.8
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|.. ++.-+..+. +.+++..-..++.++-+++....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~~~~---~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDATDP---EVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-TTSH---HHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccchhh---hHHhhcCccccCEEEEccCCHHH
Confidence 5788999999999999998665 899999999999999999964 443333332 23444333378999888877433
Q ss_pred ---HHHHHHHhhcCCcEEEEE
Q 016933 279 ---MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 279 ---~~~~~~~l~~~~G~~v~~ 296 (380)
+...++.+.+. .+++..
T Consensus 76 n~~~~~~~r~~~~~-~~ii~~ 95 (116)
T PF02254_consen 76 NLLIALLARELNPD-IRIIAR 95 (116)
T ss_dssp HHHHHHHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHHHHCCC-CeEEEE
Confidence 22344444554 555533
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.022 Score=46.43 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=56.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC----CCccHHHHHHHHhCCCccEEEEccc
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE----HDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~----~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
|+|+|+|++|.+.+..++..|. .|..+.+++ +.+.+++-|........+ ........ ....+.+|++|-|+=
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence 6899999999998888877998 898898888 888787766532111100 00000000 112247999999986
Q ss_pred Chhh---HHHHHHHhhcCCcEEEEEcCC
Q 016933 275 NIDN---MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 275 ~~~~---~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+. +..+...+.++ ..++++...
T Consensus 77 a~~~~~~l~~l~~~~~~~-t~iv~~qNG 103 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPN-TTIVSLQNG 103 (151)
T ss_dssp GGGHHHHHHHHCTGEETT-EEEEEESSS
T ss_pred ccchHHHHHHHhhccCCC-cEEEEEeCC
Confidence 6332 33333334443 566666543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.2 Score=44.58 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c--CCce-E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F--GVTD-F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l--G~~~-v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ . +.+. . .|..+.+ .+.+.+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDE-DRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHH-HHHHHHHHHHHH
Confidence 4789999997 9999999998888999 89998888876554432 1 2221 1 2332221 1222222221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++.+.|.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 1379999999985
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.54 Score=40.58 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.|++|||+|+|.+|.-=+.+....|+ +|+++.... +.+..+.+-+-...+. ...+ . ..+ ..+++||-++
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~----~--~~~--~~~~lviaAt 80 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEEGKIKWIE-REFD----A--EDL--DDAFLVIAAT 80 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHhcCcchhh-cccC----h--hhh--cCceEEEEeC
Confidence 46899999999999998888889999 777775554 3333333322211111 1111 0 011 1488999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
+.++.-....+...+. +..+.+........+.++...-...+++.-+
T Consensus 81 ~d~~ln~~i~~~a~~~-~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIs 127 (210)
T COG1648 81 DDEELNERIAKAARER-RILVNVVDDPELCDFIFPAIVDRGPLQIAIS 127 (210)
T ss_pred CCHHHHHHHHHHHHHh-CCceeccCCcccCceecceeeccCCeEEEEE
Confidence 9866666777777775 8888776655444444433322244455433
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.52 Score=41.42 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHHH----HHHhcCCce-EecCCCCC-ccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRFE----EAKKFGVTD-FVNTSEHD-RPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~----~~~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...+......|+ +++.+.++. ++.+ .+++.+... .+..+-.+ ..+.+.+.+.. -+
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4688999987 9999999988888899 666665543 2222 223334321 22222122 11223233221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (245)
T PRK12937 83 RIDVLVNNAGV 93 (245)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=46.56 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=51.2
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh----HHHHHHhcC-C-ceEecCCCCC--ccHHHHHHHHhCC
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK----RFEEAKKFG-V-TDFVNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~----~~~~~~~lG-~-~~vi~~~~~~--~~~~~~~~~~~~~ 264 (380)
-+|+.|||+|+ +++|.+.++-...+|+ +++..+.+.+ ..+.+++.| + .++.|..+.+ ....+++++.. |
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~-G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV-G 113 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc-C
Confidence 46899999987 8999886666666788 7877777654 334444445 2 2345554433 12334444433 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++++.+|-
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 79999998884
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.19 Score=44.82 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCce-E--ecCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTD-F--VNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~ 265 (380)
.++++||+|+ |.+|...+..+...|+ +|+.++++++..+.+++ .+... . .|..+. ..+.+.+.+.. .+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRDP-ASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCH-HHHHHHHHHHHHHcCC
Confidence 4688999987 9999998888888899 89999887754444333 23321 2 222221 11222222221 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 83 id~vi~~ag~ 92 (263)
T PRK08226 83 IDILVNNAGV 92 (263)
T ss_pred CCEEEECCCc
Confidence 8999998884
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.19 Score=44.63 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=48.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-H-HHH---HHhcCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-R-FEE---AKKFGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-~-~~~---~~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ +.+|.+.++.....|+ +|+.++++.+ . .+. +++.+... .+ |..+.+ .+.+.+.+.. -
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKA-DLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 4679999987 9999999998888999 8888877643 2 222 23334322 22 332221 1333333322 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 85 g~id~li~~ag~ 96 (254)
T PRK06114 85 GALTLAVNAAGI 96 (254)
T ss_pred CCCCEEEECCCC
Confidence 478999999884
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.21 Score=44.25 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=50.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-E--ecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-F--VNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-v--i~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
+++|+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ ++.+. . .|..+.+ .+.+.+..... +++|+++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRA-AIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 6899997 9999998888888899 89999998887765544 44322 1 2332221 23333333222 3699999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
.+.|.
T Consensus 80 ~~ag~ 84 (248)
T PRK10538 80 NNAGL 84 (248)
T ss_pred ECCCc
Confidence 98874
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.26 Score=43.89 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=48.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCc--eEecCCCCC-ccHHHHHHHHhC--C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVT--DFVNTSEHD-RPIQEVIAEMTN--G 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~--~vi~~~~~~-~~~~~~~~~~~~--~ 264 (380)
++++||+|+ |.+|...+......|+ +|+.++++.++.+.+.+ .+.. ..+..+-.+ ......+.+... +
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999997 9999998888888899 88888888765543321 2211 122222222 112222322221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 78999999873
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.15 Score=44.67 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=48.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eEe--cCCCCCccHHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DFV--NTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~vi--~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
.++++||+|+ |.+|...+..+...|+.+|+.++++.++.+. .+.. .++ |..+.+ .+.+.+... +.+|++|
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~-~~~~~~~~~--~~id~vi 78 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPA-SVAAAAEAA--SDVTILV 78 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHH-HHHHHHHhc--CCCCEEE
Confidence 4578999987 9999999998888898678888888776543 2221 122 322221 122222221 2589999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
.+.|.
T Consensus 79 ~~ag~ 83 (238)
T PRK08264 79 NNAGI 83 (238)
T ss_pred ECCCc
Confidence 99886
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.36 Score=37.99 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=58.9
Q ss_pred EEEEcC-CHHHHHHHHHHHHcC--CcEEEEEcCChh--H-HHHHHhcCCceEecCCCCC-ccHHH---------------
Q 016933 199 VAVFGL-GAVGLAAAEGARIAG--ASRIIGVDRSSK--R-FEEAKKFGVTDFVNTSEHD-RPIQE--------------- 256 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g--~~~vi~~~~~~~--~-~~~~~~lG~~~vi~~~~~~-~~~~~--------------- 256 (380)
|.|+|+ |.+|.-++.+.+... . +|+++..... + .+.++++.+..+...++.. ..+.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~ 79 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP 79 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence 578898 999999999999886 5 6766654332 2 3455668888876555431 11111
Q ss_pred -HHHHHhC-CCccEEEEcccChhhHHHHHHHhhcCCcEEEE
Q 016933 257 -VIAEMTN-GGVDRSVECTGNIDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 257 -~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~ 295 (380)
.+.++.. ..+|+++.++.+-.-+.-.+.+++.+ -++.+
T Consensus 80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaL 119 (129)
T PF02670_consen 80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIAL 119 (129)
T ss_dssp HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEE
Confidence 2223333 37899998877767788888888874 44443
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.25 Score=43.39 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=29.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+.+|+|+|+|++|...+..+...|.++++.++.+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4679999999999999999999999888888743
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.39 Score=39.97 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=47.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~~ 265 (380)
+++.++|+|+ +++|...+......|+ +|+.++++.++.+.. ++.+... .+..+-.+ ..+.+.+.+.. -+.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4688999997 8899998887777898 898888877654332 2234322 22222222 11222222211 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 94 iDilVnnAG~ 103 (169)
T PRK06720 94 IDMLFQNAGL 103 (169)
T ss_pred CCEEEECCCc
Confidence 8888888764
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=43.92 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=50.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
++++++|+|+ |.+|...+......|+ +|+.+++++++.+.+ ++.|... . .|..+. ..+.+.+..... +
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADE-EAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCH-HHHHHHHHHHHHhcC
Confidence 5789999997 9999998887777899 899998887664433 2334322 2 233222 123333333221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++.+.|.
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 68999999884
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.52 Score=42.93 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-H----HHHHhcCCce-EecCCCCC-ccHHHHHHHHh--C
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-F----EEAKKFGVTD-FVNTSEHD-RPIQEVIAEMT--N 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~----~~~~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~ 263 (380)
-+++++||+|+ |.+|...+......|+ +|+.+.+++++ . +.++..|.+. ++..+-.+ ..+.+.+.+.. -
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34688999997 9999998887777899 78887766422 2 2223334322 22222221 11222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|.+.|.
T Consensus 123 ~~iD~lI~~Ag~ 134 (290)
T PRK06701 123 GRLDILVNNAAF 134 (290)
T ss_pred CCCCEEEECCcc
Confidence 368999998874
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.24 Score=44.31 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=47.1
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~--~~~~~~~~~~~~ 263 (380)
+++++||+|+ +++|.+.+......|+ +|+...+.++..+.+++ .|.... .|..+.+ ..+.+.+.+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW- 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh-
Confidence 4678999984 4899998888878899 78777655433333333 343222 2333221 11223333322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 83 g~iD~lVnnAG~ 94 (261)
T PRK08690 83 DGLDGLVHSIGF 94 (261)
T ss_pred CCCcEEEECCcc
Confidence 379999999874
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.23 Score=44.19 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-Ee--cCCCCCccHHHHHHHHh--CCCccE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVDR 268 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d~ 268 (380)
++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ ++... .+ |..+.+ ...+.+.+.. -+.+|+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTRQD-SIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHH-HHHHHHHHHHHHcCCCCE
Confidence 578999997 9999998888888899 89999898877655443 33211 12 222221 1222222221 136899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++.+.|.
T Consensus 84 li~~ag~ 90 (257)
T PRK07067 84 LFNNAAL 90 (257)
T ss_pred EEECCCc
Confidence 9998763
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.25 Score=43.95 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=48.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCc--eEecCCCCCc-cHHHHHHHHhC--CCccE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVT--DFVNTSEHDR-PIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~--~vi~~~~~~~-~~~~~~~~~~~--~~~d~ 268 (380)
++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ +... ..+..+-.+. .+.+.+.+... +++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999997 9999998887777898 89999888776654432 3211 1222222221 12222322211 36899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++.+.|.
T Consensus 81 vi~~ag~ 87 (257)
T PRK07074 81 LVANAGA 87 (257)
T ss_pred EEECCCC
Confidence 9999874
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.26 Score=45.23 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-Hhc-----CCc-eE--ecCCCCCccHHHHHHHHhC-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKF-----GVT-DF--VNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~l-----G~~-~v--i~~~~~~~~~~~~~~~~~~- 263 (380)
.++++||+|+ |.+|...+......|+ +|+.+.++.++.+.+ +++ +.. .+ .|..+.+ ...+.+.++..
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~-~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA-SVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH-HHHHHHHHHHhh
Confidence 5689999997 9999998887777899 888888887664432 111 111 12 2332221 13233333221
Q ss_pred -CCccEEEEcccC
Q 016933 264 -GGVDRSVECTGN 275 (380)
Q Consensus 264 -~~~d~v~d~~g~ 275 (380)
+++|++|.+.|.
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 369999999873
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.24 Score=43.75 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=48.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c--CCc-eE--ecCCCCCccHHHHHHHHhC--
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F--GVT-DF--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l--G~~-~v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
++++||+|+ |.+|...+......|+ +|+.++++.++.+.+.+ . +.. .+ .|..+.+ .+.+.+.++..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHD-QVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 468999997 9999987777777798 88888888877654432 1 221 12 2333321 23333333221
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+++|++|.+.|
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 36999999987
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.083 Score=46.71 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=66.7
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEec--CCC-CCccHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVN--TSE-HDRPIQEVI 258 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~--~~~-~~~~~~~~~ 258 (380)
+....+++||++|+=-|.| .|.++..+++..| -++|+..+..+++.+.+++ .|....+. ..+ ....+.+
T Consensus 32 I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~-- 108 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE-- 108 (247)
T ss_dssp HHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST--
T ss_pred HHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc--
Confidence 4556889999999987754 3667778887775 3499999999998887765 56543211 111 1111210
Q ss_pred HHHhCCCccEE-EEcccChhhHHHHHHHh-hcCCcEEEEEcCC
Q 016933 259 AEMTNGGVDRS-VECTGNIDNMISAFECV-HDGWGVAVLVGVP 299 (380)
Q Consensus 259 ~~~~~~~~d~v-~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~ 299 (380)
. ....+|.| +|.-.....+..+.+.| +++ |+++.+-..
T Consensus 109 -~-~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP~ 148 (247)
T PF08704_consen 109 -E-LESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSPC 148 (247)
T ss_dssp -T--TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEESS
T ss_pred -c-ccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence 0 12367876 66666667899999999 886 999988653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.32 Score=43.24 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCCce-EecCCCCC-ccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGVTD-FVNTSEHD-RPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~~d 267 (380)
.|+++||+|+ |.+|.+.++.....|+ +|+.+++++. ..+.+++.+... .+..+-.+ ....+.+.+... +.+|
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D 87 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID 87 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3689999997 9999999998888899 8887765432 233344444322 22222222 112222322211 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 88 ~li~~Ag~ 95 (253)
T PRK08993 88 ILVNNAGL 95 (253)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.59 Score=41.06 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=72.5
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.....++|++||=+++| +|-+|+.+++..|-.+|+++|.+++-++.+++- |... +.+-..+ . +.+. +...
T Consensus 45 ~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~d--A-e~LP-f~D~ 118 (238)
T COG2226 45 SLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGD--A-ENLP-FPDN 118 (238)
T ss_pred HhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEec--h-hhCC-CCCC
Confidence 34455689999877654 688999999999866999999999998888763 2221 1111111 0 0011 1223
Q ss_pred CccEEEEcccC------hhhHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 265 GVDRSVECTGN------IDNMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 265 ~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
.||+|.-+.|- +..+.++.+.|+|+ |+++++....+
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p 160 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP 160 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence 68888777663 35688999999997 99999987654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.13 Score=46.00 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=47.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
.|+++||+|+ +.+|.+.+......|+ +|+.+++++++.. .... ..|..+.+ .+.+.+.+... +.+|+++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~~~-~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSNKE-QVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 4689999997 9999999988888999 8888888765432 1111 12333321 23333333221 3699999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 78 ~~Ag~ 82 (258)
T PRK06398 78 NNAGI 82 (258)
T ss_pred ECCCC
Confidence 98874
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.35 Score=44.71 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|+++.|+|.|.+|.+.+..++.+|. +|+..++++. .+..+..++.++- +.+.++ ..|++.-..
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~~--------l~ell~-----~sDii~l~~ 208 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYVD--------LDELLA-----ESDIISLHC 208 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceecc--------HHHHHH-----hCCEEEEeC
Confidence 358999999999999999999999999 9999988765 4444445554321 222222 357764443
Q ss_pred -cChhh---H-HHHHHHhhcCCcEEEEEcC
Q 016933 274 -GNIDN---M-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 -g~~~~---~-~~~~~~l~~~~G~~v~~g~ 298 (380)
..+++ + ...++.|+++ ..+|.++-
T Consensus 209 Plt~~T~hLin~~~l~~mk~g-a~lVNtaR 237 (324)
T COG1052 209 PLTPETRHLINAEELAKMKPG-AILVNTAR 237 (324)
T ss_pred CCChHHhhhcCHHHHHhCCCC-eEEEECCC
Confidence 33332 1 2677888886 77776654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.25 Score=43.54 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHH----HHhcCCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE----AKKFGVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~----~~~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|...+......|+ +|++++++.++... +++.+... ++ |..+. ..+.+.+.+... +
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDR-AALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHHhC
Confidence 4578999997 9999998888877899 89999888654432 23333321 22 22221 112222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++|.+.|.
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 68999999864
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=44.24 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=47.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCC-CccEEEEc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNG-GVDRSVEC 272 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~ 272 (380)
++++||+|+ |.+|...+..+...|+ +|+.+.++.++ ...... ..|..+.+ .+.+.+.+.... +.|+++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~d~vi~~ 75 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLADIE-QTAATLAQINEIHPVDAIVNN 75 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCCHH-HHHHHHHHHHHhCCCcEEEEC
Confidence 578999997 9999998888888898 89888887654 112211 12332221 233333333322 68999998
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 76 ag~ 78 (234)
T PRK07577 76 VGI 78 (234)
T ss_pred CCC
Confidence 874
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.32 Score=42.35 Aligned_cols=95 Identities=25% Similarity=0.310 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--EecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--FVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
-+|.+||=+|+|+ |+++.-+|+ +|+ .|++++.+++..+.++.-.... -++|... ..+.+... ++.||+|+.
T Consensus 58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~---~~edl~~~-~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQA---TVEDLASA-GGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchhh---hHHHHHhc-CCCccEEEE
Confidence 4678888888753 677777776 578 9999999999999887532221 1444432 22233222 148999976
Q ss_pred c-----ccChh-hHHHHHHHhhcCCcEEEEE
Q 016933 272 C-----TGNID-NMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~-----~g~~~-~~~~~~~~l~~~~G~~v~~ 296 (380)
. +..++ .+..+.+.++|+ |.+.+-
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~-G~lf~S 160 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPG-GILFLS 160 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCC-cEEEEe
Confidence 3 44433 566899999997 877654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.31 Score=42.96 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=47.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eE--ecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DF--VNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~v--i~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.++||+|+ |.+|...+......|+ +|+.+++++++.+.+.+.+.. .. .|..+. ..+.+.+++. ....|.++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~-~~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTDH-PGTKAALSQL-PFIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCCH-HHHHHHHHhc-ccCCCEEEEc
Confidence 56899997 9999987777777899 899999998887766554321 11 233332 1233333332 2245776665
Q ss_pred cc
Q 016933 273 TG 274 (380)
Q Consensus 273 ~g 274 (380)
.|
T Consensus 79 ag 80 (240)
T PRK06101 79 AG 80 (240)
T ss_pred Cc
Confidence 54
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.31 Score=42.23 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|...++.+...|.++++.++.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4679999999999999999988999889988876
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.24 Score=43.91 Aligned_cols=78 Identities=19% Similarity=0.437 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-Hhc----CCce----EecCCCCCccHHHHHHHHhC-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKF----GVTD----FVNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~l----G~~~----vi~~~~~~~~~~~~~~~~~~- 263 (380)
+++++||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+ +++ +... ..|..+.+ .+.+.+.+...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQE-SLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHH-HHHHHHHHHHHH
Confidence 4689999997 9999998888888899 888888887765443 222 2221 22333322 23333333222
Q ss_pred -CCccEEEEccc
Q 016933 264 -GGVDRSVECTG 274 (380)
Q Consensus 264 -~~~d~v~d~~g 274 (380)
+++|+++++.+
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 36899999885
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.28 Score=45.94 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-----ceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-----TDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-----~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.|++++|+|.|.+|...++.++.+|+ +|++.+++..+... ..++. ....+.......+.+.++ ..|+|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~ell~-----~aDiV 230 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKGGHEDIYEFAG-----EADIV 230 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccCcccCHHHHHh-----hCCEE
Confidence 57899999999999999999999999 99999876332111 11110 000000000001323222 36888
Q ss_pred EEcccChh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 270 VECTGNID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 270 ~d~~g~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
+-+..... .+ ...+..|+++ ..+|.++-
T Consensus 231 vl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaR 263 (347)
T PLN02928 231 VLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIAR 263 (347)
T ss_pred EECCCCChHhhcccCHHHHhcCCCC-eEEEECCC
Confidence 87765321 12 3667778886 77776653
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.31 Score=44.16 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCCH-HHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 193 PERGSSVAVFGLGA-VGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 193 ~~~g~~vlI~G~g~-~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.-.|++++|+|.|. +|...++++...|+ +|++..+..+. +.+ .. ..+|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~---------------------L~~----~~-~~aDIvI~ 208 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN---------------------LPE----LV-KQADIIVG 208 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh---------------------HHH----Hh-ccCCEEEE
Confidence 35788999999976 99999999999999 88877542111 111 11 25899999
Q ss_pred cccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 272 CTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++|.+..+. .+.++++ ..++.+|..
T Consensus 209 AtG~~~~v~--~~~lk~g-avViDvg~n 233 (283)
T PRK14192 209 AVGKPELIK--KDWIKQG-AVVVDAGFH 233 (283)
T ss_pred ccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence 999866443 3557886 777777754
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.08 Score=45.53 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=67.7
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC-
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~- 263 (380)
.+..+.++||-+|.+ +|+.++.+|+.+ +. +|++++.++++.+.+++ .|...-+.....+ ..+.+.++..
T Consensus 41 ~~~~~~k~vLEIGt~-~GySal~la~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd--a~~~l~~l~~~ 116 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTF-TGYSALWLAEALPEDG-KITTIEIDPERAEIARENFRKAGLDDRIEVIEGD--ALEVLPELAND 116 (205)
T ss_dssp HHHHT-SEEEEESTT-TSHHHHHHHHTSTTTS-EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES---HHHHHHHHHHT
T ss_pred HHhcCCceEEEeccc-cccHHHHHHHhhcccc-eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEec--cHhhHHHHHhc
Confidence 334455789999874 588899999877 34 99999999998888754 5654322222222 4444444432
Q ss_pred ---CCccEEE-EcccC--hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 ---GGVDRSV-ECTGN--IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ---~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.||.|| |+-=. ...+..++++++++ |.++.-...
T Consensus 117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN~l 157 (205)
T PF01596_consen 117 GEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADNVL 157 (205)
T ss_dssp TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEETTT
T ss_pred cCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcccc
Confidence 3699985 54321 23577888999996 877766543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.29 Score=45.58 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 89999886543
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.31 Score=43.93 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=49.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
++++++|+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+. +.+... . .|..+.+ .+.+.+..... +
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKE-SLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH-HHHHHHHHHHHHcC
Confidence 4688999987 9999999988888899 8888888876543332 233321 2 2222221 12222222221 3
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
.+|++|.+.|
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7999999987
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.26 Score=43.30 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=49.5
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHhC--CCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMTN--GGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~~ 266 (380)
+.+++|+|+ |.+|...+..+...|+ +|+.++++.++.+.+ +..+... ++..+-.+ ..+.+.++.... +++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 578999987 9999998888778899 899998887665433 2233222 22222222 123333333221 378
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++|.+.|.
T Consensus 86 d~vi~~ag~ 94 (239)
T PRK07666 86 DILINNAGI 94 (239)
T ss_pred cEEEEcCcc
Confidence 999999874
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.49 Score=38.81 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=55.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce------EecCCC-CCccHHHHHHHHhCCCccEEE
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD------FVNTSE-HDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~------vi~~~~-~~~~~~~~~~~~~~~~~d~v~ 270 (380)
+|.|+|+|..|.+.+..+...|. +|....++++..+.+++-+... .+...- ...++.+.+ .+.|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-----~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-----EDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-----TT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-----CcccEEE
Confidence 58899999999999999999997 9999999998888877643211 010000 001143333 2579999
Q ss_pred EcccChhhHHHHHHHhhc
Q 016933 271 ECTGNIDNMISAFECVHD 288 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~ 288 (380)
-++.+ ......++.+.+
T Consensus 75 iavPs-~~~~~~~~~l~~ 91 (157)
T PF01210_consen 75 IAVPS-QAHREVLEQLAP 91 (157)
T ss_dssp E-S-G-GGHHHHHHHHTT
T ss_pred ecccH-HHHHHHHHHHhh
Confidence 99987 556677777766
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=43.40 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=50.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+......|+ +|+.+++++++.+.+ +..+... .+ |..+.+ .+.+.+..+. -+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQ-EVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHH-HHHHHHHHHHHhcC
Confidence 4678999997 9999998888888899 898898887665433 2223322 22 322221 1222232221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.+.|.
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 69999999874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.31 Score=42.12 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=63.3
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.....++++++||=+|+|. |..+..+++.. . +|++++.+++..+.+++ .|...+ .....+ ..+... ..
T Consensus 71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~~d--~~~~~~--~~ 142 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRHGD--GWKGWP--AY 142 (212)
T ss_pred HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEECC--cccCCC--cC
Confidence 4556788999999998753 55555666654 3 89999999887766654 444322 111111 100000 11
Q ss_pred CCccEEEEcccChhhHHHHHHHhhcCCcEEEEEc
Q 016933 264 GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 264 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+.||+|+-..........+.+.|+++ |+++..-
T Consensus 143 ~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~ 175 (212)
T PRK00312 143 APFDRILVTAAAPEIPRALLEQLKEG-GILVAPV 175 (212)
T ss_pred CCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence 37999877655546677888999997 9887543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.29 Score=46.72 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=50.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH-------HHHhc-CCceE-ecCCCCCccHHHHHHHH
Q 016933 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE-------EAKKF-GVTDF-VNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-------~~~~l-G~~~v-i~~~~~~~~~~~~~~~~ 261 (380)
....+.+|||+|+ |.+|...+..+...|+ +|++++++.++.+ ..... ++..+ .|..+.+ .+.+.++..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~-~l~~~~~~~ 133 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDAD-SLRKVLFSE 133 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHH-HHHHHHHHh
Confidence 3456789999997 9999999988888898 8888888765421 11112 33222 2333321 233333322
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
+.++|+||+|.+.
T Consensus 134 -~~~~D~Vi~~aa~ 146 (390)
T PLN02657 134 -GDPVDVVVSCLAS 146 (390)
T ss_pred -CCCCcEEEECCcc
Confidence 1169999998864
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.4 Score=42.52 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=67.2
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh--
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~-- 262 (380)
.+..+.++||-+|. .+|+.++.+|+.+ +. ++++++.++++.+.+++ .|...-+.....+ ..+.+.++.
T Consensus 75 ~~~~~ak~iLEiGT-~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~--a~e~L~~l~~~ 150 (247)
T PLN02589 75 LKLINAKNTMEIGV-YTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFREGP--ALPVLDQMIED 150 (247)
T ss_pred HHHhCCCEEEEEeC-hhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc--HHHHHHHHHhc
Confidence 44455678888886 3688888999877 34 89999999988777654 5643333333333 455555543
Q ss_pred ---CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEc
Q 016933 263 ---NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 263 ---~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+.||.||-=... ...++.+++.++++ |.++.=.
T Consensus 151 ~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~DN 190 (247)
T PLN02589 151 GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGYDN 190 (247)
T ss_pred cccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEEcC
Confidence 2479998643332 24577889999996 8776543
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.15 Score=50.37 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=56.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cC-Cce-EecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FG-VTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG-~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+ ++ ... +...+ .+.... ..+|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~--------dl~~al-~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLD--------EMLACA-AEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHh--------hHHHHH-hcCCEEEEc
Confidence 6889999999999999999999998789999999888766654 53 221 11111 122221 268999999
Q ss_pred ccChhh--HHHHHHHh
Q 016933 273 TGNIDN--MISAFECV 286 (380)
Q Consensus 273 ~g~~~~--~~~~~~~l 286 (380)
++.+.. ....++.+
T Consensus 337 T~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 337 TSSETPLFLKEHVEAL 352 (519)
T ss_pred cCCCCCeeCHHHHHHh
Confidence 887543 33455544
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.67 Score=42.34 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=46.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh--hHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS--KRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~--~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~-- 262 (380)
+++++||+|+ |.+|.+.++.+...|+ +|+.+.++. ++.+.+ ++.|... . .|..+.+ .+.+.+.+..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEK-FARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHH-HHHHHHHHHHHH
Confidence 5678999997 9999998888888899 787775432 222222 2334322 1 2332221 1223333322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++.+.|.
T Consensus 126 ~g~id~lv~~Ag~ 138 (294)
T PRK07985 126 LGGLDIMALVAGK 138 (294)
T ss_pred hCCCCEEEECCCC
Confidence 1378999998763
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.85 Score=42.66 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-----------ceEecCCCCCccHHHHHHHHh
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-----------TDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-----------~~vi~~~~~~~~~~~~~~~~~ 262 (380)
...++|||+|+| .|.++..+++..+..+|++++.+++-.++++++.. ..+ ...-.| ..+.+.. .
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-~vvi~D--a~~fL~~-~ 223 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-NVHVCD--AKEFLSS-P 223 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-EEEECc--HHHHHHh-c
Confidence 445799999976 46677777777666699999999999999986210 111 000111 3333433 2
Q ss_pred CCCccEEEEcccC-----------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVECTGN-----------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~~g~-----------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.||+||--... .+.+..+.+.|+++ |.++....
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 3479997543321 23677889999997 99876643
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.24 Score=47.10 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.+.+|+|+|+|++|..++..+...|+++++.++.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45689999999999999999999999999999876
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.31 Score=42.87 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-EecCCCCC-ccHHHHHHHHhC--CCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FVNTSEHD-RPIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~~d~ 268 (380)
++.++||+|+ |.+|...+......|+ .|+...++.++.+.+ .+++... ++..+-.+ ..+.+.+.+... +++|+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI 83 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4678999997 9999998888888898 888887777666544 3344321 22222111 112222222211 36999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
+|.+.|.
T Consensus 84 vi~~ag~ 90 (245)
T PRK12936 84 LVNNAGI 90 (245)
T ss_pred EEECCCC
Confidence 9999884
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.32 Score=38.73 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=54.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-------------------hHHHH----HHhcCCc-eEecCCCCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-------------------KRFEE----AKKFGVT-DFVNTSEHD 251 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-------------------~~~~~----~~~lG~~-~vi~~~~~~ 251 (380)
..+|+|+|+|++|...+..+-..|+++++.++.+. .|.+. ++++... .+..+...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~- 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK- 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc-
Confidence 46899999999999988888888998888886432 12222 2233221 12111111
Q ss_pred ccH-HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEE
Q 016933 252 RPI-QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 252 ~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v 294 (380)
+ .+...++. .++|+||+|+.+......+.+..... +.-.
T Consensus 81 --~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~~~-~~p~ 120 (135)
T PF00899_consen 81 --IDEENIEELL-KDYDIVIDCVDSLAARLLLNEICREY-GIPF 120 (135)
T ss_dssp --CSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHHHT-T-EE
T ss_pred --cccccccccc-cCCCEEEEecCCHHHHHHHHHHHHHc-CCCE
Confidence 1 12223332 26899999998865555555555554 4433
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.87 Score=40.15 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHH----HHHHhcCCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRF----EEAKKFGVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~----~~~~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
+.++||+|+ |.+|...+.-....|+ +++.+.+ +.++. ..+++.+... . .|..+.+ .+...+.+... +
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTRE-GCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHH-HHHHHHHHHHHHcC
Confidence 578999997 9999988887778899 6655543 32222 2233344322 2 2332221 12222222211 3
Q ss_pred CccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 265 GVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 265 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
++|++|.+.|.. ...+.+.+.+++. |+++.++...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence 789999999831 0133445566675 8999887643
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.39 Score=42.15 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=29.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
..+|+|+|+|++|...+..+-..|.++++.+|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478999999999999999999999988888854
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.41 Score=42.48 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=29.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
..+|+|+|+|++|..++..+...|.++++.++.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478999999999999999999999988888864
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.36 Score=43.53 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCCh---hHHHHH-HhcCCceEecCCCCC-ccHHHHHHHHhC-
Q 016933 193 PERGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSS---KRFEEA-KKFGVTDFVNTSEHD-RPIQEVIAEMTN- 263 (380)
Q Consensus 193 ~~~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~---~~~~~~-~~lG~~~vi~~~~~~-~~~~~~~~~~~~- 263 (380)
.-.++++||+|+ +++|.+.+......|+ +|+.+.+++ ++.+.+ +++|....+..+-.+ ....+.+.+...
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 335689999986 5899998888888999 787776653 333323 334532222222222 112222332221
Q ss_pred -CCccEEEEcccC
Q 016933 264 -GGVDRSVECTGN 275 (380)
Q Consensus 264 -~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 86 ~g~iD~lv~nAG~ 98 (272)
T PRK08159 86 WGKLDFVVHAIGF 98 (272)
T ss_pred cCCCcEEEECCcc
Confidence 379999998873
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.42 Score=41.79 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=55.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh--cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK--FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~--lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.++|+|+|.+|...++.+...|. .|++++.++++.+...+ +.. +++.-+..+ .+.++++--..+|+++-++|.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~t~---~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGDATD---EDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEecCCC---HHHHHhcCCCcCCEEEEeeCC
Confidence 58899999999999999999998 89999999999877333 555 344333333 234555533489999999998
Q ss_pred h
Q 016933 276 I 276 (380)
Q Consensus 276 ~ 276 (380)
.
T Consensus 77 d 77 (225)
T COG0569 77 D 77 (225)
T ss_pred C
Confidence 3
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.39 Score=43.09 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=46.2
Q ss_pred CCCeEEEEcCC---HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--ecCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGLG---AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~g---~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|++ ++|.+.+......|+ +|+.++++++..+.+++ .+.... .|..+.+ .+.+.+.+...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDA-SIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHH-HHHHHHHHHHhhc
Confidence 46889999973 799988887777899 78877776322222322 222122 2333221 23333333222
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+.+|+++++.|
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 36999999987
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.42 Score=42.07 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=47.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--Ee--cCCCCCccHHHHHHHHhCCCcc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FV--NTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi--~~~~~~~~~~~~~~~~~~~~~d 267 (380)
++++|+|+ |.+|...+......|+ +|+++++++++.+.+.+ .+... ++ |..+. ....+.+.+.. ..+|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~-~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDT-ASHAAFLDSLP-ALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh-HHHHHHHHHHh-hcCC
Confidence 47899987 9999998888888899 89999998876544322 11111 22 22221 12333333332 2579
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++.+.|.
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99988764
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.3 Score=43.51 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH---HHHhcCCce-E--ecCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE---EAKKFGVTD-F--VNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~---~~~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~ 265 (380)
.++++||+|+ |.+|.+.++.....|+ +|+.+.++++..+ .+.+.+... + .|..+.+ ...+.+.+.. -+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPE-SAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHHcCC
Confidence 4689999997 9999999988888899 8888877632122 222334321 2 2332221 1222232221 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++.+.|.
T Consensus 92 id~li~~ag~ 101 (258)
T PRK06935 92 IDILVNNAGT 101 (258)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.23 Score=49.33 Aligned_cols=79 Identities=27% Similarity=0.408 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce---EecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD---FVNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~---vi~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
+++++||+|+ +++|.+.++.....|+ +|+.++++.++.+.+ ++++... ..|..+.+ .+.+.+..... +++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSDEA-QIREGFEQLHREFGRID 81 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHH-HHHHHHHHHHHHhCCCC
Confidence 5789999997 8999999998888999 899998888876544 4455432 23333322 23333333221 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 ~li~nag~ 89 (520)
T PRK06484 82 VLVNNAGV 89 (520)
T ss_pred EEEECCCc
Confidence 99999874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.48 Score=46.64 Aligned_cols=70 Identities=29% Similarity=0.300 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh-----HHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK-----RFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~-----~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.+++|+|+|+|.+|+.++.+++..|+ +|++++..+. ..+.+++.|.......... ....+|+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-----------~~~~~D~V 82 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGPT-----------LPEDTDLV 82 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-----------ccCCCCEE
Confidence 46789999999999999999999999 8888875542 2345667787544332111 01257788
Q ss_pred EEcccCh
Q 016933 270 VECTGNI 276 (380)
Q Consensus 270 ~d~~g~~ 276 (380)
+-+.|.+
T Consensus 83 v~s~Gi~ 89 (480)
T PRK01438 83 VTSPGWR 89 (480)
T ss_pred EECCCcC
Confidence 8777753
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.42 Score=42.19 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce--E--ecCCCCC-ccHHHHHHHH
Q 016933 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD--F--VNTSEHD-RPIQEVIAEM 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~--v--i~~~~~~-~~~~~~~~~~ 261 (380)
...+++++||+|+ |.+|...++.....|+ +|+.++++.++.+.+ ++.+... + .+....+ ..+.+.+..+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 3457889999997 9999998888777899 899998887654333 3333321 2 2332211 1233322222
Q ss_pred hC--CCccEEEEcccC
Q 016933 262 TN--GGVDRSVECTGN 275 (380)
Q Consensus 262 ~~--~~~d~v~d~~g~ 275 (380)
.. +.+|+++.+.|.
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 22 368999998764
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.95 Score=41.04 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC-C----ceEecCCCCC--ccHHHHHHHHhCC
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG-V----TDFVNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG-~----~~vi~~~~~~--~~~~~~~~~~~~~ 264 (380)
..+++.|+|+|+ +++|...+.-+...|. +|++..-.++..+.++..- - +..+|..+++ .+..+.+++..+.
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 356678999998 9999988888888899 8888876666655554422 1 1134444432 2344455555555
Q ss_pred -CccEEEEcccCh--------------------------hhHHHHHHHhhcCCcEEEEEcCCCCC
Q 016933 265 -GVDRSVECTGNI--------------------------DNMISAFECVHDGWGVAVLVGVPSKD 302 (380)
Q Consensus 265 -~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~~ 302 (380)
+.-.+++++|.. ......+..+++..||+|.++...+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR 169 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR 169 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC
Confidence 777788888731 34556777788777999999887653
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.34 Score=43.10 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=60.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc--CCceE-ecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF--GVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l--G~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
++.+|||+|+ |.+|...+..+...|+ +|+++.++.++....... ++..+ .|..+.. +.+.+....++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~----~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGS----DKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCCCH----HHHHHHhhcCCCEEE
Confidence 3578999997 9999999888877898 888888887765433221 23222 2333311 122222222689999
Q ss_pred EcccChh-------------hHHHHHHHhhcC-CcEEEEEcCC
Q 016933 271 ECTGNID-------------NMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 271 d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.+.|... ....+++.+... .++++.++..
T Consensus 91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 8876421 123445544432 2578877654
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.68 Score=41.93 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=56.1
Q ss_pred eEEEEcCCHHHHHH-HHHHHHcCCcEEEEE-cCChhH--HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLAA-AEGARIAGASRIIGV-DRSSKR--FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~a-i~la~~~g~~~vi~~-~~~~~~--~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|+|.+|... ..+.+.-+. ++.++ +.++++ +++.+++|...... + +...+. ...+|+||+++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~--~----~e~ll~---~~dIDaV~iaT 72 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE--G----VDGLLA---NPDIDIVFDAT 72 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC--C----HHHHhc---CCCCCEEEECC
Confidence 58899999999854 455554466 55544 444443 56777888754331 1 222221 13699999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+...+...+..++.. |+.++...
T Consensus 73 p~~~H~e~a~~al~a--Gk~VIdek 95 (285)
T TIGR03215 73 SAKAHARHARLLAEL--GKIVIDLT 95 (285)
T ss_pred CcHHHHHHHHHHHHc--CCEEEECC
Confidence 997777777777776 45554433
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=45.60 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
.++++||+|+|+.+.+++..+..+|+.++++++++.+|.+.+.+
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 46889999999999999888888999899999999888766543
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.1 Score=34.53 Aligned_cols=89 Identities=24% Similarity=0.383 Sum_probs=60.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHc--CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA--GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~--g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|+|+|.|..|...+.-.+.. +. +++ +.++++++.+. .+++|.. .+ .+ +.+.+.. ..+|+|+-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~--~~----~~~ll~~---~~~D~V~I~t 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY--TD----LEELLAD---EDVDAVIIAT 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE--SS----HHHHHHH---TTESEEEEES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch--hH----HHHHHHh---hcCCEEEEec
Confidence 578999999998887666655 44 554 55667666665 4568876 33 22 4333332 2699999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
....+.+.+..++..+ .-+++..+
T Consensus 71 p~~~h~~~~~~~l~~g--~~v~~EKP 94 (120)
T PF01408_consen 71 PPSSHAEIAKKALEAG--KHVLVEKP 94 (120)
T ss_dssp SGGGHHHHHHHHHHTT--SEEEEESS
T ss_pred CCcchHHHHHHHHHcC--CEEEEEcC
Confidence 9878888888888884 45556443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.32 Score=43.00 Aligned_cols=78 Identities=29% Similarity=0.389 Sum_probs=49.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHh--CCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~ 265 (380)
++++||+|+ |.+|...+......|+ +|++++++.++.+.+.+ .+... . .|..+. ..+.+.+.... -++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKE-DEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH-HHHHHHHHHHHHhcCC
Confidence 357999997 9999998888878899 89999898876655433 23221 1 233221 12333232222 236
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
.|++|.+.+.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999988864
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.35 Score=48.58 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=56.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+.++|.|.|.+|+..++..+..|. ++++++.++++.+.+++.|...+.- +..+ .+.+++..-+.+|.++-+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~G-D~~~---~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLG-NAAN---EEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEc-CCCC---HHHHHhcCccccCEEEEEcCCh
Confidence 678999999999999999999998 8999999999999999988755442 2222 2234333333788888777663
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.42 Score=43.20 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=65.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-ceE-ec-CCCC--CccHHHHHHHHhCCCccEE-E
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TDF-VN-TSEH--DRPIQEVIAEMTNGGVDRS-V 270 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~~v-i~-~~~~--~~~~~~~~~~~~~~~~d~v-~ 270 (380)
++|||+|+|. |-++-.++|.....++++++.+++=.++++++-. ... .+ ..-. -.+-.+-+++... ++|+| +
T Consensus 78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV 155 (282)
T ss_pred CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence 5999998754 5567788888888899999999999999988322 110 11 1000 0113444544433 79997 4
Q ss_pred EcccC---------hhhHHHHHHHhhcCCcEEEEE
Q 016933 271 ECTGN---------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 271 d~~g~---------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
|+... .+....+-++|+++ |.++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence 55433 46788999999997 988866
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.28 Score=45.12 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-cCCcEEEEEcCChhHHHHH-HhcCCc--eEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARI-AGASRIIGVDRSSKRFEEA-KKFGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~-~g~~~vi~~~~~~~~~~~~-~~lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
....+++|+|+|..|.+.+..+.. .+.++|.+.+++.++.+.+ .++... .+. ..+ +.+.+ .++|+|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~~----~~~av-----~~aDiV 192 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PLD----GEAIP-----EAVDLV 192 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-ECC----HHHHh-----hcCCEE
Confidence 355789999999999998888764 6777899999998876544 334321 111 111 33333 268999
Q ss_pred EEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 270 VECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 270 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.|+.+.+.+-.. .++++ -+++.+|...
T Consensus 193 itaT~s~~Pl~~~--~~~~g-~hi~~iGs~~ 220 (304)
T PRK07340 193 VTATTSRTPVYPE--AARAG-RLVVAVGAFT 220 (304)
T ss_pred EEccCCCCceeCc--cCCCC-CEEEecCCCC
Confidence 9998876543333 37886 8888998764
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.14 Score=48.03 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=47.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCC--ce-EecCCCCCccHHHHHHHHhCC-CccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGV--TD-FVNTSEHDRPIQEVIAEMTNG-GVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~--~~-vi~~~~~~~~~~~~~~~~~~~-~~d~ 268 (380)
++++|||+|+ |.+|...+..+...|. +|++++++..... ..+.++. .. .+..+-.+ .+.+.++..+ ++|+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD---AAKLRKAIAEFKPEI 78 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC---HHHHHHHHhhcCCCE
Confidence 4688999997 9999999999888898 8888877665432 2122221 11 12111111 1123333333 6899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
||++.+.
T Consensus 79 vih~A~~ 85 (349)
T TIGR02622 79 VFHLAAQ 85 (349)
T ss_pred EEECCcc
Confidence 9999873
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.48 Score=44.09 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-ce-Eec-----CCCCCccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TD-FVN-----TSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~~-vi~-----~~~~~~~~~~~~~~~~~~~~d 267 (380)
..++|||+|+|. |.++..+++..+..+|++++.+++-.+++++.-. .. .++ ....| -.+.+++ ..+.+|
T Consensus 103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D--a~~~L~~-~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND--ARAELEK-RDEKFD 178 (336)
T ss_pred CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh--hHHHHhh-CCCCcc
Confidence 346899998763 5556677787777799999999999999987421 10 110 00011 3333432 344799
Q ss_pred EEE-Eccc-----------ChhhHH-HHHHHhhcCCcEEEEE
Q 016933 268 RSV-ECTG-----------NIDNMI-SAFECVHDGWGVAVLV 296 (380)
Q Consensus 268 ~v~-d~~g-----------~~~~~~-~~~~~l~~~~G~~v~~ 296 (380)
+|| |... +.+.+. .+.+.|+++ |.++.-
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred EEEecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 975 4321 113455 788899997 988754
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.4 Score=43.60 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=63.8
Q ss_pred hcchhhhhhhhhhhhccCC-CCCCeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHHHhcCCceEecCCCCC
Q 016933 175 ILSCGVSTGLGATLNVAKP-ERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVD-RSSKRFEEAKKFGVTDFVNTSEHD 251 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~~~lG~~~vi~~~~~~ 251 (380)
.+||+....+.. ++...+ -.|++|+|+| .+.+|.-.+.++...|+ .|++.. ++..
T Consensus 137 ~~PcTp~ai~~l-l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~~-------------------- 194 (296)
T PRK14188 137 LVPCTPLGCMML-LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTRD-------------------- 194 (296)
T ss_pred CcCCCHHHHHHH-HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCCC--------------------
Confidence 355543333333 343343 5789999999 59999999999988899 888873 3321
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.+ ...|+|+-++|.+..+...+ ++++ ..++.+|...
T Consensus 195 --l~e~~-----~~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin~ 233 (296)
T PRK14188 195 --LPAVC-----RRADILVAAVGRPEMVKGDW--IKPG-ATVIDVGINR 233 (296)
T ss_pred --HHHHH-----hcCCEEEEecCChhhcchhe--ecCC-CEEEEcCCcc
Confidence 11111 14799999999977766554 7886 8888888753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.37 Score=42.90 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHH----HHHhcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFE----EAKKFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~----~~~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
++++||+|+ |.+|...++.+...|+ +|+.+. ++.++.+ .++..|... . .|..+.. ..+.+.+.+.. +
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL-G 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence 468999997 9999999999888999 776664 4444432 233345422 2 2333321 11222332222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++.+.|.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.42 Score=43.49 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=64.4
Q ss_pred hcchhhhhhhhhhhhccCC-CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 175 ILSCGVSTGLGATLNVAKP-ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
.+||+....+. |++..++ -.|++|.|+|. +.+|.-.+.++...|+ +|++..+... +
T Consensus 138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~-------------------~- 195 (301)
T PRK14194 138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST-------------------D- 195 (301)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC-------------------C-
Confidence 45654333333 3444444 46899999997 5999999999999999 8888854322 0
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+.++ ..|+|+-++|.+..+...+ ++++ ..++.+|..
T Consensus 196 -l~e~~~-----~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin 233 (301)
T PRK14194 196 -AKALCR-----QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN 233 (301)
T ss_pred -HHHHHh-----cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence 222121 4799999999987766554 7886 788888764
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.39 Score=44.14 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=29.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.++++||+|+ +++|.+.++.....|+ +|+.++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 4689999997 8999999988888999 88888776
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.45 Score=43.28 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=29.1
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
-+++++||+|+ +++|.+.+......|+ +|+.++++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 35789999987 9999998888878899 777776553
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.53 Score=41.83 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ +.+|...+......|+ +++.++++.++.+.+ ++.+.+. + .|..+.+ ...+.++... -+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ-ELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH-HHHHHHHHHHHHcC
Confidence 4689999997 9999998888888899 788888877665433 2234322 2 2333221 1223233221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++.+.|.
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.55 Score=42.37 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--eE-----ecCCCCCccHHHHHHHHhCCCc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--DF-----VNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--~v-----i~~~~~~~~~~~~~~~~~~~~~ 266 (380)
+..++||++|+|. |.++..+++.....++++++.+++-.+.+++.-.. .. ++....| ..+.+++. .+.+
T Consensus 71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D--~~~~l~~~-~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD--GFKFLADT-ENTF 146 (270)
T ss_pred CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc--hHHHHHhC-CCCc
Confidence 3456999998765 44556666766566899999998877777763110 00 0001112 33333332 3479
Q ss_pred cEEEEccc----------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVECTG----------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d~~g----------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+--.. ..+.+..+.+.|+++ |.++...
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~ 186 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS 186 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence 99864222 124567888999997 9988763
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.58 Score=40.01 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=53.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-------------------hH----HHHHHhcCCceEecCCCCCc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-------------------KR----FEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-------------------~~----~~~~~~lG~~~vi~~~~~~~ 252 (380)
..+|+|+|+|++|.-.+..+-..|.+++..++.+. .| .+.++++..+..+......
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~- 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD- 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC-
Confidence 46799999999999999999999998888886542 11 2234455554333222211
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhc
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD 288 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 288 (380)
+.+...+.. .++|+|++|..........-+....
T Consensus 100 -~~~~~~~~~-~~~dvVi~~~~~~~~~~~ln~~c~~ 133 (197)
T cd01492 100 -ISEKPEEFF-SQFDVVVATELSRAELVKINELCRK 133 (197)
T ss_pred -ccccHHHHH-hCCCEEEECCCCHHHHHHHHHHHHH
Confidence 111111221 2689999998775543444444444
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.58 Score=42.68 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=36.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~ 43 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGA 43 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence 37788999999987777777898 89999999999988888776
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.74 Score=41.11 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=65.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eEecCCCCCccHHHHHHHHhCCCc
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.....++++++||=+|+| .|..+..+++.....+|++++.++...+.+++.-.. .++.. + ..+ . ...+.+
T Consensus 24 l~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~-d----~~~-~--~~~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCG-PGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA-D----IAS-W--QPPQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEccc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC-c----hhc-c--CCCCCc
Confidence 344566788899988875 366677888776434999999999988888764321 12211 1 110 0 112378
Q ss_pred cEEEEccc------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVECTG------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+.... ....+..+.+.|+++ |.+++..
T Consensus 95 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM 130 (258)
T ss_pred cEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence 99876533 124678899999997 9988753
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.18 Score=45.75 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
..+++++|+|+|++|.+++..+...|+.+|++++++.++.+.+.+ ++....+.. ..+ .. .. -..+|+|+++
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~--~~----~~-~~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLE--LQ----EE-LADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-ccc--ch----hc-cccCCEEEEC
Confidence 456789999999999999999999996699999999888765543 332110111 000 10 10 1368999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
+..
T Consensus 193 Tp~ 195 (278)
T PRK00258 193 TSA 195 (278)
T ss_pred CcC
Confidence 875
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.81 Score=35.87 Aligned_cols=92 Identities=24% Similarity=0.339 Sum_probs=51.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEcCChh---HHHHHHhcCCc--eEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 198 SVAVFGL-GAVGLAAAEGARI-AGASRIIGVDRSSK---RFEEAKKFGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~-~g~~~vi~~~~~~~---~~~~~~~lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
+|+|+|+ |-+|.+.++.+.. -+.+-+-+++++.+ ..+.-.-.|.. .+..+ +.+.+.... +|+++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~--------~~l~~~~~~-~DVvI 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT--------DDLEELLEE-ADVVI 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB--------S-HHHHTTH--SEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc--------hhHHHhccc-CCEEE
Confidence 5889998 9999999999988 57734555555541 11111111111 11111 123333332 89999
Q ss_pred EcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 271 ECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
|++ .++.....++.+... |.-+.+|.+.
T Consensus 73 DfT-~p~~~~~~~~~~~~~-g~~~ViGTTG 100 (124)
T PF01113_consen 73 DFT-NPDAVYDNLEYALKH-GVPLVIGTTG 100 (124)
T ss_dssp EES--HHHHHHHHHHHHHH-T-EEEEE-SS
T ss_pred EcC-ChHHhHHHHHHHHhC-CCCEEEECCC
Confidence 999 446666666666664 7777787764
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.2 Score=39.40 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=48.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGV-DRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
-+|-|+|+|.+|.......+..|. .|..+ .++.++.+.+.. ++...+.+..+ . -...|++|-++.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~-----------~-~~~aDlv~iavp 77 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE-----------I-LRDADLVFIAVP 77 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG-----------G-GCC-SEEEE-S-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc-----------c-cccCCEEEEEec
Confidence 478999999999998888899998 77776 455555555544 44433333222 1 125899999998
Q ss_pred ChhhHHHHHHHhhc
Q 016933 275 NIDNMISAFECVHD 288 (380)
Q Consensus 275 ~~~~~~~~~~~l~~ 288 (380)
. +.+....+.|..
T Consensus 78 D-daI~~va~~La~ 90 (127)
T PF10727_consen 78 D-DAIAEVAEQLAQ 90 (127)
T ss_dssp C-CHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHH
Confidence 8 677777777765
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.7 Score=39.63 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|...++.+...|.++++.++.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3679999999999999998888999889998876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.3 Score=43.50 Aligned_cols=75 Identities=27% Similarity=0.294 Sum_probs=46.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCC--ccHHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHD--RPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~--~~~~~~~~~~~~~~~d~v~ 270 (380)
+++++||+|+ |.+|...+......|+ +|+.+++++++.. .-.... ..|..+.+ ..+.+.+.+.. +++|+++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi 82 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTTAEGCAAVARAVLERL-GGVDILV 82 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCCHHHHHHHHHHHHHHc-CCCCEEE
Confidence 4689999997 9999998888888899 8988888765321 111111 12332221 11222222222 3689999
Q ss_pred Eccc
Q 016933 271 ECTG 274 (380)
Q Consensus 271 d~~g 274 (380)
++.|
T Consensus 83 ~~ag 86 (260)
T PRK06523 83 HVLG 86 (260)
T ss_pred ECCc
Confidence 9987
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.3 Score=39.21 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHH-HHH---hcCCce-E--ecCCCCC--ccHHHHHHHH--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFE-EAK---KFGVTD-F--VNTSEHD--RPIQEVIAEM-- 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~-~~~---~lG~~~-v--i~~~~~~--~~~~~~~~~~-- 261 (380)
.++++||+|+ |.+|.+.+......|+ +|+... ++.++.+ ... +.+... . .|..+.+ ..+.+.+.+.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 4688999997 9999999998888999 776653 4444332 222 223221 1 2222211 1122233221
Q ss_pred --hC-CCccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 262 --TN-GGVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 262 --~~-~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+ +++|+++++.|.. ..+..++..+.+. |+++.++...
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~ 147 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAA 147 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCcc
Confidence 12 2799999998731 0122355566675 8999887653
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=93.82 E-value=2 Score=31.66 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=52.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHcC---CcEEE-EEcCChhHHHHH-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 198 SVAVFGLGAVGLAAAEGARIAG---ASRII-GVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g---~~~vi-~~~~~~~~~~~~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+|.|+|+|.+|.+.+.-....| . +|+ +.++++++.+.+ ++++...... + ..+.++ ..|+||-|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~~--~----~~~~~~-----~advvila 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATAD--D----NEEAAQ-----EADVVILA 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEESE--E----HHHHHH-----HTSEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhccccccC--C----hHHhhc-----cCCEEEEE
Confidence 4778899999999888888888 6 777 448999887766 4566432220 1 333333 37999999
Q ss_pred ccChhhHHHHHHH---hhcCCcEEEE
Q 016933 273 TGNIDNMISAFEC---VHDGWGVAVL 295 (380)
Q Consensus 273 ~g~~~~~~~~~~~---l~~~~G~~v~ 295 (380)
+-. ..+...++. ..++ ..++.
T Consensus 69 v~p-~~~~~v~~~i~~~~~~-~~vis 92 (96)
T PF03807_consen 69 VKP-QQLPEVLSEIPHLLKG-KLVIS 92 (96)
T ss_dssp S-G-GGHHHHHHHHHHHHTT-SEEEE
T ss_pred ECH-HHHHHHHHHHhhccCC-CEEEE
Confidence 976 444444433 3443 44443
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.28 Score=41.90 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=58.8
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
......++.+||-+|+| .|..++.+|+ .|. +|++++.++.-.+.+++. |... .....+ +.. . .. .+
T Consensus 24 ~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v--~~~~~d--~~~-~-~~-~~ 93 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPL--RTDAYD--INA-A-AL-NE 93 (195)
T ss_pred HHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCc--eeEecc--chh-c-cc-cC
Confidence 33344456788888875 3666777776 477 999999999877766542 3221 111111 100 0 11 23
Q ss_pred CccEEEEccc-----C---hhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSVECTG-----N---IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+|+|+...- . ...+..+.+.|+++ |.++++.
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~ 133 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA 133 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence 6999876421 1 24677888899997 9865553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.49 Score=41.53 Aligned_cols=79 Identities=29% Similarity=0.360 Sum_probs=46.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-HHH----HHHhcCCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-RFE----EAKKFGVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-~~~----~~~~lG~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|+ |.+|...+..+...|+ +|+++.++.. +.+ .++..+... ++ |..+.+ .+.+.+.+...
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAE-SVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 3578999997 9999999988888899 6766655443 222 222233322 22 332221 12233333222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++.+.|.
T Consensus 82 ~~id~vi~~ag~ 93 (248)
T PRK05557 82 GGVDILVNNAGI 93 (248)
T ss_pred CCCCEEEECCCc
Confidence 368999999874
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.5 Score=40.63 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~ 236 (380)
++|.|+|+|.+|...++.+...|. .|+..+.+++..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 579999999999988888888899 999999988765543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.52 Score=42.14 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=49.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ +.+|...+......|+ +|+.+++++++.+.+ ++.|... . .|..+.. ...+.+.+... +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDED-GVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHhCC
Confidence 4678999987 9999987777777899 788888887765433 2334322 2 2332221 12222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.54 Score=42.43 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred cchhhhhhhhhhhhccCC-CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 176 LSCGVSTGLGATLNVAKP-ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 176 l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
.||+....+.. ++..++ -.|++++|+|- ..+|.-.+++++..|+ +|++..+..+ +
T Consensus 139 ~PcTp~av~~l-l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T~-------------------~-- 195 (285)
T PRK10792 139 RPCTPRGIMTL-LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFTK-------------------N-- 195 (285)
T ss_pred CCCCHHHHHHH-HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCCC-------------------C--
Confidence 45544444443 344443 35899999997 5699999999999999 8877743211 1
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+.++ .+|+++.++|.+..+.. +.++++ ..++.+|..
T Consensus 196 l~~~~~-----~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin 233 (285)
T PRK10792 196 LRHHVR-----NADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN 233 (285)
T ss_pred HHHHHh-----hCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence 222222 47999999999776554 778886 888888864
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.4 Score=43.18 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
+++++||+|+ |.+|...+..+...|+ +|++++++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~ 41 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE 41 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence 4578999997 9999998888888899 8888887653
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.52 Score=47.91 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=65.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+.|+|.|.|.+|+..++..+..|. ++++++.++++.+.+++.|...++ -+..+. +.+++..-..+|.++-++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDat~~---~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFY-GDATRM---DLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEE-EeCCCH---HHHHhcCCCcCCEEEEEeCC
Confidence 3679999999999999999999999 899999999999999998875433 233222 22333323378999999987
Q ss_pred hhhHH---HHHHHhhcCCcEEE
Q 016933 276 IDNMI---SAFECVHDGWGVAV 294 (380)
Q Consensus 276 ~~~~~---~~~~~l~~~~G~~v 294 (380)
++.-. ...+.+.|+ -+++
T Consensus 475 ~~~n~~i~~~ar~~~p~-~~ii 495 (621)
T PRK03562 475 PQTSLQLVELVKEHFPH-LQII 495 (621)
T ss_pred HHHHHHHHHHHHHhCCC-CeEE
Confidence 54332 334444554 4443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.97 Score=40.33 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=66.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCc
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.......++++||=+|+|. |..+..+++.. +. +|++++.++.-.+.+++.+.+.+. .+ ..+ + ...+.+
T Consensus 22 l~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~----~d--~~~-~--~~~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART----GD--VRD-W--KPKPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE----cC--hhh-C--CCCCCc
Confidence 4445567888998888764 66777888775 55 899999999999888886654322 11 111 1 112379
Q ss_pred cEEEEccc-----C-hhhHHHHHHHhhcCCcEEEEE
Q 016933 267 DRSVECTG-----N-IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 267 d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~ 296 (380)
|+|+-... . ...+..+.+.|+|+ |.+++.
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~ 125 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ 125 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence 99987542 1 24577888999997 998765
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.52 Score=39.73 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=56.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
+++||=+|+| .|..++.+++.....+|++++.+++..+.+++ .|.+.+ .....+ ..+ + ...+.+|+|+-
T Consensus 43 ~~~vLDiGcG-tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~~d--~~~-~--~~~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSG-AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVNGR--AED-F--QHEEQFDVITS 115 (181)
T ss_pred CCeEEEecCC-CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEecc--hhh-c--cccCCccEEEe
Confidence 7888888864 25556666665533489999999987666543 454332 111111 211 1 11247999875
Q ss_pred cc-c-ChhhHHHHHHHhhcCCcEEEEE
Q 016933 272 CT-G-NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~~-g-~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.. . -+..+..+.+.|+++ |+++..
T Consensus 116 ~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 141 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVG-GYFLAY 141 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence 43 1 124566778889997 998865
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.57 Score=39.17 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=28.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+|+|+|+|++|...++.+-..|.++++.++.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999988888889998888887664
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.44 Score=44.26 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHH-HcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGAR-IAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~-~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
-.+++|+|+|+ |.+|..++..+. ..|..+++.+.++.++.+.+.+ ++... .. .+.+... ..|+|+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~----------i~-~l~~~l~-~aDiVv 220 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK----------IL-SLEEALP-EADIVV 220 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc----------HH-hHHHHHc-cCCEEE
Confidence 35689999998 899988777775 4576689999998887766543 32111 11 1222222 589999
Q ss_pred EcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 271 ECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+++.+..+..-...+++. -.++.++.+.
T Consensus 221 ~~ts~~~~~~I~~~~l~~~-~~viDiAvPR 249 (340)
T PRK14982 221 WVASMPKGVEIDPETLKKP-CLMIDGGYPK 249 (340)
T ss_pred ECCcCCcCCcCCHHHhCCC-eEEEEecCCC
Confidence 9998755431222345664 6666777654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.49 Score=42.44 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=47.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
++||+|+ |.+|...+......|+ +|+.++++.++.+.+ +..+.+. ++ |..+. ..+.+.+.... .+++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDY-SQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCH-HHHHHHHHHHHHHcCCCC
Confidence 6899997 9999998888777899 888888887765432 2233322 22 22221 11222222221 13799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|.+.|.
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99999884
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.53 Score=45.07 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=47.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCc-eE--ecCCCCCccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVT-DF--VNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~-~v--i~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
++++++|+|+ |++|.+.+......|+ +|+++++++++.+... +.+.. .. .|..+. +.+.+.. +++|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~-----~~v~~~l-~~IDiL 249 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQE-----AALAELL-EKVDIL 249 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCH-----HHHHHHh-CCCCEE
Confidence 4689999997 9999999888888899 8888888776653321 11111 12 232221 2233332 369999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+.+.|.
T Consensus 250 InnAGi 255 (406)
T PRK07424 250 IINHGI 255 (406)
T ss_pred EECCCc
Confidence 988764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.89 Score=41.44 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred CeEEEEcCCHHHHH-HHHHHHHcCCcEEEE-EcCChh--HHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGLGAVGLA-AAEGARIAGASRIIG-VDRSSK--RFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~g~~G~~-ai~la~~~g~~~vi~-~~~~~~--~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-++.|+|.|.+|.. +..+.+.-+. ++.+ ++.+++ .++..+++|..... .+ +...+....-..+|+||++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~--~~----ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA--EG----IDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc--CC----HHHHHhCcCCCCCCEEEEC
Confidence 46899999999986 4444444466 4444 445443 34667778864322 11 3222321000369999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
++...+...+.+++.. |+.++...
T Consensus 78 T~a~~H~e~a~~a~ea--Gk~VID~s 101 (302)
T PRK08300 78 TSAGAHVRHAAKLREA--GIRAIDLT 101 (302)
T ss_pred CCHHHHHHHHHHHHHc--CCeEEECC
Confidence 9986666666666665 45444433
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.58 Score=42.45 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=37.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+..++..|. +|+++++++++.+.+++.|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~ 44 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL 44 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence 58899999999887777777788 89999999999888888775
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.93 Score=42.70 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=64.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEc--CChhH-HHHHHhcCCceEecCCCCC-ccHH--------------
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIA--GASRIIGVD--RSSKR-FEEAKKFGVTDFVNTSEHD-RPIQ-------------- 255 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~--~~~~~-~~~~~~lG~~~vi~~~~~~-~~~~-------------- 255 (380)
++|.|+|+ |.+|..++...+.. .. +|+++. ++.++ .++++++++..+...++.. ..+.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 47899996 99999999988765 45 677664 33333 4556678888766544321 1111
Q ss_pred HHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEE
Q 016933 256 EVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 256 ~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~ 295 (380)
+.+.++... .+|+|+.++++...+...+.+++.+ .++.+
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 122233333 6999999998867788889999885 55554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.61 Score=44.09 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|..++..+...|+++++.++.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4689999999999999999999999899888765
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.43 Score=48.50 Aligned_cols=77 Identities=27% Similarity=0.294 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh---------------------hHHHHHHhcCCceEecCCCC-
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS---------------------KRFEEAKKFGVTDFVNTSEH- 250 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~---------------------~~~~~~~~lG~~~vi~~~~~- 250 (380)
.++++.|+|+|+|..|+.++..++..|. +|+++++.+ ...++++++|++..++..-.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 358 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK 358 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence 4678899999999999999999999999 788775532 23566778888665543321
Q ss_pred CccHHHHHHHHhCCCccEEEEcccC
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+... +.+. ..+|.+|-++|.
T Consensus 359 ~~~~-~~~~----~~yD~vilAtGa 378 (604)
T PRK13984 359 DIPL-EELR----EKHDAVFLSTGF 378 (604)
T ss_pred cCCH-HHHH----hcCCEEEEEcCc
Confidence 1111 2221 269999999985
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.5 Score=37.04 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=62.3
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
....+.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++ .+...+- ....+ ... ...+
T Consensus 25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~-~~~~d--~~~----~~~~ 96 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID-IIPGE--API----ELPG 96 (187)
T ss_pred HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeE-EEecC--chh----hcCc
Confidence 344567888888888753 6667777776533389999999988777754 3432221 11111 101 1123
Q ss_pred CccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSVECTGN---IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+|+|+..... ...+..+.+.|+++ |++++..
T Consensus 97 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLTF 131 (187)
T ss_pred CCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEEE
Confidence 69999864321 23567888999997 9987643
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.54 Score=41.49 Aligned_cols=80 Identities=28% Similarity=0.284 Sum_probs=47.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EcCChhHHHH----HHhcCCce-EecCCCCC-ccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIG-VDRSSKRFEE----AKKFGVTD-FVNTSEHD-RPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~-~~~~~~~~~~----~~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |.+|...+......|+ +|+. ..++.++.+. +++.+... .+..+-.+ ....+.+.+.. -+
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3578999997 9999998888888899 6654 4566655432 23344432 22222222 11222232222 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|.+.|.
T Consensus 82 ~id~vi~~ag~ 92 (250)
T PRK08063 82 RLDVFVNNAAS 92 (250)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.44 Score=41.73 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=50.3
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
|+|+|+ |.+|...+..+...+. +|.++.|+.. +.+.+++.|+..+ ..+-.+ .+.+.+... ++|.||.+++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~~~---~~~l~~al~-g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADYDD---PESLVAALK-GVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-TT----HHHHHHHHT-TCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-ecccCC---HHHHHHHHc-CCceEEeecCc
Confidence 789998 9999999999988888 8888878753 4566778898654 332222 233444433 69999999883
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.39 Score=47.77 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.++++||+|+|++|.+++..+...|+ +|++++++.++.+.+. .++.. ++...+ ..+......|++++++
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l~~~-~~~~~~--------~~~~~~~~~diiINtT 447 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELADAVGGQ-ALTLAD--------LENFHPEEGMILANTT 447 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCc-eeeHhH--------hhhhccccCeEEEecc
Confidence 46789999999999999999999999 8999999887766554 34432 222111 1111122478888887
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
+.
T Consensus 448 ~v 449 (529)
T PLN02520 448 SV 449 (529)
T ss_pred cC
Confidence 53
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.67 Score=39.00 Aligned_cols=40 Identities=38% Similarity=0.438 Sum_probs=31.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+|.|+|+|.+|...++++...|+ +|+.++.+++.++..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~ 40 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARK 40 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhh
Confidence 58899999999988888888899 99999999987665543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.54 Score=41.56 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHH-HhcCCce-Ee--cCCCCCccHHHHHH---HHhCCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFEEA-KKFGVTD-FV--NTSEHDRPIQEVIA---EMTNGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~-~~lG~~~-vi--~~~~~~~~~~~~~~---~~~~~~~ 266 (380)
++++||+|+ |.+|...+......|+ +|+.+. +++++.+.+ .+++... ++ |..+.+ .+.+.+. +..++++
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~~i 82 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADELGDRAIALQADVTDRE-QVQAMFATATEHFGKPI 82 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHH-HHHHHHHHHHHHhCCCC
Confidence 578999997 9999998888888899 666553 444444333 3344221 22 332221 1333332 2333249
Q ss_pred cEEEEccc
Q 016933 267 DRSVECTG 274 (380)
Q Consensus 267 d~v~d~~g 274 (380)
|++|.+.|
T Consensus 83 d~li~~ag 90 (253)
T PRK08642 83 TTVVNNAL 90 (253)
T ss_pred eEEEECCC
Confidence 99999876
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.67 Score=41.85 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=47.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh-CCCcc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT-NGGVD 267 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~-~~~~d 267 (380)
+++++|+|+|.+|...+.... .|+ +|+.+++++++.+.+ ++.|.+. + .|..+.+ .+.+.+.... -+++|
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~-~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRE-SVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHH-HHHHHHHHHHhcCCCC
Confidence 357888999999998887774 788 899888887665433 2234322 2 2333322 2333333221 24799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 99999884
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.63 Score=40.92 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=46.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC-hhHHHHHH----hcCC--ceE--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS-SKRFEEAK----KFGV--TDF--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~-~~~~~~~~----~lG~--~~v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|...+......|+ +|+.++++ +++.+.+. +.+. ... .|..+.+ .+.+.++...
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPD-ALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHH-HHHHHHHHHHHH
Confidence 4578999997 9999988888877899 88888775 33333222 2211 111 2332221 1222232221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|++|.+.|.
T Consensus 83 ~~~~d~vi~~ag~ 95 (249)
T PRK09135 83 FGRLDALVNNASS 95 (249)
T ss_pred cCCCCEEEECCCC
Confidence 1368999999883
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.93 Score=40.98 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|.++|-|.+|.-.++=+...|. .+.+.++++++ .+++++.|+...-+ ..+.++ ..|+||-++...
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~s-------~~eaa~-----~aDvVitmv~~~ 68 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAAS-------PAEAAA-----EADVVITMLPDD 68 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccCC-------HHHHHH-----hCCEEEEecCCH
Confidence 57788999999988888888899 99999999999 89998888854321 111111 367777777665
Q ss_pred hhHHHHH-------HHhhcCCcEEEEEcCC
Q 016933 277 DNMISAF-------ECVHDGWGVAVLVGVP 299 (380)
Q Consensus 277 ~~~~~~~-------~~l~~~~G~~v~~g~~ 299 (380)
+.+...+ +.++++ ..++.+...
T Consensus 69 ~~V~~V~~g~~g~~~~~~~G-~i~IDmSTi 97 (286)
T COG2084 69 AAVRAVLFGENGLLEGLKPG-AIVIDMSTI 97 (286)
T ss_pred HHHHHHHhCccchhhcCCCC-CEEEECCCC
Confidence 5444333 223343 555555443
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=1 Score=41.87 Aligned_cols=90 Identities=20% Similarity=0.105 Sum_probs=61.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-----------EecCCCCCccHHHHHHHHhCCC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-----------FVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-----------vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
.+|.|+|+|.+|.+.+..+...|. .|.++++++++.+.+++.+... +....+ ..+.+ ..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~----~~e~~-----~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD----PEEAL-----AG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCC----HHHHH-----cC
Confidence 469999999999998888888898 8999999988877776643110 100111 22211 25
Q ss_pred ccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.|+|+-++... .+...++.++++ -.++.+..
T Consensus 75 aD~Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~ 105 (328)
T PRK14618 75 ADFAVVAVPSK-ALRETLAGLPRA-LGYVSCAK 105 (328)
T ss_pred CCEEEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence 89999999884 567777888885 55555543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.55 Score=42.95 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=36.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~ 46 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA 46 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence 68899999999877777777888 89999999998888777765
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.9 Score=42.27 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|.|+|.|.+|...+..++.+|. +|++.+++.+..... .. +.. + +.+.+ ...|+|+-++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~----~~----~~~-~--l~ell-----~~aDiVil~lP 207 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF----LT----YKD-S--VKEAI-----KDADIISLHVP 207 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh----hh----ccC-C--HHHHH-----hcCCEEEEeCC
Confidence 57789999999999999999999999 999998876543211 00 100 1 22222 14688877776
Q ss_pred Chh-----hHHHHHHHhhcCCcEEEEEcC
Q 016933 275 NID-----NMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~-----~~~~~~~~l~~~~G~~v~~g~ 298 (380)
... .....+..++++ ..++.++-
T Consensus 208 ~t~~t~~li~~~~l~~mk~g-avlIN~aR 235 (330)
T PRK12480 208 ANKESYHLFDKAMFDHVKKG-AILVNAAR 235 (330)
T ss_pred CcHHHHHHHhHHHHhcCCCC-cEEEEcCC
Confidence 432 123455667775 66666643
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.81 Score=41.30 Aligned_cols=95 Identities=20% Similarity=0.163 Sum_probs=62.9
Q ss_pred hcchhhhhhhhhhhhccCC-CCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 175 ILSCGVSTGLGATLNVAKP-ERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
.+||+....+. |++..++ -.|++|+|+|.| .+|.-.+.++...|+ +|++..+..+.
T Consensus 136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t~~-------------------- 193 (285)
T PRK14191 136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILTKD-------------------- 193 (285)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCcHH--------------------
Confidence 34554444443 3444444 369999999985 999999999999999 77766322111
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.++ .+|+++-++|.+..+. -+.++++ ..++.+|...
T Consensus 194 -l~~~~~-----~ADIvV~AvG~p~~i~--~~~vk~G-avVIDvGi~~ 232 (285)
T PRK14191 194 -LSFYTQ-----NADIVCVGVGKPDLIK--ASMVKKG-AVVVDIGINR 232 (285)
T ss_pred -HHHHHH-----hCCEEEEecCCCCcCC--HHHcCCC-cEEEEeeccc
Confidence 111121 4799999999977654 3456886 8888888643
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.6 Score=41.65 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=46.3
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCCh---hHHHHH-Hhc-CCce-E--ecCCCCCccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSS---KRFEEA-KKF-GVTD-F--VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~---~~~~~~-~~l-G~~~-v--i~~~~~~~~~~~~~~~~~~ 263 (380)
.++++||+|+ +++|.+.+......|+ +|+.+.++. ++.+.+ +++ +... . .|..+.+ ...+.+++...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDE-EITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHH-HHHHHHHHHHH
Confidence 4689999986 5999998888878899 788776543 333333 333 2211 1 2333322 22233333222
Q ss_pred --CCccEEEEccc
Q 016933 264 --GGVDRSVECTG 274 (380)
Q Consensus 264 --~~~d~v~d~~g 274 (380)
+.+|+++++.|
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 47999999876
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.8 Score=41.53 Aligned_cols=58 Identities=26% Similarity=0.151 Sum_probs=43.7
Q ss_pred hhccCCCCCCeEEEE-cCCHHHHHHHHHHHHcCCcEEEEE--cCChhHHHHHHhcCCceEe
Q 016933 188 LNVAKPERGSSVAVF-GLGAVGLAAAEGARIAGASRIIGV--DRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~-G~g~~G~~ai~la~~~g~~~vi~~--~~~~~~~~~~~~lG~~~vi 245 (380)
.+...+++|.+.+|. .+|..|.+.+..|+.+|++-++++ ..+++|.+.++.+|++.++
T Consensus 166 ~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~ 226 (429)
T PLN03013 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226 (429)
T ss_pred HHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 345667888665565 469999999999999999544444 2467899999999997654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.95 Score=40.75 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~~ 265 (380)
+.+++||+|+ |.+|...+..+...|+ +|+++.++.++.+.+ +..+... ++..+-.+ ..+.+.+.+.. -++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3468999997 9999998888878899 888887776654332 2234322 22222222 11223333221 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 88 id~vi~~Ag~ 97 (274)
T PRK07775 88 IEVLVSGAGD 97 (274)
T ss_pred CCEEEECCCc
Confidence 8999999875
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.95 Score=40.38 Aligned_cols=96 Identities=25% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.++.+||=+|+| .|..+..+++. |. +|++++.+++..+.+++. |...-+.....+ ..+ +.....+.+|+|
T Consensus 43 ~~~~~vLDiGcG-~G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d--~~~-l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGG-EGQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA--AQD-IAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC--HHH-HhhhcCCCCCEE
Confidence 456788878875 36778888875 77 899999999988887763 321101111111 211 222233479999
Q ss_pred EEccc-----C-hhhHHHHHHHhhcCCcEEEEE
Q 016933 270 VECTG-----N-IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 270 ~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+.... . ...+..+.+.|+|+ |.++++
T Consensus 117 ~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 148 (255)
T PRK11036 117 LFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM 148 (255)
T ss_pred EehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 85421 2 24578899999997 998765
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.57 Score=44.10 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
..+|||+|+|++|..+++.+-..|.++++.++.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47899999999999999999999999998887643
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.42 Score=43.81 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=56.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc---cHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR---PIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~---~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|+|+|+|.+|.+.+..+...|. .|+.++++.++.+.+++.|... + +.... ......... +.+|+||-++-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~-~~~~~~~~~~~~~~~~~--~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--E-DGEITVPVLAADDPAEL--GPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--c-CCceeecccCCCChhHc--CCCCEEEEecc
Confidence 58999999999988887777888 8999988888888777766521 1 00000 000011111 46899999987
Q ss_pred ChhhHHHHHHHhh----cCCcEEEEEc
Q 016933 275 NIDNMISAFECVH----DGWGVAVLVG 297 (380)
Q Consensus 275 ~~~~~~~~~~~l~----~~~G~~v~~g 297 (380)
.. .+..+++.+. ++ ..++.+.
T Consensus 76 ~~-~~~~~~~~l~~~l~~~-~~iv~~~ 100 (304)
T PRK06522 76 AY-QLPAALPSLAPLLGPD-TPVLFLQ 100 (304)
T ss_pred cc-cHHHHHHHHhhhcCCC-CEEEEec
Confidence 63 3344444444 33 4555443
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.72 Score=40.58 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCCh-hHHHHH---HhcCCceE---ecCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSS-KRFEEA---KKFGVTDF---VNTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~-~~~~~~---~~lG~~~v---i~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ |.+|...+..+...|+ +|+.+ .++. .+.+++ ++.+.... .|..+.+ .+.+.+.+.. -
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 79 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWD-STKAAFDKVKAEV 79 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHH-HHHHHHHHHHHHh
Confidence 3578999987 9999999988888899 66664 3333 232333 33454332 2222211 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 80 ~~id~li~~ag~ 91 (246)
T PRK12938 80 GEIDVLVNNAGI 91 (246)
T ss_pred CCCCEEEECCCC
Confidence 379999999885
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.63 Score=47.14 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+.|+|.|.|.+|+..++..+..|. ++++++.++++.+.+++.|...++ -+..+ .+.+++..-..+|.++-+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~-GDat~---~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYY-GDATQ---LELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEE-eeCCC---HHHHHhcCCccCCEEEEEeCCH
Confidence 578999999999999999999999 899999999999999999875443 22222 2234443333789999999885
Q ss_pred hhHH---HHHHHhhcCCcEEEE
Q 016933 277 DNMI---SAFECVHDGWGVAVL 295 (380)
Q Consensus 277 ~~~~---~~~~~l~~~~G~~v~ 295 (380)
+.-. ...+...|+ .+++.
T Consensus 476 ~~n~~i~~~~r~~~p~-~~Iia 496 (601)
T PRK03659 476 EDTMKIVELCQQHFPH-LHILA 496 (601)
T ss_pred HHHHHHHHHHHHHCCC-CeEEE
Confidence 4332 334445564 55543
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.53 Score=43.48 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=30.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
.|++|||+|+ |.+|...+..+...|+ +|+++.++.++.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~ 42 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDR 42 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcch
Confidence 4689999997 9999998888888899 788776766543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.33 Score=43.44 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=47.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~--~~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+. ..... ..|..+.. .+.+.+.... -+.+|+++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSSAE-EVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 4678999987 9999999888888899 88888777654321 11111 12333221 2333333322 13789999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 83 ~~Ag~ 87 (266)
T PRK06171 83 NNAGI 87 (266)
T ss_pred ECCcc
Confidence 98874
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.71 Score=41.83 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=44.1
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCceE---ecCCCCCccHHHHHHHHhCC-CccE
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTDF---VNTSEHDRPIQEVIAEMTNG-GVDR 268 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~v---i~~~~~~~~~~~~~~~~~~~-~~d~ 268 (380)
|||+|+ |.+|...+......+..+++.+++++.++..++. + ....+ +.+--.|-.-.+.+...... ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 799987 9999988877777787799999999988766644 4 11111 00111110123455555555 8999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
||.++.-
T Consensus 81 VfHaAA~ 87 (293)
T PF02719_consen 81 VFHAAAL 87 (293)
T ss_dssp EEE----
T ss_pred EEEChhc
Confidence 9998753
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.62 Score=41.23 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=47.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHhC--CCc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMTN--GGV 266 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~~~ 266 (380)
+++||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+ ++.+... .+ |..+.+ .+.+.+..... +.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKD-QVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHcCCC
Confidence 36899997 9999998888888899 888888877654332 2334322 22 322221 12233333221 368
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 79 d~vi~~ag~ 87 (254)
T TIGR02415 79 DVMVNNAGV 87 (254)
T ss_pred CEEEECCCc
Confidence 999999874
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.67 Score=41.45 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=46.6
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCC---hhHHHHH-HhcCCceE--ecCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRS---SKRFEEA-KKFGVTDF--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~---~~~~~~~-~~lG~~~v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
+++++||+|+ +++|.+.+......|+ +|+.+.+. +++.+.+ ++++.... .|..+.+ ...+.+.....
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDE-QIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHH-HHHHHHHHHHHHh
Confidence 4689999984 5899998887777899 77776443 3333332 33453222 2333322 13333333221
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 83 g~iD~lvnnAG~ 94 (260)
T PRK06997 83 DGLDGLVHSIGF 94 (260)
T ss_pred CCCcEEEEcccc
Confidence 479999998864
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.59 Score=40.70 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=47.2
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
|||+|+ |-+|...+..+...|. .|+++.++......... .....+ .|..+. ..+.+.+... .+|.||++++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~-~~~~~~~~~~---~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIVLSRSSNSESFEEKKLNVEFVIGDLTDK-EQLEKLLEKA---NIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEEEESCSTGGHHHHHHTTEEEEESETTSH-HHHHHHHHHH---TESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-ccccccccccccccccccceEEEEEeecccc-cccccccccc---CceEEEEeecc
Confidence 789997 9999999999999999 78877777765554433 233222 233321 1122323222 68999999886
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.5 Score=44.21 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
+++++||=+|+|. |..+..+++..|+ +|++++.++...+.+++. |...-+.....+ ..+ + .+..+.||+|
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D--~~~-~-~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVAD--ALN-Q-PFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC--ccc-C-CCCCCCccEE
Confidence 6788898888753 6677788887788 999999999877766552 331101111111 000 0 0122478999
Q ss_pred EEcccC------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 270 VECTGN------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 270 ~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+..... ...+..+.+.|+++ |++++...
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW 224 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 864321 24677899999997 99988654
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.73 Score=42.32 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
.+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.++++|+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv 79 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGV 79 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCC
Confidence 45689999999999988888888887 8888988764 355666776
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.97 Score=40.59 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=67.4
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eEecCCCCCccHHHHHHHHhCCC
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
+....++.++.+||=+|+|. |..+..+++..++ +|++++.+++..+.+++.... .-+.....+ +.+ .....+.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D--~~~--~~~~~~~ 117 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEAND--ILK--KDFPENT 117 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEECC--ccc--CCCCCCC
Confidence 34556788999999888753 5556777777788 999999999888888764221 111111111 100 0011236
Q ss_pred ccEEEEc--c---c---ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 266 VDRSVEC--T---G---NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 266 ~d~v~d~--~---g---~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
||+|+.. . + ....+..+.+.|+|+ |++++....
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~~ 158 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDYC 158 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEec
Confidence 8998852 1 1 124677889999997 999887653
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.55 Score=41.93 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCC------hhHHHHHHhcCCc-eE--ecCCCCC--ccHHHHHHH
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRS------SKRFEEAKKFGVT-DF--VNTSEHD--RPIQEVIAE 260 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~------~~~~~~~~~lG~~-~v--i~~~~~~--~~~~~~~~~ 260 (380)
.+++++|+|+ +++|.+.+......|+ +|+.+.++ ++..+.+++.+.. .. .|..+.+ ..+.+.+.+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 4688999996 4899998888888899 77666433 2223333332221 12 2333322 112233333
Q ss_pred HhCCCccEEEEcccCh-------h----------------------hHHHHHHHhhcCCcEEEEEcCC
Q 016933 261 MTNGGVDRSVECTGNI-------D----------------------NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.. +.+|+++++.|.. . ....++..+.++ |+++.++..
T Consensus 84 ~~-g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~ 149 (258)
T PRK07370 84 KW-GKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYL 149 (258)
T ss_pred Hc-CCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecc
Confidence 22 3799999998731 0 123456667775 888887654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.5 Score=42.29 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=49.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHH---------h-CCCc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEM---------T-NGGV 266 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~---------~-~~~~ 266 (380)
.+|.|+|.|.+|...+..+...|. +|+++++++++.+.++. |... ..+.. +.+.+++. + ....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~-g~~~---~~e~~--l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINR-GEIH---IVEPD--LDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHC-CCCC---cCCCC--HHHHHHHHhhcCceeeecccccC
Confidence 468999999999988887777898 99999999999987653 3211 11222 33332211 0 1157
Q ss_pred cEEEEcccCh
Q 016933 267 DRSVECTGNI 276 (380)
Q Consensus 267 d~v~d~~g~~ 276 (380)
|++|-|++.+
T Consensus 77 Dvvii~vptp 86 (415)
T PRK11064 77 DAFLIAVPTP 86 (415)
T ss_pred CEEEEEcCCC
Confidence 9999998875
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.84 Score=41.94 Aligned_cols=78 Identities=26% Similarity=0.318 Sum_probs=46.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHH----HHHHhcCCceE-e--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRF----EEAKKFGVTDF-V--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~----~~~~~lG~~~v-i--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ +.+|...+......|+ +|+..+++. ++. +.+++.|.... + |..+.+ ..+.+.+.+ -
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~--~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG--L 87 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH--h
Confidence 4688999997 9999998887777899 788776542 222 22333454322 2 222211 112222222 2
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|++|++.|.
T Consensus 88 g~iD~li~nAG~ 99 (306)
T PRK07792 88 GGLDIVVNNAGI 99 (306)
T ss_pred CCCCEEEECCCC
Confidence 479999999874
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.84 Score=40.06 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=47.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
++++||+|+ |.+|...+......|+ +|+.+ +++.++.+.+.+ .+... ++ |..+.+ .+.+.+..... +
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEE-DVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH-HHHHHHHHHHHHhC
Confidence 468999997 9999988877777799 77777 787766543322 23221 22 222221 12222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 69999998874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.6 Score=42.82 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|++|.|+|-|.+|...+++++.+|+ +|++.+++.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 58999999999999999999999999 999998763
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.83 Score=39.75 Aligned_cols=101 Identities=19% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceEec-------CCCCC-ccHHHHHHHH-
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVN-------TSEHD-RPIQEVIAEM- 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~vi~-------~~~~~-~~~~~~~~~~- 261 (380)
.+.++.+||+.|+| .|.-++.||. .|+ .|++++.++...+.+ ++.|...... +...+ .-+...+.++
T Consensus 34 ~~~~~~rvL~~gCG-~G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 34 ALPAGSRVLVPLCG-KSLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCCeEEEeCCC-ChHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34567899999876 3777778875 699 999999999988765 3333221000 00000 0000001111
Q ss_pred --hCCCccEEEEccc--------ChhhHHHHHHHhhcCCcEEEEE
Q 016933 262 --TNGGVDRSVECTG--------NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 262 --~~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
..+.+|.|+|... ....+..+.++|+|+ |++.++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~ 154 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLV 154 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEE
Confidence 1136899999653 124578899999997 875543
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=42.89 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE--ec-CCCCCccHHHHHHHHhCC-CccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF--VN-TSEHDRPIQEVIAEMTNG-GVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v--i~-~~~~~~~~~~~~~~~~~~-~~d~v 269 (380)
...+|||+|+ ...|+..+..++..|. +|+++++.+....... ..++.. +. +...+..+.+.+.++... ++|++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s-~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFS-RAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHH-HhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 3578999998 5689988888888999 8999988765433211 122332 21 222233466777665555 89999
Q ss_pred EEcccChhhHHHHHHHhhcC
Q 016933 270 VECTGNIDNMISAFECVHDG 289 (380)
Q Consensus 270 ~d~~g~~~~~~~~~~~l~~~ 289 (380)
+-+......+....+.+.+.
T Consensus 81 IP~~e~~~~~a~~~~~l~~~ 100 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELSAY 100 (389)
T ss_pred EECChHHHhHHhhhhhhcCC
Confidence 98875422233334445553
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.4 Score=40.69 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHH-HcCCcEEEEEcCChhHHHHHHh-c---CCceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGAR-IAGASRIIGVDRSSKRFEEAKK-F---GVTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~-~~g~~~vi~~~~~~~~~~~~~~-l---G~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
....+++|+|+|..|.+.+.... ..+..+|.+.++++++.+.+.+ + |.. +....+ ..+.+ .+.|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~~~----~~~av-----~~aDI 192 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVVTD----LEAAV-----RQADI 192 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEeCC----HHHHH-----hcCCE
Confidence 45678999999999999876444 4676699999999887655433 3 321 211111 22222 25899
Q ss_pred EEEcccChhh-HHHHHHHhhcCCcEEEEEcCC
Q 016933 269 SVECTGNIDN-MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 269 v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~ 299 (380)
|+.++++... +. .+.++++ -.+..+|..
T Consensus 193 Vi~aT~s~~pvl~--~~~l~~g-~~i~~ig~~ 221 (314)
T PRK06141 193 ISCATLSTEPLVR--GEWLKPG-THLDLVGNF 221 (314)
T ss_pred EEEeeCCCCCEec--HHHcCCC-CEEEeeCCC
Confidence 9998887432 22 2567885 666667654
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.2 Score=40.87 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|-|.+|.+.++.++.+|. +|++..+.....+.++..|+. +. + +.+.++ ..|+|+-++
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v~---s----l~Eaak-----~ADVV~llL 79 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-VM---S----VSEAVR-----TAQVVQMLL 79 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-EC---C----HHHHHh-----cCCEEEEeC
Confidence 367999999999999999999999999 887776665566666667763 21 1 333222 478988887
Q ss_pred cChhh---H-HHHHHHhhcC
Q 016933 274 GNIDN---M-ISAFECVHDG 289 (380)
Q Consensus 274 g~~~~---~-~~~~~~l~~~ 289 (380)
..+.. + ...+..++++
T Consensus 80 Pd~~t~~V~~~eil~~MK~G 99 (335)
T PRK13403 80 PDEQQAHVYKAEVEENLREG 99 (335)
T ss_pred CChHHHHHHHHHHHhcCCCC
Confidence 65332 2 2456666774
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.86 E-value=2 Score=36.83 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh-CCCccEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT-NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~-~~~~d~v 269 (380)
++.+||=+|+|. |..+..+++.....+|++++.+++..+.+++ .+...+ .....+ ..+.+.... .+.+|.|
T Consensus 40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~~d--~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLCGD--AVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEecC--HHHHHHHHcCccccceE
Confidence 567888888764 7777778877643489999999998887765 233222 111122 322232222 3368888
Q ss_pred EEccc--------------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 270 VECTG--------------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 270 ~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+-... ....+..+.+.|+++ |.+++.-
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence 75332 134688889999997 9988763
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.45 Score=43.42 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.+++++|+|+|++|.+++..+...|+++|++++++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 568899999999999988888889997799998885
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.74 Score=41.63 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..+|+|+|+|++|..+++.+-.+|++++..+|.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4789999999999999999999999888888654
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.83 Score=39.97 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=45.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHH-HHHhc---CCce-E--ecCCCCCccHHHHHHHHh--CCC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFE-EAKKF---GVTD-F--VNTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~-~~~~l---G~~~-v--i~~~~~~~~~~~~~~~~~--~~~ 265 (380)
+++||+|+ |.+|...+..+...|+ +|+++.+ ++++.+ +..++ +... + .|..+. ..+.+.+.++. .+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSF-ESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCH-HHHHHHHHHHHHHcCC
Confidence 46899987 9999998888888899 7777766 444332 22222 2211 2 233221 11223332222 236
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 79 id~vi~~ag~ 88 (242)
T TIGR01829 79 IDVLVNNAGI 88 (242)
T ss_pred CcEEEECCCC
Confidence 8999999874
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.22 Score=44.18 Aligned_cols=97 Identities=20% Similarity=0.155 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--------eE-ecCCCCCccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--------DF-VNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--------~v-i~~~~~~~~~~~~~~~~~~~~ 265 (380)
..++|||+|+|. |..+-.+++.....+|.+++.+++-.+.++++-.. ++ +.. .| -.+.+++.....
T Consensus 76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~--~D--g~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII--GD--GRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE--ST--HHHHHHTSSST-
T ss_pred CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE--hh--hHHHHHhccCCc
Confidence 568999998654 45566777777666999999999988988874221 11 111 12 444455543327
Q ss_pred ccEEE-Eccc---------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 266 VDRSV-ECTG---------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 266 ~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+|+|+ |... +.+.+..+.++|+++ |.++.-.
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA 191 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence 99975 6554 236788999999997 9888654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.22 Score=44.16 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=45.6
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
|+|.|+ |.+|...+...+..|. .|+.+.|++.+.+........ ..+.+......++|+|++.+|.+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-~v~iltR~~~~~~~~~~~~v~-----------~~~~~~~~~~~~~DavINLAG~~ 67 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-QVTILTRRPPKASQNLHPNVT-----------LWEGLADALTLGIDAVINLAGEP 67 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-eEEEEEcCCcchhhhcCcccc-----------ccchhhhcccCCCCEEEECCCCc
Confidence 588987 9999999999999998 888888988877654332211 11112222222699999988863
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.78 Score=47.22 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCce--E--ecCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTD--F--VNTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~--v--i~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|.+.+......|+ +|+.++++.++.+.+.+ .+... . .|..+. ..+.+.+.+..
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~-~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDE-QAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCH-HHHHHHHHHHHHh
Confidence 4689999997 9999998888888899 89999888876554432 23211 1 232221 12333333322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 491 ~g~iDilV~nAG~ 503 (676)
T TIGR02632 491 YGGVDIVVNNAGI 503 (676)
T ss_pred cCCCcEEEECCCC
Confidence 2379999999884
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.95 Score=44.11 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|+|+|+|.+|...++.+...|. .|+++++++++.+.+++ .|...+..... -...+.+..-.++|.++-+++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~~~~gd~~----~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVRTVVGNGS----SPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEEEEEeCCC----CHHHHHHcCCCcCCEEEEecCCh
Q ss_pred hhHHHHHHHhhc
Q 016933 277 DNMISAFECVHD 288 (380)
Q Consensus 277 ~~~~~~~~~l~~ 288 (380)
..-..+...++.
T Consensus 77 ~~n~~~~~~~r~ 88 (453)
T PRK09496 77 ETNMVACQIAKS 88 (453)
T ss_pred HHHHHHHHHHHH
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.89 Score=41.67 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=36.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~ 44 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT 44 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence 58889999999877777777788 89999999999888887664
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.9 Score=40.34 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE-cCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGV-DRS 229 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~-~~~ 229 (380)
-.|.+|+|.|.|.+|..+++.+..+|+ +|+++ +.+
T Consensus 235 l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 235 LEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 468899999999999999999999999 78755 444
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.3 Score=38.52 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=77.4
Q ss_pred eEEEEcCCHHH-HHHHHHHHHcC--CcEEEEEcCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEc
Q 016933 198 SVAVFGLGAVG-LAAAEGARIAG--ASRIIGVDRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVEC 272 (380)
Q Consensus 198 ~vlI~G~g~~G-~~ai~la~~~g--~~~vi~~~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~ 272 (380)
+|.|+|+|.++ ...+...+..+ +..+.+.++++++. +..+++|...++ .+ +. ++... .+|+|+-+
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~--~~----~~----~ll~~~~iD~V~Ia 74 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAY--TD----LE----ELLADPDIDAVYIA 74 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCccc--CC----HH----HHhcCCCCCEEEEc
Confidence 57899987444 44555555554 43455557788775 455668875222 22 22 22333 59999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEEEeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
+....+.+.+.++|.. |+-|++..+-....-+... .... +++.+.-.+ ..+....++.+-+++.+|.+.
T Consensus 75 tp~~~H~e~~~~AL~a--GkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~--~~Rf~p~~~~~k~li~~g~lG 146 (342)
T COG0673 75 TPNALHAELALAALEA--GKHVLCEKPLALTLEEAEELVELARKAGVKLMVGF--NRRFDPAVQALKELIDSGALG 146 (342)
T ss_pred CCChhhHHHHHHHHhc--CCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh--hhhcCHHHHHHHHHHhcCCcC
Confidence 9988889999999988 6777776543211111110 0111 222222111 233334577788888888553
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.55 Score=43.18 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=53.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh-
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI- 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~- 276 (380)
+|+|+|+|++|.+....+...|. .|..+.+++. .+.+++-|....-..................+.+|++|-++=..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~-~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGH-DVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-eEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 68999999999887777777884 7877767665 77777767532211110000000011111123789998877542
Q ss_pred --hhHHHHHHHhhcCCcEEEEE
Q 016933 277 --DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 277 --~~~~~~~~~l~~~~G~~v~~ 296 (380)
+.+......+.+. -.++++
T Consensus 80 ~~~al~~l~~~~~~~-t~vl~l 100 (307)
T COG1893 80 LEEALPSLAPLLGPN-TVVLFL 100 (307)
T ss_pred HHHHHHHhhhcCCCC-cEEEEE
Confidence 2333444444443 344433
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.43 Score=43.42 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+++++||+|+|+.+.+++..+...|+.++++++|++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 567899999998898877766778988999999984
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.68 Score=45.12 Aligned_cols=70 Identities=31% Similarity=0.435 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-hHH----HHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-KRF----EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-~~~----~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.+++++|+|+|.+|+.++..+...|+ .|++++.+. +.. +.+.+.|...+. .+..+ +. .+++|+|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--------~~-~~~~d~v 72 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVL-GEYPE--------EF-LEGVDLV 72 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCcch--------hH-hhcCCEE
Confidence 46889999998899999999999999 899998764 222 334455654222 12111 11 1368999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+.+.|.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 998885
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.78 Score=40.61 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=45.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-HH-H---HHHhcCCc-eE--ecCCCCCccHHHHHHHHhC--CC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-RF-E---EAKKFGVT-DF--VNTSEHDRPIQEVIAEMTN--GG 265 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-~~-~---~~~~lG~~-~v--i~~~~~~~~~~~~~~~~~~--~~ 265 (380)
+++||+|+ |.+|...+......|+ +|+.++++.. +. + .++..+.. .+ .|..+.+ .+.+.+..+.. +.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLS-AHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHH-HHHHHHHHHHHhcCC
Confidence 57899997 9999998888888899 7888876532 21 2 22223332 12 2333221 23333333322 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|.+.|.
T Consensus 81 id~vi~~ag~ 90 (256)
T PRK12745 81 IDCLVNNAGV 90 (256)
T ss_pred CCEEEECCcc
Confidence 8999999874
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.67 Score=38.98 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=32.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-------hHHHHHHhcCCc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-------KRFEEAKKFGVT 242 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-------~~~~~~~~lG~~ 242 (380)
++||+|+ |++|+..++.....|..+++.+.++. +..+.+++.|+.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~ 54 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR 54 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc
Confidence 6899986 99999988888878777999998882 233444555653
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.62 Score=47.72 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh---------------------HHHHHHhcCCceEecCCCC-C
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK---------------------RFEEAKKFGVTDFVNTSEH-D 251 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~---------------------~~~~~~~lG~~~vi~~~~~-~ 251 (380)
+.+++|+|+|+|..|+.++..+...|. +|++++..+. ..+.++++|.+..++..-. +
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d 269 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence 457899999999999999999999999 7888876532 2455667887655443211 1
Q ss_pred ccHHHHHHHHhCCCccEEEEcccCh
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
-.+ +.+. ..+|.||-++|..
T Consensus 270 v~~-~~~~----~~~DaVilAtGa~ 289 (652)
T PRK12814 270 ITL-EELQ----KEFDAVLLAVGAQ 289 (652)
T ss_pred cCH-HHHH----hhcCEEEEEcCCC
Confidence 011 1121 1489999988863
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.7 Score=40.95 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh----------------------hHHHHHH----hcCCceEecCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS----------------------KRFEEAK----KFGVTDFVNTS 248 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~----------------------~~~~~~~----~lG~~~vi~~~ 248 (380)
.+.+|+|+|+|++|...+..+-..|.++++.++.+. .|.+.++ +++.+ +....
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~-I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG-IVPHP 253 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe-EEEEe
Confidence 357899999999999999988889998998886431 2222222 23321 11111
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..- -.+.+..+ .++|+||+|+...+.-..+.+.+....--++.+|..
T Consensus 254 ~~I--~~~n~~~L--~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 254 EYI--DEDNVDEL--DGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred ecC--CHHHHHHh--cCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 100 01122222 379999999998655444444444431345666653
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.7 Score=34.87 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=57.3
Q ss_pred hhccCC-CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCC
Q 016933 188 LNVAKP-ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 188 ~~~~~~-~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
.+..++ -.|++|+|+|- ..+|.-.+.++...|+ +|+...+.... +.+.++ .
T Consensus 19 l~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t~~---------------------l~~~v~-----~ 71 (140)
T cd05212 19 LNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKTIQ---------------------LQSKVH-----D 71 (140)
T ss_pred HHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCCcC---------------------HHHHHh-----h
Confidence 333343 46899999996 8999999999988898 88887543211 222222 4
Q ss_pred ccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 266 VDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 266 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.|+|+-++|.+..+. -+.++++ -.++.+|...
T Consensus 72 ADIVvsAtg~~~~i~--~~~ikpG-a~Vidvg~~~ 103 (140)
T cd05212 72 ADVVVVGSPKPEKVP--TEWIKPG-ATVINCSPTK 103 (140)
T ss_pred CCEEEEecCCCCccC--HHHcCCC-CEEEEcCCCc
Confidence 799999999875544 4558886 7777776543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.68 Score=46.51 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.+.++||+|+ |++|...+..+...|+ +|+.++++.++.+.+. +.|... + .|..+.+ ...+.+.+.. .+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDAD-AMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHhcC
Confidence 4578999997 9999998888888899 7999989887665432 334322 2 2333322 1223333322 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++++++|.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 69999999875
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.68 Score=40.89 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=46.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-Ee--cCCCCCccHHHHHHHHhC--CCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FV--NTSEHDRPIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~~~d~ 268 (380)
+++++||+|+ |.+|...+......|+ +|+.++++. +...+... .+ |..+. ..+.+.+.+... +.+|+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~id~ 79 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSDA-AAVAQVCQRLLAETGPLDV 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCCH-HHHHHHHHHHHHHcCCCCE
Confidence 4688999997 8999998888888899 888887765 22222211 22 22221 123333333221 36899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++.+.|.
T Consensus 80 vi~~ag~ 86 (252)
T PRK08220 80 LVNAAGI 86 (252)
T ss_pred EEECCCc
Confidence 9999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 380 | ||||
| 4dl9_A | 396 | Crystal Structure Of S-nitrosoglutathione Reductase | 1e-102 | ||
| 3uko_A | 378 | Crystal Structure Of S-Nitrosoglutathione Reductase | 1e-101 | ||
| 3qj5_A | 374 | S-Nitrosoglutathione Reductase (Gsnor) In Complex W | 4e-82 | ||
| 1teh_A | 373 | Structure Of Human Liver Chichi Alcohol Dehydrogena | 5e-82 | ||
| 2fzw_A | 373 | Structure Of The Binary Complex Of The E67l Mutant | 6e-82 | ||
| 1mc5_A | 374 | Ternary Complex Of Human Glutathione-Dependent Form | 6e-82 | ||
| 1cdo_A | 374 | Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co | 4e-80 | ||
| 1axg_A | 374 | Crystal Structure Of The Val203->ala Mutant Of Live | 2e-77 | ||
| 1qv6_A | 374 | Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG | 2e-77 | ||
| 6adh_A | 374 | Structure Of Triclinic Ternary Complex Of Horse Liv | 2e-77 | ||
| 3oq6_A | 374 | Horse Liver Alcohol Dehydrogenase A317c Mutant Comp | 4e-77 | ||
| 1n8k_A | 374 | Horse Liver Alcohol Dehydrogenase Val292thr Mutant | 6e-77 | ||
| 1a71_A | 374 | Ternary Complex Of An Active Site Double Mutant Of | 9e-77 | ||
| 1ju9_A | 374 | Horse Liver Alcohol Dehydrogenase Val292ser Mutant | 1e-76 | ||
| 1axe_A | 374 | Crystal Structure Of The Active-Site Mutant Phe93-> | 1e-76 | ||
| 1hdx_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 1e-76 | ||
| 1mgo_A | 374 | Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L | 2e-76 | ||
| 1hdy_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 6e-76 | ||
| 1qlh_A | 374 | Horse Liver Alcohol Dehydrogenase Complexed To Nad | 9e-76 | ||
| 1hdz_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 9e-76 | ||
| 1htb_A | 374 | Crystallization Of Human Beta3 Alcohol Dehydrogenas | 1e-75 | ||
| 1ee2_B | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 8e-75 | ||
| 1ee2_A | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 2e-74 | ||
| 1ht0_A | 374 | Human Gamma-2 Alcohol Dehydrogense Length = 374 | 7e-74 | ||
| 3cos_A | 381 | Crystal Structure Of Human Class Ii Alcohol Dehydro | 6e-72 | ||
| 1hso_A | 374 | Human Alpha Alcohol Dehydrogenase (Adh1a) Length = | 2e-71 | ||
| 1d1t_A | 373 | Mutant Of Human Sigma Alcohol Dehydrogenase With Le | 2e-66 | ||
| 1agn_A | 373 | X-Ray Structure Of Human Sigma Alcohol Dehydrogenas | 4e-66 | ||
| 1e3l_A | 376 | P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase | 1e-65 | ||
| 1e3e_A | 376 | Mouse Class Ii Alcohol Dehydrogenase Complex With N | 2e-65 | ||
| 1p0c_A | 373 | Crystal Structure Of The Nadp(H)-Dependent Vertebra | 8e-64 | ||
| 1f8f_A | 371 | Crystal Structure Of Benzyl Alcohol Dehydrogenase F | 1e-22 | ||
| 1rjw_A | 339 | Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd | 9e-12 | ||
| 3pii_A | 339 | Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog | 1e-11 | ||
| 2h6e_A | 344 | Crystal Structure Of The D-Arabinose Dehydrogenase | 2e-11 | ||
| 3meq_A | 365 | Crystal Structure Of Alcohol Dehydrogenase From Bru | 5e-10 | ||
| 1llu_A | 342 | The Ternary Complex Of Pseudomonas Aeruginosa Alcoh | 3e-08 | ||
| 3qe3_A | 355 | Sheep Liver Sorbitol Dehydrogenase Length = 355 | 1e-07 | ||
| 4ilk_A | 359 | Crystal Structure Of Short Chain Alcohol Dehydrogen | 2e-07 | ||
| 2eer_A | 347 | Structural Study Of Project Id St2577 From Sulfolob | 2e-07 | ||
| 1vj0_A | 380 | Crystal Structure Of Alcohol Dehydrogenase (Tm0436) | 2e-07 | ||
| 1pl7_A | 356 | Human Sorbitol Dehydrogenase (Apo) Length = 356 | 4e-06 | ||
| 3s1l_A | 340 | Crystal Structure Of Apo-Form Furx Length = 340 | 6e-06 | ||
| 1r37_A | 347 | Alcohol Dehydrogenase From Sulfolobus Solfataricus | 9e-06 | ||
| 1nto_A | 347 | N249y Mutant Of Alcohol Dehydrogenase From The Arch | 4e-05 | ||
| 1pl6_A | 356 | Human SdhNADHINHIBITOR COMPLEX Length = 356 | 5e-05 | ||
| 3i4c_A | 347 | Crystal Structure Of Sulfolobus Solfataricus Adh(Ss | 5e-05 | ||
| 2dfv_A | 347 | Hyperthermophilic Threonine Dehydrogenase From Pyro | 6e-05 | ||
| 2d8a_A | 348 | Crystal Structure Of Ph0655 From Pyrococcus Horikos | 6e-05 | ||
| 2dq4_A | 343 | Crystal Structure Of Threonine 3-Dehydrogenase Leng | 6e-05 | ||
| 1ykf_A | 352 | Nadp-Dependent Alcohol Dehydrogenase From Thermoana | 7e-05 | ||
| 1uuf_A | 369 | Crystal Structure Of A Zinc-Type Alcohol Dehydrogen | 7e-05 | ||
| 2nvb_A | 352 | Contribution Of Pro275 To The Thermostability Of Th | 8e-05 | ||
| 2hcy_A | 347 | Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi | 9e-05 | ||
| 3fpl_A | 351 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 4e-04 |
| >pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396 | Back alignment and structure |
|
| >pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378 | Back alignment and structure |
|
| >pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374 | Back alignment and structure |
|
| >pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373 | Back alignment and structure |
|
| >pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373 | Back alignment and structure |
|
| >pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374 | Back alignment and structure |
|
| >pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374 | Back alignment and structure |
|
| >pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374 | Back alignment and structure |
|
| >pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374 | Back alignment and structure |
|
| >pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374 | Back alignment and structure |
|
| >pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374 | Back alignment and structure |
|
| >pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381 | Back alignment and structure |
|
| >pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374 | Back alignment and structure |
|
| >pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373 | Back alignment and structure |
|
| >pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373 | Back alignment and structure |
|
| >pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373 | Back alignment and structure |
|
| >pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371 | Back alignment and structure |
|
| >pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339 | Back alignment and structure |
|
| >pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339 | Back alignment and structure |
|
| >pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344 | Back alignment and structure |
|
| >pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365 | Back alignment and structure |
|
| >pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342 | Back alignment and structure |
|
| >pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355 | Back alignment and structure |
|
| >pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359 | Back alignment and structure |
|
| >pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347 | Back alignment and structure |
|
| >pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380 | Back alignment and structure |
|
| >pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356 | Back alignment and structure |
|
| >pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340 | Back alignment and structure |
|
| >pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347 | Back alignment and structure |
|
| >pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347 | Back alignment and structure |
|
| >pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356 | Back alignment and structure |
|
| >pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347 | Back alignment and structure |
|
| >pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347 | Back alignment and structure |
|
| >pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348 | Back alignment and structure |
|
| >pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352 | Back alignment and structure |
|
| >pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369 | Back alignment and structure |
|
| >pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352 | Back alignment and structure |
|
| >pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347 | Back alignment and structure |
|
| >pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 | Back alignment and structure |
|---|
Score = 636 bits (1643), Expect = 0.0
Identities = 192/374 (51%), Positives = 261/374 (69%), Gaps = 1/374 (0%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPP+A EVRIKI T++C TD Y F
Sbjct: 1 ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 65 PRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH AG+VESVGEGV+ L+ GD V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 61 PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PLAPLDKVC+L CG+STG
Sbjct: 121 LMP-DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 185 GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244
GA +N AK E GS AVFGLG VGLA G ++AGASRIIGVD + +F AK+FG T+
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV 304
+N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H GWGV+V+VGV +
Sbjct: 240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEE 299
Query: 305 FMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364
T+P ++ RT KGT FG +K +P +V YM+K++++++F+TH + F EINKAFE
Sbjct: 300 IATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFE 359
Query: 365 YMVKGEGLRCIISM 378
M G+ +R ++ +
Sbjct: 360 LMHSGKSIRTVVKI 373
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374 | Back alignment and structure |
|---|
Score = 630 bits (1626), Expect = 0.0
Identities = 181/374 (48%), Positives = 251/374 (67%), Gaps = 2/374 (0%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
STAG ++ CKAAV WE KP I++VEVAPP+A EVRIK+ T +CR+D + TP
Sbjct: 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
P I GHEAAG+VES+GEGV+ + GD V+P+FT +CG CR C+ N C ++
Sbjct: 61 -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
RG M DG SRF+ G+P++HFLGTSTFS+YTVV VAKI+ +PL+KVC++ CG ST
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
G G+ + VAK +GS+ AVFGLG VGL+ G + AGA+RIIGVD + +F +AK+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+ VN ++ +PIQEV+ EM+NGGVD S E G +D M++A C + +GV+V+VGVP
Sbjct: 239 ECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
P+ +L+ RT KG FG +K + +P +V +M K+ L+ ITH +PF +IN+
Sbjct: 299 QNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 363 FEYMVKGEGLRCII 376
F+ + GE +R I+
Sbjct: 359 FDLLRSGESIRTIL 372
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 | Back alignment and structure |
|---|
Score = 626 bits (1618), Expect = 0.0
Identities = 159/376 (42%), Positives = 242/376 (64%), Gaps = 6/376 (1%)
Query: 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
T G ++ CKAA+AW+ G PL I+++EV+PP+A EVRI++ T +C TD+ + K + L
Sbjct: 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKAL 60
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLR---IN 120
FP + GHE AG+VESVG GV++ + GD V+P F +C C+ C S ++N+C LR
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
+ ++ D SRF+ G + HF+G S+FS+YTVV +A+++ A L++VC++ CG
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGF 180
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
S+G GA +N AK GS+ AVFGLG VGL+A G +IAGASRII +D + ++F +AK G
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 240
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
TD +N E D+P+Q+VI E+T GGVD S++C G + +A +C GWG +VG
Sbjct: 241 ATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV 300
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
+ ++V+ R++ GTFFG +K +P++V Y NK+ +L+ +TH +PF IN
Sbjct: 301 DE--MTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESIN 358
Query: 361 KAFEYMVKGEGLRCII 376
A + M +G+ +R I+
Sbjct: 359 DAIDLMKEGKSIRTIL 374
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374 | Back alignment and structure |
|---|
Score = 623 bits (1608), Expect = 0.0
Identities = 188/376 (50%), Positives = 254/376 (67%), Gaps = 2/376 (0%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
+T G ++ CKAAVAWEA KPL+I+++EV P A E+RIKI T +C TDLY
Sbjct: 1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
FP + GHE AG+VESVG GV++ + G+ V+P+F +CG+CR C+S +N C N
Sbjct: 61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
VM ++RF+ G V FLGTSTFS+YTVV+ VAKI+P APLD VC+L CGVST
Sbjct: 121 PDVMS-PKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
G GA +N AK E GS+ AVFGLGAVGLAA G AGA RII VD + +FE+AK FG T
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
DFVN ++H PI +V+++MTNGGVD S+EC GN+ M +A E GWGV+VLVG
Sbjct: 240 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH 299
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
V T+PI ++ RT KG+ FG +K + +P +V Y++K+++L++FITHR+P +N A
Sbjct: 300 DV-ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358
Query: 363 FEYMVKGEGLRCIISM 378
+ M G+ +R ++S+
Sbjct: 359 IDLMKHGKCIRTVLSL 374
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 | Back alignment and structure |
|---|
Score = 623 bits (1608), Expect = 0.0
Identities = 169/374 (45%), Positives = 243/374 (64%), Gaps = 4/374 (1%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
TAG +TCKAAVAWE KPL ++ + VAPP+A EVRIKI + +C +D + +
Sbjct: 2 CTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK 61
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
FP I GHEA GVVES+G GV+ ++ GD V+P+F +CG CR C+S SN C+ +
Sbjct: 62 -FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
G+M D SRF+ G+P+ + +GTSTF+EYTVV VAKI+P APL+ C++ CG +T
Sbjct: 121 TGLMA-DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFAT 178
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
G GA +N AK GS+ AVFGLG VG +A G + AGASRIIGV +F +A + G T
Sbjct: 179 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 238
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+ +N ++D+PI EVI E TNGGVD +VEC G I+ M++A + + G GV V++G+ S +
Sbjct: 239 ECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN 298
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
P+ +L R+LKG+ FG +K ++ +VD YM K++ + ++ ++ +INKA
Sbjct: 299 ERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKA 357
Query: 363 FEYMVKGEGLRCII 376
FE + G+G+R I+
Sbjct: 358 FELLSSGQGVRSIM 371
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 | Back alignment and structure |
|---|
Score = 521 bits (1344), Expect = 0.0
Identities = 111/372 (29%), Positives = 178/372 (47%), Gaps = 10/372 (2%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
AAV G +Q +++ PQ EV +K+ T +C TDL + K P P + G
Sbjct: 6 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 64
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HE +G++E++G V++L+VGDHV+ + CG C C + C G +
Sbjct: 65 HEGSGIIEAIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADS-E 122
Query: 130 GQSRFSINGEPV--NHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
G + + V +HF S+F+ Y + K+ P++ + L CG+ TG GA
Sbjct: 123 GNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGAC 182
Query: 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
+N K SS +G GAVGL+A A++ GAS II VD R E AK+ G T +N+
Sbjct: 183 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS 242
Query: 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
D I E+T+GGV+ ++E TG+ + + + + G +VG P
Sbjct: 243 KTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQF 299
Query: 308 KPINVL-NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
++L +T+ G G+ P+ +P +V +Y + ++ + F EIN+A
Sbjct: 300 DVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDS 358
Query: 367 VKGEGLRCIISM 378
KG L+ II +
Sbjct: 359 RKGITLKPIIKI 370
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380 | Back alignment and structure |
|---|
Score = 453 bits (1167), Expect = e-160
Identities = 94/381 (24%), Positives = 154/381 (40%), Gaps = 29/381 (7%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
A V + +PL+ ++ E++ + ++I +C +D++ + + P I G
Sbjct: 17 KAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILG 76
Query: 70 HEAAGVVESVGEGVSD-----LEVGDHVLPVFTGECGDCRHCRS-DVSNMCDLLRINPVR 123
HE AG V V D L+ GD ++ CG+C C+ +C +
Sbjct: 77 HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP-----NRK 131
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG-CVAKINPLAPLDKVCILSCGVST 182
+ G S + H G +S + V+ V K++ LD + + C +T
Sbjct: 132 VYGINRGCSEYP-------HLRGC--YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
A + G +V + G G +GL AR GA +I + S R + A++ G
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242
Query: 243 DFVNTSEHDR-PIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
+N E ++ I ++T+G G D +E TG+ ++ E + G G + GV
Sbjct: 243 LTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAV 301
Query: 301 KDAVFMTKPINVLNERTLKG-TFFGNY-KPRTDLPSVVDMYMNKQLELEKFITHRIPFSE 358
P V LK TF G + + V + L K ITHR+P E
Sbjct: 302 PQDPV---PFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKE 358
Query: 359 INKAFEYMVKGEGLRCIISME 379
NKA E M E L+ I+ E
Sbjct: 359 ANKALELMESREALKVILYPE 379
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 1e-86
Identities = 79/365 (21%), Positives = 133/365 (36%), Gaps = 36/365 (9%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE--SKGQTPLFPRIFG 69
KA E G ++ D+ P E+ +K+ LC +D++ + + P G
Sbjct: 2 KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HE G V +GEGV+ VGD V CG C C N C R L
Sbjct: 62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT-------RAADLGI 114
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP-LAPLDKVCILSCGVSTGLGATL 188
G + +EY +V S L P+ + G++ +
Sbjct: 115 TPPGLGSPG----------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
+ GS+ V G+G +G + R A+R+I VD R A++ G V +
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224
Query: 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
+ I E+T G G + G + +A + V G +VG+ +
Sbjct: 225 AG---AADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGA---HA 277
Query: 308 KPIN--VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEY 365
K + ++ ++G R++L VV + +L++ T E A+
Sbjct: 278 KVGFFMIPFGASVVTPYWGT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRR 331
Query: 366 MVKGE 370
+ +G
Sbjct: 332 LREGS 336
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 2e-76
Identities = 94/378 (24%), Positives = 154/378 (40%), Gaps = 53/378 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPL-FPRIF 68
+A + L + D V P E+ ++++ S+C TDL + W++ + + P +
Sbjct: 2 RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVRG 124
GHE +GVVE+VG GV +VGDHV + E C C CR+ ++C +
Sbjct: 62 GHEFSGVVEAVGPGVRRPQVGDHV----SLESHIVCHACPACRTGNYHVCLNTQ------ 111
Query: 125 VMLADGQSRFSINGEPVNHFLGTS---TFSEYTVVHSGCVAKINPLAPLDKVCI---LSC 178
LG F+EY VV + P + I
Sbjct: 112 -------------------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGN 152
Query: 179 GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238
V T+ G SV + G G +GL AA R +GA I+ D + R A+
Sbjct: 153 AV-----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP 207
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298
+ VN E D + EV+ +T GV+ +E +GN + + G G A ++G+
Sbjct: 208 YA-DRLVNPLEED--LLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGI 263
Query: 299 PSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSE 358
PS F V+ T G + + + +++L +THR+P S
Sbjct: 264 PSDPIRFDLAGELVMRGITAFGIA--GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSR 321
Query: 359 INKAFEYMVKGEGLRCII 376
+AF + G+ ++ I+
Sbjct: 322 YREAFGLLASGQAVKVIL 339
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 2e-76
Identities = 100/383 (26%), Positives = 158/383 (41%), Gaps = 55/383 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPL-FPRIF 68
A + + G + +V+V P EV IK+ TS+C TDL Y W Q+ + P+I
Sbjct: 6 VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVRG 124
GHE AG V +G GV +EVGD+V + E CG C CR ++C +
Sbjct: 66 GHEVAGEVVEIGPGVEGIEVGDYV----SVETHIVCGKCYACRRGQYHVCQNTK------ 115
Query: 125 VMLADGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCI---LSC 178
G T F+EY VV + + K P + + L
Sbjct: 116 -------------------IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGN 156
Query: 179 GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238
V T L + G SV + G G +GL A+ +GA +I + S R E AKK
Sbjct: 157 AVDTVLAGPI------SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK 210
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVG 297
G +N E D + + + ++T+G GVD +E +G + + V G L+G
Sbjct: 211 VGADYVINPFEED--VVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLG 267
Query: 298 VPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIP-F 356
+ + + T+ G +V + + +L L+ ITH+ F
Sbjct: 268 LYPGKVTIDFNNLIIFKALTIYGIT--GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGF 325
Query: 357 SEINKAFEYMVKGEGLRCIISME 379
+ +AFE M G+ + + ++
Sbjct: 326 DKYEEAFELMRAGKTGKVVFMLK 348
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 6e-75
Identities = 81/373 (21%), Positives = 140/373 (37%), Gaps = 51/373 (13%)
Query: 12 KAAVAWEAGKPLIIQDVEV-APPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
K+ V + + + + + EVR+KI + LC +DL K +P GH
Sbjct: 2 KSVV-NDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF-KNGAHYYPITLGH 59
Query: 71 EAAGVVESVGEGVSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
E +G +++VG GV DL GD V P+ C C C + C
Sbjct: 60 EFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCAKYD---------- 107
Query: 129 DGQSRFSINGEPVNHFLGTS---TFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGVST 182
F+G+ F+EY VV V + P++ ++ G+
Sbjct: 108 ---------------FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL-- 150
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
++A+ +V + G G +GL A + A GA + +D SS++ AK FG
Sbjct: 151 ---HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM 207
Query: 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301
N+SE ++ + + +E G + A E LVG +
Sbjct: 208 QTFNSSEMS--APQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQ 264
Query: 302 DAVFMTKPIN--VLNERTLKGTF--FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFS 357
D + + E T+ G++ + + P + + + ++L LE I HR F
Sbjct: 265 DLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFE 324
Query: 358 EINKAFEYMVKGE 370
+A + +
Sbjct: 325 SFAQAVRDIARNA 337
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 4e-74
Identities = 84/378 (22%), Positives = 152/378 (40%), Gaps = 55/378 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGH 70
KA E+ + +++V + P ++ +K++ +C TD + G+ P P GH
Sbjct: 25 KAVR-LESVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH--GEFPSTPPVTLGH 81
Query: 71 EAAGVVESVGEGVSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
E G+V G V D+ G + P + CG C C++ N+C LR
Sbjct: 82 EFCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLCRNLR---------- 129
Query: 129 DGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCI---LSCGVST 182
+G F+EY +V +I L+C +
Sbjct: 130 ---------------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-- 172
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
++++ + GS+VA+ G G +GL + AR+AGA+ +I R + + A++ G T
Sbjct: 173 ---HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT 229
Query: 243 DFVNTSEHDRPIQEVIAEMTNG---GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299
V+ S D + E IA GVD +EC G + + + G G V++GV
Sbjct: 230 ATVDPSAGD--VVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVL 286
Query: 300 SKDAVFMTKPINVL-NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSE 358
+ +P ++L E + G+F + D+ +E+++ I+ RI E
Sbjct: 287 PQGEKVEIEPFDILFRELRVLGSFINPF----VHRRAADLVATGAIEIDRMISRRISLDE 342
Query: 359 INKAFEYMVKGEGLRCII 376
++ ++
Sbjct: 343 APDVISNPAAAGEVKVLV 360
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 4e-74
Identities = 87/378 (23%), Positives = 155/378 (41%), Gaps = 45/378 (11%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEV-APPQAMEVRIKIKYTSLCRTDLYFWE---SK 58
S + + KAA E KPL I+DV+ +V ++I +C TDL+ + +
Sbjct: 8 SQSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHE 67
Query: 59 GQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLR 118
P P GHE G +E V EGV LE GD V+ G C CR+ C+ L
Sbjct: 68 LLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLE 127
Query: 119 INPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN---PLAPLDKVCI 175
+I+G F+E+ V K+ L ++
Sbjct: 128 F------------PGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMAP 165
Query: 176 LSCGVSTGLGATLNVAKP--ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233
L+ T A + A G+ VA+ G+G +G A + ++ + +I +D ++
Sbjct: 166 LADAGITAYRA-VKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224
Query: 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGV 292
+ A++ G V+ P+++V+ E+T G GV+ +++ G+ + + G
Sbjct: 225 KLAERLGADHVVDARRD--PVKQVM-ELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GR 280
Query: 293 AVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITH 352
++VG + + +E + +G+ GN +L +V + + ++ +E
Sbjct: 281 LIIVGYGGELRFPT--IRVISSEVSFEGSLVGN---YVELHELVTLALQGKVRVE---VD 332
Query: 353 RIPFSEINKAFEYMVKGE 370
EIN E + KGE
Sbjct: 333 IHKLDEINDVLERLEKGE 350
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 5e-69
Identities = 84/385 (21%), Positives = 152/385 (39%), Gaps = 60/385 (15%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF----PRI 67
+ V L +++ + P EV +++ +C +D+++WE G+ F P +
Sbjct: 9 LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWE-YGRIGNFIVKKPMV 66
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHCRSDVSNMCDLLRINPVR 123
GHEA+G VE VG V L+ GD V E + C+ N+ +
Sbjct: 67 LGHEASGTVEKVGSSVKHLKPGDRV----AIEPGAPRENDEFCKMGRYNLSPSIF---FC 119
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI---LSCGV 180
DG + ++ K+ ++ + LS G+
Sbjct: 120 ATPPDDG------------------NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI 161
Query: 181 STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
G V V G G +G+ A+ GA++++ D S+ R +AK+ G
Sbjct: 162 -----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216
Query: 241 VTDFVNTSEHDRPIQEVIAEMTN---GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG 297
+ S+ QE+ ++ + ++ECTG ++ + G G VLVG
Sbjct: 217 ADLVLQISKES--PQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVG 273
Query: 298 VPSKDAVFMTKPIN--VLNERTLKGTF-FGNYKPRTDLPSVVDMYMNKQLELEKFITHRI 354
+ S+ P+ + E +KG F + N P + M +K + ++ +THR
Sbjct: 274 LGSEMTTV---PLLHAAIREVDIKGVFRYCN-----TWPVAISMLASKSVNVKPLVTHRF 325
Query: 355 PFSEINKAFEYMVKGEGLRCIISME 379
P + +AFE KG GL+ ++ +
Sbjct: 326 PLEKALEAFETFKKGLGLKIMLKCD 350
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-68
Identities = 76/398 (19%), Positives = 142/398 (35%), Gaps = 69/398 (17%)
Query: 12 KAAVAWEAGKPLIIQDVEV-APPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPL----- 63
+ W + + +++V + E+ IK+K +C +D+ + +G
Sbjct: 32 LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90
Query: 64 FPRIFGHEAAGVVESVGEGVSD------LEVGDHVL--PVFTGECGDCRHCRSDVSNMCD 115
FP GHE +GVV G + E+G+ V + CG CR C N C+
Sbjct: 91 FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGHCRPCAEGFPNHCE 148
Query: 116 LLRINPVRGVMLADGQSRFSINGEPVNHFLGTS---TFSEYTVVHSGCVAKINPLAPLDK 172
L LG + F+EY V + + L + +
Sbjct: 149 NLN-------------------------ELGFNVDGAFAEYVKVDAKYAWSLRELEGVYE 183
Query: 173 VCI----------LSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASR 222
S + + G +V + G G +GLAA + AGAS+
Sbjct: 184 GDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASK 240
Query: 223 IIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMIS 281
+I + S R AK+ G ++ ++ + E + + TNG G +E TG +
Sbjct: 241 VILSEPSEVRRNLAKELGADHVIDPTKEN--FVEAVLDYTNGLGAKLFLEATGVPQLVWP 298
Query: 282 AFECV-HDGWGVAVLVGVPSKDAVFMTKPIN--VLNERTLKGTFFGNYKPRTDLPSVVDM 338
E V G+ V + ++ + + + G+ + P V+ +
Sbjct: 299 QIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ--GHSGHGTFPRVISL 356
Query: 339 YMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 376
M +++ K I+ + EI + + + + L +
Sbjct: 357 -MASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVT 393
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 4e-68
Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 40/368 (10%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE--------SKGQTPL 63
+A E GKPL +Q++ V P+ +V IK++ +C +D++ + +
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
P GHE AG +E VG+ V GD V G+C +CR ++CD R
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLG-- 119
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
+ +G ++EY +V + L+C T
Sbjct: 120 ----------INFDG----------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159
Query: 184 LGATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242
A + A + ++ V G G +G A + A+ + IIGVD + E AK+ G
Sbjct: 160 YRA-VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD 218
Query: 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+N S D P+ E+ + GVD ++ + + + + G V+VG+ D
Sbjct: 219 YVINASMQD-PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGAD 276
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
+ I L+E G+ GN ++D ++ + + +++ IT + E N+A
Sbjct: 277 LHYHAPLI-TLSEIQFVGSLVGN---QSDFLGIMRLA--EAGKVKPMITKTMKLEEANEA 330
Query: 363 FEYMVKGE 370
+ + +
Sbjct: 331 IDNLENFK 338
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 1e-66
Identities = 84/393 (21%), Positives = 145/393 (36%), Gaps = 63/393 (16%)
Query: 1 MSSTA-----GLILTCKAAVAWEAGKPLIIQDVEVAP-PQAMEVRIKIKYTSLCRTDLYF 54
M+S+A G+ + + W + ++ V+ + EV + ++ T +C +D++F
Sbjct: 1 MASSASKTNIGVFTNPQHDL-WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHF 59
Query: 55 WESKGQTPLF----PRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGE----CGDCRHC 106
W+ G + GHE+AG V +V V ++VGD V E C C C
Sbjct: 60 WK-HGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRV----AIEPQVICNACEPC 114
Query: 107 RSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166
+ N C+ + G Y + KI
Sbjct: 115 LTGRYNGCERVD---FLSTPPVPG------------------LLRRYVNHPAVWCHKIGN 153
Query: 167 LAPLDKVCI--LSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRII 224
++ + + LS + A L A G V + G G +GL A+ AGA ++
Sbjct: 154 MSYENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLV 208
Query: 225 GVDRSSKRFEEAKKFGVTDFVNTSEHDRP--IQEVIAEMTNG-GVDRSVECTGNIDNMIS 281
D R + AK+ + E + I E G ++ECTG ++ +
Sbjct: 209 ITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAA 268
Query: 282 AFECVHDGWGVAVLVGVPSKDAVFMTKPIN--VLNERTLKGTF-FGNYKPRTDLPSVVDM 338
A V G G ++GV + P + E L+ + + N P + +
Sbjct: 269 AIWAVKFG-GKVFVIGVGKNEIQI---PFMRASVREVDLQFQYRYCN-----TWPRAIRL 319
Query: 339 YMNKQLELEKFITHRIPFSEINKAFEYMVKGEG 371
N ++L + +THR P + KAFE +
Sbjct: 320 VENGLVDLTRLVTHRFPLEDALKAFETASDPKT 352
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 4e-65
Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 42/368 (11%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE--SKGQTPLFPRI 67
KAA+ + +PL I+DV + PQ EV I+I +CRTDL W+ Q P I
Sbjct: 3 KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE AG + VGE ++ ++ GD+V+ T CR+CR N+C I G
Sbjct: 63 LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIP---G--- 115
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGA- 186
+ NG FSEY +V S + L+ +T +GA
Sbjct: 116 ------QTTNG----------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAI 159
Query: 187 --TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVTD 243
L V V G+G + + + + + I+G+ RS K + A + G
Sbjct: 160 RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY 219
Query: 244 FVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302
+ + +I ++T+G G +++ G + + + + G +LVG+ K
Sbjct: 220 VSEMKD----AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKR 274
Query: 303 AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
+ + L G+ +G+ DL VV + + +++ ++P +INKA
Sbjct: 275 VSLEAFDT-AVWNKKLLGSNYGS---LNDLEDVVRLSESGKIKP---YIIKVPLDDINKA 327
Query: 363 FEYMVKGE 370
F + +G
Sbjct: 328 FTNLDEGR 335
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 6e-63
Identities = 85/379 (22%), Positives = 147/379 (38%), Gaps = 63/379 (16%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF----PRI 67
+AV L ++ + P+ EV +++ Y +C +D++++E G+ F P +
Sbjct: 6 LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYE-HGRIADFIVKDPMV 63
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
GHEA+G V VG+ V L+ GD V P C C+ C+ N+C L
Sbjct: 64 IGHEASGTVVKVGKNVKHLKKGDRVAVEPGVP--CRRCQFCKEGKYNLCPDLT------- 114
Query: 126 MLADGQSRFSINGEPVNHFLGTS----TFSEYTVVHSGCVAKINPLAPLDK-VCI--LSC 178
F T + Y V + K+ L++ + LS
Sbjct: 115 ------------------FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSV 156
Query: 179 GVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238
GV A + G++V V G G +GL + A+ GA ++ RS +R E AK
Sbjct: 157 GV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN 210
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNG---GVDRSVECTGNIDNMISAFECVHDGWGVAVL 295
G + +I + + + +++C+GN + G G +L
Sbjct: 211 CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLML 269
Query: 296 VGVPSKDAVFMTKPIN--VLNERTLKGTF-FGNYKPRTDLPSVVDMYMNKQLELEKFITH 352
VG+ S+ P+ E +K F + N D P ++M + + +++ +TH
Sbjct: 270 VGMGSQMVTV---PLVNACAREIDIKSVFRYCN-----DYPIALEMVASGRCNVKQLVTH 321
Query: 353 RIPFSEINKAFEYMVKGEG 371
+ AFE K
Sbjct: 322 SFKLEQTVDAFEAARKKAD 340
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-61
Identities = 72/370 (19%), Positives = 121/370 (32%), Gaps = 46/370 (12%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDL--YFWESKGQTPL-FPRIF 68
KA ++ + P++ E ++ +C TD G +
Sbjct: 2 KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVL--PVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
GHEA GVV V ++LE GD V+ G + D +M V
Sbjct: 62 GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI--LSCGV-STG 183
G SE+ + +I I +S +
Sbjct: 120 A-HG------------------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE 160
Query: 184 LGATLNVAKPERGSSVAVFGLGAVGLAAAEGARI--AGASRIIGV---DRSSKRFEEAKK 238
A SS V G G++GL ++ G + + DR + ++
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298
T +V++ + E + ++ +D E TG + I + + + GV L+GV
Sbjct: 221 LDAT-YVDSRQTP---VEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGV 274
Query: 299 PSKDAVFMTKPIN----VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRI 354
PS A + VL+ + L G+ N + V + LE +T
Sbjct: 275 PSDWAFEVDAGAFHREMVLHNKALVGSV--NSHVEHFEAATVTFTKLPKWFLEDLVTGVH 332
Query: 355 PFSEINKAFE 364
P SE AF+
Sbjct: 333 PLSEFEAAFD 342
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-60
Identities = 66/390 (16%), Positives = 119/390 (30%), Gaps = 55/390 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEV-APPQAMEVRIKIKYTSLCRTDL-----YFWESKGQTPLFP 65
KA + + ++DV+ +++I+ Y +C D S
Sbjct: 2 KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 66 RIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGV 125
+ GHEA GVVE G S GD V+PV CG CR+C + C+ G+
Sbjct: 62 LVLGHEAIGVVEESYHGFS---QGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGI 117
Query: 126 MLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI--LSCGV--- 180
DG E+ + KI + L+
Sbjct: 118 HKMDG------------------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159
Query: 181 ------STGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE 234
+ V V G G +G+ R G + R E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219
Query: 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG-NIDNMISAFECVHDGWGVA 293
+ S + + + + G D ++ TG +++ + + + GV
Sbjct: 220 QTVIEETKTNYYNSSNG---YDKLKDSV-GKFDVIIDATGADVNILGNVIPLLGRN-GVL 274
Query: 294 VLVGVPSKDAV-FMTKPIN--VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE----L 346
L G + +V K + V +T+ G G + V + +
Sbjct: 275 GLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQ---KPHFQQAVVHLASWKTLYPKAA 331
Query: 347 EKFITHRIPFSEINKAFEYMVKGEGLRCII 376
+ IT + ++ + + + + E I
Sbjct: 332 KMLITKTVSINDEKELLKVLREKEHGEIKI 361
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 4e-57
Identities = 80/368 (21%), Positives = 131/368 (35%), Gaps = 48/368 (13%)
Query: 14 AVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAA 73
A + + + E P + ++ + C +D++ I GHEA
Sbjct: 3 GFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAV 62
Query: 74 GVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSR 133
G V VG V D + GD V+ + + +
Sbjct: 63 GEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGM-----------LAGWK 111
Query: 134 FS--INGEPVNHFLGTSTFSEYTVVH---SGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
FS +G F E+ V+ + PL+ ++ ++TG
Sbjct: 112 FSNVKDG----------VFGEFFHVNDADMNLA-HLPKEIPLEAAVMIPDMMTTGFHGAE 160
Query: 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248
A + G +V V G+G VGL + GA GA RI V + A ++G TD +N
Sbjct: 161 L-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK 219
Query: 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMT 307
D I E I + T+G GVD+ V G++ A + + G V
Sbjct: 220 NGD--IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLG------- 269
Query: 308 KPINVLNERTLKGTFFGNYK--------PRTDLPSVVDMYMNKQLELEKFITHRIP-FSE 358
+ N+ R+ G G+ R + ++D+ K+++ K +TH F
Sbjct: 270 EGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDN 329
Query: 359 INKAFEYM 366
I KAF M
Sbjct: 330 IEKAFMLM 337
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-54
Identities = 97/367 (26%), Positives = 148/367 (40%), Gaps = 45/367 (12%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIF 68
KAAV G PL I +V V P +V++KI+ + +C TDL+ + P P I
Sbjct: 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE G V +VG GVS ++ GD V +P CG C HC +C+ +
Sbjct: 62 GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQN-------- 113
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSC-GVSTGLGA 186
+ +S+NG + EY V V + ++ + C GV T
Sbjct: 114 ----TGYSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-TVYKG 158
Query: 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246
L V G V + G+G +G A + AR G R+ VD + A++ G VN
Sbjct: 159 -LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVN 216
Query: 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA--- 303
+ D P + E+ GG + + A V G G L G+P D
Sbjct: 217 ARDTD-PAAWLQKEI--GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGDFGTP 272
Query: 304 VFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAF 363
+F VL T++G+ G R+DL +D + + K ++N F
Sbjct: 273 IFDV----VLKGITIRGSIVGT---RSDLQESLDFAAHGDV---KATVSTAKLDDVNDVF 322
Query: 364 EYMVKGE 370
+ +G+
Sbjct: 323 GRLREGK 329
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-53
Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 47/370 (12%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIF 68
T K + +E+ L +D+ V P+A E+ I +KY+ +C TDL+ W P +
Sbjct: 5 TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE AGVV +GE V ++GD+ + G C C +C + C +
Sbjct: 65 GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL-------- 116
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSC-GVSTGLGA 186
S ++ +G +F +Y + A I L +V + C G++
Sbjct: 117 ----SGYTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKA- 161
Query: 187 TLNVAKPERGSSVAVFGLG------AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240
L A G VA+ G AV A A G R++G+D + E + G
Sbjct: 162 -LKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY------RVLGIDGGEGKEELFRSIG 214
Query: 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300
F++ ++ + V+ T+GG + + + + ++ V G VLVG+P+
Sbjct: 215 GEVFIDFTKEKDIVGAVLKA-TDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPA 272
Query: 301 KDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
V+ ++ G++ GN R D +D + + K + S +
Sbjct: 273 GAKCCSDVFNQVVKSISIVGSYVGN---RADTREALDFFARGLV---KSPIKVVGLSTLP 326
Query: 361 KAFEYMVKGE 370
+ +E M KG+
Sbjct: 327 EIYEKMEKGQ 336
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-53
Identities = 110/381 (28%), Positives = 171/381 (44%), Gaps = 56/381 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIFGH 70
KAAV + +PL I++VE EV ++IK +C TDL+ P P I GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 71 EAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
E G+VE VG GV+ L+VGD V +P CG C +C S +C+ +
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---------- 111
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSC-GVSTGLGATL 188
+ +S++G ++EY + V KI ++ + C GV+T L
Sbjct: 112 --AGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA--L 157
Query: 189 NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243
V + G VA++G+G AV A A G ++ VD ++ E AK+ G
Sbjct: 158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL------NVVAVDIGDEKLELAKELGADL 211
Query: 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD- 302
VN + D + + E GGV +V + SA+ + G G VLVG+P ++
Sbjct: 212 VVNPLKED--AAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEM 267
Query: 303 --AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEIN 360
+F T VLN + G+ G R DL + ++ K I P +IN
Sbjct: 268 PIPIFDT----VLNGIKIIGSIVGT---RKDLQEALQFAAEGKV---KTIIEVQPLEKIN 317
Query: 361 KAFEYMVKGEGL-RCIISMED 380
+ F+ M+KG+ R ++++ED
Sbjct: 318 EVFDRMLKGQINGRVVLTLED 338
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-48
Identities = 73/389 (18%), Positives = 141/389 (36%), Gaps = 53/389 (13%)
Query: 21 KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFP-RIFGHEAAGVVESV 79
P + + + +K+ T++C +D + + G+ + + GHE G V
Sbjct: 21 YPKLEHNNRKLEHAVI---LKVVSTNICGSDQHIYR--GRFIVPKGHVLGHEITGEVVEK 75
Query: 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGE 139
G V +++GD V F CG CR+C+ S++C+ +NP + G
Sbjct: 76 GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL---------GAFGF 126
Query: 140 PVNHFLGTSTFSEYTVV---HSGCVA---KINPLAPLDKVCILSCGVSTGLGATLNVAKP 193
+ + G +EY +V + K + + + ++S + TG ++ A
Sbjct: 127 DLKGWSGGQ--AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVS-AGV 183
Query: 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253
+ GS V + G G VG AA GAR+ GA+ +I D++ +R + G ++ P
Sbjct: 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFET-IDLRNSA-P 241
Query: 254 IQEVIAEMTNG-GVDRSVECTG--------------NIDNMISAFECVHDGWGVAVLVGV 298
+++ I ++ VD V+ G + S F+ V G + + G+
Sbjct: 242 LRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI-PGI 300
Query: 299 PSKDAVFMTKPINVLNERTLK-GTFF--------GNYKPRTDLPSVVDMYMNKQLEL--E 347
L G + G + + + Q+ +
Sbjct: 301 YVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSK 360
Query: 348 KFITHRIPFSEINKAFEYMVKGEGLRCII 376
I + + KG + +I
Sbjct: 361 VMNIEVITLDQAPDGYAKFDKGSPAKFVI 389
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 5e-47
Identities = 78/390 (20%), Positives = 136/390 (34%), Gaps = 55/390 (14%)
Query: 21 KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFP-RIFGHEAAGVVESV 79
P + V +K+ T++C +D + G+T + GHE G V
Sbjct: 21 YPKMQDPRGKKIEH--GVILKVVSTNICGSDQHMVR--GRTTAQVGLVLGHEITGEVIEK 76
Query: 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRF-SING 138
G V +L++GD V F CG CR C+ + +C +NP R G G
Sbjct: 77 GRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCL--TVNPARAGGAY-GYVDMGDWTG 133
Query: 139 EPVNHFLGTSTFSEYTVV---HSGCVA---KINPLAPLDKVCILSCGVSTGLGATLNVAK 192
+EY +V + + + + + LS + TG + A
Sbjct: 134 ----------GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVT-AG 182
Query: 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252
GS+V V G G VGLAAA AR+ GA+ +I D + R AK G + S
Sbjct: 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI-ADLSLDT- 240
Query: 253 PIQEVIAEMTNG-GVDRSVECTG---------------NIDNMISAFECVHDGWGVAVLV 296
P+ E IA + VD +V+ G + S + + +
Sbjct: 241 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI-P 299
Query: 297 GVPSKDAVFMTKPINVLNERTLK-GTFF--------GNYKPRTDLPSVVDMYMNKQLELE 347
G+ + + +++ G + G +++ M ++ +
Sbjct: 300 GLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIA 359
Query: 348 K-FITHRIPFSEINKAFEYMVKGEGLRCII 376
+ I + + + G + +I
Sbjct: 360 EVVGVQVISLDDAPRGYGEFDAGVPKKFVI 389
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 8e-33
Identities = 77/368 (20%), Positives = 138/368 (37%), Gaps = 45/368 (12%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIF 68
+A V G P L + D+ V P EVR+++K +L D++ + L P +
Sbjct: 2 RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G + +GVV++VG GV GD V+ CG C C + N+C
Sbjct: 62 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCP------------- 108
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
R+ I GE + G T++EY V+ +A ++ + T +
Sbjct: 109 ----RYQILGEHRH---G--TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVV 159
Query: 189 NVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
+ G V V V +AA + A++ GA R+I S + AK G + VN
Sbjct: 160 DKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNY 218
Query: 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
+ D + + +T G G D+ V+ TG + +G G + G S
Sbjct: 219 THPD--WPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGYEG-- 272
Query: 307 TKPINV----LNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKA 362
+ + ++ G+ ++ L ++ +L+ + +P +
Sbjct: 273 --TLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLKP--VVGQVLPLEAAAEG 325
Query: 363 FEYMVKGE 370
+ +
Sbjct: 326 HRLLEERR 333
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 94/392 (23%), Positives = 141/392 (35%), Gaps = 89/392 (22%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
L KA A+ A +PL D+ P +V+I+I Y +C +DL+ S+ ++P +
Sbjct: 21 LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVP 80
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE G V +VG+ V GD V + C C C + N CD
Sbjct: 81 GHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCD------------ 128
Query: 128 ADGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKI-NPLAPLDKVCILSCGVSTG 183
+ N T +S+ VVH V +I +P L V L C
Sbjct: 129 ---HMTGTYNS--PTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCA---- 179
Query: 184 LGATL------NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKR 232
G T A P G V V G+G + LA A GA + + S +
Sbjct: 180 -GITTYSPLRHWQAGP--GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT------TSEAK 230
Query: 233 FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-- 290
E AK G + VN+ D EM + D +++ H+
Sbjct: 231 REAAKALGADEVVNSRNAD--------EMA--------AHLKSFDFILNTVAAPHN-LDD 273
Query: 291 --------GVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
G LVG P+ ++ R + G+ G +P +M
Sbjct: 274 FTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG------IPETQEM---- 323
Query: 343 QLEL--EKFITH---RIPFSEINKAFEYMVKG 369
L+ E I I +IN+A+E M++G
Sbjct: 324 -LDFCAEHGIVADIEMIRADQINEAYERMLRG 354
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-32
Identities = 75/353 (21%), Positives = 123/353 (34%), Gaps = 45/353 (12%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPRIFGHEAAGVVESV 79
L + + V ++ ++ SL D + L FP + + +GVVE+V
Sbjct: 41 LKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAFPFVPASDMSGVVEAV 98
Query: 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGE 139
G+ V+ GD V+ F D + + + L G
Sbjct: 99 GKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETL--------------------GG 138
Query: 140 PVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSV 199
G SEY V+ G + L C T A + G V
Sbjct: 139 AHP---G--VLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRV 193
Query: 200 AVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259
V G G V L + A+ GA +I S ++ + A G +N E D E +
Sbjct: 194 VVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEED--WVERVY 250
Query: 260 EMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NER 316
+T G D +E G + + + V G ++GV V + P+ L
Sbjct: 251 ALTGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGVLEGFEV--SGPVGPLLLKSP 306
Query: 317 TLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG 369
++G G R L +V +L L+ I R F+E+ +A ++ +G
Sbjct: 307 VVQGISVG---HRRALEDLVGAV--DRLGLKPVIDMRYKFTEVPEALAHLDRG 354
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 6e-31
Identities = 81/391 (20%), Positives = 134/391 (34%), Gaps = 90/391 (23%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
A + L + +VR K+ Y +C +DL+ ++ ++P + G
Sbjct: 16 KAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPG 75
Query: 70 HEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
HE G V VG V + VGD V + G C C C +D+ N C
Sbjct: 76 HEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCP------------- 122
Query: 129 DGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
+ + + GT T +S + V + + + PLD L C G
Sbjct: 123 --KMILTYASIYHD---GTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCA-----G 172
Query: 186 ATL-------NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRF 233
T+ + +P G + + GLG AV A A G+++ S SK+
Sbjct: 173 ITVYSPLKYFGLDEP--GKHIGIVGLGGLGHVAVKFAKAFGSKVTVIST-----SPSKKE 225
Query: 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW--- 290
E K FG F+ + + + +M G +D +I VH
Sbjct: 226 EALKNFGADSFLVSRDQE--------QMQ--------AAAGTLDGIIDTVSAVHP-LLPL 268
Query: 291 -------GVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQ 343
G +LVG P K + + + + G+ G + +M
Sbjct: 269 FGLLKSHGKLILVGAPEKPLELPAFSL-IAGRKIVAGSGIGG------MKETQEM----- 316
Query: 344 LEL--EKFITH---RIPFSEINKAFEYMVKG 369
++ + IT I +N A E + K
Sbjct: 317 IDFAAKHNITADIEVISTDYLNTAMERLAKN 347
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-31
Identities = 89/391 (22%), Positives = 142/391 (36%), Gaps = 90/391 (23%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
A + L + +V I+I +C TDL+ ++ +P + G
Sbjct: 9 KTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPG 68
Query: 70 HEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
HE G V VG VS VGD V + G CG C C D+ C + +
Sbjct: 69 HEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCP-------KKI--- 118
Query: 129 DGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLG 185
+S N +N G T F++ TVVH V KI +++ L C G
Sbjct: 119 -----WSYNDVYIN---GQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCA-----G 165
Query: 186 ATL-------NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRF 233
T+ + +P G + GLG V +A A G + S + KR
Sbjct: 166 VTVYSPLSHFGLKQP--GLRGGILGLGGVGHMGVKIAKAMGHHVTVISS-----SNKKRE 218
Query: 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW--- 290
E + G D+V S+ +M+ E ++D +I H
Sbjct: 219 EALQDLGADDYVIGSDQA--------KMS--------ELADSLDYVIDTVPVHHA-LEPY 261
Query: 291 -------GVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQ 343
G +L+GV + F+T + +L + + G+F G+ + +M
Sbjct: 262 LSLLKLDGKLILMGVINNPLQFLTPLL-MLGRKVITGSFIGS------MKETEEM----- 309
Query: 344 LEL--EKFITH---RIPFSEINKAFEYMVKG 369
LE EK ++ + +N AFE + K
Sbjct: 310 LEFCKEKGLSSIIEVVKMDYVNTAFERLEKN 340
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 56/389 (14%), Positives = 115/389 (29%), Gaps = 71/389 (18%)
Query: 21 KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-------------------- 60
K L + +V + EV + + +S+ + W + +
Sbjct: 48 KSLRLGEVPMPELAPDEVLVAVMASSINYNTV--WSAMFEPIPTFHFLKQNARQGGWATR 105
Query: 61 TPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN 120
+ G + +GVV G GV + GDHV+ V + + R
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA- 163
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
G G +EY VV + + ++ +
Sbjct: 164 --WGFETNFG------------------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203
Query: 181 STGLGA--TLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237
T + A+ ++G V ++G G +G A + + G + V S+++ +
Sbjct: 204 GTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVR 262
Query: 238 KFGVTDFVNTSEHD----------------RPIQEVIAEMTNGGVDRSVECTGNIDNMIS 281
G +N +E R + +++ E D E TG
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR-VTFGL 321
Query: 282 AFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMN 341
+ G G V G S + + + G+ N + + ++ +
Sbjct: 322 SVIVARRG-GTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFES 377
Query: 342 KQLELEKFITHRIPFSEINKAFEYMVKGE 370
+ ++ P +E +A +
Sbjct: 378 GAVVPA--MSAVYPLAEAAEACRVVQTSR 404
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 5e-30
Identities = 59/403 (14%), Positives = 116/403 (28%), Gaps = 78/403 (19%)
Query: 12 KAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT------- 61
A + P + + DV V E + + +S+ + S +
Sbjct: 44 FAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSV--HTSIFEPLSTFGFL 101
Query: 62 -------------PLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRS 108
L + G + AGVV G GV+ + GD V+ + +
Sbjct: 102 ERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHN 161
Query: 109 DVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168
D + + G G +E +V S +
Sbjct: 162 DTMLDPE----QRIWGFETNFG------------------GLAEIALVKSNQLMPKPDHL 199
Query: 169 PLDKVCILSCGVSTGLGA--TLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIG 225
++ ST + N A ++G +V ++G G +G A + A GA I
Sbjct: 200 SWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPIC 258
Query: 226 VDRSSKRFEEAKKFGVTDFVNTSEHDRPIQ---------------EVIAEMTNG-GVDRS 269
V S ++ E + G ++ + + I E+T G +D
Sbjct: 259 VVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIV 318
Query: 270 VECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NERTLKGTFFGNYK 327
E G + ++ G G S L + + + G+ F N
Sbjct: 319 FEHPGR-ETFGASVFVTRKG-GTITTCASTSGYMH--EYDNRYLWMSLKRIIGSHFAN-- 372
Query: 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370
+ + + + ++ + +A + +
Sbjct: 373 -YREAWEANRLI--AKGRIHPTLSKVYSLEDTGQAAYDVHRNL 412
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 70/378 (18%), Positives = 125/378 (33%), Gaps = 76/378 (20%)
Query: 12 KAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRI 67
+A V G P + ++++E+A + +VR+K+ + +D+ + G P P +
Sbjct: 28 RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAV 87
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
G+E V +VG V+ L+ GD V+P G
Sbjct: 88 GGNEGVAQVVAVGSNVTGLKPGDWVIPANAG----------------------------- 118
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
LG T+ V + ++ PL L T
Sbjct: 119 -----------------LG--TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRML 159
Query: 188 LNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE----AKKFGVT 242
++ + + G SV VG A + A G R I V R ++ K G
Sbjct: 160 MDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAE 218
Query: 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301
+ E RP E+ + ++ C G + + G G V G +K
Sbjct: 219 HVITEEELRRP--EMKNFFKDMPQPRLALNCVGG-KSSTELLRQLARG-GTMVTYGGMAK 274
Query: 302 DAVFMTKPINVL--NERTLKGTFFGNYKPRTD-------LPSVVDMYMNKQLELEKFITH 352
V +++L + L+G + +K + ++ D+ QL
Sbjct: 275 QPV--VASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACS 330
Query: 353 RIPFSEINKAFEYMVKGE 370
++P + A E +K
Sbjct: 331 QVPLQDYQSALEASMKPF 348
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 3e-29
Identities = 79/392 (20%), Positives = 136/392 (34%), Gaps = 92/392 (23%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+ K + + D +V I I Y +C +D++ S+ + ++P I
Sbjct: 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE AG+++ VG+GV ++GD V + F C C+ C+ C
Sbjct: 63 GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT------------ 110
Query: 128 ADGQSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+ F+ + H +S VV V ++ APL+KV L C
Sbjct: 111 ---KVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCA----- 161
Query: 185 GATL------NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRF 233
G T + G+ V V G G AV A A GA ++ +R K+
Sbjct: 162 GITTYSPLKFSKVTK--GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFAR-----NEHKK- 213
Query: 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD----- 288
++A GV F + +C +D +IS +D
Sbjct: 214 QDALSMGVKHFYTDPK---------------------QCKEELDFIISTIPTHYDLKDYL 252
Query: 289 ----GWGVAVLVGVPSKDAVFMTKPINVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
G LVG+P + + + + R + G+ G + +M
Sbjct: 253 KLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG------IKETQEM---- 302
Query: 343 QLEL--EKFIT---HRIPFSEINKAFEYMVKG 369
++ + I I +I+ A+ + G
Sbjct: 303 -VDFSIKHNIYPEIDLILGKDIDTAYHNLTHG 333
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-25
Identities = 82/391 (20%), Positives = 133/391 (34%), Gaps = 92/391 (23%)
Query: 13 AAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEA 72
A + E K + P ++ IKI+ +C +D++ P + GHE
Sbjct: 11 AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEI 70
Query: 73 AGVVESVGEGV-SDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G V +G S L+VG V + C +C C++D C + V
Sbjct: 71 VGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCT-------KFV----- 118
Query: 131 QSRFSINGEPVNHFLGTST---FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
+ + + G + ++ Y VH V I P L CG G T
Sbjct: 119 ---TTYSQPYED---GYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCG-----GLT 167
Query: 188 L------NVAKPERGSSVAVFGLG-----AVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236
+ N P G V + GLG ++ A GA SR S KR E+A
Sbjct: 168 VYSPLVRNGCGP--GKKVGIVGLGGIGSMGTLISKAMGAETYVISR-----SSRKR-EDA 219
Query: 237 KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW------ 290
K G ++ T E + + D ++ + D
Sbjct: 220 MKMGADHYIATLEE--------GDWGE-------KYFDTFDLIVVCASSLTDIDFNIMPK 264
Query: 291 -----GVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345
G V + +P + + KP L ++ + G+ + + + L+
Sbjct: 265 AMKVGGRIVSISIPEQHEMLSLKPY-GLKAVSISYSALGS------IKELNQL-----LK 312
Query: 346 L--EKFITH---RIPFSE--INKAFEYMVKG 369
L EK I +P E +++AFE M KG
Sbjct: 313 LVSEKDIKIWVETLPVGEAGVHEAFERMEKG 343
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 69/390 (17%), Positives = 118/390 (30%), Gaps = 83/390 (21%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
A + + + +V ++++ ++ +D +GQ G +
Sbjct: 13 TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
AG V +VG V+ ++VGD V G P +G
Sbjct: 70 YAGTVVAVGSDVTHIQVGDRV-------YGAQNEMCPR----------TPDQG------- 105
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST--------- 182
FS+YTV AKI ++ L G+ST
Sbjct: 106 -----------------AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLG 148
Query: 183 -GLGATLNVAKPERGSSVAVF---GLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238
L + P V V G A + R++G I S F+ AK
Sbjct: 149 LPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC--SPHNFDLAKS 206
Query: 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWG-VAVLVG 297
G + + + + I T + +++C N+++ F + G L
Sbjct: 207 RGAEEVFDY--RAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNP 264
Query: 298 VPSKDAVFMTKPINVLNERTLKGTFFG---NYKPRTDLPSVVDM---------YMNKQLE 345
P A V + TL T FG + P + + +E
Sbjct: 265 FPEHAA----TRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVE 320
Query: 346 LEKFITHRIP-----FSEINKAFEYMVKGE 370
+ + H + F I + E + KGE
Sbjct: 321 DGRLVHHPLRVVQGGFDHIKQGMELVRKGE 350
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 2e-23
Identities = 66/404 (16%), Positives = 117/404 (28%), Gaps = 101/404 (25%)
Query: 8 ILTCKAAVAWEAGKP---LIIQDVEVAPPQ--AMEVRIKIKYTSLCRTDLYF-------- 54
++T +A + + G+P L Q E+ EV +K + + +D+
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 55 --WESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSN 112
+ T G+E V VG VS LE GD V+P
Sbjct: 61 PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFG------------ 108
Query: 113 MCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK 172
T+ + + + K+ P K
Sbjct: 109 ------------------------------------TWRTHALGNDDDFIKL-PNPAQSK 131
Query: 173 VCILSCGVSTGLGATLNV------------AKPERGSSVAVF--GLGAVGLAAAEGARIA 218
G++ GAT++V K G + G AVG A++ ++
Sbjct: 132 ANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL 191
Query: 219 GASRIIGVDRSSKRFEE----AKKFGVTDFVNTSEHD-RPIQEVIAEMTN---GGVDRSV 270
I V R +E K+ G T + +++ R I E G ++
Sbjct: 192 NF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLAL 250
Query: 271 ECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL--NERTLKGTFFGNYKP 328
C G + +++ G+ + G S V T P ++ T G +
Sbjct: 251 NCVGG-KSSTGIARKLNNN-GLMLTYGGMSFQPV--TIPTSLYIFKNFTSAGFWVTELLK 306
Query: 329 RT------DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
L ++ Y +L + + E
Sbjct: 307 NNKELKTSTLNQIIAWYEEGKLTDA--KSIETLYDGTKPLHELY 348
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 66/379 (17%), Positives = 118/379 (31%), Gaps = 75/379 (19%)
Query: 1 MSSTAGLILTCKAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWES 57
MS K + G P L ++ + P + EV +++ + +DL
Sbjct: 1 MSLHG------KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITG 54
Query: 58 K-GQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDL 116
P I G+E G+VE+VG VS +G VLP
Sbjct: 55 AYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP---------------------- 92
Query: 117 LRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCIL 176
G T+ EY + V I +
Sbjct: 93 ---------------------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQM 125
Query: 177 SCGVSTGLGATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
T +R + V A+G A+ ++I R+I V R++K EE
Sbjct: 126 YINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEE 184
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAV 294
+ G ++TS E + E+TNG G D +++ G + + G +
Sbjct: 185 LLRLGAAYVIDTSTAPLY--ETVMELTNGIGADAAIDSIGG-PDGNELAFSLRPN-GHFL 240
Query: 295 LVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTD-------LPSVVDMYMNKQLELE 347
+G+ S I + ++ ++ + N+QL
Sbjct: 241 TIGLLSG-IQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFM 299
Query: 348 KFITHRIPFSEINKAFEYM 366
K + +++ A + +
Sbjct: 300 K-VHSTYELADVKAAVDVV 317
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 68/377 (18%), Positives = 116/377 (30%), Gaps = 93/377 (24%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY-----FWESKGQTPLF 64
KA + G P L + D + ++ IK+ SL D + +K
Sbjct: 8 KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 65 PRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P G++ +G V +G V+++ +GD V G
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNIGDKV-------MGI---------------------- 98
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI--N---------PLAPLDKV 173
++EY + + P A L
Sbjct: 99 ----------------AGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGL--- 139
Query: 174 CILSCGVSTGLGATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKR 232
T L A LN A+ ++G V + G VG A + A+ G +I S +
Sbjct: 140 --------TALQA-LNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRN 188
Query: 233 FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGV 292
K G +N E D + VD ++ G D I + +C+ + G
Sbjct: 189 HAFLKALGAEQCINYHEED------FLLAISTPVDAVIDLVGG-DVGIQSIDCLKET-GC 240
Query: 293 AVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITH 352
V V + + I V ++ + +L + + +L +E I+
Sbjct: 241 IVSVPTITAG-----RVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIE--ISR 293
Query: 353 RIPFSEINKAFEYMVKG 369
SE A E + G
Sbjct: 294 IFQLSEAVTAHELLETG 310
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 76/368 (20%), Positives = 117/368 (31%), Gaps = 74/368 (20%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIF 68
KA A P L+ DVE V + +K +C D + + Q + P +
Sbjct: 23 KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVP 82
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G E AGVV S EG S ++ GD V
Sbjct: 83 GIETAGVVRSAPEG-SGIKPGDRV-------MA--------------------------- 107
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATL 188
F ++E V + P + L T A
Sbjct: 108 ---------------FNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYA 152
Query: 189 NVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247
+ G +V V G G +G AA + A+ GA ++I V + E K G +
Sbjct: 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPL 211
Query: 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFM 306
E + + E T G GVD V+ G A + G ++VG +
Sbjct: 212 EEGWA---KAVREATGGAGVDMVVDPIGG-PAFDDAVRTLASE-GRLLVVGFAAGGIP-- 264
Query: 307 TKPINVLNER--TLKGTFFGNY---KP---RTDLPSVVDMYMNKQLELEKFITHRIPFSE 358
T +N L R +L G +G + + + + ++ RIP SE
Sbjct: 265 TIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLSE 321
Query: 359 INKAFEYM 366
+A +
Sbjct: 322 GRQALQDF 329
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 45/388 (11%), Positives = 98/388 (25%), Gaps = 111/388 (28%)
Query: 12 KAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+ W + + V++ A ++ ++ + + D F ++ +
Sbjct: 3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62
Query: 69 GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLA 128
G + AGV+ VG V +G V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRVA----------------------------------- 87
Query: 129 DGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA---------PLDKVCILSCG 179
+ +G +F+E+TV+++ V + P P
Sbjct: 88 -YHTSLKRHG----------SFAEFTVLNTDRVMTL-PDNLSFERAAALPC--------- 126
Query: 180 VSTGLGA--TLNVAKPERGSSVAVFGLGAVG-----LAAAEGARIAGASRIIGVDRSSKR 232
L A + V + G GAV + G + S +S
Sbjct: 127 --PLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-------ASLS 177
Query: 233 FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGV 292
A K GV + + + + + N + + +
Sbjct: 178 QALAAKRGV-RHLY--REPSQVTQ--------KYFAIFDAVNS-QNAAALVPSLKANGHI 225
Query: 293 AVLVGVPSKD-AVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMN-KQL------ 344
+ T+ I + G D + + L
Sbjct: 226 ICIQDRIPAPIDPAFTRTI------SYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQ 279
Query: 345 -ELEKFITHRIPFSEINKAFEYMVKGEG 371
++E F ++ +A ++ + +
Sbjct: 280 GKMEIAAPDIFRFEQMIEALDHSEQTKL 307
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-15
Identities = 46/355 (12%), Positives = 105/355 (29%), Gaps = 66/355 (18%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK-GQTPLFPRIFGHEAAGVVESVGE 81
L + V P +V IK+ S+ +D+ F + + GQ + R G E G + + G+
Sbjct: 37 LEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGD 96
Query: 82 GV-SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEP 140
+ VG V + G
Sbjct: 97 EPYAKSLVGKRV----------------------------AFATGLSNWG---------- 118
Query: 141 VNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVA 200
+++EY V + + + + T + ++ K E +
Sbjct: 119 --------SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM-FDIVKQEGEKAFV 169
Query: 201 VFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA 259
+ + A+ G R I R ++ K G +N D + +
Sbjct: 170 MTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKAPD--FEATLR 226
Query: 260 EMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNER-T 317
E+ ++ + F + ++ G DA + +P ++ +
Sbjct: 227 EVMKAEQPRIFLDAVTG-PLASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHKH 284
Query: 318 LKGTFFGNYKPRT------DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 366
++G + + + + + + + + +T +P +E A+
Sbjct: 285 IEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTD--VTAVVPLAEA-IAWVPA 336
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 61/370 (16%), Positives = 118/370 (31%), Gaps = 81/370 (21%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESV 79
+ +D V P ++ ++ ++ + +D+ + S G+ + P G E G V ++
Sbjct: 41 TLSRDCPVPLPGDGDLLVRNRFVGVNASDINY--SAGRYDPSVKPPFDIGFEGIGEVVAL 98
Query: 80 GEGVS-DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSING 138
G S VG V
Sbjct: 99 GLSASARYTVGQAVA--------------------------------------------- 113
Query: 139 EPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSS 198
++ +F+EYTVV + + P + + +L G T + + G
Sbjct: 114 -----YMAPGSFAEYTVVPASIATPV-PSVKPEYLTLLVSGT-TAYISLKELGGLSEGKK 166
Query: 199 VAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEV 257
V V G G A + ++ A +IG S ++ K G +N + V
Sbjct: 167 VLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKTEP--VGTV 223
Query: 258 IAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG--------VPSKDAVFMTKP 309
+ + GVD E G A + + G +++G T P
Sbjct: 224 LKQEYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTLP 281
Query: 310 INVLNER-TLKGTFFGNYKPRTD--LPSVVDMYMNKQL------ELEKFITHRIPFSEIN 360
+L + +++G F +Y + + +++M ++ L I
Sbjct: 282 AKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIF 341
Query: 361 KAFEYMVKGE 370
+A YM G+
Sbjct: 342 RAVNYMYMGK 351
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 60/338 (17%), Positives = 108/338 (31%), Gaps = 89/338 (26%)
Query: 12 KAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRI 67
+A +E G P + D+ V P+ +V IK+ + + Y P
Sbjct: 31 RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 90
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
G + AGV+E+VG+ S + GD V
Sbjct: 91 PGSDVAGVIEAVGDNASAFKKGDRV--------------------FTSS----------- 119
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
+ ++EY + V K+ + GA
Sbjct: 120 -----------------TISGGYAEYALAADHTVYKLPE------------KLDFKQGAA 150
Query: 188 L---------NV---AKPERGSSVAVFGLGA--VGLAAAEGARIAGASRIIGVDRSSKRF 233
+ + A + G SV V G + VGLAA + AR G +I+G + +
Sbjct: 151 IGIPYFTAYRALIHSACVKAGESVLVHG-ASGGVGLAACQIARAYGL-KILGTAGTEEGQ 208
Query: 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGV 292
+ + G + N E + + I + G+D +E N N+ + G G
Sbjct: 209 KIVLQNGAHEVFNHREVN--YIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GR 264
Query: 293 AVLVGVPSKDAVFMTKPINVLNER-TLKGTFFGNYKPR 329
++VG + P + + + ++ G +
Sbjct: 265 VIVVGSRGTIEIN---PRDTMAKESSIIGVTLFSSTKE 299
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 9e-14
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
+ G P L + A P E++++ K + D Y P P G
Sbjct: 3 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLG 62
Query: 70 HEAAGVVESVGEGVSDLEVGDHV 92
EAAG+V VG GV ++ GD V
Sbjct: 63 TEAAGIVSKVGSGVKHIKAGDRV 85
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
K G P L D E P V ++ K L D Y+ P P G
Sbjct: 3 KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLG 62
Query: 70 HEAAGVVESVGEGVSDLEVGDHV 92
E AGVVE+VG+ V+ +VGD V
Sbjct: 63 AEGAGVVEAVGDEVTRFKVGDRV 85
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 68/326 (20%), Positives = 104/326 (31%), Gaps = 84/326 (25%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL----FPRI 67
AAV EA P +++ + P +V ++I+ + D G+ P P I
Sbjct: 9 IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKI--RAGEAPHAQQPLPAI 66
Query: 68 FGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
G + AG V +VG V VGD V G GV
Sbjct: 67 LGMDLAGTVVAVGPEVDSFRVGDAV-------FGL-------------------TGGVGG 100
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI-----------NPLAPLDKVCIL 176
G T +++ V + +A PL +
Sbjct: 101 LQG------------------THAQFAAVDARLLASKPAALTMRQASVLPLVFI------ 136
Query: 177 SCGVSTGLGATLNVAKPERGSSVAVFGLGA--VGLAAAEGARIAGASRIIGVDRSSKRFE 234
T ++ A+ + G +V + G G VG A + A GA R+ R S E
Sbjct: 137 -----TAWEGLVDRAQVQDGQTVLIQG-GGGGVGHVAIQIALARGA-RVFATARGSDL-E 188
Query: 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVA 293
+ G T + E + + AE T G G D + G + ++F V V
Sbjct: 189 YVRDLGATPIDASREPE----DYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRFGHVV 243
Query: 294 VLVGVPSKD-AVFMTKPINVLNERTL 318
+G + A K TL
Sbjct: 244 SCLGWGTHKLAPLSFKQATYSGVFTL 269
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIF 68
K + E G + +D V E+ IK KYT + + YF KG P P +
Sbjct: 10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYF--RKGIYPCEKPYVL 67
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV 92
G EA+G V + G+GV++ EVGD V
Sbjct: 68 GREASGTVVAKGKGVTNFEVGDQV 91
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-13
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYF----WESKGQTPLFP 65
AAV + G P + ++V+V P +VR++ + D Y P
Sbjct: 3 MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP-P 61
Query: 66 RIFGHEAAGVVESVGEGVSDLEVGDHV 92
+ G EAA VVE VG GV+D VG+ V
Sbjct: 62 IVVGFEAAAVVEEVGPGVTDFTVGERV 88
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 55/343 (16%), Positives = 104/343 (30%), Gaps = 83/343 (24%)
Query: 12 KAAVAWEAGK-----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPR 66
KA + L+ ++ P ++ +++K S+ D S +
Sbjct: 24 KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
+ G++AAG+V +VG V+ GD V G +
Sbjct: 84 VIGYDAAGIVSAVGPDVTLFRPGDEVF----------------------------YAGSI 115
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI-----------NPLAPLDKVCI 175
+ G T +E+ +V V + PL +
Sbjct: 116 IRPG------------------TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSI----- 152
Query: 176 LSCGVST---GLGATLNVAKPERGSSVAVFGLGA---VGLAAAEGARIAGASRIIGVDRS 229
T L+V KP G++ A+ +G VG A + AR +I
Sbjct: 153 ------TAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASR 206
Query: 230 SKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDG 289
+ E K G ++ H +P+ +A + G T + + +
Sbjct: 207 PETQEWVKSLGAHHVID---HSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ 263
Query: 290 WGVAVLVGVPSKD-AVFMTKPINVLNERTLKGTFFGNYKPRTD 331
++ + D +F K +++ +E FG
Sbjct: 264 GRFCLIDDPSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQ 306
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPR 66
+A V G L + + PQ E++I++K L DL +G P P
Sbjct: 5 RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLM--VRQGNIDNPPKTPL 62
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
+ G E +G+VE++G+ V E+GD V
Sbjct: 63 VPGFECSGIVEALGDSVKGYEIGDRV 88
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 6e-12
Identities = 37/309 (11%), Positives = 75/309 (24%), Gaps = 106/309 (34%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYF---------------------------- 54
L + ++ P EV I+I+ + L +DL
Sbjct: 20 LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79
Query: 55 -WESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNM 113
S G+E AGVV G + + +
Sbjct: 80 AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV-------------------- 119
Query: 114 CDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKV 173
+G + +S+Y + + +
Sbjct: 120 -----------------------------AAIGGAMYSQYRCIPADQCLVLPE------- 143
Query: 174 CILSCGVSTGLGATLNV-----------AKPERGSSVAVFGL-GAVGLAAAEGARIAGAS 221
G + GA+ V + E S++ +G + G
Sbjct: 144 -----GATPADGASSFVNPLTALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI- 197
Query: 222 RIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMI 280
+++ + R ++ + K G N + + + E G + + TG
Sbjct: 198 KLVNIVRKQEQADLLKAQGAVHVCNAASPT--FMQDLTEALVSTGATIAFDATGGGKLGG 255
Query: 281 SAFECVHDG 289
C+
Sbjct: 256 QILTCMEAA 264
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
+ G P ++I + EV ++ + + R D+ + +G P
Sbjct: 30 RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDI--AQRQGSYPPPKDASP 87
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHV 92
I G E +G + VG GVS VGD V
Sbjct: 88 ILGLELSGEIVGVGPGVSGYAVGDKV 113
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 66/395 (16%), Positives = 114/395 (28%), Gaps = 108/395 (27%)
Query: 12 KAAVAWEAGK-----PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPR 66
KA + K ++++ P+ E+ +KI+ S+ D + PR
Sbjct: 4 KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD--TKQRLMDVSKAPR 61
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
+ G +A GVVESVG V+ GD V G
Sbjct: 62 VLGFDAIGVVESVGNEVTMFNQGDIVY----------------------------YSGSP 93
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI--N---------PLAPLDKVCI 175
+G + +EY +++ VAK N PL +
Sbjct: 94 DQNG------------------SNAEYQLINERLVAKAPKNISAEQAVSLPLTGI----- 130
Query: 176 LSCGVST---GLGATLNVAKPER---GSSVAVFGLGA--VG-----LAAAEGAR-IAGAS 221
T L +++ G ++ + GA VG +A A G R I AS
Sbjct: 131 ------TAYETLFDVFGISRNRNENEGKTLLIIN-GAGGVGSIATQIAKAYGLRVITTAS 183
Query: 222 RIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMIS 281
R ++ E KK G +N H + VD
Sbjct: 184 R-------NETIEWTKKMGADIVLN---HKESLLNQFKTQGIELVDYVFCTFNTDMYYDD 233
Query: 282 AFECVHDGWGVAVLVGVPSKDAV--FMTKPINVLNERTLKGTFFGNYKPRTD---LPSVV 336
+ V +A +V + + K ++ +E L +
Sbjct: 234 MIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDIT 293
Query: 337 DMYMNKQLE--LEKFITHRIPFSEINKAFEYMVKG 369
+ + K + + I +A + +
Sbjct: 294 NKVEQNIYQPTTTK-VIEGLTTENIYQAHQILESN 327
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 65/406 (16%), Positives = 106/406 (26%), Gaps = 112/406 (27%)
Query: 12 KAAVAWEAGKP---LIIQDVEV-APPQAMEVRIKIKYTSLCRTDLY-------------- 53
A V + GK Q++ + EV +K+ S+ D+
Sbjct: 23 MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 54 -FWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSN 112
K + FP G + +GVV G V + GD V
Sbjct: 83 DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVW------------------- 123
Query: 113 MCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI--N----- 165
G T SE+ VV V+ +
Sbjct: 124 -----------------AAVPPWKQG----------TLSEFVVVSGNEVSHKPKSLTHTQ 156
Query: 166 ----PLAPLDKVCILSCGVSTGLGATLNVAK----PERGSSVAVFG-LGAVGLAAAEGAR 216
P L T A V G V + G G VG A + +
Sbjct: 157 AASLPYVAL-----------TAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMK 205
Query: 217 IAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276
A + V S E +K G D ++ ++E + + D ++ G
Sbjct: 206 AWDA-HVTAVC-SQDASELVRKLGADDVIDYKSGS--VEEQLKSL--KPFDFILDNVGG- 258
Query: 277 DNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVV 336
A + + G + V I +T K
Sbjct: 259 STETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYR 318
Query: 337 DMYMN---KQLE-----LEK-----FITHRIPFSEINKAFEYMVKG 369
+ L+ ++ I PFS++ +AF + +G
Sbjct: 319 WAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERG 364
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 49/250 (19%), Positives = 73/250 (29%), Gaps = 66/250 (26%)
Query: 23 LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82
L+ + AP EVRI ++ + D + G P G E AGVV G G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALI--ALGMYPG-VASLGSEGAGVVVETGPG 282
Query: 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVN 142
V+ L GD V+ +
Sbjct: 283 VTGLAPGDRVMGMIPK-------------------------------------------- 298
Query: 143 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAV- 201
F V V +I + + T A +++A G S+ V
Sbjct: 299 ------AFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVH 352
Query: 202 FGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD---FVNTSEHDRPIQEVI 258
G VG+AA + AR GA + K + ++ S ++
Sbjct: 353 SAAGGVGMAAIQLARHLGA-EVYATASEDKW----QAVELSREHLA---SSRTCDFEQQF 404
Query: 259 AEMTNG-GVD 267
T G GVD
Sbjct: 405 LGATGGRGVD 414
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 57/276 (20%), Positives = 88/276 (31%), Gaps = 86/276 (31%)
Query: 12 KAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPR 66
A + G P L +++V P EV +K+ ++L R DL + +GQ
Sbjct: 24 LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADL--MQRQGQYDPPPGASN 81
Query: 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVM 126
I G EA+G V +G G
Sbjct: 82 ILGLEASGHVAELGPGC------------------------------------------- 98
Query: 127 LADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVS----- 181
Q + I G+ L ++Y V G + I G++
Sbjct: 99 ----QGHWKI-GDTAMALLPGGGQAQYVTVPEGLLMPIPE------------GLTLTQAA 141
Query: 182 ----TGLGATLNV---AKPERGSSVAVFGLGA--VGLAAAEGARIAGASRIIGVDRSSKR 232
L A + + G V + G VG AA + R+AGA + S K+
Sbjct: 142 AIPEAWLTAFQLLHLVGNVQAGDYVLIHA-GLSGVGTAAIQLTRMAGA-IPLVTAGSQKK 199
Query: 233 FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVD 267
+ A+K G N + D E + T G GV+
Sbjct: 200 LQMAEKLGAAAGFNYKKED--FSEATLKFTKGAGVN 233
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 44/259 (16%), Positives = 67/259 (25%), Gaps = 72/259 (27%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL-FPRIFGH 70
KA V G PL + D+ + EV ++++ L D T L P I G
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
E GVV G
Sbjct: 62 EVVGVV-----------EGRRY-------AA----------------------------- 74
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
+ +E V G + + ++ T A L
Sbjct: 75 -------------LVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLA-LKR 120
Query: 191 AKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249
A+ G V V GA+G AA + AR G R++ ++ G + +E
Sbjct: 121 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAE 179
Query: 250 HDRPIQEVIAEMTNG-GVD 267
G+D
Sbjct: 180 VPE-------RAKAWGGLD 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 59/390 (15%), Positives = 111/390 (28%), Gaps = 101/390 (25%)
Query: 27 DVEVAPPQAMEV-RIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESV--GEGV 83
D +V V R++ Y L R L E + + G ++ +
Sbjct: 122 DNQVFAK--YNVSRLQ-PYLKL-RQALL--ELRPA----KNVLIDGVLGSGKTWVALDVC 171
Query: 84 SDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVN 142
+V + +F +C + + + LL +D S + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 143 HFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI--------LSCGVSTGLGATLNVAKPE 194
L + L L V LSC + L T
Sbjct: 232 AEL-RRLLKSKPYENC--------LLVLLNVQNAKAWNAFNLSCKI---LLTT------- 272
Query: 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TDFVNTSEHDRP 253
R V F L+AA I+ +D S + + +++ D P
Sbjct: 273 RFKQVTDF------LSAATTTHIS-------LDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 254 IQE---------VIAEMTNGGVDRS-----VECTGNIDNMISAF----------ECVHDG 289
+ +IAE G+ V C + +I + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDR- 377
Query: 290 WGVAVL---VGVPSKDAVFM--------TKPINVLNERTLKGTFFGNYKPRTDLPSVVDM 338
++V +P+ + + + V+N+ K T S+ +
Sbjct: 378 --LSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSI 431
Query: 339 YMNKQLELEKFIT-HR--IPFSEINKAFEY 365
Y+ +++LE HR + I K F+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDS 461
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 100.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 100.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 100.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 100.0 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 100.0 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 100.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 100.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 100.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 100.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 100.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 100.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 100.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 100.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 100.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 100.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 100.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 100.0 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 100.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 100.0 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 100.0 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 100.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 100.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 100.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 100.0 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 100.0 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 100.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 100.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 100.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 100.0 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 100.0 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 100.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 100.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 100.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 100.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 100.0 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 100.0 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 100.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 100.0 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 100.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 100.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 100.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 100.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 100.0 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 100.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 100.0 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 100.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 100.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 100.0 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 100.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 100.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 100.0 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 100.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 100.0 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 100.0 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 100.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 100.0 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 100.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 100.0 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 100.0 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 100.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 100.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 100.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 100.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 100.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 100.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 99.88 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.17 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.95 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.68 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.66 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.46 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.46 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.45 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.32 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.12 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.01 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.01 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.98 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.97 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.95 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.86 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.78 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.75 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.67 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.66 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.61 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.59 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.57 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.56 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.52 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.52 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.45 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.29 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.29 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.2 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.15 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.14 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.08 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.07 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 97.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 96.97 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.96 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.96 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.95 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 96.94 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.93 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.93 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 96.92 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.89 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 96.88 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.85 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.85 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 96.84 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.84 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 96.82 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.81 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 96.79 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.79 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 96.79 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 96.77 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.76 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.72 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.71 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.69 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 96.67 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.66 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.65 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 96.64 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.63 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.62 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.62 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.6 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.6 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.6 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.58 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.58 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 96.58 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.57 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.55 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 96.54 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.54 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 96.54 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 96.54 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.53 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 96.53 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.53 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.53 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.53 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 96.53 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 96.52 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.52 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.52 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.52 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.5 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 96.5 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 96.5 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 96.49 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.49 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.49 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.49 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.48 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.47 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 96.46 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 96.45 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 96.4 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 96.4 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.4 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.4 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.39 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 96.39 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.38 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.38 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.37 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.37 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.36 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.36 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.36 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 96.36 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.35 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.34 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.34 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 96.33 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.32 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 96.3 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 96.3 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.29 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 96.29 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.28 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.28 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 96.26 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.26 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.26 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.26 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 96.25 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.25 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 96.25 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.25 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 96.23 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.23 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.23 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.2 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 96.2 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.19 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.19 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.18 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 96.18 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.18 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 96.18 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.18 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.17 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 96.17 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.17 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.17 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.17 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.17 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.16 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 96.16 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.15 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 96.15 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.14 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.14 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 96.13 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.12 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.12 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 96.11 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.11 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.1 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.1 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 96.1 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.1 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.1 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.09 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.09 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 96.09 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.08 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.08 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.08 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.08 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.06 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.06 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.06 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.05 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.05 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.04 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 96.04 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.03 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.03 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.03 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.02 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.02 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 96.01 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.99 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 95.99 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 95.98 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.98 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 95.98 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 95.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.97 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 95.96 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.96 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.96 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.95 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 95.94 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.93 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.93 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 95.93 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.91 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.9 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.9 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 95.9 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.9 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.9 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 95.89 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 95.89 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.88 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 95.88 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.88 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 95.87 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 95.87 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 95.87 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.86 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.86 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 95.86 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 95.85 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 95.85 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 95.85 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.84 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 95.84 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.83 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 95.83 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.82 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 95.82 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 95.82 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 95.81 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.81 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 95.8 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.8 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.79 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 95.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 95.78 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 95.78 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.77 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 95.77 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 95.76 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 95.76 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.75 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 95.75 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.73 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.73 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 95.72 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.72 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 95.71 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 95.7 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.69 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 95.69 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.69 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.68 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 95.68 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.68 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 95.68 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.67 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 95.67 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 95.66 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.65 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.65 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.64 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 95.62 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.61 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 95.61 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 95.61 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 95.6 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 95.58 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.58 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 95.57 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.56 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 95.56 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.55 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.55 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.55 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 95.54 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.54 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.53 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 95.5 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.49 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 95.49 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 95.48 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.48 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.46 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 95.45 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 95.44 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 95.43 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 95.43 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.43 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 95.43 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 95.42 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 95.42 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.41 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 95.4 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.4 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.4 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 95.39 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.38 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.35 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.35 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.32 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.32 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 95.31 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.31 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 95.3 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 95.29 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.27 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 95.27 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 95.25 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.24 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 95.22 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.21 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 95.21 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.19 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 95.18 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 95.17 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 95.16 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 95.16 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 95.15 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 95.15 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 95.14 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.14 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.13 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.13 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.12 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.11 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 95.1 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 95.09 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 95.07 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 95.06 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.05 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 95.04 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.03 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.03 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 95.02 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.01 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 95.01 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.01 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 95.0 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 94.99 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 94.99 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 94.99 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 94.98 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.98 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 94.98 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 94.96 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 94.95 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 94.93 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 94.92 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 94.9 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.88 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.85 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.84 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 94.84 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 94.83 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 94.82 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 94.78 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 94.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 94.74 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 94.7 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 94.7 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.69 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 94.68 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.68 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.66 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 94.66 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 94.66 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 94.65 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 94.64 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 94.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 94.63 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 94.59 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 94.59 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.58 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.58 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 94.58 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.56 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 94.55 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 94.52 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 94.52 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 94.5 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 94.49 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.49 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 94.47 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 94.47 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.45 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 94.45 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.44 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 94.43 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.43 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 94.43 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.41 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 94.4 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.4 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 94.39 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 94.38 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 94.37 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 94.35 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 94.34 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 94.34 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 94.33 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 94.31 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.31 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 94.3 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 94.3 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 94.29 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 94.28 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 94.26 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.26 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 94.23 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 94.22 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 94.22 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 94.2 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 94.2 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 94.18 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 94.15 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 94.14 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 94.12 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 94.11 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.08 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.07 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 94.07 |
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-66 Score=491.29 Aligned_cols=376 Identities=56% Similarity=1.022 Sum_probs=335.4
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
..+|+||||+++.+++++++++++++|+|+++||||||+++|||++|++++.|..+...+|.++|||++|+|+++|++++
T Consensus 3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~ 82 (378)
T 3uko_A 3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 82 (378)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence 35678999999999998899999999999999999999999999999999998877678899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
+|++||||++.+..+|+.|.+|++|++++|.+.......|....+|..++..+|....+..+.|+|+||+.++++.++++
T Consensus 83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i 162 (378)
T 3uko_A 83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI 162 (378)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence 99999999999999999999999999999998765333355556666677777776667777899999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
|+++++++||.+++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|++++
T Consensus 163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v 242 (378)
T 3uko_A 163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEF 242 (378)
T ss_dssp CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEE
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEE
Confidence 99999999999999999999998888999999999999999999999999999999889999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeec
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFG 324 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~ 324 (380)
+++.+.+.++.+.+++++++++|++||++|++..+..+++++++++|+++.+|.......+.+....+.+++++.|+.++
T Consensus 243 i~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~ 322 (378)
T 3uko_A 243 VNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFG 322 (378)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred EccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhcCcEEEEEEec
Confidence 99874334589999999888999999999998899999999999229999999876455555555555568899998766
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecCC
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 380 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~~ 380 (380)
.+...+++.++++++.++++++.+++++.|+|+++++||+.+.+++..|+||++++
T Consensus 323 ~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~ 378 (378)
T 3uko_A 323 GFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK 378 (378)
T ss_dssp GCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred CCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence 55455679999999999999988899999999999999999998888899999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-62 Score=462.83 Aligned_cols=371 Identities=45% Similarity=0.806 Sum_probs=309.5
Q ss_pred CCCccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeC
Q 016933 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG 80 (380)
|++ .+.|++|||+++.++++++++++++.|+|+++||||||.++|||++|++++.|..+ ..+|.++|||++|+|+++|
T Consensus 1 ~~~-~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG 78 (373)
T 1p0f_A 1 MCT-AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIG 78 (373)
T ss_dssp -CC-TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEEC
T ss_pred Ccc-cCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEEC
Confidence 775 56799999999999887799999999999999999999999999999999988655 5679999999999999999
Q ss_pred CCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccc
Q 016933 81 EGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC 160 (380)
Q Consensus 81 ~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~ 160 (380)
++|++|++||||++.+..+||.|.+|++|++++|.+....-..|+. .+|...+..+|....+....|+|+||++++++.
T Consensus 79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~ 157 (373)
T 1p0f_A 79 AGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIA 157 (373)
T ss_dssp TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTS
T ss_pred CCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchhh
Confidence 9999999999999999999999999999999999876431000211 111111111111111122347999999999999
Q ss_pred eEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC
Q 016933 161 VAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 161 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG 240 (380)
++++|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|
T Consensus 158 ~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 236 (373)
T 1p0f_A 158 VAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG 236 (373)
T ss_dssp EEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT
T ss_pred EEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC
Confidence 99999999999 99999999999999878899999999999999999999999999999978999999999999999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCC-cEEEEEcCCCCCceeecccccc-ccccEE
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-GVAVLVGVPSKDAVFMTKPINV-LNERTL 318 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i 318 (380)
+++++++++.+.++.+.+++++++++|+|||++|.+..+..+++++++ + |+++.+|.........++...+ .++ ++
T Consensus 237 a~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i 314 (373)
T 1p0f_A 237 ATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDPLLLLTGR-SL 314 (373)
T ss_dssp CSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECTHHHHTTC-EE
T ss_pred CcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCHHHhccCc-eE
Confidence 999998875323488889888877999999999987889999999999 7 9999999865333344444333 356 89
Q ss_pred EeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.|+.++.+.. +++++++++++++++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus 315 ~g~~~~~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 1p0f_A 315 KGSVFGGFKG-EEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY 373 (373)
T ss_dssp EECSGGGCCG-GGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred EeeccCCcCH-HHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence 8886543322 5799999999999998878899999999999999999888778999875
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-62 Score=459.50 Aligned_cols=371 Identities=48% Similarity=0.869 Sum_probs=309.6
Q ss_pred ccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
+.+.|++|||+++.++++++++++++.|+|+++||||||.++|||++|++++.|..+.. +|.++|||++|+|+++|++|
T Consensus 2 ~~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v 80 (374)
T 2jhf_A 2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGV 80 (374)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTC
T ss_pred CCCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCC
Confidence 34668999999999998779999999999999999999999999999999998865433 79999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
++|++||||++.+..+|+.|.+|++|++++|.+......+|+. .+|...+..+|....++...|+|+||++++++.+++
T Consensus 81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 159 (374)
T 2jhf_A 81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK 159 (374)
T ss_dssp CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred CCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEE
Confidence 9999999999999999999999999999999976432101221 111111111111111122347999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++
T Consensus 160 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~ 239 (374)
T 2jhf_A 160 IDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239 (374)
T ss_dssp CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred CCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCce
Confidence 99999999999999999999999878899999999999999999999999999999978999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCC-cEEEEEcCCCCCceeecccccc-ccccEEEee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-GVAVLVGVPSKDAVFMTKPINV-LNERTLKGT 321 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~ 321 (380)
++++++.+.++.+.+++++++++|++||++|.+..+..+++++++ + |+++.+|.........++...+ .++ ++.|+
T Consensus 240 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~ 317 (374)
T 2jhf_A 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGA 317 (374)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEEC
T ss_pred EecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHHHHhcCC-eEEEe
Confidence 998875223388888888877999999999987889999999999 7 9999999765333334443333 366 89888
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.++.+...+++++++++++++++++.+++++.|+|+++++||+.+.+++..|++|++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 374 (374)
T 2jhf_A 318 IFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence 654433345689999999999998878899999999999999999988878999875
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=460.51 Aligned_cols=369 Identities=51% Similarity=0.914 Sum_probs=309.2
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
.||+|||+++.+++++++++++++|+|+++||||||.++|||++|++++.|..+...+|.++|||++|+|+++|++|++|
T Consensus 3 ~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~ 82 (373)
T 2fzw_A 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL 82 (373)
T ss_dssp CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred CccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 57899999999988779999999999999999999999999999999998866555789999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+||.|.+|++|++++|.+......+|+. .+|...+..+|....++...|+|+||++++++.++++|+
T Consensus 83 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~ 161 (373)
T 2fzw_A 83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP 161 (373)
T ss_dssp CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred CCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECCC
Confidence 9999999999999999999999999999875321000111 111111111222222223357999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++++
T Consensus 162 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~ 241 (373)
T 2fzw_A 162 LAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 241 (373)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred CCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence 99999999999999999999878899999999999999999999999999999978999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCC-cEEEEEcCCCCCceeecccccc-ccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-GVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~ 324 (380)
+++.+.++.+.+++++++++|++||++|....+..+++++++ + |+++.+|.........+....+ .++ ++.|+.++
T Consensus 242 ~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~ 319 (373)
T 2fzw_A 242 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFG 319 (373)
T ss_dssp GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGG
T ss_pred cccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccC
Confidence 875223488888888877999999999987889999999999 7 9999999865333334443333 366 89888654
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.+...+++++++++++++++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus 320 ~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 2fzw_A 320 GWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373 (373)
T ss_dssp GCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence 333345689999999999998888899999999999999999988878999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=458.64 Aligned_cols=368 Identities=43% Similarity=0.822 Sum_probs=306.8
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
-+.|++|||+++.+++++++++++++|+|+++||||||++++||++|++++.|. +...+|.++|||++|+|+++|++|+
T Consensus 3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~ 81 (376)
T 1e3i_A 3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT 81 (376)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence 467899999999998877999999999999999999999999999999998886 4456899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccC----CCCcccccCCCcccccCCCccccccCCcceeeEEEEeccc
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRIN----PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC 160 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~ 160 (380)
+|++||||++.+..+||.|.+|++|++++|.+.... ...|+. .+|...+..+|....++...|+|+||++++++.
T Consensus 82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~ 160 (376)
T 1e3i_A 82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEAN 160 (376)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEecccc
Confidence 999999999999999999999999999999875410 000211 111111111111111112347999999999999
Q ss_pred eEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC
Q 016933 161 VAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 161 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG 240 (380)
++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|
T Consensus 161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 240 (376)
T 1e3i_A 161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 240 (376)
T ss_dssp EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence 99999999999999999999999999888899999999999999999999999999999978999999999999999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCC-cEEEEEcCCCCCceeecccccc-ccccEE
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-GVAVLVGVPSKDAVFMTKPINV-LNERTL 318 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i 318 (380)
+++++++++.+.++.+.+++++++++|+|||++|.+..+..+++++++ + |+++++|... ....++...+ .++ ++
T Consensus 241 a~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~~--~~~~~~~~~~~~~~-~i 316 (376)
T 1e3i_A 241 ATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAKV--DEMTIPTVDVILGR-SI 316 (376)
T ss_dssp CSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCSS--SEEEEEHHHHHTTC-EE
T ss_pred CcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCCC--CccccCHHHhhccC-eE
Confidence 999998875223488888888877999999999987889999999999 6 9999999842 2333333333 366 89
Q ss_pred EeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.|+.++.+...+++++++++++++++++.+++++.|+|+++++||+.+++++.+|++|++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 376 (376)
T 1e3i_A 317 NGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF 376 (376)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence 887654333345689999999999998888899999999999999999988878999875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=458.01 Aligned_cols=369 Identities=50% Similarity=0.882 Sum_probs=308.8
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccch-hhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY-FWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~-~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
-..|++|||+++.++++++++++++.|+|+++||||||.++|||++|++ ++.|..+ ..+|.++|||++|+|+++|++|
T Consensus 3 ~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~V 81 (374)
T 1cdo_A 3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGV 81 (374)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTC
T ss_pred CCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCCC
Confidence 3578899999999988789999999999999999999999999999999 8887654 5679999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
++|++||||++.+..+||.|.+|++|++++|++......+|+. .+|...+..+|....+....|+|+||+++|++.+++
T Consensus 82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 160 (374)
T 1cdo_A 82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK 160 (374)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred ccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheEE
Confidence 9999999999999999999999999999999876432111221 111111111121111122347999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++
T Consensus 161 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~ 240 (374)
T 1cdo_A 161 IDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240 (374)
T ss_dssp CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCce
Confidence 99999999999999999999999878899999999999999999999999999999978999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCC-cEEEEEcCCCCCceeecccccc-ccccEEEee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGW-GVAVLVGVPSKDAVFMTKPINV-LNERTLKGT 321 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~ 321 (380)
++++++.+.++.+.+++.+++++|++||++|....+..+++++++ + |+++.+|.... ....++...+ .++ ++.|+
T Consensus 241 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~~~~~~~~~~~~-~i~g~ 317 (374)
T 1cdo_A 241 FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDVATRPIQLIAGR-TWKGS 317 (374)
T ss_dssp EECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCEEECHHHHHTTC-EEEEC
T ss_pred EEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCcccCHHHHhcCC-eEEEE
Confidence 998875223488888888877999999999987889999999999 7 99999998653 2333333333 366 89888
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.++.+...+++++++++++++++++.+++++.|+|+++++||+.+++++..|++|++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 374 (374)
T 1cdo_A 318 MFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence 654333345689999999999998878899999999999999999988878999875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-62 Score=459.69 Aligned_cols=368 Identities=31% Similarity=0.525 Sum_probs=304.9
Q ss_pred CCCccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeC
Q 016933 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG 80 (380)
||. +++|||+++.++++++++++++.|+|+++||||||.++|||++|++++.|..+ ..+|.++|||++|+|+++|
T Consensus 1 ms~----~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG 75 (371)
T 1f8f_A 1 MSE----LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIG 75 (371)
T ss_dssp -------CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEEC
T ss_pred CCc----cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeC
Confidence 666 67899999999887799999999999999999999999999999999988654 4579999999999999999
Q ss_pred CCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccc-cCCCcc-ccccCCcceeeEEEEec
Q 016933 81 EGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFS-INGEPV-NHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 81 ~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~-~~g~~~-~~~~~~G~~a~~~~v~~ 158 (380)
+++++|++||||++.+ .+||.|.+|++|++++|.+.......|.. .+|..++. .+|... .+....|+|+||+++++
T Consensus 76 ~~v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~ 153 (371)
T 1f8f_A 76 PNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRE 153 (371)
T ss_dssp TTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEG
T ss_pred CCCCCCCCCCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEech
Confidence 9999999999999999 99999999999999999876421000100 11111110 011000 00122479999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|++++++
T Consensus 154 ~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 154 NNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp GGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred hheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999998788999999999999999999999999999999779999999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccE
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERT 317 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~ 317 (380)
+|+++++++++.+ +.+.+++.+++++|+|||++|.+..+..++++++++ |+++.+|.........++... +.++++
T Consensus 234 lGa~~vi~~~~~~--~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~ 310 (371)
T 1f8f_A 234 LGATHVINSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKT 310 (371)
T ss_dssp HTCSEEEETTTSC--HHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCE
T ss_pred cCCCEEecCCccC--HHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCE
Confidence 9999999987765 888888888779999999999878899999999997 999999986533233333333 348999
Q ss_pred EEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 318 LKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 318 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
+.|+..+.+...+++++++++++++++++.+++++ |+|+++++||+.+++++.+|+||++.
T Consensus 311 i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~ 371 (371)
T 1f8f_A 311 ILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA 371 (371)
T ss_dssp EEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred EEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence 99987554323356899999999999988778888 99999999999999887789999863
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=449.14 Aligned_cols=341 Identities=24% Similarity=0.395 Sum_probs=301.2
Q ss_pred chhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC
Q 016933 6 GLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
.+|++|||+++.+++. +++++++.|+|++|||||||.+++||++|+.++.|.. ...+|.++|||++|+|+++|+++++
T Consensus 19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~-~~~~p~v~G~e~~G~V~~vG~~v~~ 96 (370)
T 4ej6_A 19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEF-PSTPPVTLGHEFCGIVVEAGSAVRD 96 (370)
T ss_dssp --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSS-CCCSSEECCCSEEEEEEEECTTCCS
T ss_pred ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCC-CCCCCeecCcceEEEEEEECCCCCC
Confidence 4677899999998875 9999999999999999999999999999999998865 3567999999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++.+..+|+.|.+|++|++++|.+.... |+. ..|+|+||++++.+.++++|
T Consensus 97 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~~P 154 (370)
T 4ej6_A 97 IAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAI---GIH-------------------RDGGFAEYVLVPRKQAFEIP 154 (370)
T ss_dssp SCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEEGGGEEEEC
T ss_pred CCCCCEEEECCCCCCCCChHHhCcCcccCCCcccc---CCC-------------------CCCcceEEEEEchhhEEECC
Confidence 99999999999999999999999999999987654 432 23699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++++|| +..++++||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|.++++++|+++++
T Consensus 155 ~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi 232 (370)
T 4ej6_A 155 LTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV 232 (370)
T ss_dssp TTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE
Confidence 999999998 667999999996 789999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCCCccHHHHHHH---HhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEee
Q 016933 246 NTSEHDRPIQEVIAE---MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGT 321 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~---~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~ 321 (380)
++++.+ +.+.+++ ++++++|+|||++|....+..++++++++ |+++.+|.........++...+ .+++++.|+
T Consensus 233 ~~~~~~--~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~ 309 (370)
T 4ej6_A 233 DPSAGD--VVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGS 309 (370)
T ss_dssp CTTSSC--HHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEEC
T ss_pred CCCCcC--HHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEe
Confidence 988766 8888887 67679999999999878999999999997 9999999876433444444433 489999998
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc--eeEEEecC
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG--LRCIISME 379 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~--~Kvvi~~~ 379 (380)
..+. .+++++++++++|++++.+++++.|+|+++++||+.+.+++. +|++++++
T Consensus 310 ~~~~----~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~ 365 (370)
T 4ej6_A 310 FINP----FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAE 365 (370)
T ss_dssp CSCT----TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred ccCh----HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence 6432 469999999999999988899999999999999999988764 58888775
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=441.48 Aligned_cols=346 Identities=23% Similarity=0.320 Sum_probs=295.4
Q ss_pred CCCccchhhhhhhhhhccCCCCeEEEEeecC--------CCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCcccc
Q 016933 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVA--------PPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFG 69 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p--------~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G 69 (380)
|++ +++++|||+++..++. +++++++.| +|++|||||||.++|||++|+.++.+.. ....+|.++|
T Consensus 1 m~~--~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G 77 (363)
T 3m6i_A 1 MAS--SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLG 77 (363)
T ss_dssp ------CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECC
T ss_pred CCC--CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccC
Confidence 554 4678899999987765 999999999 9999999999999999999999887432 2246799999
Q ss_pred ccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcc
Q 016933 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTST 149 (380)
Q Consensus 70 ~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~ 149 (380)
||++|+|+++|+++++|++||||++.+..+|+.|.+|++|.++.|.+..+. |... ..|+
T Consensus 78 ~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~---g~~~------------------~~G~ 136 (363)
T 3m6i_A 78 HESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFL---STPP------------------VPGL 136 (363)
T ss_dssp CEEEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEET---TSTT------------------SCCS
T ss_pred cceEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCcccc---CCCC------------------CCcc
Confidence 999999999999999999999999999999999999999999999987765 3221 1369
Q ss_pred eeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 150 FSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 150 ~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+||++++.+.++++|+ +++++||.+. +++|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++|++++++
T Consensus 137 ~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~ 213 (363)
T 3m6i_A 137 LRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDID 213 (363)
T ss_dssp CBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred ceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999999999 9999999884 789999996 78999999999999999999999999999999559999999
Q ss_pred hhHHHHHHhcCCceEecCCC---CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCcee
Q 016933 230 SKRFEEAKKFGVTDFVNTSE---HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVF 305 (380)
Q Consensus 230 ~~~~~~~~~lG~~~vi~~~~---~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~ 305 (380)
++|+++++++ ++.++++.. .+.++.+.+++++++ ++|++||++|++..+..++++++++ |+++.+|.......+
T Consensus 214 ~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~ 291 (363)
T 3m6i_A 214 EGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKNEIQI 291 (363)
T ss_dssp HHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCSCCCC
T ss_pred HHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCCCccc
Confidence 9999999999 766665532 224588899999877 9999999999977899999999997 999999986543332
Q ss_pred eccccccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcC-Cc-eeEEEecCC
Q 016933 306 MTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKG-EG-LRCIISMED 380 (380)
Q Consensus 306 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~-~~-~Kvvi~~~~ 380 (380)
+.. ..+.+++++.++..+ .++++++++++++|++++.+++++.|+|+++++||+.++++ .. +|++|+.+|
T Consensus 292 ~~~-~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 363 (363)
T 3m6i_A 292 PFM-RASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363 (363)
T ss_dssp CHH-HHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred cHH-HHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 222 223488999987643 56899999999999998888899999999999999999987 33 699999864
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=435.07 Aligned_cols=335 Identities=27% Similarity=0.459 Sum_probs=296.9
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
+|||+++.++++++++++++.|+|++|||||||.++|||++|+.++.|..+. ..+|.++|||++|+|+++|+++++|++
T Consensus 2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v 81 (340)
T 3s2e_A 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE 81 (340)
T ss_dssp EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence 4999999998888999999999999999999999999999999999987654 568999999999999999999999999
Q ss_pred CCEE-EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 89 GDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 89 GdrV-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
|||| +..+..+|+.|.+|++|++++|.+.... |+. ..|+|+||+.++++.++++|++
T Consensus 82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~~ 139 (340)
T 3s2e_A 82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT---GYS-------------------VNGGYGEYVVADPNYVGLLPDK 139 (340)
T ss_dssp TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEECTTTSEECCTT
T ss_pred CCEEEecCCCCCCCCChHHhCcCcccCcccccc---CCC-------------------CCCcceeEEEechHHEEECCCC
Confidence 9999 5677889999999999999999987654 432 2369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 99999999999999999996 67899999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~ 326 (380)
++.+ +.+.+++ +.+++|++||++|+.+.+..++++++++ |+++.+|..... ....... +.+++++.|+..+.
T Consensus 218 ~~~~--~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~i~g~~~~~- 290 (340)
T 3s2e_A 218 RDTD--PAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGD--FGTPIFDVVLKGITIRGSIVGT- 290 (340)
T ss_dssp TTSC--HHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSSE--EEEEHHHHHHTTCEEEECCSCC-
T ss_pred CCcC--HHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCCC--CCCCHHHHHhCCeEEEEEecCC-
Confidence 8765 7888887 4458999999999888999999999997 999999987533 3333332 34899999986442
Q ss_pred CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 327 KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
.+++++++++++++++++. .+.|+|+++++||+.+++++. +|+||++++
T Consensus 291 --~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~ 340 (340)
T 3s2e_A 291 --RSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR 340 (340)
T ss_dssp --HHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred --HHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 3569999999999988753 578899999999999999887 699999875
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=433.74 Aligned_cols=339 Identities=24% Similarity=0.363 Sum_probs=296.4
Q ss_pred hhhhhhccCCCCeEEEEeecCC-CCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAP-PQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.++|. ++++++|+|+ +++|||||||.++|||++|++.+.+..+ ..+|+++|||++|+|+++|++|++|++|
T Consensus 1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~G 78 (346)
T 4a2c_A 1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPG 78 (346)
T ss_dssp CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCC
Confidence 89999988886 9999999998 5799999999999999999998887554 4689999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||++.+...|+.|.+|+.|.+++|.+.... |.. ..|+|+||+++|++.++++|++++
T Consensus 79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~~l~ 136 (346)
T 4a2c_A 79 DAVACVPLLPCFTCPECLKGFYSQCAKYDFI---GSR-------------------RDGGFAEYIVVKRKNVFALPTDMP 136 (346)
T ss_dssp CEEEECCEECCSCSHHHHTTCGGGCSSCEEB---TTT-------------------BCCSSBSEEEEEGGGEEECCTTSC
T ss_pred CeEEeeeccCCCCcccccCCccccCCCcccc---cCC-------------------CCcccccccccchheEEECCCCCC
Confidence 9999999999999999999999999987665 332 246999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++||.++ .+.+++++ .+..++++|++|||+|+|++|++++|+||.+|+..+++++++++|+++++++|+++++|+++
T Consensus 137 ~~~aa~l~-~~~~~~~~-~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 137 IEDGAFIE-PITVGLHA-FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp GGGGGGHH-HHHHHHHH-HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhch-HHHHHHHH-HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence 99999876 44555554 67899999999999999999999999999999978899999999999999999999999988
Q ss_pred CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc--ccccccEEEeeeecCC
Q 016933 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI--NVLNERTLKGTFFGNY 326 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~~i~g~~~~~~ 326 (380)
.+ +.+.++.++++ ++|+++|++|.+..++.++++++++ |+++++|............. .+.+++++.|++....
T Consensus 215 ~~--~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~ 291 (346)
T 4a2c_A 215 MS--APQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYS 291 (346)
T ss_dssp SC--HHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCC
T ss_pred CC--HHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEecccc
Confidence 76 77778888777 8999999999988999999999997 99999998765444332222 2448999999875432
Q ss_pred C--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 327 K--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 327 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. ..+++++++++++++++++.++++++|+|+++++||+.+++++. +|+||.+
T Consensus 292 ~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 292 SPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp SSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred CcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 2 23468999999999999999999999999999999999998877 6999864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=432.91 Aligned_cols=340 Identities=23% Similarity=0.378 Sum_probs=293.4
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-C--CCCCCccccccccEEEEEeCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-Q--TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-~--~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|+|||+++.+++. +++++++.|+|+++||||||.++|||++|+.++.+.. . ...+|.++|||++|+|+++|++|++
T Consensus 6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~ 84 (356)
T 1pl8_A 6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH 84 (356)
T ss_dssp CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence 5799999988764 9999999999999999999999999999999887432 1 1357999999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++.+..+|+.|.+|++|++++|.+..+. |... ..|+|+||+.+|.+.++++|
T Consensus 85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~------------------~~G~~aey~~v~~~~~~~iP 143 (356)
T 1pl8_A 85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC---ATPP------------------DDGNLCRFYKHNAAFCYKLP 143 (356)
T ss_dssp CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET---TBTT------------------BCCSCBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEeccCCCCCChHHHCcCcccCCCcccc---CcCC------------------CCCccccEEEeehHHEEECc
Confidence 99999999999999999999999999999976654 3211 13699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV 245 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi 245 (380)
+++++++||.+ .+++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus 144 ~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 144 DNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL 221 (356)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 99999998876 5788999996 788999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCCC-ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeee
Q 016933 246 NTSEHD-RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFF 323 (380)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 323 (380)
++++.+ .++.+.+++.+++++|+|||++|.+..+..++++++++ |+++.+|..... ..++... +.+++++.|+..
T Consensus 222 ~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~i~g~~~ 298 (356)
T 1pl8_A 222 QISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEM--TTVPLLHAAIREVDIKGVFR 298 (356)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSC--CCCCHHHHHHTTCEEEECCS
T ss_pred cCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCCCC--CccCHHHHHhcceEEEEecc
Confidence 887311 34777788877668999999999977889999999997 999999975422 2233222 348899998754
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
+ .+++.+++++++++++++.+++++.|+++++++||+.++++..+|+||+++
T Consensus 299 ~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~ 350 (356)
T 1pl8_A 299 Y----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD 350 (356)
T ss_dssp C----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred c----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence 2 457999999999999988888999999999999999999884479999875
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=432.13 Aligned_cols=338 Identities=28% Similarity=0.389 Sum_probs=283.3
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhcc-CCC--CCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWES-KGQ--TPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g-~~~--~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+|||+++.+++..+++++++.|+|+++||||||.++|||++|+.++.| .++ ...+|.++|||++|+|+++|+++++|
T Consensus 4 ~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~ 83 (348)
T 2d8a_A 4 KMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGI 83 (348)
T ss_dssp EEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCSC
T ss_pred cceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCcC
Confidence 599999998885599999999999999999999999999999999887 332 24679999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+|+.|.+|++|++++|++.... |.. ..|+|+||+++|++.++++|+
T Consensus 84 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~ 141 (348)
T 2d8a_A 84 EVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF---GVD-------------------TDGVFAEYAVVPAQNIWKNPK 141 (348)
T ss_dssp CTTCEEEECCEECCSCCC------------CEET---TTS-------------------SCCSSBSEEEEEGGGEEECCT
T ss_pred CCCCEEEEcCCCCCCCChhhhCcCcccCCCCCee---cCC-------------------CCCcCcceEEeChHHeEECCC
Confidence 9999999999999999999999999999876543 321 136999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++||.+. +++|||+++ +.+++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++++
T Consensus 142 ~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~ 218 (348)
T 2d8a_A 142 SIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN 218 (348)
T ss_dssp TSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEEC
T ss_pred CCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEC
Confidence 99999999885 788999997 77888 9999999999999999999999999878999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-c-ccccccEEEeeee
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-I-NVLNERTLKGTFF 323 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~-~~~~~~~i~g~~~ 323 (380)
+++.+ +.+.+++++++ ++|++||++|.+..+..++++++++ |+++.+|..... ..++. . .+.+++++.|+..
T Consensus 219 ~~~~~--~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~~i~g~~~ 293 (348)
T 2d8a_A 219 PFEED--VVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGK--VTIDFNNLIIFKALTIYGITG 293 (348)
T ss_dssp TTTSC--HHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSSC--CCCCHHHHTTTTTCEEEECCC
T ss_pred CCCcC--HHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCCC--cccCchHHHHhCCcEEEEecC
Confidence 87655 88889888877 8999999999878899999999997 999999986532 23333 2 2358899998754
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeec-cccHHHHHHHHHcCCceeEEEecC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIP-FSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
.. ..++++++++++++|++++.+++++.|+ ++++++||+.++++..+|+||+++
T Consensus 294 ~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~ 348 (348)
T 2d8a_A 294 RH--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK 348 (348)
T ss_dssp CC--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred CC--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence 32 1346899999999999888888999999 999999999998755579999874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-58 Score=429.70 Aligned_cols=339 Identities=23% Similarity=0.350 Sum_probs=293.4
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC--CCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--TPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++.++++++++++++.|+|++|||||||.+++||++|+.++.|..+ ...+|.++|||++|+|+++|+++++|++
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v 80 (345)
T 3jv7_A 1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV 80 (345)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence 79999999998899999999999999999999999999999999988654 2568999999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEe-ccceEeCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH-SGCVAKINPL 167 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~-~~~~~~~p~~ 167 (380)
||||++.+..+|+.|.+|++|++++|...... |... .| ....|+|+||++++ .+.++++|+
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~---~~~~-~g-------------~~~~G~~aey~~v~~~~~~~~~p~- 142 (345)
T 3jv7_A 81 GDAVAVYGPWGCGACHACARGRENYCTRAADL---GITP-PG-------------LGSPGSMAEYMIVDSARHLVPIGD- 142 (345)
T ss_dssp TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHH---TCCC-BT-------------TTBCCSSBSEEEESCGGGEEECTT-
T ss_pred CCEEEEecCCCCCCChHHHCcCcCcCcccccc---cccc-CC-------------cCCCceeeEEEEecchhceEeCCC-
Confidence 99999999999999999999999999432211 1000 00 11236999999999 999999999
Q ss_pred CCccchhhcchhhhhhhhhhhh-ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLN-VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++||++++++.|||+++.+ ...+++|++|||+|+|++|++++|+||.+|..+|++++++++|+++++++|++++++
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~ 222 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVK 222 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEc
Confidence 9999999999999999999766 458999999999999999999999999995449999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
+++ + +.+.+++++++ ++|++||++|++..+..++++++++ |+++.+|..... ...++...+.+++++.++..+.
T Consensus 223 ~~~-~--~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~~~ 297 (345)
T 3jv7_A 223 SGA-G--AADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGA-HAKVGFFMIPFGASVVTPYWGT 297 (345)
T ss_dssp CST-T--HHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTTC-CEEESTTTSCTTCEEECCCSCC
T ss_pred CCC-c--HHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCC-CCCcCHHHHhCCCEEEEEecCC
Confidence 866 3 88899999888 9999999999977999999999997 999999987642 2233333455899999886443
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+++++++++++++++++ +++.|+++++++||+.+.+++. +|+||++
T Consensus 298 ---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p 345 (345)
T 3jv7_A 298 ---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP 345 (345)
T ss_dssp ---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred ---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence 357899999999998876 4689999999999999999887 7999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=429.60 Aligned_cols=336 Identities=24% Similarity=0.399 Sum_probs=290.6
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhcc-CCC--CCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWES-KGQ--TPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g-~~~--~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+|||+++.+++. +++++++.|+|+++||||||.++|||++|+.++.+ ... ...+|.++|||++|+|+++|+++++|
T Consensus 4 ~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~ 82 (352)
T 1e3j_A 4 DNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHL 82 (352)
T ss_dssp CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSC
T ss_pred cCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCC
Confidence 599999988764 99999999999999999999999999999998874 222 23579999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+|+.|.+|++|.+++|.+..+. |... ..|+|+||++++++.++++|+
T Consensus 83 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~~------------------~~G~~aey~~v~~~~~~~iP~ 141 (352)
T 1e3j_A 83 KKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPP------------------DDGNLARYYVHAADFCHKLPD 141 (352)
T ss_dssp CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTT------------------BCCSCBSEEEEEGGGEEECCT
T ss_pred CCCCEEEEcCcCCCCCChhhhCcCcccCCCCccc---CcCC------------------CCccceeEEEeChHHeEECcC
Confidence 9999999999999999999999999999977654 3211 136999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
++++++||.+ .+++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++++++
T Consensus 142 ~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~ 218 (352)
T 1e3j_A 142 NVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLV 218 (352)
T ss_dssp TSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEc
Confidence 9999998876 5788999997 78899999999999999999999999999999 6999999999999999999999999
Q ss_pred CCC-CCccHHHHHHHHhC----CCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEe
Q 016933 247 TSE-HDRPIQEVIAEMTN----GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKG 320 (380)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~----~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g 320 (380)
+++ .+ +.+.+++.++ +++|++||++|....+..++++++++ |+++.+|..... ..++... +.+++++.|
T Consensus 219 ~~~~~~--~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~i~g 293 (352)
T 1e3j_A 219 VDPAKE--EESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQM--VTVPLVNACAREIDIKS 293 (352)
T ss_dssp CCTTTS--CHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSSC--CCCCHHHHHTTTCEEEE
T ss_pred Cccccc--HHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC--ccccHHHHHhcCcEEEE
Confidence 874 43 6677777765 48999999999977889999999997 999999975422 2222222 348899998
Q ss_pred eeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC--ceeEEEecC
Q 016933 321 TFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE--GLRCIISME 379 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~--~~Kvvi~~~ 379 (380)
+..+ .+++++++++++++++++.+++++.|+++++++||+.+.+++ .+|+||+++
T Consensus 294 ~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~ 350 (352)
T 1e3j_A 294 VFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCR 350 (352)
T ss_dssp CCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECC
T ss_pred eccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 7542 457999999999999988888999999999999999999886 379999875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=432.46 Aligned_cols=342 Identities=23% Similarity=0.337 Sum_probs=298.0
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccch-hhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLY-FWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~-~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.++++ +++++++.|+|++|||||||.+++||++|++ ++.|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vG 78 (352)
T 3fpc_A 1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPG 78 (352)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCC
Confidence 89999999887 9999999999999999999999999999999 5576544 4679999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc--ceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG--CVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~--~~~~~p~~ 167 (380)
|||++.+..+|+.|.+|++|+++.|.........| ....|+|+||+.++.. .++++|++
T Consensus 79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~-------------------~~~~G~~aey~~v~~~~~~~~~iP~~ 139 (352)
T 3fpc_A 79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFS-------------------NVKDGVFGEFFHVNDADMNLAHLPKE 139 (352)
T ss_dssp CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBT-------------------TTBCCSSBSCEEESSHHHHCEECCTT
T ss_pred CEEEEccccCCCCchhhcCCCcCCccccccccccc-------------------cCCCCcccceEEeccccCeEEECCCC
Confidence 99999999999999999999999997543210001 1124699999999976 99999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++||.++++++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++
T Consensus 140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINY 218 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECG
T ss_pred CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcC
Confidence 99999999999999999996 78999999999999999999999999999999789999999999999999999999998
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc---ccccEEEeeee
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV---LNERTLKGTFF 323 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~~~~~i~g~~~ 323 (380)
++.+ +.+.+++++++ ++|++||++|++..+..++++++++ |+++.+|...+...++.....+ .+++++.++..
T Consensus 219 ~~~~--~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 295 (352)
T 3fpc_A 219 KNGD--IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLC 295 (352)
T ss_dssp GGSC--HHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCC
T ss_pred CCcC--HHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeec
Confidence 7765 88999999988 8999999999988899999999997 9999999876554555443322 36788888754
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeec-cccHHHHHHHHHcCCc--eeEEEecC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIP-FSEINKAFEYMVKGEG--LRCIISME 379 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~a~~~l~~~~~--~Kvvi~~~ 379 (380)
.. ..+++++++++++++++++.+++++.|+ |+++++||+.+.+++. +|+||+++
T Consensus 296 ~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~ 352 (352)
T 3fpc_A 296 PG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352 (352)
T ss_dssp CC--HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred cC--chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence 21 2346899999999999999888999999 9999999999988654 69999874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=430.90 Aligned_cols=337 Identities=27% Similarity=0.398 Sum_probs=295.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.++++++++++++.|+|+++||||||.++|||++|+.++.|..+ ...+|.++|||++|+|+++|+++++|+
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2dq4_A 1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ 80 (343)
T ss_dssp CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence 78999998887799999999999999999999999999999999887543 356799999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||++.+..+|+.|.+|++|++++|.+.... |.. ..|+|+||++++.+.++++|++
T Consensus 81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~~ 138 (343)
T 2dq4_A 81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQIL---GVD-------------------RDGGFAEYVVVPAENAWVNPKD 138 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEEGGGEEEECTT
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCccee---cCC-------------------CCCcceeEEEEchHHeEECCCC
Confidence 999999999999999999999999999976543 321 1369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++||.+ .+++|||+++.+.+++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++++
T Consensus 139 ~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~ 215 (343)
T 2dq4_A 139 LPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNP 215 (343)
T ss_dssp SCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECT
T ss_pred CCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCc
Confidence 999999887 4778999997547889 999999999999999999999999987799999999999999999 9999998
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-c-ccccccEEEeeeecC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-I-NVLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~-~~~~~~~i~g~~~~~ 325 (380)
++.+ +.+.+++++++++|++||++|.+..+..++++++++ |+++.+|..... ..++. . .+.+++++.|+...
T Consensus 216 ~~~~--~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~~i~g~~~~- 289 (343)
T 2dq4_A 216 LEED--LLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDP--IRFDLAGELVMRGITAFGIAGR- 289 (343)
T ss_dssp TTSC--HHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSSC--EEECHHHHTGGGTCEEEECCSC-
T ss_pred CccC--HHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCC--ceeCcHHHHHhCceEEEEeecC-
Confidence 7755 888888888448999999999978899999999997 999999986433 33333 2 34589999987543
Q ss_pred CCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 326 YKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
...+++++++++++++++++.+++++.|+++++++||+.+.+++.+|+||+++
T Consensus 290 -~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~ 342 (343)
T 2dq4_A 290 -RLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK 342 (343)
T ss_dssp -CTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred -CCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence 13456899999999999888888999999999999999998877799999875
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-58 Score=432.35 Aligned_cols=334 Identities=25% Similarity=0.377 Sum_probs=287.9
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCC-CCCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAP-PQAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
.+++|||+++.+++++++++++|.|+ |+++||||||.++|||++|++++.|..+ ...+|.++|||++|+|+++|++
T Consensus 12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~ 91 (359)
T 1h2b_A 12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG 91 (359)
T ss_dssp -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence 46789999999988779999999999 9999999999999999999999988654 3468999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||+..+..+||.|.+|++|++++|.+.... |+. ..|+|+||++++++.++
T Consensus 92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~---G~~-------------------~~G~~aey~~v~~~~~~ 149 (359)
T 1h2b_A 92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP---GLN-------------------IDGGFAEFMRTSHRSVI 149 (359)
T ss_dssp CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCB---TTT-------------------BCCSSBSEEEECGGGEE
T ss_pred CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCcccc---ccC-------------------CCCcccceEEechHhEE
Confidence 99999999999999999999999999999999876543 321 13699999999999999
Q ss_pred eCCCCCCccchh---hcchhhhhhhhhhhhc-cCCCCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHH
Q 016933 163 KINPLAPLDKVC---ILSCGVSTGLGATLNV-AKPERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 163 ~~p~~~~~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~ 237 (380)
++|+++++++|| ++++++.|||+++.+. +++++|++|||+|+|++|++++|+||.+ |+ +|++++++++|+++++
T Consensus 150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~ 228 (359)
T 1h2b_A 150 KLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE 228 (359)
T ss_dssp ECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH
T ss_pred ECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH
Confidence 999999999999 7888999999997655 8999999999999999999999999999 99 8999999999999999
Q ss_pred hcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChh--hHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cc
Q 016933 238 KFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNID--NMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VL 313 (380)
Q Consensus 238 ~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~ 313 (380)
++|+++++|+++. +.+.+++++++ ++|++||++|++. .+..++++ ++ |+++.+|..... .++... +.
T Consensus 229 ~lGa~~vi~~~~~---~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~~---~~~~~~~~~ 299 (359)
T 1h2b_A 229 RLGADHVVDARRD---PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGEL---RFPTIRVIS 299 (359)
T ss_dssp HTTCSEEEETTSC---HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSCC---CCCHHHHHH
T ss_pred HhCCCEEEeccch---HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCCC---CCCHHHHHh
Confidence 9999999998763 77888888877 8999999999965 78888887 86 999999986533 233222 34
Q ss_pred cccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 314 NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 314 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+++++.|+..+. .+++.+++++++++++++ .+ +.|+|+++++||+.+.+++. +|+||++
T Consensus 300 ~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 359 (359)
T 1h2b_A 300 SEVSFEGSLVGN---YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359 (359)
T ss_dssp TTCEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred CCcEEEEecCCC---HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence 899999976432 346899999999998764 46 99999999999999998876 7999874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-58 Score=428.49 Aligned_cols=337 Identities=23% Similarity=0.367 Sum_probs=284.7
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|+|||+++.++++++++++++.|+|+++||||||.++|||++|+.++.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v 82 (348)
T 3two_A 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI 82 (348)
T ss_dssp EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence 67999999999888999999999999999999999999999999999987776788999999999999999999999999
Q ss_pred CCEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 89 GDHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 89 GdrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
||||++.+ ..+||.|.+|++|++++|. .... |+..... ...| ....|+|+||++++.+.++++|++
T Consensus 83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~---~~~~~~~----~~~~-----~~~~G~~aey~~v~~~~~~~iP~~ 149 (348)
T 3two_A 83 GDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVF---TYDCLDS----FHDN-----EPHMGGYSNNIVVDENYVISVDKN 149 (348)
T ss_dssp TCEEEECSEEECCSCSHHHHTTCGGGCT-TCEE---SSSSEEG----GGTT-----EECCCSSBSEEEEEGGGCEECCTT
T ss_pred CCEEEEeCCcCCCCCChhHhCCCcccCc-cccc---ccccccc----cccC-----CcCCccccceEEechhhEEECCCC
Confidence 99998765 4799999999999999998 3322 2210000 0000 112379999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++||++++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++ .
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~ 226 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T 226 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S
T ss_pred CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C
Confidence 999999999999999999964 5699999999999999999999999999999 999999999999999999999988 2
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC-CCce-eecccccc-ccccEEEeeeec
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS-KDAV-FMTKPINV-LNERTLKGTFFG 324 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~-~~~~~~~~-~~~~~i~g~~~~ 324 (380)
+. + .+ ..++|++||++|++..+..++++++++ |+++.+|... .... ++... .+ .+++++.|+..+
T Consensus 227 ~~-~-~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~-~~~~~~~~i~g~~~~ 294 (348)
T 3two_A 227 DP-K-QC--------KEELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFD-FIHLGNRKVYGSLIG 294 (348)
T ss_dssp SG-G-GC--------CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCGGGCCEEEHHH-HHHTCSCEEEECCSC
T ss_pred CH-H-HH--------hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCCCCcccCCHHH-HHhhCCeEEEEEecC
Confidence 22 1 11 117999999999966999999999997 9999999865 2222 22222 23 689999998754
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
. .+++.+++++++++++++. ++.|+++++++||+.+.+++. +|+||+++
T Consensus 295 ~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~ 344 (348)
T 3two_A 295 G---IKETQEMVDFSIKHNIYPE---IDLILGKDIDTAYHNLTHGKAKFRYVIDMK 344 (348)
T ss_dssp C---HHHHHHHHHHHHHTTCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEEGG
T ss_pred C---HHHHHHHHHHHHhCCCCce---EEEEEHHHHHHHHHHHHcCCCceEEEEecC
Confidence 3 3468999999999988763 489999999999999999887 79999986
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=418.59 Aligned_cols=334 Identities=30% Similarity=0.478 Sum_probs=290.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.++++++++++++.|+|+++||||||.++|||++|+..+.|..+ ...+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG 80 (339)
T 1rjw_A 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (339)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence 78999988886799999999999999999999999999999999888654 24679999999999999999999999999
Q ss_pred CEEEecCcc-CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 90 DHVLPVFTG-ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 90 drV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
|||++.+.. .||.|.+|++|++++|.+.... |+. ..|+|+||+.++++.++++|+++
T Consensus 81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~~P~~~ 138 (339)
T 1rjw_A 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA---GYS-------------------VDGGYAEYCRAAADYVVKIPDNL 138 (339)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEEGGGCEECCTTS
T ss_pred CEEEEecCCCCCCCCchhhCcCcccCCCccee---ecC-------------------CCCcceeeEEechHHEEECCCCC
Confidence 999987654 5999999999999999876543 321 13699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++++.
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~ 216 (339)
T 1rjw_A 139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL 216 (339)
T ss_dssp CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence 999999999999999999754 589999999999998899999999999999 999999999999999999999999887
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~ 327 (380)
+.+ +.+.+++.+ +++|++||++|.+..+..++++++++ |+++.+|...+. ..++... +.+++++.|+..+.
T Consensus 217 ~~~--~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~-- 288 (339)
T 1rjw_A 217 KED--AAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEE--MPIPIFDTVLNGIKIIGSIVGT-- 288 (339)
T ss_dssp TSC--HHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSSE--EEEEHHHHHHTTCEEEECCSCC--
T ss_pred Ccc--HHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCC--CccCHHHHHhCCcEEEEeccCC--
Confidence 654 777888777 68999999999878899999999997 999999987532 3333332 34889999876432
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
.+++++++++++++++++. ++.|+++++++||+.+.+++. +|+||++++
T Consensus 289 -~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 338 (339)
T 1rjw_A 289 -RKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED 338 (339)
T ss_dssp -HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred -HHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 3468999999999988653 578999999999999998875 799999864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=428.10 Aligned_cols=341 Identities=22% Similarity=0.323 Sum_probs=287.1
Q ss_pred hhhhhhhhhhccCCCCeEEEE--eecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQD--VEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~--~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
+|++|||+++.+++.++++++ ++.|+|++|||||||.++|||++|++++.|..+...+|.++|||++|+|+++|++++
T Consensus 3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~ 82 (360)
T 1piw_A 3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN 82 (360)
T ss_dssp TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence 377899999999886799999 999999999999999999999999999988665556899999999999999999999
Q ss_pred -CCCCCCEEEec-CccCCCCCccccCCCcCCCccc-ccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 85 -DLEVGDHVLPV-FTGECGDCRHCRSDVSNMCDLL-RINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 85 -~~~~GdrV~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
+|++||||++. +..+|+.|.+|++|++++|.+. ... +.....| ....|+|+||++++++.+
T Consensus 83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~---~~~~~~g-------------~~~~G~~aey~~v~~~~~ 146 (360)
T 1piw_A 83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY---SQPYEDG-------------YVSQGGYANYVRVHEHFV 146 (360)
T ss_dssp SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESS---SCBCTTS-------------CBCCCSSBSEEEEEGGGE
T ss_pred CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhcc---ccccCCC-------------ccCCCcceeEEEEchhhe
Confidence 99999999554 4578999999999999999865 111 0000000 012369999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+++|+++++++||++++++.|||+++.+ +++++|++|||+|+|++|++++|+||.+|+ +|++++++++|+++++++|+
T Consensus 147 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa 224 (360)
T 1piw_A 147 VPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA 224 (360)
T ss_dssp EECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC
T ss_pred EECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999755 899999999999999999999999999999 79999999999999999999
Q ss_pred ceEecCCCC-CccHHHHHHHHhCCCccEEEEcccC--hhhHHHHHHHhhcCCcEEEEEcCCCCCc-eeeccccccccccE
Q 016933 242 TDFVNTSEH-DRPIQEVIAEMTNGGVDRSVECTGN--IDNMISAFECVHDGWGVAVLVGVPSKDA-VFMTKPINVLNERT 317 (380)
Q Consensus 242 ~~vi~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~ 317 (380)
++++++++. + +.+.+. +++|++||++|. +..+..++++++++ |+++.+|.... . .++.. ..+.++++
T Consensus 225 ~~v~~~~~~~~--~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~-~~~~~~~~ 295 (360)
T 1piw_A 225 DHYIATLEEGD--WGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-HEMLSLK-PYGLKAVS 295 (360)
T ss_dssp SEEEEGGGTSC--HHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-SCCEEEC-GGGCBSCE
T ss_pred CEEEcCcCchH--HHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC-ccccCHH-HHHhCCeE
Confidence 999988765 4 544433 589999999998 77888999999997 99999998753 2 22221 12348899
Q ss_pred EEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeecccc--HHHHHHHHHcCCc-eeEEEecCC
Q 016933 318 LKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSE--INKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 318 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
+.|+..+. .+++++++++++++++++. + +.|++++ +++||+.+++++. +|+||++.|
T Consensus 296 i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~ 355 (360)
T 1piw_A 296 ISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGYD 355 (360)
T ss_dssp EEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred EEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecCc
Confidence 99876432 3468999999999987654 5 8999999 9999999988876 799998763
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-56 Score=414.68 Aligned_cols=335 Identities=22% Similarity=0.380 Sum_probs=293.0
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+++.+ +++++++.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2eih_A 1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA 80 (343)
T ss_dssp CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence 789999888875 889999999999999999999999999999999886543 36799999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||++.+..+|+.|.+|++|++++|.+.... |+. ..|+|+||+.++++.++++|++
T Consensus 81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~---G~~-------------------~~G~~aey~~v~~~~~~~~P~~ 138 (343)
T 2eih_A 81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQIL---GEH-------------------RHGTYAEYVVLPEANLAPKPKN 138 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEET---TTS-------------------SCCSSBSEEEEEGGGEEECCTT
T ss_pred CCCEEEECCCCCcccchhhccCccccccccccc---CcC-------------------CCccceeEEEeChHHeEECCCC
Confidence 999999999999999999999999999876543 321 1369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|++.+++
T Consensus 139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d 217 (343)
T 2eih_A 139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVN 217 (343)
T ss_dssp SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEc
Confidence 9999999999999999999876679999999999998 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
+.+.+ +.+.+++.+++ ++|++||++|. +.+..++++++++ |+++.+|..... ...++... +.+++++.|+...
T Consensus 218 ~~~~~--~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 292 (343)
T 2eih_A 218 YTHPD--WPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGY-EGTLPFAHVFYRQLSILGSTMA 292 (343)
T ss_dssp TTSTT--HHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSC-CCCCCTTHHHHTTCEEEECCSC
T ss_pred CCccc--HHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCC-cCccCHHHHHhCCcEEEEecCc
Confidence 87654 77888888766 89999999994 8899999999997 999999986533 21222222 3488999987532
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
..++++++++++++++++ +++++.|+|+++++||+.+++++. +|+|+++
T Consensus 293 ---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 342 (343)
T 2eih_A 293 ---SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342 (343)
T ss_dssp ---CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred ---cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence 245799999999999875 458899999999999999988876 7999976
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-57 Score=425.19 Aligned_cols=347 Identities=27% Similarity=0.389 Sum_probs=292.5
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC----
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS---- 84 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~---- 84 (380)
.+|||+++.++++.+++++++.|+|+++||||||.++|||++|+.++.|.++...+|.++|||++|+|+++| +|+
T Consensus 16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~ 94 (380)
T 1vj0_A 16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN 94 (380)
T ss_dssp EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence 469999999988559999999999999999999999999999999998865545689999999999999999 999
Q ss_pred --CCCCCCEEEecCccCCCCCcccc-CCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEE-eccc
Q 016933 85 --DLEVGDHVLPVFTGECGDCRHCR-SDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVV-HSGC 160 (380)
Q Consensus 85 --~~~~GdrV~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v-~~~~ 160 (380)
+|++||||++.+..+||.|.+|+ +|++++|.+.... |.....+ ......|+|+||+++ +++.
T Consensus 95 ~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~---g~~~~~~-----------~~~~~~G~~aey~~v~~~~~ 160 (380)
T 1vj0_A 95 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY---GINRGCS-----------EYPHLRGCYSSHIVLDPETD 160 (380)
T ss_dssp SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEET---TTTCCSS-----------STTCCCSSSBSEEEECTTCC
T ss_pred CCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCccee---ccccccC-----------CCCCCCccccceEEEcccce
Confidence 99999999999999999999999 9999999876543 3210000 000113699999999 9999
Q ss_pred eEeCCCCCCcc-chhhcchhhhhhhhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 161 VAKINPLAPLD-KVCILSCGVSTGLGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 161 ~~~~p~~~~~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
++++|++++++ +|+.+. +++|||+++ +.++ +++|++|||+|+|++|++++|+||.+|+.+|++++++++|++++++
T Consensus 161 ~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 238 (380)
T 1vj0_A 161 VLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 238 (380)
T ss_dssp EEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred EEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence 99999999999 666555 999999997 6678 9999999999999999999999999994499999999999999999
Q ss_pred cCCceEecCCCC-CccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC-CCceeeccccc--cc
Q 016933 239 FGVTDFVNTSEH-DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS-KDAVFMTKPIN--VL 313 (380)
Q Consensus 239 lG~~~vi~~~~~-~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~--~~ 313 (380)
+|++++++++.. +.++.+.+++++++ ++|+|||++|.+..+..++++++++ |+++.+|... .. ...++... +.
T Consensus 239 lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~-~~~~~~~~~~~~ 316 (380)
T 1vj0_A 239 IGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQD-PVPFKVYEWLVL 316 (380)
T ss_dssp TTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCC-CEEECHHHHTTT
T ss_pred cCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCC-CeeEchHHHHHh
Confidence 999999988611 12478888888877 8999999999877899999999997 9999999865 31 23333333 45
Q ss_pred cccEEEeeeecCCCCCCChHHHHHHHHc--CCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecC
Q 016933 314 NERTLKGTFFGNYKPRTDLPSVVDMYMN--KQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 379 (380)
Q Consensus 314 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~ 379 (380)
+++++.|+..+. .++++++++++++ +++ .+++++.|+|+++++||+.+++++..|+||+++
T Consensus 317 ~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~ 379 (380)
T 1vj0_A 317 KNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKVILYPE 379 (380)
T ss_dssp TTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred CCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence 899999976532 3568999999999 876 556889999999999999998775459999875
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=426.13 Aligned_cols=339 Identities=22% Similarity=0.328 Sum_probs=292.8
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCC-CCCCeEEEEEeeeecCcccchhhccCCC-------CCCCCccccccccEEEEE
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAP-PQAMEVRIKIKYTSLCRTDLYFWESKGQ-------TPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlV~v~~~~l~~~D~~~~~g~~~-------~~~~p~v~G~e~vG~V~~ 78 (380)
.+.+|++.++..++. +++++++.|+ |++|||||||.++|||++|+.++.|... ...+|.++|||++|+|++
T Consensus 27 ~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~ 105 (404)
T 3ip1_A 27 GKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE 105 (404)
T ss_dssp TTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEE
T ss_pred hhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEE
Confidence 455688888877764 9999999999 9999999999999999999999876321 246899999999999999
Q ss_pred eCCCC------CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceee
Q 016933 79 VGEGV------SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSE 152 (380)
Q Consensus 79 vG~~v------~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~ 152 (380)
+|+++ ++|++||||++.+..+|+.|.+|++|++++|++.... |+. ..|+|+|
T Consensus 106 vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~ae 163 (404)
T 3ip1_A 106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNEL---GFN-------------------VDGAFAE 163 (404)
T ss_dssp ECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBS
T ss_pred ECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCcccccc---CCC-------------------CCCCCcc
Confidence 99999 8999999999999999999999999999999987654 432 1369999
Q ss_pred EEEEeccceEeCCCCCC------ccchhhcchhhhhhhhhhhhc-cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEE
Q 016933 153 YTVVHSGCVAKINPLAP------LDKVCILSCGVSTGLGATLNV-AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIG 225 (380)
Q Consensus 153 ~~~v~~~~~~~~p~~~~------~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~ 225 (380)
|++++.+.++++|+.++ +.++|+++.+++|||+++... +++++|++|||+|+|++|++++|+||.+|+.+|++
T Consensus 164 y~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~ 243 (404)
T 3ip1_A 164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243 (404)
T ss_dssp EEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred eEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999886 455888999999999997654 48999999999999999999999999999988999
Q ss_pred EcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccCh-hhHHHHHHHh----hcCCcEEEEEcCC
Q 016933 226 VDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNI-DNMISAFECV----HDGWGVAVLVGVP 299 (380)
Q Consensus 226 ~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~-~~~~~~~~~l----~~~~G~~v~~g~~ 299 (380)
++++++|+++++++|+++++++++.+ +.+.+++++++ ++|+|||++|++ ..+..+++++ +++ |+++.+|..
T Consensus 244 ~~~~~~~~~~~~~lGa~~vi~~~~~~--~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~ 320 (404)
T 3ip1_A 244 SEPSEVRRNLAKELGADHVIDPTKEN--FVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARA 320 (404)
T ss_dssp ECSCHHHHHHHHHHTCSEEECTTTSC--HHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCC
T ss_pred ECCCHHHHHHHHHcCCCEEEcCCCCC--HHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCC
Confidence 99999999999999999999987766 89999999988 999999999996 3677788888 997 999999987
Q ss_pred CCCceeeccccc-cccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 300 SKDAVFMTKPIN-VLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
.+...+ +... +.+++++.|+... ...+++.++++++++| +++.+++++.|+|+++++||+.+. .+|+||++
T Consensus 321 ~~~~~~--~~~~~~~~~~~i~g~~~~--~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~---~GKvvl~~ 392 (404)
T 3ip1_A 321 DAKIPL--TGEVFQVRRAQIVGSQGH--SGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ---TDKSLVKV 392 (404)
T ss_dssp CSCEEE--CHHHHHHTTCEEEECCCC--CSTTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT---TCTTCSCE
T ss_pred CCCCcc--cHHHHhccceEEEEecCC--CchHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh---CCcEEEec
Confidence 654333 3332 3489999998632 2245799999999999 988888999999999999999887 45888776
Q ss_pred C
Q 016933 379 E 379 (380)
Q Consensus 379 ~ 379 (380)
+
T Consensus 393 ~ 393 (404)
T 3ip1_A 393 T 393 (404)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-56 Score=414.81 Aligned_cols=341 Identities=25% Similarity=0.408 Sum_probs=292.7
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
+|.+|||+++.+++.++++++++.|+|+++||||||.++|||++|+.++.|..+ ...+|.++|||++|+|+++|+++++
T Consensus 2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 81 (347)
T 2hcy_A 2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG 81 (347)
T ss_dssp CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence 466799999999886799999999999999999999999999999999888654 2467999999999999999999999
Q ss_pred CCCCCEEEecCcc-CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 86 LEVGDHVLPVFTG-ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 86 ~~~GdrV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
|++||||++.+.. .||.|.+|++|++++|.+.... |.. ..|+|+||+.++++.++++
T Consensus 82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~i 139 (347)
T 2hcy_A 82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS---GYT-------------------HDGSFQQYATADAVQAAHI 139 (347)
T ss_dssp CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEETTTSEEE
T ss_pred CcCCCEEEEecCCCCCCCChhhhCCCcccCcccccc---ccC-------------------CCCcceeEEEeccccEEEC
Confidence 9999999987654 5999999999999999876543 321 1369999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
|+++++++||++++++.|||+++. ..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++.
T Consensus 140 P~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~ 217 (347)
T 2hcy_A 140 PQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEV 217 (347)
T ss_dssp CTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCce
Confidence 999999999999999999999964 458999999999998 9999999999999999 9999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 322 (380)
++|+.+.+ ++.+.+++.+.+++|++||++|....+..++++++++ |+++.+|...+ ....++... +.+++++.|+.
T Consensus 218 ~~d~~~~~-~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~ 294 (347)
T 2hcy_A 218 FIDFTKEK-DIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAG-AKCCSDVFNQVVKSISIVGSY 294 (347)
T ss_dssp EEETTTCS-CHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTT-CEEEEEHHHHHHTTCEEEECC
T ss_pred EEecCccH-hHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCC-CCCCCCHHHHhhCCcEEEEcc
Confidence 98876321 3777888777668999999999878899999999997 99999998653 233333332 34899999876
Q ss_pred ecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
.+. .+++++++++++++++++. +++|+++++++||+.+.+++. +|+||++++
T Consensus 295 ~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 347 (347)
T 2hcy_A 295 VGN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK 347 (347)
T ss_dssp CCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred CCC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence 432 3468999999999988653 578999999999999998875 799998763
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-56 Score=416.06 Aligned_cols=335 Identities=24% Similarity=0.348 Sum_probs=292.0
Q ss_pred hhhhhhccC-CCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEA-GKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~-~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++... ++.++++++|+|+|++|||||||.++|||++|++++.|.++ .++|.++|||++|+|+++|++|++|++|
T Consensus 1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~-~~~p~i~GhE~aG~V~~vG~~V~~~~~G 79 (348)
T 4eez_A 1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG-NKAGTVLGHEGIGIVKEIGADVSSLQVG 79 (348)
T ss_dssp CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC-CCTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC-CCCCcccceeEEEEEEEECceeeecccC
Confidence 899888543 34599999999999999999999999999999999998665 4679999999999999999999999999
Q ss_pred CEEEecCcc-CCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 90 DHVLPVFTG-ECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 90 drV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
|||++.+.. .|+.|.+|..+.++.|...... +.. ..|+|+||+.++++.++++|+++
T Consensus 80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~-------------------~~G~~ae~~~~~~~~~~~iP~~~ 137 (348)
T 4eez_A 80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKNA---GYS-------------------VDGGMAEEAIVVADYAVKVPDGL 137 (348)
T ss_dssp CEEEEESEEECCSSSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEEGGGSCBCCTTS
T ss_pred CeEeecccccccCccccccCCccccccccccc---ccc-------------------cCCcceeeccccccceeecCCCC
Confidence 999876644 5789999999999999877654 221 23699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++|+++++++.|||.++ +.+++++|++|||+|+|++|.+++|+|+.++..+|++++++++|+++++++|+++++|+.
T Consensus 138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-
T ss_pred CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC
Confidence 9999999999999999985 678899999999999999999999999987545999999999999999999999999998
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
+.+ +.+.+++++++ ++|.++|++++...+..++++++++ |+++.+|.......++.. ..+.+++++.|+..+.
T Consensus 217 ~~~--~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~i~gs~~~~-- 290 (348)
T 4eez_A 217 DVN--PVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPNTEMTLSVP-TVVFDGVEVAGSLVGT-- 290 (348)
T ss_dssp CCC--HHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCSCEEEECHH-HHHHSCCEEEECCSCC--
T ss_pred CCC--HHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccCCCCccCHH-HHHhCCeEEEEEecCC--
Confidence 876 88999999988 9999999999989999999999997 999999986543333322 2345899999987543
Q ss_pred CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 328 PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
+++++++++++++|++++ +++.|+|+++++||+.+++++. +|+||+|+
T Consensus 291 -~~~~~~~~~l~~~g~i~p---~~~~~~l~~~~~A~~~l~~g~~~GKvVl~~s 339 (348)
T 4eez_A 291 -RLDLAEAFQFGAEGKVKP---IVATRKLEEINDIIDEMKAGKIEGRMVIDFT 339 (348)
T ss_dssp -HHHHHHHHHHHHTTSCCC---CEEEECGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred -HHHHHHHHHHHHcCCCEE---EEEEEeHHHHHHHHHHHHCCCCccEEEEEcc
Confidence 356999999999998764 3588999999999999999987 69999986
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=413.93 Aligned_cols=335 Identities=21% Similarity=0.245 Sum_probs=287.0
Q ss_pred hhhhhhhhhhccCC-CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCC
Q 016933 7 LILTCKAAVAWEAG-KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 7 ~~~~~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
+|.+|||+++.+++ +.+++++++.|+|++|||||||.++|||++|+.++.|..+ ...+|.++|||++|+|+++|++++
T Consensus 24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~ 103 (363)
T 3uog_A 24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVT 103 (363)
T ss_dssp CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCC
Confidence 45679999998764 3499999999999999999999999999999999988665 357899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCC-CcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV-RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
+|++||||++.+.. +|++|. +.|.+...... .|. ...|+|+||+.++++.+++
T Consensus 104 ~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~-------------------~~~G~~aey~~v~~~~~~~ 157 (363)
T 3uog_A 104 RFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGG-------------------AHPGVLSEYVVLPEGWFVA 157 (363)
T ss_dssp SCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTT-------------------TSCCCCBSEEEEEGGGEEE
T ss_pred CCCCCCEEEEeccc------cccccc-cccccccccccccCc-------------------CCCCcceeEEEechHHeEE
Confidence 99999999987543 678888 88974221100 111 1236999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus 158 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~ 236 (363)
T 3uog_A 158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH 236 (363)
T ss_dssp CCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred CCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence 999999999999999999999998788999999999999999999999999999999 9999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGT 321 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 321 (380)
+++.+..+ +.+.+++++++ ++|++||++|. ..+..++++++++ |+++.+|..... ...++... +.+++++.|+
T Consensus 237 vi~~~~~~--~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~ 311 (363)
T 3uog_A 237 GINRLEED--WVERVYALTGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGVLEGF-EVSGPVGPLLLKSPVVQGI 311 (363)
T ss_dssp EEETTTSC--HHHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHEEEE-EEEEEECCCSSC-EECCBTTHHHHTCCEEEEC
T ss_pred EEcCCccc--HHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhhcC-CEEEEEecCCCc-ccCcCHHHHHhCCcEEEEE
Confidence 99854344 88999999988 99999999996 8899999999997 999999987632 23333333 4489999998
Q ss_pred eecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEec
Q 016933 322 FFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 378 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~ 378 (380)
..+. .+++++++++++++++ ++++++.|+++++++||+.+.+++.+|+||++
T Consensus 312 ~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~ 363 (363)
T 3uog_A 312 SVGH---RRALEDLVGAVDRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF 363 (363)
T ss_dssp CCCC---HHHHHHHHHHHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred ecCC---HHHHHHHHHHHHcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence 7542 3578999999999976 45688999999999999999988867999975
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-56 Score=415.41 Aligned_cols=330 Identities=28% Similarity=0.422 Sum_probs=265.1
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC--CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
+|||+++.++++++++++++.|+|+++||||||.++|||++|+.++.|..+ ...+|.++|||++|+|+++|++ ++|+
T Consensus 3 ~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~~ 81 (344)
T 2h6e_A 3 KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKVK 81 (344)
T ss_dssp EEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCCC
T ss_pred eeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCCC
Confidence 499999999886799999999999999999999999999999999988655 3468999999999999999999 9999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEe-ccceEeCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH-SGCVAKINP 166 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~-~~~~~~~p~ 166 (380)
+||||+..+..+||.|.+|++|.+++|.+.... |.. ..|+|+||+++| ++.++++ +
T Consensus 82 ~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~---G~~-------------------~~G~~aey~~v~~~~~~~~i-~ 138 (344)
T 2h6e_A 82 KGDNVVVYATWGDLTCRYCREGKFNICKNQIIP---GQT-------------------TNGGFSEYMLVKSSRWLVKL-N 138 (344)
T ss_dssp TTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCB---TTT-------------------BCCSSBSEEEESCGGGEEEE-S
T ss_pred CCCEEEECCCCCCCCChhhhCCCcccCCCcccc---ccc-------------------cCCcceeeEEecCcccEEEe-C
Confidence 999999898999999999999999999876433 321 136999999999 9999999 9
Q ss_pred CCCccchhhcchhhhhhhhhhhhc----cCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhcC
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNV----AKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~lG 240 (380)
++++++||++++++.|||+++.+. +++ +|++|||+|+|++|++++|+||.+ |+ +|++++++++|+++++++|
T Consensus 139 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lG 216 (344)
T 2h6e_A 139 SLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELG 216 (344)
T ss_dssp SSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHT
T ss_pred CCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhC
Confidence 999999999999999999997654 288 999999999999999999999999 99 8999999999999999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEE
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTL 318 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i 318 (380)
+++++++++. .+.+++++++ ++|+|||++|.+..+..++++++++ |+++.+|..... ..++... +.+++++
T Consensus 217 a~~vi~~~~~----~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~i 289 (344)
T 2h6e_A 217 ADYVSEMKDA----ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKR--VSLEAFDTAVWNKKL 289 (344)
T ss_dssp CSEEECHHHH----HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSSC--CCCCHHHHHHTTCEE
T ss_pred CCEEeccccc----hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCCCC--cccCHHHHhhCCcEE
Confidence 9999976541 1224455555 8999999999966899999999997 999999986532 2333322 3488999
Q ss_pred EeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 319 KGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.|+..+. .+++++++++++++++++. + +.|+|+++++||+.+++++. +|+||++
T Consensus 290 ~g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 344 (344)
T 2h6e_A 290 LGSNYGS---LNDLEDVVRLSESGKIKPY--I-IKVPLDDINKAFTNLDEGRVDGRQVITP 344 (344)
T ss_dssp EECCSCC---HHHHHHHHHHHHTTSSCCC--E-EEECC----------------CEEEECC
T ss_pred EEEecCC---HHHHHHHHHHHHcCCCCcc--e-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence 9876432 3568999999999987644 6 99999999999999988876 7999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=419.63 Aligned_cols=343 Identities=25% Similarity=0.373 Sum_probs=280.8
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
..|+|+|++..++++++++++++.|+|+++||||||.++|||++|+.++.|..+...+|.++|||++|+|+++|++|++|
T Consensus 19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~ 98 (369)
T 1uuf_A 19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKY 98 (369)
T ss_dssp ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCC
Confidence 34679999988877779999999999999999999999999999999998865555689999999999999999999999
Q ss_pred CCCCEEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 87 EVGDHVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 87 ~~GdrV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
++||||++.+. ..||.|.+|++|.+++|++.... +.... ...| ....|+|+||+.+|.+.++++|
T Consensus 99 ~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~----~~~~~-----~~~g-----~~~~G~~aeyv~v~~~~~~~~P 164 (369)
T 1uuf_A 99 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT----YNSPT-----PDEP-----GHTLGGYSQQIVVHERYVLRIR 164 (369)
T ss_dssp CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET----TTSBC-----SSTT-----SBCCCSSBSEEEEEGGGCEECC
T ss_pred CCCCEEEEccCCCCCCCCcccCCCCcccCcchhcc----ccccc-----ccCC-----CCCCCcccceEEEcchhEEECC
Confidence 99999998775 46999999999999999875310 00000 0000 0123699999999999999999
Q ss_pred CC-CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 166 PL-APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 166 ~~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
++ +++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++++
T Consensus 165 ~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~v 242 (369)
T 1uuf_A 165 HPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEV 242 (369)
T ss_dssp SCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEE
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEE
Confidence 99 9999999999999999999754 689999999999999999999999999999 79999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeee
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFF 323 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 323 (380)
+++.+.+ +. +++. +++|++||++|.+..+..++++++++ |+++.+|...... ..++... +.+++++.|+..
T Consensus 243 i~~~~~~--~~---~~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~-~~~~~~~~~~~~~~i~g~~~ 314 (369)
T 1uuf_A 243 VNSRNAD--EM---AAHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPH-KSPEVFNLIMKRRAIAGSMI 314 (369)
T ss_dssp EETTCHH--HH---HTTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCS
T ss_pred eccccHH--HH---HHhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCc-cccCHHHHHhCCcEEEEeec
Confidence 9886532 32 2333 58999999999866899999999997 9999999865322 1222222 348899998764
Q ss_pred cCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
+. .+++++++++++++++++. + +.|+++++++|++.+.+++. +|+||+++
T Consensus 315 ~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~ 365 (369)
T 1uuf_A 315 GG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNR 365 (369)
T ss_dssp CC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred CC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence 32 2468899999999987654 4 57999999999999998876 79999875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=425.49 Aligned_cols=344 Identities=21% Similarity=0.282 Sum_probs=290.1
Q ss_pred hhhhhhhccCCCCeEEEEeecCCC-CC-----CeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPP-QA-----MEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~-~~-----~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
+|||+++.+++. +++++++.|+| ++ +||||||.++|||++|+.++.|.. ...+|.++|||++|+|+++|+++
T Consensus 2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~-~~~~p~v~GhE~~G~V~~vG~~v 79 (398)
T 2dph_A 2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRF-IVPKGHVLGHEITGEVVEKGSDV 79 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSS-CCCTTCBCCCCEEEEEEEECTTC
T ss_pred ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCC-CCCCCcccCCceEEEEEEECCCC
Confidence 589999988764 99999999987 68 999999999999999999998854 34679999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCC-----CCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP-----VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
++|++||||++.+..+||.|.+|++|++++|.+....+ .+|+. . ....|+|+||++++.
T Consensus 80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~---------~-------~~~~G~~aey~~v~~ 143 (398)
T 2dph_A 80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD---------L-------KGWSGGQAEYVLVPY 143 (398)
T ss_dssp CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT---------B-------SSCCCSSBSEEEESS
T ss_pred CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc---------c-------CCCCceeeeeEEecc
Confidence 99999999999999999999999999999998621100 01210 0 011369999999998
Q ss_pred c--ceEeCCCCCCccc----hhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 159 G--CVAKINPLAPLDK----VCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 159 ~--~~~~~p~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
+ .++++|+++++++ ||+++++++|||+++ +.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|
T Consensus 144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~ 222 (398)
T 2dph_A 144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER 222 (398)
T ss_dssp HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence 7 8999999999988 888999999999997 78899999999999999999999999999999889999999999
Q ss_pred HHHHHhcCCceEecCCCCCccH-HHHHHHHhCC-CccEEEEcccChh--------------hHHHHHHHhhcCCcEEEEE
Q 016933 233 FEEAKKFGVTDFVNTSEHDRPI-QEVIAEMTNG-GVDRSVECTGNID--------------NMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 233 ~~~~~~lG~~~vi~~~~~~~~~-~~~~~~~~~~-~~d~v~d~~g~~~--------------~~~~~~~~l~~~~G~~v~~ 296 (380)
+++++++|++ ++++++.+ + .+.+++++++ ++|+|||++|... .+..++++++++ |+++++
T Consensus 223 ~~~a~~lGa~-~i~~~~~~--~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~ 298 (398)
T 2dph_A 223 LKLLSDAGFE-TIDLRNSA--PLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIP 298 (398)
T ss_dssp HHHHHTTTCE-EEETTSSS--CHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECC
T ss_pred HHHHHHcCCc-EEcCCCcc--hHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEe
Confidence 9999999996 88887654 4 7888888887 8999999999742 689999999997 999999
Q ss_pred cCCCC-----------Cceeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCC--CCCceeeeeccccHHHH
Q 016933 297 GVPSK-----------DAVFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE--LEKFITHRIPFSEINKA 362 (380)
Q Consensus 297 g~~~~-----------~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~a 362 (380)
|.... .....++.. .+.+++++.++... ..+++.++++++++|+++ +.+++++.|+|+++++|
T Consensus 299 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A 375 (398)
T 2dph_A 299 GIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDG 375 (398)
T ss_dssp SCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHH
T ss_pred ccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHH
Confidence 97621 112233322 23488898886432 245689999999999988 76678999999999999
Q ss_pred HHHHHcCCceeEEEecC
Q 016933 363 FEYMVKGEGLRCIISME 379 (380)
Q Consensus 363 ~~~l~~~~~~Kvvi~~~ 379 (380)
|+.+.+++.+|+||+++
T Consensus 376 ~~~~~~~~~gKvvv~~~ 392 (398)
T 2dph_A 376 YAKFDKGSPAKFVIDPH 392 (398)
T ss_dssp HHHHHTTCSCEEEECTT
T ss_pred HHHHhcCCceEEEEecC
Confidence 99998877799999875
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=414.53 Aligned_cols=343 Identities=24% Similarity=0.344 Sum_probs=285.0
Q ss_pred chhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCC
Q 016933 6 GLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
+.+|+|+++...++.+.+++++++.|+|++|||||||.++|||++|++.+.|..+...+|.++|||++|+|+++|+++++
T Consensus 5 ~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~ 84 (357)
T 2cf5_A 5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSK 84 (357)
T ss_dssp -CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCS
T ss_pred cCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCC
Confidence 34788999988877667999999999999999999999999999999999886655568999999999999999999999
Q ss_pred CCCCCEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 86 LEVGDHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 86 ~~~GdrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
|++||||++.+ ..+||.|.+|++|++++|.+..+. +. +.. ..| ....|+|+||+++|++.++++
T Consensus 85 ~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~----~~---~~~---~~g-----~~~~G~~aey~~v~~~~~~~~ 149 (357)
T 2cf5_A 85 FTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS----YN---DVY---ING-----QPTQGGFAKATVVHQKFVVKI 149 (357)
T ss_dssp CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET----TT---SBC---TTS-----CBCCCSSBSCEEEEGGGEEEC
T ss_pred CCCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc----cc---ccc---cCC-----CCCCCccccEEEechhhEEEC
Confidence 99999998755 358999999999999999755431 10 000 000 112479999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCC-CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCc
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPE-RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVT 242 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~ 242 (380)
|+++++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+||.+|+ +|++++++++|+++++ ++|++
T Consensus 150 P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 150 PEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGAD 227 (357)
T ss_dssp CSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCS
T ss_pred cCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCc
Confidence 999999999999999999999964 56788 99999999999999999999999999 8999999999999988 89999
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeee
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTF 322 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 322 (380)
+++++++. +.+++.+ +++|++||++|.+..+..++++++++ |+++.+|....... .++...+.+++++.|+.
T Consensus 228 ~vi~~~~~-----~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~-~~~~~~~~~~~~i~g~~ 299 (357)
T 2cf5_A 228 DYVIGSDQ-----AKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPLQ-FLTPLLMLGRKVITGSF 299 (357)
T ss_dssp CEEETTCH-----HHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSCCC-CCHHHHHHHTCEEEECC
T ss_pred eeeccccH-----HHHHHhc-CCCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCCcc-ccCHHHHhCccEEEEEc
Confidence 99987652 2344544 37999999999866889999999997 99999998653222 12222345899999976
Q ss_pred ecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.+. .+++++++++++++++++. + +.|+++++++||+.+++++. +|+||+++
T Consensus 300 ~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~ 351 (357)
T 2cf5_A 300 IGS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVE 351 (357)
T ss_dssp SCC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETT
T ss_pred cCC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCC
Confidence 432 3468899999999988654 4 79999999999999998876 69999875
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=411.36 Aligned_cols=333 Identities=26% Similarity=0.374 Sum_probs=289.8
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC--------CCCCCccccccccEEEEEeCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--------TPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--------~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
|||+++.+++.+++++++|.|+|+++||||||.++|||++|++++.|..+ ...+|.++|||++|+|+++|++
T Consensus 1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~ 80 (347)
T 1jvb_A 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (347)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence 78999998887799999999999999999999999999999999887543 3467999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec-cce
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS-GCV 161 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~-~~~ 161 (380)
+++|++||||+..+..+|+.|.+|++|++++|.+.... |+. ..|+|+||+.+|+ +.+
T Consensus 81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~---G~~-------------------~~G~~aey~~v~~~~~~ 138 (347)
T 1jvb_A 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL---GIN-------------------FDGAYAEYVIVPHYKYM 138 (347)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB---TTT-------------------BCCSSBSEEEESCGGGE
T ss_pred CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccc---ccc-------------------CCCcceeEEEecCccce
Confidence 99999999999889999999999999999999876543 321 1369999999999 999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhc
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKF 239 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~l 239 (380)
+++ +++++++||++++++.|||+++ +.+++++|++|||+|+ |++|++++|+|+.. |+ +|+++++++++.++++++
T Consensus 139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~ 215 (347)
T 1jvb_A 139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA 215 (347)
T ss_dssp EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence 999 9999999999999999999997 4588999999999998 59999999999999 99 899999999999999999
Q ss_pred CCceEecCCCCCccHHHHHHHHhC-CCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccE
Q 016933 240 GVTDFVNTSEHDRPIQEVIAEMTN-GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERT 317 (380)
Q Consensus 240 G~~~vi~~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~ 317 (380)
|++.++++.+.+ +.+.+.+++. +++|++||++|.+..+..++++++++ |+++.+|...... .++... +.++++
T Consensus 216 g~~~~~~~~~~~--~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~--~~~~~~~~~~~~~ 290 (347)
T 1jvb_A 216 GADYVINASMQD--PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL--HYHAPLITLSEIQ 290 (347)
T ss_dssp TCSEEEETTTSC--HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCC--CCCHHHHHHHTCE
T ss_pred CCCEEecCCCcc--HHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCC--CCCHHHHHhCceE
Confidence 999999887654 7777888876 58999999999966899999999997 9999999865111 333322 348899
Q ss_pred EEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 318 LKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 318 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+.|+..+. .++++++++++++++++ +++++.|+|+++++||+.+++++. +|+||++
T Consensus 291 i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 347 (347)
T 1jvb_A 291 FVGSLVGN---QSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347 (347)
T ss_dssp EEECCSCC---HHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred EEEEeccC---HHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence 99876432 34689999999999875 457899999999999999998876 7999874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=418.32 Aligned_cols=346 Identities=23% Similarity=0.281 Sum_probs=285.8
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCC-CCe------EEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQ-AME------VRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~-~~e------VlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
||||+++.+++. +++++++.|+|+ ++| |||||.++|||++|+.++.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~ 79 (398)
T 1kol_A 2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD 79 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence 589999988764 999999999997 898 99999999999999999988543 457899999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCC---CCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP---VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
+++|++||||++.+..+||.|.+|++|++++|.+..... .+|+... ....|+|+||++++.+
T Consensus 80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~ 144 (398)
T 1kol_A 80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA 144 (398)
T ss_dssp CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence 999999999999999999999999999999998764210 0011000 0013699999999986
Q ss_pred --ceEeCCCCCCccc----hhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 160 --CVAKINPLAPLDK----VCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 160 --~~~~~p~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
.++++|+++++++ +++++++++|||+++ +.+++++|++|||+|+|++|++++|+||.+|+++|++++++++|+
T Consensus 145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~ 223 (398)
T 1kol_A 145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL 223 (398)
T ss_dssp HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred hCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence 8999999999887 788999999999997 478999999999999999999999999999997899999999999
Q ss_pred HHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChh---------------hHHHHHHHhhcCCcEEEEEc
Q 016933 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNID---------------NMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 234 ~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~---------------~~~~~~~~l~~~~G~~v~~g 297 (380)
++++++|++ ++++++.+ .+.+.+++++++ ++|+|||++|... .+..++++++++ |+++++|
T Consensus 224 ~~a~~lGa~-~i~~~~~~-~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G 300 (398)
T 1kol_A 224 AHAKAQGFE-IADLSLDT-PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPG 300 (398)
T ss_dssp HHHHHTTCE-EEETTSSS-CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECS
T ss_pred HHHHHcCCc-EEccCCcc-hHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEec
Confidence 999999997 77776532 277888888877 8999999999852 688999999997 9999999
Q ss_pred CCC-CCc----------eeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCC-CCCceeeeeccccHHHHHH
Q 016933 298 VPS-KDA----------VFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE-LEKFITHRIPFSEINKAFE 364 (380)
Q Consensus 298 ~~~-~~~----------~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~a~~ 364 (380)
... +.. .+.+... .+.+++++.++.. ...+.+.++++++.+|+++ ..+++++.|+|+++++||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~ 377 (398)
T 1kol_A 301 LYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYG 377 (398)
T ss_dssp CCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC---CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHH
T ss_pred cccCCcccccccccccccccccHHHHhhcccEEEeccc---ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHH
Confidence 752 111 1222222 2347888887532 1223578899999999887 3346789999999999999
Q ss_pred HHHcCCceeEEEecC
Q 016933 365 YMVKGEGLRCIISME 379 (380)
Q Consensus 365 ~l~~~~~~Kvvi~~~ 379 (380)
.+.+++.+|+||+++
T Consensus 378 ~~~~~~~gKvvi~~~ 392 (398)
T 1kol_A 378 EFDAGVPKKFVIDPH 392 (398)
T ss_dssp HHHHTCSCEEEECTT
T ss_pred HHhCCCceEEEEEeC
Confidence 998887799999875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=419.30 Aligned_cols=333 Identities=20% Similarity=0.262 Sum_probs=283.6
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCC---CccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF---PRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~---p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.++++++++++++.|+|+++||||||.++|||++|++++.|..+...+ |.++|||++| |+++|++ ++|+
T Consensus 1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~ 78 (357)
T 2b5w_A 1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE 78 (357)
T ss_dssp CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence 789999888877999999999999999999999999999999999886554456 8999999999 9999999 9999
Q ss_pred CCCEEEecCccC--CCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 88 VGDHVLPVFTGE--CGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 88 ~GdrV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
+||||++.+... |+.|.+|++|++++|.+..... +|+. ...|+|+||++++++.++++|
T Consensus 79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~------------------~~~G~~aey~~v~~~~~~~iP 139 (357)
T 2b5w_A 79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIV------------------GAHGYMSEFFTSPEKYLVRIP 139 (357)
T ss_dssp TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTB------------------EECCSCBSEEEEEGGGEEECC
T ss_pred CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCcc------------------CCCcceeeEEEEchHHeEECC
Confidence 999999998888 9999999999999998754320 0110 013699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCC------CeEEEEcCCHHHHHH-HHHH-HHcCCcEEEEEcCChh---HHH
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERG------SSVAVFGLGAVGLAA-AEGA-RIAGASRIIGVDRSSK---RFE 234 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~vlI~G~g~~G~~a-i~la-~~~g~~~vi~~~~~~~---~~~ 234 (380)
++++ + +|+++.+++|||+++ +.+++++| ++|||+|+|++|+++ +|+| |.+|+++|++++++++ |++
T Consensus 140 ~~~~-~-~aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~ 216 (357)
T 2b5w_A 140 RSQA-E-LGFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID 216 (357)
T ss_dssp GGGS-T-TGGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred CCcc-h-hhhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence 9999 5 456788999999997 67889999 999999999999999 9999 9999955999999999 999
Q ss_pred HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc--
Q 016933 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-- 312 (380)
Q Consensus 235 ~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-- 312 (380)
+++++|++++ ++++.+ +.+ ++++ ++++|+|||++|.+..+..++++++++ |+++.+|.... ....++...+
T Consensus 217 ~~~~lGa~~v-~~~~~~--~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~ 289 (357)
T 2b5w_A 217 IIEELDATYV-DSRQTP--VED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSD-WAFEVDAGAFHR 289 (357)
T ss_dssp HHHHTTCEEE-ETTTSC--GGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCC-CCCCCCHHHHHH
T ss_pred HHHHcCCccc-CCCccC--HHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCC-CCceecHHHHhH
Confidence 9999999999 887655 666 7666 558999999999977899999999997 99999998752 2233333333
Q ss_pred ---ccccEEEeeeecCCCCCCChHHHHHHHHcC--CCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecCC
Q 016933 313 ---LNERTLKGTFFGNYKPRTDLPSVVDMYMNK--QLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 380 (380)
Q Consensus 313 ---~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~~ 380 (380)
.+++++.|+..+. .+++++++++++++ ++ +.+++++.|+++++++||+.+ +..+|+||+++|
T Consensus 290 ~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~~~ 356 (357)
T 2b5w_A 290 EMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEFST 356 (357)
T ss_dssp HHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred HHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEecC
Confidence 5889999876432 35689999999999 76 666788999999999999988 455799999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-54 Score=404.69 Aligned_cols=339 Identities=22% Similarity=0.390 Sum_probs=278.9
Q ss_pred hhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|+|+++...+.++.+++++++.|+|++|||||||.++|||++|+.++.|..+...+|.++|||++|+|+++|+++++|++
T Consensus 15 mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~v 94 (366)
T 1yqd_A 15 VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV 94 (366)
T ss_dssp EEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred eeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCCC
Confidence 44555555444455999999999999999999999999999999999886655568999999999999999999999999
Q ss_pred CCEEEecCc-cCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 89 GDHVLPVFT-GECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 89 GdrV~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
||||++.+. .+||.|.+|++|++++|++.... ..|.. ..| ....|+|+||+++|.+.++++|++
T Consensus 95 GDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~~ 159 (366)
T 1yqd_A 95 GDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIY-HDG-------------TITYGGYSNHMVANERYIIRFPDN 159 (366)
T ss_dssp TCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCTT
T ss_pred CCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccc-cCC-------------CcCCCccccEEEEchhhEEECCCC
Confidence 999987553 68999999999999999655431 00100 000 112479999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCC-CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceEe
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPE-RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDFV 245 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~vi 245 (380)
+++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|+++++
T Consensus 160 ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~ 237 (366)
T 1yqd_A 160 MPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFL 237 (366)
T ss_dssp SCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEE
Confidence 999999999999999999964 46787 99999999999999999999999999 8999999999998887 89999999
Q ss_pred cCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 246 NTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
++.+. +.+++.+ +++|++||++|....+..++++++++ |+++.+|..... ..++... +.+++++.|+..+
T Consensus 238 ~~~~~-----~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~ 308 (366)
T 1yqd_A 238 VSRDQ-----EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEKP--LELPAFSLIAGRKIVAGSGIG 308 (366)
T ss_dssp ETTCH-----HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSSC--EEECHHHHHTTTCEEEECCSC
T ss_pred eccCH-----HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCCC--CCcCHHHHHhCCcEEEEecCC
Confidence 87652 2355554 37999999999866789999999997 999999986533 2233322 4488999987643
Q ss_pred CCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 325 NYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
. .+++.+++++++++++++. + +.|+|+++++||+.+++++. +|+||+++
T Consensus 309 ~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 358 (366)
T 1yqd_A 309 G---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG 358 (366)
T ss_dssp C---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred C---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence 2 2468899999999988764 4 79999999999999998876 79999864
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=411.75 Aligned_cols=343 Identities=17% Similarity=0.172 Sum_probs=289.4
Q ss_pred chhhhhhhhhhccC---------------CCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccC------------
Q 016933 6 GLILTCKAAVAWEA---------------GKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESK------------ 58 (380)
Q Consensus 6 ~~~~~~~a~~~~~~---------------~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~------------ 58 (380)
++|.||||+++.++ ++++++++++.|+|++|||||||.++|||++|++...+.
T Consensus 26 ~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g 105 (456)
T 3krt_A 26 PLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYG 105 (456)
T ss_dssp CCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHH
T ss_pred CCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcc
Confidence 46889999999876 234999999999999999999999999999998654321
Q ss_pred -CC----CCCCC-ccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCc
Q 016933 59 -GQ----TPLFP-RIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQS 132 (380)
Q Consensus 59 -~~----~~~~p-~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ 132 (380)
.. ...+| .++|||++|+|+++|+++++|++||||++.+. .|..|..|.++.++.|.+.... |+..
T Consensus 106 ~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~~---G~~~----- 176 (456)
T 3krt_A 106 RVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRIW---GFET----- 176 (456)
T ss_dssp TSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEET---TTTS-----
T ss_pred ccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCcccccc---ccCC-----
Confidence 10 12466 69999999999999999999999999998654 6889999999999999887765 5431
Q ss_pred ccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhc--cCCCCCCeEEEEcC-CHHHH
Q 016933 133 RFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV--AKPERGSSVAVFGL-GAVGL 209 (380)
Q Consensus 133 ~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vlI~G~-g~~G~ 209 (380)
..|+|+||++++.++++++|+++++++||++++++.|||+++... +++++|++|||+|+ |++|+
T Consensus 177 -------------~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~ 243 (456)
T 3krt_A 177 -------------NFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGS 243 (456)
T ss_dssp -------------SSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHH
T ss_pred -------------CCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHH
Confidence 136999999999999999999999999999999999999997654 78999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc---------------cHHHHHHHHhCC-CccEEEEcc
Q 016933 210 AAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR---------------PIQEVIAEMTNG-GVDRSVECT 273 (380)
Q Consensus 210 ~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~---------------~~~~~~~~~~~~-~~d~v~d~~ 273 (380)
+++|+|+.+|+ +|++++++++|+++++++|++.++++.+.+. .+.+.+++++++ ++|+|||++
T Consensus 244 ~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~ 322 (456)
T 3krt_A 244 YATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHP 322 (456)
T ss_dssp HHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECS
T ss_pred HHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 99999999999 8888889999999999999999999877541 245788888887 999999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceee
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITH 352 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (380)
|+ +.+..++++++++ |+++.+|...+. ...++.. .+.+++++.|+..+.. +++.++++++++|+++ +++++
T Consensus 323 G~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~ 394 (456)
T 3krt_A 323 GR-ETFGASVFVTRKG-GTITTCASTSGY-MHEYDNRYLWMSLKRIIGSHFANY---REAWEANRLIAKGRIH--PTLSK 394 (456)
T ss_dssp CH-HHHHHHHHHEEEE-EEEEESCCTTCS-EEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CCEEE
T ss_pred Cc-hhHHHHHHHhhCC-cEEEEEecCCCc-ccccCHHHHHhcCeEEEEeccCCH---HHHHHHHHHHHcCCcc--cceeE
Confidence 99 8899999999997 999999987532 2222222 2447889999875432 3577899999999875 45889
Q ss_pred eeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 353 RIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 353 ~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.|+|+++++|++.+.+++. +|+||.+.
T Consensus 395 ~~~l~~~~eA~~~l~~~~~~GKvvv~~~ 422 (456)
T 3krt_A 395 VYSLEDTGQAAYDVHRNLHQGKVGVLCL 422 (456)
T ss_dssp EEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred EEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 9999999999999998877 79998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-53 Score=391.56 Aligned_cols=319 Identities=25% Similarity=0.319 Sum_probs=275.7
Q ss_pred CCCccchhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEE
Q 016933 1 MSSTAGLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~ 78 (380)
|++ +.|.+|||+++.+++++ +++++++.|+|++|||||||.++|||++|+.++.|..+ ..+|.++|||++|+|++
T Consensus 1 M~~--~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~ 77 (334)
T 3qwb_A 1 MKC--TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVA 77 (334)
T ss_dssp ------CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEE
T ss_pred CCC--CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEE
Confidence 544 46788999999998876 89999999999999999999999999999999988665 45799999999999999
Q ss_pred eCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEe-
Q 016933 79 VGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH- 157 (380)
Q Consensus 79 vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~- 157 (380)
+|+++++|++||||++.. .|+|+||+.++
T Consensus 78 vG~~v~~~~~GdrV~~~~--------------------------------------------------~G~~aey~~v~~ 107 (334)
T 3qwb_A 78 KGKGVTNFEVGDQVAYIS--------------------------------------------------NSTFAQYSKISS 107 (334)
T ss_dssp ECTTCCSCCTTCEEEEEC--------------------------------------------------SSCSBSEEEEET
T ss_pred ECCCCCCCCCCCEEEEee--------------------------------------------------CCcceEEEEecC
Confidence 999999999999998541 36999999999
Q ss_pred ccceEeCCCCCCccc---hhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 158 SGCVAKINPLAPLDK---VCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 158 ~~~~~~~p~~~~~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
.+.++++|+++++++ |+++++.+.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|+
T Consensus 108 ~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~ 186 (334)
T 3qwb_A 108 QGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKL 186 (334)
T ss_dssp TSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred cceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 999999999999999 88899999999999878889999999999995 9999999999999999 899999999999
Q ss_pred HHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-
Q 016933 234 EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN- 311 (380)
Q Consensus 234 ~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~- 311 (380)
++++++|++.++++++.+ +.+.+++.+++ ++|++||++|. ..+..++++++++ |+++.+|..... ...++...
T Consensus 187 ~~~~~~ga~~~~~~~~~~--~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~ 261 (334)
T 3qwb_A 187 KIAKEYGAEYLINASKED--ILRQVLKFTNGKGVDASFDSVGK-DTFEISLAALKRK-GVFVSFGNASGL-IPPFSITRL 261 (334)
T ss_dssp HHHHHTTCSEEEETTTSC--HHHHHHHHTTTSCEEEEEECCGG-GGHHHHHHHEEEE-EEEEECCCTTCC-CCCBCGGGG
T ss_pred HHHHHcCCcEEEeCCCch--HHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEcCCCCC-CCCcchhhh
Confidence 999999999999988765 88899998877 89999999998 8899999999997 999999986532 22222222
Q ss_pred cccccEEEeeeecCCCCC-C----ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 312 VLNERTLKGTFFGNYKPR-T----DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 312 ~~~~~~i~g~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
+.+++++.++.++.+... + .++++++++++|++++. +++.|+++++++||+.+++++. +|+||++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q 334 (334)
T 3qwb_A 262 SPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ 334 (334)
T ss_dssp TTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred hhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 348899988765443221 1 24688999999988765 7899999999999999998877 699999864
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-53 Score=396.67 Aligned_cols=318 Identities=19% Similarity=0.234 Sum_probs=276.5
Q ss_pred cchhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCC
Q 016933 5 AGLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~ 81 (380)
+++|.||||+++.+++.+ +++++++.|+|++|||||||.++|||++|+..+.|..+. ..+|.++|||++|+|+++|+
T Consensus 23 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~ 102 (353)
T 4dup_A 23 MSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGP 102 (353)
T ss_dssp CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECT
T ss_pred CCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECC
Confidence 457889999999998876 999999999999999999999999999999999887653 35799999999999999999
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
++++|++||||+... ..|+|+||+.+|++.+
T Consensus 103 ~v~~~~vGdrV~~~~-------------------------------------------------~~G~~aey~~v~~~~~ 133 (353)
T 4dup_A 103 GVSGYAVGDKVCGLA-------------------------------------------------NGGAYAEYCLLPAGQI 133 (353)
T ss_dssp TCCSCCTTCEEEEEC-------------------------------------------------SSCCSBSEEEEEGGGE
T ss_pred CCCCCCCCCEEEEec-------------------------------------------------CCCceeeEEEEcHHHc
Confidence 999999999998541 1369999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG 240 (380)
+++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|
T Consensus 134 ~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lG 212 (353)
T 4dup_A 134 LPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLG 212 (353)
T ss_dssp EECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcC
Confidence 9999999999999999999999999888899999999999965 9999999999999999 8999999999999999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEE
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLK 319 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~ 319 (380)
++.++++++.+ +.+.+++.+++++|++||++|+ +.+..++++++++ |+++.+|.........++... +.+++++.
T Consensus 213 a~~~~~~~~~~--~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~ 288 (353)
T 4dup_A 213 AKRGINYRSED--FAAVIKAETGQGVDIILDMIGA-AYFERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVT 288 (353)
T ss_dssp CSEEEETTTSC--HHHHHHHHHSSCEEEEEESCCG-GGHHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEE
T ss_pred CCEEEeCCchH--HHHHHHHHhCCCceEEEECCCH-HHHHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEE
Confidence 99999988766 8888888885599999999998 6889999999997 999999987644322133332 34899999
Q ss_pred eeeecCCCCCC-------ChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 320 GTFFGNYKPRT-------DLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 320 g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
|+..+.....+ .++++++++++++++ +++++.|+++++++||+.+++++. +|+||++
T Consensus 289 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~ 353 (353)
T 4dup_A 289 GSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA--PVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV 353 (353)
T ss_dssp ECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 98765432110 167889999999865 568899999999999999999887 6999975
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=395.83 Aligned_cols=330 Identities=18% Similarity=0.182 Sum_probs=269.5
Q ss_pred CCC-ccchhhhhhhhhhccCCCCeEEE-EeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEE
Q 016933 1 MSS-TAGLILTCKAAVAWEAGKPLIIQ-DVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 1 m~~-~~~~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~ 78 (380)
|++ |+++|.+|||+++.+++. ++++ +++.|+|++|||||||.+++||++|+.++.+. ..+|.++|||++|+|++
T Consensus 1 ~~~~tm~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~ 76 (371)
T 3gqv_A 1 MGDQPFIPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVA 76 (371)
T ss_dssp ---CCCCCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEE
T ss_pred CCCCCCCCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEE
Confidence 453 456788999999988876 9998 99999999999999999999999999988662 34689999999999999
Q ss_pred eCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 79 VGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 79 vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
+|+++++|++||||+.. |..|+.+. ...|+|+||++++.
T Consensus 77 vG~~v~~~~~GdrV~~~-------~~~~~~~~----------------------------------~~~G~~aey~~v~~ 115 (371)
T 3gqv_A 77 VGSDVTHIQVGDRVYGA-------QNEMCPRT----------------------------------PDQGAFSQYTVTRG 115 (371)
T ss_dssp ECTTCCSCCTTCEEEEE-------CCTTCTTC----------------------------------TTCCSSBSEEECCT
T ss_pred eCCCCCCCCCCCEEEEe-------ccCCCCCC----------------------------------CCCCcCcCeEEEch
Confidence 99999999999999744 44443321 01369999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhc-cCC-----------CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEE
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNV-AKP-----------ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIG 225 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~ 225 (380)
+.++++|+++++++||++++++.|||+++.+. .++ ++|++|||+|+ |++|++++|+|+.+|+ +|++
T Consensus 116 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~ 194 (371)
T 3gqv_A 116 RVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIA 194 (371)
T ss_dssp TCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEE
T ss_pred hheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEE
Confidence 99999999999999999999999999998776 543 89999999998 9999999999999999 8888
Q ss_pred EcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHh-hcCCcEEEEEcCCCCC--
Q 016933 226 VDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECV-HDGWGVAVLVGVPSKD-- 302 (380)
Q Consensus 226 ~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~-- 302 (380)
+. +++|+++++++|+++++|+++.+ +.+.+++++++++|++||++|++..+..+++++ +++ |+++.+|.....
T Consensus 195 ~~-~~~~~~~~~~lGa~~vi~~~~~~--~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~ 270 (371)
T 3gqv_A 195 TC-SPHNFDLAKSRGAEEVFDYRAPN--LAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAA 270 (371)
T ss_dssp EE-CGGGHHHHHHTTCSEEEETTSTT--HHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---
T ss_pred Ee-CHHHHHHHHHcCCcEEEECCCch--HHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccc
Confidence 85 78999999999999999998776 889999999888999999999988899999999 586 999999965421
Q ss_pred ----ceeecc--ccccccccEEEeeeecCCCCC------CChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC
Q 016933 303 ----AVFMTK--PINVLNERTLKGTFFGNYKPR------TDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370 (380)
Q Consensus 303 ----~~~~~~--~~~~~~~~~i~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~ 370 (380)
...... ...+.+++++.|+........ +.+.++++++++|++++.+++++.|+++++++||+.+.+++
T Consensus 271 ~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~ 350 (371)
T 3gqv_A 271 TRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGE 350 (371)
T ss_dssp CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTC
T ss_pred cccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCC
Confidence 112211 122347888887643221110 12347889999999999888888899999999999999987
Q ss_pred c-e-eEEEecCC
Q 016933 371 G-L-RCIISMED 380 (380)
Q Consensus 371 ~-~-Kvvi~~~~ 380 (380)
. + |+|++++|
T Consensus 351 ~~Gkkvvv~~~~ 362 (371)
T 3gqv_A 351 LSGEKLVVRLEG 362 (371)
T ss_dssp CSSCEEEEEECC
T ss_pred CceEEEEEEeCC
Confidence 6 4 88888764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-53 Score=407.52 Aligned_cols=344 Identities=17% Similarity=0.169 Sum_probs=286.0
Q ss_pred cchhhhhhhhhhccCC-------------CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhc-------------c-
Q 016933 5 AGLILTCKAAVAWEAG-------------KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-------------S- 57 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~-------------~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~-------------g- 57 (380)
.++|.||||+++..++ +++++++++.|+|++|||||||.++|||++|++... +
T Consensus 19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~ 98 (447)
T 4a0s_A 19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR 98 (447)
T ss_dssp SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred cCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence 3578899999999887 349999999999999999999999999999975321 1
Q ss_pred --CCC-CCCCC-ccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcc
Q 016933 58 --KGQ-TPLFP-RIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSR 133 (380)
Q Consensus 58 --~~~-~~~~p-~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~ 133 (380)
... ...+| .++|||++|+|+++|++|++|++||||++.+...|+.|. |.++.++.|.+.... |+..
T Consensus 99 ~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~~---G~~~------ 168 (447)
T 4a0s_A 99 QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRAW---GFET------ 168 (447)
T ss_dssp TCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEET---TTTS------
T ss_pred cCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-ccccccccccccccc---cccC------
Confidence 111 12456 699999999999999999999999999999988887776 556789999877665 5431
Q ss_pred cccCCCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhh--ccCCCCCCeEEEEcC-CHHHHH
Q 016933 134 FSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN--VAKPERGSSVAVFGL-GAVGLA 210 (380)
Q Consensus 134 ~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~G~-g~~G~~ 210 (380)
..|+|+||++++.++++++|+++++++||++++++.|||+++.. .+++++|++|||+|+ |++|++
T Consensus 169 ------------~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~ 236 (447)
T 4a0s_A 169 ------------NFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY 236 (447)
T ss_dssp ------------SSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred ------------CCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHH
Confidence 13699999999999999999999999999999999999999764 488999999999998 999999
Q ss_pred HHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC----------------ccHHHHHHHHhCCCccEEEEccc
Q 016933 211 AAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD----------------RPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 211 ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~----------------~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++|+|+.+|+ +|++++++++|+++++++|++.++++.+.+ ..+.+.+++.+++++|++||++|
T Consensus 237 a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G 315 (447)
T 4a0s_A 237 AIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG 315 (447)
T ss_dssp HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSC
T ss_pred HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCC
Confidence 9999999999 888888999999999999999998765432 12367788888559999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeee
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHR 353 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (380)
. ..+..++++++++ |+++.+|...+. ...+... .+.+++++.|+..+. .+++.++++++++|+++ +++++.
T Consensus 316 ~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~ 387 (447)
T 4a0s_A 316 R-VTFGLSVIVARRG-GTVVTCGSSSGY-LHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFESGAVV--PAMSAV 387 (447)
T ss_dssp H-HHHHHHHHHSCTT-CEEEESCCTTCS-EEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEEEE
T ss_pred c-hHHHHHHHHHhcC-CEEEEEecCCCc-ccccCHHHHHhCCCEEEecCCCC---HHHHHHHHHHHHcCCcc--cceeEE
Confidence 8 6889999999997 999999987532 2222222 244888999876443 24578899999999875 468899
Q ss_pred eccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 354 IPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 354 ~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
|+|+++++||+.+.+++. +|+||.+.
T Consensus 388 ~~l~~~~~A~~~~~~~~~~GKvvv~~~ 414 (447)
T 4a0s_A 388 YPLAEAAEACRVVQTSRQVGKVAVLCM 414 (447)
T ss_dssp EEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred EcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 999999999999988877 69998864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=391.34 Aligned_cols=314 Identities=23% Similarity=0.264 Sum_probs=267.1
Q ss_pred cchhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCC
Q 016933 5 AGLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~ 81 (380)
++.|.+|||+++.++++| +++++++.|+|++|||||||.++|||++|+.++.|.++. ..+|.++|||++|+|+++|+
T Consensus 16 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~ 95 (342)
T 4eye_A 16 TQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPE 95 (342)
T ss_dssp --CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCT
T ss_pred ccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECC
Confidence 356788999999988777 999999999999999999999999999999999887653 47899999999999999999
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
+++ |++||||++.. ..|+|+||+.++.+.+
T Consensus 96 ~v~-~~vGDrV~~~~-------------------------------------------------~~G~~aey~~v~~~~~ 125 (342)
T 4eye_A 96 GSG-IKPGDRVMAFN-------------------------------------------------FIGGYAERVAVAPSNI 125 (342)
T ss_dssp TSS-CCTTCEEEEEC-------------------------------------------------SSCCSBSEEEECGGGE
T ss_pred CCC-CCCCCEEEEec-------------------------------------------------CCCcceEEEEEcHHHe
Confidence 999 99999998541 1269999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG 240 (380)
+++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|
T Consensus 126 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g 204 (342)
T 4eye_A 126 LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVG 204 (342)
T ss_dssp EECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHT
T ss_pred EECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcC
Confidence 9999999999999999999999999878899999999999998 9999999999999999 9999999999999999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEE
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTL 318 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i 318 (380)
++.+++++ .+ +.+.+++.+++ ++|++||++|+ +.+..++++++++ |+++.+|...+. ....+.. .+.+++++
T Consensus 205 a~~v~~~~-~~--~~~~v~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i 278 (342)
T 4eye_A 205 ADIVLPLE-EG--WAKAVREATGGAGVDMVVDPIGG-PAFDDAVRTLASE-GRLLVVGFAAGG-IPTIKVNRLLLRNASL 278 (342)
T ss_dssp CSEEEESS-TT--HHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEE-EEEEEC-----------CCCCGGGTTCEE
T ss_pred CcEEecCc-hh--HHHHHHHHhCCCCceEEEECCch-hHHHHHHHhhcCC-CEEEEEEccCCC-CCccCHHHHhhcCCEE
Confidence 99999887 44 88899999888 99999999998 6899999999997 999999976532 2222222 34589999
Q ss_pred EeeeecCCC---C---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 319 KGTFFGNYK---P---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 319 ~g~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.|+..+.+. . .+.+.+++++++++ + .+++++.|+++++++||+.+.+++. +|+||++
T Consensus 279 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P 342 (342)
T 4eye_A 279 IGVAWGEFLRTHADYLYETQAGLEKLVAEG-M--RPPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342 (342)
T ss_dssp EECCHHHHHHHCTTHHHHHHHHHHHHHHTT-C--CCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred EEEehhhhhhcCHHHHHHHHHHHHHHHHcC-C--CCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 998754321 1 13478899999999 4 4568899999999999999999887 6999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=402.70 Aligned_cols=333 Identities=19% Similarity=0.218 Sum_probs=275.4
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCC-CeEEEEEeeeecCcccchhhcc--CCCCCCC---CccccccccEEEEEeCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQA-MEVRIKIKYTSLCRTDLYFWES--KGQTPLF---PRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~-~eVlV~v~~~~l~~~D~~~~~g--~~~~~~~---p~v~G~e~vG~V~~vG~~v~ 84 (380)
|||+++.++++++++++++.|+|++ +||||||.++|||++|+.++.| ..+...+ |.++|||++|+|++ ++ +
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~ 77 (366)
T 2cdc_A 1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H 77 (366)
T ss_dssp CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence 7899998888679999999999999 9999999999999999999988 4443456 99999999999999 67 8
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
+|++||||++.+..+||.|.+|++|++++|++.... ..|... ..|+|+||++++++.++++
T Consensus 78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~g~~~------------------~~G~~aey~~v~~~~~~~i 138 (366)
T 2cdc_A 78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGIHK------------------MDGFMREWWYDDPKYLVKI 138 (366)
T ss_dssp SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCE-EETTBE------------------ECCSCBSEEEECGGGEEEE
T ss_pred CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcc-cCCccC------------------CCCceeEEEEechHHeEEC
Confidence 999999999999999999999999999999865431 001100 1369999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhh--h--ccCCC--C-------CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATL--N--VAKPE--R-------GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS- 230 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~- 230 (380)
|++++ ++|+ ++.+++|||+++. + .++++ + |++|||+|+|++|++++|+|+.+|+ +|+++++++
T Consensus 139 P~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~ 215 (366)
T 2cdc_A 139 PKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP 215 (366)
T ss_dssp CGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred cCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence 99999 7764 7779999999976 4 78888 8 9999999999999999999999999 999999998
Q ss_pred --hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhH-HHHHHHhhcCCcEEEEEcCCCCCceeec
Q 016933 231 --KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNM-ISAFECVHDGWGVAVLVGVPSKDAVFMT 307 (380)
Q Consensus 231 --~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~~~~~~~~ 307 (380)
++.++++++|++.+ + .+ + +.+.+.+ +.+++|++||++|.+..+ ..++++++++ |+++.+|..... ...+
T Consensus 216 ~~~~~~~~~~~ga~~v-~-~~-~--~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~ 287 (366)
T 2cdc_A 216 TEVEQTVIEETKTNYY-N-SS-N--GYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSG-SVPL 287 (366)
T ss_dssp CHHHHHHHHHHTCEEE-E-CT-T--CSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCSC-EEEE
T ss_pred chHHHHHHHHhCCcee-c-hH-H--HHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCCC-cccc
Confidence 99999999999988 7 54 3 5566666 446899999999986678 9999999997 999999987543 2333
Q ss_pred ccc----ccccccEEEeeeecCCCCCCChHHHHHHHHcCCCC----CCCceeeeeccccHHHHHHH--HHcCCceeEEEe
Q 016933 308 KPI----NVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE----LEKFITHRIPFSEINKAFEY--MVKGEGLRCIIS 377 (380)
Q Consensus 308 ~~~----~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~a~~~--l~~~~~~Kvvi~ 377 (380)
+.. .+.+++++.|+..+ ..++++++++++++|+++ +.+++++.|+|+++++||+. ++++..+|+||+
T Consensus 288 ~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~ 364 (366)
T 2cdc_A 288 DYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRIL 364 (366)
T ss_dssp EHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEE
T ss_pred ChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEe
Confidence 332 24588999987643 235689999999999876 67778999999999999998 554444799998
Q ss_pred cC
Q 016933 378 ME 379 (380)
Q Consensus 378 ~~ 379 (380)
++
T Consensus 365 ~~ 366 (366)
T 2cdc_A 365 WE 366 (366)
T ss_dssp CC
T ss_pred cC
Confidence 74
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=388.58 Aligned_cols=316 Identities=21% Similarity=0.253 Sum_probs=269.0
Q ss_pred hhhhhhhhccCCCC---eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCC
Q 016933 9 LTCKAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 9 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
++|||+++.++++| +++++++.|+|++|||||||.++|||++|+..+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~ 82 (340)
T 3gms_A 3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS 82 (340)
T ss_dssp CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence 57999999999987 899999999999999999999999999999999887653 57899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
+|++||||+... +.|+|+||+++|.+.++++
T Consensus 83 ~~~vGdrV~~~~-------------------------------------------------~~G~~aey~~v~~~~~~~v 113 (340)
T 3gms_A 83 RELIGKRVLPLR-------------------------------------------------GEGTWQEYVKTSADFVVPI 113 (340)
T ss_dssp GGGTTCEEEECS-------------------------------------------------SSCSSBSEEEEEGGGEEEC
T ss_pred CCCCCCEEEecC-------------------------------------------------CCccceeEEEcCHHHeEEC
Confidence 999999998431 1369999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
|+++++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+++
T Consensus 114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~ 192 (340)
T 3gms_A 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY 192 (340)
T ss_dssp CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence 9999999999999999999999888999999999999998 6999999999999999 9999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~ 322 (380)
++++.+.+ +.+.+++++++ ++|++||++|.+ ....++++++++ |+++.+|...+. ..+........++.+..+.
T Consensus 193 ~~~~~~~~--~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~~~~~ 267 (340)
T 3gms_A 193 VIDTSTAP--LYETVMELTNGIGADAAIDSIGGP-DGNELAFSLRPN-GHFLTIGLLSGI-QVNWAEIVTKAKVHANIFH 267 (340)
T ss_dssp EEETTTSC--HHHHHHHHTTTSCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTSC-CCCHHHHHHTSCCEEEECC
T ss_pred EEeCCccc--HHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHHhcCC-CEEEEEeecCCC-CCCHHHhhhcccceEEEEE
Confidence 99987765 88899999887 999999999984 456677999997 999999986532 2222111111334444332
Q ss_pred ecCC-------CCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC-c-eeEEEecCC
Q 016933 323 FGNY-------KPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE-G-LRCIISMED 380 (380)
Q Consensus 323 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~-~-~Kvvi~~~~ 380 (380)
+..+ ...+.++++++++++|++++.. +++.|+++++++||+.+.+++ . +|+++++.|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~ 333 (340)
T 3gms_A 268 LRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE 333 (340)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred ehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 2111 1124688999999999998764 789999999999999999987 4 799999763
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-52 Score=386.79 Aligned_cols=318 Identities=22% Similarity=0.265 Sum_probs=267.4
Q ss_pred CCCccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC--CCCCCccccccccEEEEE
Q 016933 1 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--TPLFPRIFGHEAAGVVES 78 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--~~~~p~v~G~e~vG~V~~ 78 (380)
||. .|.+|||+++.++++++++++++.|+|++|||||||.+++||++|+.++.|..+ ...+|.++|||++|+|++
T Consensus 1 Ms~---~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~ 77 (343)
T 3gaz_A 1 MSL---TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVA 77 (343)
T ss_dssp --------CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEE
T ss_pred CCC---CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEE
Confidence 664 467899999999998899999999999999999999999999999999888543 256899999999999999
Q ss_pred eCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 79 VGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 79 vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
+|+++++|++||||+.+.. |.. ...|+|+||+.+++
T Consensus 78 vG~~v~~~~vGdrV~~~~~--------------------------g~~------------------~~~G~~aey~~v~~ 113 (343)
T 3gaz_A 78 VGPEVDSFRVGDAVFGLTG--------------------------GVG------------------GLQGTHAQFAAVDA 113 (343)
T ss_dssp ECTTCCSCCTTCEEEEECC--------------------------SST------------------TCCCSSBSEEEEEG
T ss_pred ECCCCCCCCCCCEEEEEeC--------------------------CCC------------------CCCcceeeEEEecH
Confidence 9999999999999986421 100 01369999999999
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~ 237 (380)
+.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++ .+++++++++
T Consensus 114 ~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~ 191 (343)
T 3gaz_A 114 RLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVR 191 (343)
T ss_dssp GGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHH
T ss_pred HHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHH
Confidence 9999999999999999999999999999878899999999999995 9999999999999999 89999 8999999999
Q ss_pred hcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccccccc
Q 016933 238 KFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNER 316 (380)
Q Consensus 238 ~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 316 (380)
++|++. ++ .+.+ +.+.+++.+++ ++|++||++|+ +.+..++++++++ |+++.+|.... ++. ...+.+++
T Consensus 192 ~lGa~~-i~-~~~~--~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~---~~~-~~~~~~~~ 261 (343)
T 3gaz_A 192 DLGATP-ID-ASRE--PEDYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRF-GHVVSCLGWGT---HKL-APLSFKQA 261 (343)
T ss_dssp HHTSEE-EE-TTSC--HHHHHHHHHTTSCEEEEEESSCT-HHHHHHHHHEEEE-EEEEESCCCSC---CCC-HHHHHTTC
T ss_pred HcCCCE-ec-cCCC--HHHHHHHHhcCCCceEEEECCCc-HHHHHHHHHHhcC-CeEEEEcccCc---ccc-chhhhcCc
Confidence 999998 76 4443 88888888887 99999999998 7899999999997 99999987641 111 11234889
Q ss_pred EEEeeeecCC--------CCCCChHHHHHHHHcCCCCCCCcee-eeeccccHHHHHHHHHcCCc-----eeEEEecC
Q 016933 317 TLKGTFFGNY--------KPRTDLPSVVDMYMNKQLELEKFIT-HRIPFSEINKAFEYMVKGEG-----LRCIISME 379 (380)
Q Consensus 317 ~i~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~a~~~l~~~~~-----~Kvvi~~~ 379 (380)
++.+++.... ...+.++++++++++|++++ +++ +.|+++++++||+.+.+++. +|+|++++
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~ 336 (343)
T 3gaz_A 262 TYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAP--RLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE 336 (343)
T ss_dssp EEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCC--CBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred EEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCccc--CccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence 9988754211 01145889999999998764 477 79999999999999998765 59999875
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=380.47 Aligned_cols=312 Identities=22% Similarity=0.276 Sum_probs=270.2
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEV 88 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~ 88 (380)
|||+++.+++++ +++++++.|+|++|||||||.++|||++|+.++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus 2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~ 81 (325)
T 3jyn_A 2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV 81 (325)
T ss_dssp EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence 899999998887 999999999999999999999999999999999997776678999999999999999999999999
Q ss_pred CCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 89 GDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 89 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
||||+.... ..|+|+||+.++.+.++++|+++
T Consensus 82 GdrV~~~~~------------------------------------------------~~G~~aey~~v~~~~~~~~P~~~ 113 (325)
T 3jyn_A 82 GDRVAYGTG------------------------------------------------PLGAYSEVHVLPEANLVKLADSV 113 (325)
T ss_dssp TCEEEESSS------------------------------------------------SSCCSBSEEEEEGGGEEECCTTS
T ss_pred CCEEEEecC------------------------------------------------CCccccceEEecHHHeEECCCCC
Confidence 999985420 13699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++||++++.+.|+|+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|++++++++++++++++|+++++++
T Consensus 114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~ 192 (325)
T 3jyn_A 114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDY 192 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 999999999999999999888899999999999995 9999999999999999 99999999999999999999999998
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccc-c-ccEEEeeeec
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVL-N-ERTLKGTFFG 324 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~-~~~i~g~~~~ 324 (380)
++.+ +.+.+++.+++ ++|++||++|. +.+..++++++++ |+++.+|...+.. ..++...+. + ++++.+..++
T Consensus 193 ~~~~--~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 267 (325)
T 3jyn_A 193 SHED--VAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPR-GLVVSFGNASGPV-SGVNLGILAQKDSVYVTRPTLG 267 (325)
T ss_dssp TTSC--HHHHHHHHTTTCCEEEEEESSCG-GGHHHHHTTEEEE-EEEEECCCTTCCC-CSCCTHHHHHTTSCEEECCCHH
T ss_pred CCcc--HHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhcCC-CEEEEEecCCCCC-CCCCHHHHhhcCcEEEEeeeee
Confidence 8765 88899999887 89999999998 8899999999997 9999999875331 122222222 3 5666654433
Q ss_pred CCC-CCCCh----HHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 325 NYK-PRTDL----PSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 325 ~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.+. ..+++ +++++++++|++++. +++.|+++++++||+.+++++. +|+||.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p 325 (325)
T 3jyn_A 268 SYANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIELSARRTTGSTILIP 325 (325)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred eecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 222 22333 478999999988776 6899999999999999999887 6999864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-51 Score=381.96 Aligned_cols=314 Identities=18% Similarity=0.151 Sum_probs=265.3
Q ss_pred hhhhhhhhccCC-----CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 9 LTCKAAVAWEAG-----KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 9 ~~~~a~~~~~~~-----~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
|||||+++.++| +.+++++++.|+|++|||||||.+++||++|+..+.|. ...+|.++|||++|+|+++|+++
T Consensus 1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v 78 (346)
T 3fbg_A 1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV 78 (346)
T ss_dssp -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence 579999999876 34999999999999999999999999999999988875 35689999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
++|++||||+.... ....|+|+||++++.+.+++
T Consensus 79 ~~~~~GdrV~~~~~----------------------------------------------~~~~G~~aey~~v~~~~~~~ 112 (346)
T 3fbg_A 79 TMFNQGDIVYYSGS----------------------------------------------PDQNGSNAEYQLINERLVAK 112 (346)
T ss_dssp CSCCTTCEEEECCC----------------------------------------------TTSCCSSBSEEEEEGGGEEE
T ss_pred CcCCCCCEEEEcCC----------------------------------------------CCCCcceeEEEEEChHHeEE
Confidence 99999999985421 01136999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCC------CCCeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPE------RGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~------~g~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~ 236 (380)
+|+++++++||++++++.|||+++.+.++++ +|++|||+| +|++|++++|+|+.+|+ +|+++++++++++++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~ 191 (346)
T 3fbg_A 113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT 191 (346)
T ss_dssp CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 9999999999999999999999988889998 999999996 59999999999999999 999999999999999
Q ss_pred HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccccccc
Q 016933 237 KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNER 316 (380)
Q Consensus 237 ~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~ 316 (380)
+++|+++++++++ + +.+.+++..++++|++|||+|++..+..++++++++ |+++.++... ..++... ...+++
T Consensus 192 ~~lGa~~vi~~~~-~--~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~~--~~~~~~~-~~~~~~ 264 (346)
T 3fbg_A 192 KKMGADIVLNHKE-S--LLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAFE--NDQDLNA-LKPKSL 264 (346)
T ss_dssp HHHTCSEEECTTS-C--HHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCCS--SCBCGGG-GTTTTC
T ss_pred HhcCCcEEEECCc-c--HHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCCC--CCCcccc-ccccce
Confidence 9999999999875 2 788888884449999999999977789999999997 9999887532 2222221 233788
Q ss_pred EEEeeeecCCCC---------CCChHHHHHHHHcCCCCCCCceeeee---ccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 317 TLKGTFFGNYKP---------RTDLPSVVDMYMNKQLELEKFITHRI---PFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 317 ~i~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
++.++....... .+.++++++++++|++++ .+++.| +++++++||+.+++++. +|+||++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~ 339 (346)
T 3fbg_A 265 SFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQP--TTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE 339 (346)
T ss_dssp EEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCC--CEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred EEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEEC--CccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence 888865432111 134788999999998754 477777 99999999999999887 799999863
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=382.96 Aligned_cols=322 Identities=21% Similarity=0.297 Sum_probs=267.3
Q ss_pred ccchhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeC
Q 016933 4 TAGLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG 80 (380)
+.+.+.+|||+++.+++.+ +++++++.|+|+++||||||.++|||++|+.++.|.++. ..+|.++|||++|+|+++|
T Consensus 16 ~~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG 95 (354)
T 2j8z_A 16 ENLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELG 95 (354)
T ss_dssp -----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEEC
T ss_pred cccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEEC
Confidence 3456778999999888864 889999999999999999999999999999998886543 3478999999999999999
Q ss_pred CCC-CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 81 EGV-SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 81 ~~v-~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
+++ ++|++||||+... ..|+|+||++++++
T Consensus 96 ~~v~~~~~vGdrV~~~~-------------------------------------------------~~G~~aey~~v~~~ 126 (354)
T 2j8z_A 96 PGCQGHWKIGDTAMALL-------------------------------------------------PGGGQAQYVTVPEG 126 (354)
T ss_dssp SCC--CCCTTCEEEEEC-------------------------------------------------SSCCSBSEEEEEGG
T ss_pred CCcCCCCCCCCEEEEec-------------------------------------------------CCCcceeEEEeCHH
Confidence 999 9999999998531 12589999999999
Q ss_pred ceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 160 CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 160 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
.++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.+++
T Consensus 127 ~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~ 205 (354)
T 2j8z_A 127 LLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK 205 (354)
T ss_dssp GEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred HcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999878899999999999995 9999999999999999 89999999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cc-cccc
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-IN-VLNE 315 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~-~~~~ 315 (380)
+|++.++++.+.+ +.+.+.+.+++ ++|++||++|+ ..+..++++++++ |+++.+|...+. ...++. .. +.++
T Consensus 206 ~g~~~~~~~~~~~--~~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~ 280 (354)
T 2j8z_A 206 LGAAAGFNYKKED--FSEATLKFTKGAGVNLILDCIGG-SYWEKNVNCLALD-GRWVLYGLMGGG-DINGPLFSKLLFKR 280 (354)
T ss_dssp HTCSEEEETTTSC--HHHHHHHHTTTSCEEEEEESSCG-GGHHHHHHHEEEE-EEEEECCCTTCS-CCCSCHHHHHHHTT
T ss_pred cCCcEEEecCChH--HHHHHHHHhcCCCceEEEECCCc-hHHHHHHHhccCC-CEEEEEeccCCC-ccCCChhHHHHhCC
Confidence 9999999887655 88888888776 89999999998 5889999999997 999999986532 223333 22 3488
Q ss_pred cEEEeeeecCCCCCC-------ChHHHHHHHHcC-CCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 316 RTLKGTFFGNYKPRT-------DLPSVVDMYMNK-QLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 316 ~~i~g~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
+++.|+......... .++++++++++| ++.+.+++++.|+++++++||+.+.+++. +|+||++++
T Consensus 281 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 354 (354)
T 2j8z_A 281 GSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ 354 (354)
T ss_dssp CEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred CEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 999997654321100 123577788888 44456678999999999999999988776 799998863
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=384.36 Aligned_cols=314 Identities=22% Similarity=0.303 Sum_probs=259.5
Q ss_pred hhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCC
Q 016933 9 LTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 9 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|+|||+++.+++++ +++++++.|+|++|||||||.+++||++|++++.|..+ ...+|.++|||++|+|+++|+++++
T Consensus 2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~ 81 (349)
T 4a27_A 2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG 81 (349)
T ss_dssp CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence 67999999998864 99999999999999999999999999999999998754 3578999999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||+... .+|+|+||+.++.+.++++|
T Consensus 82 ~~~GdrV~~~~-------------------------------------------------~~G~~aey~~v~~~~~~~iP 112 (349)
T 4a27_A 82 YEIGDRVMAFV-------------------------------------------------NYNAWAEVVCTPVEFVYKIP 112 (349)
T ss_dssp CCTTCEEEEEC-------------------------------------------------SSCCSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEec-------------------------------------------------CCCcceEEEEecHHHeEECC
Confidence 99999998542 13689999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF 244 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v 244 (380)
+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|..+|++++ ++++.++++ +|++++
T Consensus 113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~ 190 (349)
T 4a27_A 113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL 190 (349)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence 999999999999999999999888899999999999998 99999999999999654888886 678888888 999999
Q ss_pred ecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce---------------eeccc
Q 016933 245 VNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV---------------FMTKP 309 (380)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~---------------~~~~~ 309 (380)
++ .+.+ +.+.+++++++++|++|||+|+ +.+..++++++++ |+++++|....... .....
T Consensus 191 ~~-~~~~--~~~~~~~~~~~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (349)
T 4a27_A 191 FD-RNAD--YVQEVKRISAEGVDIVLDCLCG-DNTGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNP 265 (349)
T ss_dssp EE-TTSC--HHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------CH
T ss_pred Ec-CCcc--HHHHHHHhcCCCceEEEECCCc-hhHHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccCH
Confidence 98 4444 8888998887799999999998 5568999999997 99999997532111 11222
Q ss_pred cc-cccccEEEeeeecCCCC--------CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 310 IN-VLNERTLKGTFFGNYKP--------RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 310 ~~-~~~~~~i~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.. +.+++++.|+.+..+.. .++++++++++++|+++ +++++.|+++++++||+.+.+++. +|+||+++
T Consensus 266 ~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~ 343 (349)
T 4a27_A 266 IKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK--PVVDSLWALEEVKEAMQRIHDRGNIGKLILDVE 343 (349)
T ss_dssp HHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCC--CCEEEEECGGGHHHHHHHHHTTCCSSEEEEETT
T ss_pred HHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCcc--ccccceECHHHHHHHHHHHHhCCCCceEEEecC
Confidence 22 33788898876532111 34688999999999875 568899999999999999998877 69999986
Q ss_pred C
Q 016933 380 D 380 (380)
Q Consensus 380 ~ 380 (380)
+
T Consensus 344 ~ 344 (349)
T 4a27_A 344 K 344 (349)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=381.89 Aligned_cols=315 Identities=17% Similarity=0.186 Sum_probs=265.4
Q ss_pred hhhhhhhhhccC---CCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 8 ILTCKAAVAWEA---GKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 8 ~~~~~a~~~~~~---~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
.++|||+++.++ +.+ +++++++.|+|++|||||||.++|||++|+.++.|..+...+|.++|||++|+|+++|++
T Consensus 20 m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~ 99 (363)
T 4dvj_A 20 FQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGPD 99 (363)
T ss_dssp CCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEECTT
T ss_pred hheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeCCC
Confidence 457999999876 333 999999999999999999999999999999999987766778999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||+.... ....|+|+||++++.+.++
T Consensus 100 v~~~~vGdrV~~~~~----------------------------------------------~~~~G~~aey~~v~~~~~~ 133 (363)
T 4dvj_A 100 VTLFRPGDEVFYAGS----------------------------------------------IIRPGTNAEFHLVDERIVG 133 (363)
T ss_dssp CCSCCTTCEEEECCC----------------------------------------------TTSCCSCBSEEEEEGGGCE
T ss_pred CCCCCCCCEEEEccC----------------------------------------------CCCCccceEEEEeCHHHee
Confidence 999999999985421 0113699999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCC-----CCCeEEEEc-CCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHH
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPE-----RGSSVAVFG-LGAVGLAAAEGARIA-GASRIIGVDRSSKRFEE 235 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-----~g~~vlI~G-~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~ 235 (380)
++|+++++++||++++++.|||+++.+.++++ +|++|||+| +|++|++++|+||.+ |+ +|++++++++|+++
T Consensus 134 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~ 212 (363)
T 4dvj_A 134 RKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEW 212 (363)
T ss_dssp ECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHH
T ss_pred ECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence 99999999999999999999999988888888 899999999 599999999999985 77 99999999999999
Q ss_pred HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccc
Q 016933 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNE 315 (380)
Q Consensus 236 ~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~ 315 (380)
++++|+++++++.+ + +.+.++++.++++|++|||+|++..+..++++++++ |+++.+|... .++... ...++
T Consensus 213 ~~~lGad~vi~~~~-~--~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~---~~~~~~-~~~k~ 284 (363)
T 4dvj_A 213 VKSLGAHHVIDHSK-P--LAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDDPS---AFDIML-FKRKA 284 (363)
T ss_dssp HHHTTCSEEECTTS-C--HHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSCCS---SCCGGG-GTTTT
T ss_pred HHHcCCCEEEeCCC-C--HHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECCCC---ccchHH-Hhhcc
Confidence 99999999999865 3 788888875559999999999977899999999997 9999996532 222211 23478
Q ss_pred cEEEeeeecCC-----CC----CCChHHHHHHHHcCCCCCCCceeeee---ccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 316 RTLKGTFFGNY-----KP----RTDLPSVVDMYMNKQLELEKFITHRI---PFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 316 ~~i~g~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
+++.++..... .+ .+.++++++++++|++++. +++.+ +++++++||+.+.+++. +|+||++.
T Consensus 285 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~ 359 (363)
T 4dvj_A 285 VSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTT--LTNRLSPINAANLKQAHALVESGTARGKVVIEGF 359 (363)
T ss_dssp CEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCC--EEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred ceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeecc--ccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence 88888654321 01 1347889999999987653 56655 99999999999999887 69999875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=390.10 Aligned_cols=321 Identities=14% Similarity=0.172 Sum_probs=261.8
Q ss_pred CCCccchhhhhhhhhhc--cC---CCCeEEEEe---------ecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCC
Q 016933 1 MSSTAGLILTCKAAVAW--EA---GKPLIIQDV---------EVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFP 65 (380)
Q Consensus 1 m~~~~~~~~~~~a~~~~--~~---~~~~~~~~~---------~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p 65 (380)
||+ +++|.+|||+++. ++ .+.++++++ +.|+|++|||||||.++|||++|+.++.|..+ ...+|
T Consensus 2 Ms~-m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p 80 (349)
T 3pi7_A 2 MSP-MTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKG 80 (349)
T ss_dssp ----CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTT
T ss_pred CCC-CCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCC
Confidence 776 5678899999998 33 233777777 99999999999999999999999999988654 34689
Q ss_pred ccccccccEEEEEeCCCC-CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccc
Q 016933 66 RIFGHEAAGVVESVGEGV-SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHF 144 (380)
Q Consensus 66 ~v~G~e~vG~V~~vG~~v-~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~ 144 (380)
.++|||++|+|+++|+++ ++|++||||++.. |.
T Consensus 81 ~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~---------------------------g~------------------- 114 (349)
T 3pi7_A 81 RPAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT---------------------------GL------------------- 114 (349)
T ss_dssp SBCCSEEEEEEEEECSSHHHHHHTTCEEEEEC---------------------------TT-------------------
T ss_pred CCccceEEEEEEEECCCccCCCCCCCEEEEec---------------------------cC-------------------
Confidence 999999999999999999 9999999998652 10
Q ss_pred cCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCC-CeEEEEcC-CHHHHHHHHHHHHcCCcE
Q 016933 145 LGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERG-SSVAVFGL-GAVGLAAAEGARIAGASR 222 (380)
Q Consensus 145 ~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~vlI~G~-g~~G~~ai~la~~~g~~~ 222 (380)
...|+|+||+.++++.++++|+++++++||++++.+.|||++ .+.++ ++| +++||+|+ |++|++++|+|+.+|+ +
T Consensus 115 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~ 191 (349)
T 3pi7_A 115 SNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM-FDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-R 191 (349)
T ss_dssp SSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH-HHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-E
T ss_pred CCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH-HHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-E
Confidence 123699999999999999999999999999999999999965 55566 666 68888854 9999999999999999 9
Q ss_pred EEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 223 IIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 223 vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
|++++++++|+++++++|+++++++++.+ +.+.+++++++ ++|++||++|+ ..+..++++++++ |+++.+|....
T Consensus 192 Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~--~~~~v~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~ 267 (349)
T 3pi7_A 192 PIVTVRRDEQIALLKDIGAAHVLNEKAPD--FEATLREVMKAEQPRIFLDAVTG-PLASAIFNAMPKR-ARWIIYGRLDP 267 (349)
T ss_dssp EEEEESCGGGHHHHHHHTCSEEEETTSTT--HHHHHHHHHHHHCCCEEEESSCH-HHHHHHHHHSCTT-CEEEECCCSCC
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECCcHH--HHHHHHHHhcCCCCcEEEECCCC-hhHHHHHhhhcCC-CEEEEEeccCC
Confidence 99999999999999999999999988765 88899998876 99999999998 5668999999997 99999997653
Q ss_pred Cceeeccc-c-ccccccEEEeeeecCCCC------CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCcee
Q 016933 302 DAVFMTKP-I-NVLNERTLKGTFFGNYKP------RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLR 373 (380)
Q Consensus 302 ~~~~~~~~-~-~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~K 373 (380)
. ...+.. . .+.+++++.|++.+.+.. .+.++++++++++|+++ +++++.|+++++++||+.+.++..+|
T Consensus 268 ~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~gK 344 (349)
T 3pi7_A 268 D-ATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TDVTAVVPLAEAIAWVPAELTKPNGK 344 (349)
T ss_dssp S-CCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-CCEEEEHHHHHHHHHHHHTSSSSC
T ss_pred C-CCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cccceEEcHHHHHHHHHHHhCCCCce
Confidence 3 222333 2 244899999987543211 23577788888999774 45889999999999999666655589
Q ss_pred EEEec
Q 016933 374 CIISM 378 (380)
Q Consensus 374 vvi~~ 378 (380)
+||++
T Consensus 345 vvl~p 349 (349)
T 3pi7_A 345 VFIRP 349 (349)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99974
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-50 Score=373.05 Aligned_cols=314 Identities=23% Similarity=0.323 Sum_probs=262.3
Q ss_pred hhhhhhhhhhccCCCC--eEE-EEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCC
Q 016933 7 LILTCKAAVAWEAGKP--LII-QDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~--~~~-~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
.+.+|||+++.+++.+ +++ ++++.|+|++|||||||.++|||++|+.++.|.++ ...+|.++|||++|+|+++|++
T Consensus 26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~ 105 (351)
T 1yb5_A 26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN 105 (351)
T ss_dssp --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence 4567999999887765 888 89999999999999999999999999999888653 3467999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||++... ..|+|+||++++++.++
T Consensus 106 v~~~~vGdrV~~~~~------------------------------------------------~~G~~aey~~v~~~~~~ 137 (351)
T 1yb5_A 106 ASAFKKGDRVFTSST------------------------------------------------ISGGYAEYALAADHTVY 137 (351)
T ss_dssp CTTCCTTCEEEESCC------------------------------------------------SSCSSBSEEEEEGGGEE
T ss_pred CCCCCCCCEEEEeCC------------------------------------------------CCCcceeEEEECHHHeE
Confidence 999999999985421 02699999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+
T Consensus 138 ~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga 216 (351)
T 1yb5_A 138 KLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGA 216 (351)
T ss_dssp ECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCC
Confidence 999999999999999999999999877899999999999997 9999999999999999 89999999999999999999
Q ss_pred ceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEe
Q 016933 242 TDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKG 320 (380)
Q Consensus 242 ~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g 320 (380)
+.++++++.+ +.+.+.+.+++ ++|++||++|. ..+..++++++++ |+++.+|... ...++.. ..+.+++++.|
T Consensus 217 ~~~~d~~~~~--~~~~~~~~~~~~~~D~vi~~~G~-~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~-~~~~~~~~i~g 290 (351)
T 1yb5_A 217 HEVFNHREVN--YIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRG-TIEINPR-DTMAKESSIIG 290 (351)
T ss_dssp SEEEETTSTT--HHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCS-CEEECTH-HHHTTTCEEEE
T ss_pred CEEEeCCCch--HHHHHHHHcCCCCcEEEEECCCh-HHHHHHHHhccCC-CEEEEEecCC-CCccCHH-HHHhCCcEEEE
Confidence 9999887655 78888888776 89999999998 5788999999997 9999999643 2222221 22458899999
Q ss_pred eeecCCCCCCCh----HHHHHHHHcCCCCCCCceeeeeccccHHHHHHH-HHcCCc-eeEEEec
Q 016933 321 TFFGNYKPRTDL----PSVVDMYMNKQLELEKFITHRIPFSEINKAFEY-MVKGEG-LRCIISM 378 (380)
Q Consensus 321 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~-l~~~~~-~Kvvi~~ 378 (380)
+.+.... .+++ +.+.+++.++++. +++++.|+++++++|++. +++++. +|+||++
T Consensus 291 ~~~~~~~-~~~~~~~~~~l~~~~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~ 351 (351)
T 1yb5_A 291 VTLFSST-KEEFQQYAAALQAGMEIGWLK--PVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 351 (351)
T ss_dssp CCGGGCC-HHHHHHHHHHHHHHHHHTCCC--CCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred EEeecCC-HHHHHHHHHHHHHHHHCCCcc--CccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 7543221 1223 3455567778654 558899999999999998 565544 7999874
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=380.71 Aligned_cols=306 Identities=14% Similarity=0.141 Sum_probs=243.2
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
||||+++.+..+.+++++++.|+|++|||||||.+++||++|+.++.|..+...+|.++|||++|+|+++|+++++|++|
T Consensus 4 tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vG 83 (315)
T 3goh_A 4 QHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLG 83 (315)
T ss_dssp EEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGTT
T ss_pred ceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCCC
Confidence 49999998533449999999999999999999999999999999999877667889999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||+..+.. ...|+|+||++++++.++++|++++
T Consensus 84 drV~~~~~~----------------------------------------------~~~G~~aey~~v~~~~~~~iP~~~~ 117 (315)
T 3goh_A 84 RRVAYHTSL----------------------------------------------KRHGSFAEFTVLNTDRVMTLPDNLS 117 (315)
T ss_dssp CEEEEECCT----------------------------------------------TSCCSSBSEEEEETTSEEECCTTSC
T ss_pred CEEEEeCCC----------------------------------------------CCCcccccEEEEcHHHhccCcCCCC
Confidence 999965311 1136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+++||+++++++|||+++ +.+++++|++|||+|+|++|++++|+||.+|+ +|++++ +++|+++++++|++++++ +
T Consensus 118 ~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d 192 (315)
T 3goh_A 118 FERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E 192 (315)
T ss_dssp HHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S
T ss_pred HHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C
Confidence 999999999999999998 88999999999999999999999999999999 999998 999999999999999984 2
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeecCCC-
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYK- 327 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~- 327 (380)
. +.+ ++++|++|||+|+ +.+..++++++++ |+++.+|.............. ..+++++.+++.....
T Consensus 193 -~----~~v----~~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (315)
T 3goh_A 193 -P----SQV----TQKYFAIFDAVNS-QNAAALVPSLKAN-GHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQ 261 (315)
T ss_dssp -G----GGC----CSCEEEEECC--------TTGGGEEEE-EEEEEECCC----------CCSEEEEECGGGHHHHCCHH
T ss_pred -H----HHh----CCCccEEEECCCc-hhHHHHHHHhcCC-CEEEEEeCCCCccccchhhhcceeeEEEeecccccCChh
Confidence 1 112 4599999999999 4558899999997 999999765422222111111 1123333332211110
Q ss_pred ----CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCceeEEEecCC
Q 016933 328 ----PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 380 (380)
Q Consensus 328 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~~Kvvi~~~~ 380 (380)
..+.++++++++++|+++ +++++.|+|+++++||+.++ +..+|+||+++|
T Consensus 262 ~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~~~ 315 (315)
T 3goh_A 262 DWQILMQQGEALLTLIAQGKME--IAAPDIFRFEQMIEALDHSE-QTKLKTVLTLNE 315 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSC--CCCCEEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcc--cccceEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence 012467899999999875 45789999999999999998 545799999875
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=375.41 Aligned_cols=308 Identities=20% Similarity=0.244 Sum_probs=258.8
Q ss_pred hhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-----CCCCCCccccccccEEEEEeCC
Q 016933 9 LTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-----QTPLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 9 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-----~~~~~p~v~G~e~vG~V~~vG~ 81 (380)
++|||+++.+++++ +++++++.|+|++|||||||.++|||++|++++.|.. ....+|.++|||++|+|+++|+
T Consensus 5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~ 84 (321)
T 3tqh_A 5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS 84 (321)
T ss_dssp CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence 46999999998887 9999999999999999999999999999999988732 2456799999999999999999
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
++++|++||||++.+..++ ..|+|+||++++++.+
T Consensus 85 ~v~~~~~GdrV~~~~~~~~---------------------------------------------~~G~~aey~~v~~~~~ 119 (321)
T 3tqh_A 85 DVNNVNIGDKVMGIAGFPD---------------------------------------------HPCCYAEYVCASPDTI 119 (321)
T ss_dssp TCCSCCTTCEEEEECSTTT---------------------------------------------CCCCSBSEEEECGGGE
T ss_pred CCCCCCCCCEEEEccCCCC---------------------------------------------CCCcceEEEEecHHHh
Confidence 9999999999986642110 1369999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG 240 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG 240 (380)
+++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++ +++++++++++|
T Consensus 120 ~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lG 196 (321)
T 3tqh_A 120 IQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALG 196 (321)
T ss_dssp EECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcC
Confidence 99999999999999999999999997 889999999999997 59999999999999999 888886 566799999999
Q ss_pred CceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEe
Q 016933 241 VTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKG 320 (380)
Q Consensus 241 ~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g 320 (380)
+++++++++.+. +.+.+ .++|++||++|++ .+..++++++++ |+++.+|....... . .....+++++.+
T Consensus 197 a~~~i~~~~~~~-~~~~~-----~g~D~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~--~-~~~~~~~~~~~~ 265 (321)
T 3tqh_A 197 AEQCINYHEEDF-LLAIS-----TPVDAVIDLVGGD-VGIQSIDCLKET-GCIVSVPTITAGRV--I-EVAKQKHRRAFG 265 (321)
T ss_dssp CSEEEETTTSCH-HHHCC-----SCEEEEEESSCHH-HHHHHGGGEEEE-EEEEECCSTTHHHH--H-HHHHHTTCEEEC
T ss_pred CCEEEeCCCcch-hhhhc-----cCCCEEEECCCcH-HHHHHHHhccCC-CEEEEeCCCCchhh--h-hhhhhcceEEEE
Confidence 999999877541 22222 4799999999984 459999999997 99999987542211 1 112347788887
Q ss_pred eeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 321 TFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
+.. ....+++++++++++++++++ .+++.|+++++++||+.+++++. +|+||++.
T Consensus 266 ~~~--~~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 321 (321)
T 3tqh_A 266 LLK--QFNIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKLVFKVR 321 (321)
T ss_dssp CCC--CCCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred Eec--CCCHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 532 222356899999999998765 48999999999999999999887 69999874
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-50 Score=371.20 Aligned_cols=314 Identities=23% Similarity=0.299 Sum_probs=264.9
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC--CC-CCCCccccccccEEEEEeCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG--QT-PLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~--~~-~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
|||+++.+++.+ +++++++.|+|++|||||||.++|||++|+.++.|.+ .. ..+|.++|||++|+|+++|+++++
T Consensus 2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (333)
T 1wly_A 2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD 81 (333)
T ss_dssp CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence 899999887765 8899999999999999999999999999999988865 22 457999999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||+..+. ..|+|+||++++++.++++|
T Consensus 82 ~~~GdrV~~~~~------------------------------------------------~~G~~aey~~v~~~~~~~iP 113 (333)
T 1wly_A 82 FTVGERVCTCLP------------------------------------------------PLGAYSQERLYPAEKLIKVP 113 (333)
T ss_dssp CCTTCEEEECSS------------------------------------------------SCCCSBSEEEEEGGGCEECC
T ss_pred CCCCCEEEEecC------------------------------------------------CCCcceeEEEecHHHcEeCC
Confidence 999999975420 02589999999999999999
Q ss_pred CCCCccc--hhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 166 PLAPLDK--VCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 166 ~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
+++++++ ||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++
T Consensus 114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~ 192 (333)
T 1wly_A 114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH 192 (333)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999 99999999999999877889999999999996 9999999999999999 999999999999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc--cccccc--cE
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP--INVLNE--RT 317 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~--~~~~~~--~~ 317 (380)
.++++++.+ +.+.+.+.+.+ ++|++||++|+ ..+..++++++++ |+++.+|...+. ...++. ..+.++ ++
T Consensus 193 ~~~d~~~~~--~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~ 267 (333)
T 1wly_A 193 HTINYSTQD--FAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYGHASGV-ADPIRVVEDLGVRGSLFI 267 (333)
T ss_dssp EEEETTTSC--HHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEE-EEEEECCCTTCC-CCCCCHHHHTTTTTSCEE
T ss_pred EEEECCCHH--HHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccC-CEEEEEecCCCC-cCCCChhHhhhhcCCcEE
Confidence 999887655 77888887765 89999999999 8899999999997 999999986532 122222 223477 88
Q ss_pred EEeeeecCCCC----CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 318 LKGTFFGNYKP----RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 318 i~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
+.|+....+.. .+.++++++++++++++ +++++.|+++++++||+.+.+++. +|+|++++|
T Consensus 268 i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 333 (333)
T 1wly_A 268 TRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA 333 (333)
T ss_dssp ECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred EEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 88875422111 12578899999999875 458899999999999999988776 799999865
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=379.34 Aligned_cols=319 Identities=19% Similarity=0.213 Sum_probs=261.9
Q ss_pred hhhhhhhhhccCCCC---eEEEEeecCCCC--CCeEEEEEeeeecCcccchhhccCCCC-CCCC---------ccccccc
Q 016933 8 ILTCKAAVAWEAGKP---LIIQDVEVAPPQ--AMEVRIKIKYTSLCRTDLYFWESKGQT-PLFP---------RIFGHEA 72 (380)
Q Consensus 8 ~~~~~a~~~~~~~~~---~~~~~~~~p~~~--~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p---------~v~G~e~ 72 (380)
+++|||+++.+++++ ++++++++|+|+ +|||||||.++|||++|+.++.|..+. ..+| .++|||+
T Consensus 1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~ 80 (364)
T 1gu7_A 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG 80 (364)
T ss_dssp CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence 357999999999875 899999999887 999999999999999999999886543 3456 8999999
Q ss_pred cEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceee
Q 016933 73 AGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSE 152 (380)
Q Consensus 73 vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~ 152 (380)
+|+|+++|+++++|++||||++.+. +.|+|+|
T Consensus 81 ~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------------------------~~G~~ae 112 (364)
T 1gu7_A 81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------------------------NFGTWRT 112 (364)
T ss_dssp EEEEEEECTTCCSCCTTCEEEESSS------------------------------------------------CCCCSBS
T ss_pred EEEEEEeCCCCCcCCCCCEEEecCC------------------------------------------------CCCcchh
Confidence 9999999999999999999985421 1369999
Q ss_pred EEEEeccceEeCCC-----------CCCccchhhcchhhhhhhhhhhhccCCCCC-CeEEEEcC-CHHHHHHHHHHHHcC
Q 016933 153 YTVVHSGCVAKINP-----------LAPLDKVCILSCGVSTGLGATLNVAKPERG-SSVAVFGL-GAVGLAAAEGARIAG 219 (380)
Q Consensus 153 ~~~v~~~~~~~~p~-----------~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~vlI~G~-g~~G~~ai~la~~~g 219 (380)
|++++.+.++++|+ ++++++||+++++++|||+++.+.+++++| ++|||+|+ |++|++++|+||.+|
T Consensus 113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G 192 (364)
T 1gu7_A 113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192 (364)
T ss_dssp EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence 99999999999999 899999999999999999998777899999 99999997 999999999999999
Q ss_pred CcEEEEEcCChhH----HHHHHhcCCceEecCCCC-CccHHHHHHHHh--CC-CccEEEEcccChhhHHHHHHHhhcCCc
Q 016933 220 ASRIIGVDRSSKR----FEEAKKFGVTDFVNTSEH-DRPIQEVIAEMT--NG-GVDRSVECTGNIDNMISAFECVHDGWG 291 (380)
Q Consensus 220 ~~~vi~~~~~~~~----~~~~~~lG~~~vi~~~~~-~~~~~~~~~~~~--~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G 291 (380)
+ +++++.++.++ .++++++|+++++++++. ..++.+.+++++ ++ ++|++||++|+.... .++++++++ |
T Consensus 193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~-G 269 (364)
T 1gu7_A 193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNN-G 269 (364)
T ss_dssp C-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTT-C
T ss_pred C-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccC-C
Confidence 9 77777665543 678899999999987641 123778888887 44 899999999985544 889999997 9
Q ss_pred EEEEEcCCCCCceeeccccc-cccccEEEeeeecCCCC------CCChHHHHHHHHcCCCCCCCceeeee-ccccHHHHH
Q 016933 292 VAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFGNYKP------RTDLPSVVDMYMNKQLELEKFITHRI-PFSEINKAF 363 (380)
Q Consensus 292 ~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~a~ 363 (380)
+++.+|.... ....++... +.+++++.|+....+.. .+.++++++++++|++++.+..+..+ +++++++||
T Consensus 270 ~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~ 348 (364)
T 1gu7_A 270 LMLTYGGMSF-QPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELY 348 (364)
T ss_dssp EEEECCCCSS-CCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHH
T ss_pred EEEEecCCCC-CCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHH
Confidence 9999997653 223333332 34889999976543211 13588999999999998775544444 456999999
Q ss_pred HHHHcCCc-eeEEEec
Q 016933 364 EYMVKGEG-LRCIISM 378 (380)
Q Consensus 364 ~~l~~~~~-~Kvvi~~ 378 (380)
+.+.+++. +|+||++
T Consensus 349 ~~~~~~~~~gKvvv~~ 364 (364)
T 1gu7_A 349 QDGVANSKDGKQLITY 364 (364)
T ss_dssp HHHHHTGGGSCEEEEC
T ss_pred HHHHhCCCCceEEEeC
Confidence 99988865 7999975
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=379.79 Aligned_cols=316 Identities=21% Similarity=0.310 Sum_probs=257.9
Q ss_pred chhhhhhhhhhccCCCC---eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCC
Q 016933 6 GLILTCKAAVAWEAGKP---LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGE 81 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~ 81 (380)
++|.+|||+++.+++.+ +++++++.|+|++|||||||.++|||++|+..+.|..+. ..+|.++|||++|+|+++|+
T Consensus 22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~ 101 (357)
T 1zsy_A 22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS 101 (357)
T ss_dssp CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence 35667999999999886 889999999999999999999999999999999886543 35799999999999999999
Q ss_pred CCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 82 GVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 82 ~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
++++|++||||++.+. +.|+|+||++++++.+
T Consensus 102 ~v~~~~vGdrV~~~~~------------------------------------------------~~G~~aey~~v~~~~~ 133 (357)
T 1zsy_A 102 NVTGLKPGDWVIPANA------------------------------------------------GLGTWRTEAVFSEEAL 133 (357)
T ss_dssp TCCSCCTTCEEEESSS------------------------------------------------CSCCSBSEEEEEGGGE
T ss_pred CCCCCCCCCEEEEcCC------------------------------------------------CCccceeEEecCHHHc
Confidence 9999999999985421 1369999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh----hHHHHH
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS----KRFEEA 236 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~----~~~~~~ 236 (380)
+++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +++++.+++ ++.+++
T Consensus 134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~ 212 (357)
T 1zsy_A 134 IQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRL 212 (357)
T ss_dssp EEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHH
T ss_pred EECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHH
Confidence 9999999999999999999999999878889999999999997 9999999999999999 555554432 367889
Q ss_pred HhcCCceEecCCCCCccHHHHHHHHhCC--CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cc
Q 016933 237 KKFGVTDFVNTSEHDRPIQEVIAEMTNG--GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VL 313 (380)
Q Consensus 237 ~~lG~~~vi~~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~ 313 (380)
+++|+++++++++. ..+.+.+.+.+ ++|+|||++|++ ....++++++++ |+++.+|..... ...++... +.
T Consensus 213 ~~lGa~~vi~~~~~---~~~~~~~~~~~~~~~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~ 286 (357)
T 1zsy_A 213 KSLGAEHVITEEEL---RRPEMKNFFKDMPQPRLALNCVGGK-SSTELLRQLARG-GTMVTYGGMAKQ-PVVASVSLLIF 286 (357)
T ss_dssp HHTTCSEEEEHHHH---HSGGGGGTTSSSCCCSEEEESSCHH-HHHHHHTTSCTT-CEEEECCCCTTC-CBCCCHHHHHH
T ss_pred HhcCCcEEEecCcc---hHHHHHHHHhCCCCceEEEECCCcH-HHHHHHHhhCCC-CEEEEEecCCCC-CCCCCHHHHHh
Confidence 99999999986431 11234444444 599999999984 456789999997 999999865422 22333222 34
Q ss_pred cccEEEeeeecCCC-------CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 314 NERTLKGTFFGNYK-------PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 314 ~~~~i~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+++++.|++.+.+. ..+.++++++++++|++++. +.+.|+++++++||+.+.+++. +|+||++
T Consensus 287 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 357 (357)
T 1zsy_A 287 KDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFISSKQILTM 357 (357)
T ss_dssp SCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred cCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence 89999998654221 11346889999999988765 4689999999999999988775 6999875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=373.19 Aligned_cols=317 Identities=18% Similarity=0.238 Sum_probs=267.2
Q ss_pred hhhhhhhhhhccCCC----CeEE-EEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeC
Q 016933 7 LILTCKAAVAWEAGK----PLII-QDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~----~~~~-~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG 80 (380)
.+.+|||+++.+++. .+++ ++++.|+|++|||||||.++|||++|+.++.|.++. ..+|.++|||++|+|+++|
T Consensus 20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG 99 (362)
T 2c0c_A 20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG 99 (362)
T ss_dssp HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence 456799999998875 3889 999999999999999999999999999999886542 4689999999999999999
Q ss_pred CCCC-CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 81 EGVS-DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 81 ~~v~-~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
++++ +|++||||+... .|+|+||++++++
T Consensus 100 ~~V~~~~~vGdrV~~~~--------------------------------------------------~G~~aey~~v~~~ 129 (362)
T 2c0c_A 100 LSASARYTVGQAVAYMA--------------------------------------------------PGSFAEYTVVPAS 129 (362)
T ss_dssp TTGGGTCCTTCEEEEEC--------------------------------------------------SCCSBSEEEEEGG
T ss_pred CCccCCCCCCCEEEEcc--------------------------------------------------CCcceeEEEEcHH
Confidence 9999 999999998531 2599999999999
Q ss_pred ceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 160 CVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 160 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
.++++|+. + .++|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+++++
T Consensus 130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence 99999996 3 5678888899999999888889999999999995 9999999999999999 89999999999999999
Q ss_pred cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCce------e---eccc
Q 016933 239 FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAV------F---MTKP 309 (380)
Q Consensus 239 lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~------~---~~~~ 309 (380)
+|++.++++++.+ +.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|....... + .+..
T Consensus 207 ~Ga~~~~~~~~~~--~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~ 282 (362)
T 2c0c_A 207 LGCDRPINYKTEP--VGTVLKQEYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTLPA 282 (362)
T ss_dssp TTCSEEEETTTSC--HHHHHHHHCTTCEEEEEECSCT-HHHHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTHHH
T ss_pred cCCcEEEecCChh--HHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHHhcC-CEEEEEeCCCCcCcccccccccccccHH
Confidence 9999999987655 7778887765589999999998 7889999999997 99999997542210 0 1111
Q ss_pred cccccccEEEeeeecCCC--CCCChHHHHHHHHcCCCCCCCc------eeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 310 INVLNERTLKGTFFGNYK--PRTDLPSVVDMYMNKQLELEKF------ITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 310 ~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
..+.+++++.|+....+. ..+.++++++++++|++++... +++.++++++++|++.+++++. +|+||+++|
T Consensus 283 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 362 (362)
T 2c0c_A 283 KLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH 362 (362)
T ss_dssp HHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred HHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence 223488999998654332 1245889999999998876533 2466899999999999988775 799999875
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=366.47 Aligned_cols=313 Identities=19% Similarity=0.245 Sum_probs=264.0
Q ss_pred hhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCC
Q 016933 10 TCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 10 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
+|||+++.+++.+ +++++++.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus 1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (327)
T 1qor_A 1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK 80 (327)
T ss_dssp -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence 3899999887765 88999999999999999999999999999999988665456899999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||... |. ..|+|+||+.++++.++++|++
T Consensus 81 ~GdrV~~~----------------------------g~--------------------~~G~~aey~~v~~~~~~~iP~~ 112 (327)
T 1qor_A 81 AGDRVVYA----------------------------QS--------------------ALGAYSSVHNIIADKAAILPAA 112 (327)
T ss_dssp TTCEEEES----------------------------CC--------------------SSCCSBSEEEEEGGGEEECCTT
T ss_pred CCCEEEEC----------------------------CC--------------------CCceeeeEEEecHHHcEECCCC
Confidence 99999421 10 1268999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++.+++
T Consensus 113 l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~ 191 (327)
T 1qor_A 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 191 (327)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999877889999999999995 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-ccc-ccEEEeeee
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLN-ERTLKGTFF 323 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~-~~~i~g~~~ 323 (380)
+.+.+ +.+.+.+.+.+ ++|++||++| ...+..++++++++ |+++.+|...+. ...++... +.+ ++++.+...
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (327)
T 1qor_A 192 YREED--LVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRR-GLMVSFGNSSGA-VTGVNLGILNQKGSLYVTRPSL 266 (327)
T ss_dssp TTTSC--HHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEE-EEEEECCCTTCC-CCCBCTHHHHHTTSCEEECCCH
T ss_pred CCCcc--HHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCC-CEEEEEecCCCC-CCccCHHHHhhccceEEEccch
Confidence 87655 77888887766 8999999999 48899999999997 999999986532 12222222 235 677776443
Q ss_pred cCCC-----CCCChHHHHHHHHcCCCCCCCcee--eeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 324 GNYK-----PRTDLPSVVDMYMNKQLELEKFIT--HRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 324 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+.+. ..+.+++++++++++++++ +++ +.|+++++++||+.+++++. +|+||++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 327 (327)
T 1qor_A 267 QGYITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 2111 1234788999999998765 477 89999999999999988765 7999864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=371.70 Aligned_cols=312 Identities=17% Similarity=0.179 Sum_probs=259.7
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.++++| +++++++.|+|++|||||||.++|||++|+.++.|..+. ..+|.++|||++|+|+++| +++|+
T Consensus 1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~ 78 (324)
T 3nx4_A 1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH 78 (324)
T ss_dssp CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence 899999999986 889999999999999999999999999999999987653 5789999999999999998 57899
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||++.+ |.. |. ...|+|+||+.+|.+.++++|++
T Consensus 79 vGdrV~~~~---~~~---------------------g~-------------------~~~G~~aey~~v~~~~~~~iP~~ 115 (324)
T 3nx4_A 79 AGQEVLLTG---WGV---------------------GE-------------------NHWGGLAERARVKGDWLVALPAG 115 (324)
T ss_dssp TTCEEEEEC---TTB---------------------TT-------------------TBCCSSBSEEEECGGGCEECCTT
T ss_pred CCCEEEEcc---ccc---------------------CC-------------------CCCCceeeEEecCHHHcEECCCC
Confidence 999999652 100 11 12369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhh--hccCCCCCC-eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGATL--NVAKPERGS-SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+++++||++++.+.|||.++. ...++++++ +|||+|+ |++|++++|+||.+|+ +|++++++++|.++++++|+++
T Consensus 116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~ 194 (324)
T 3nx4_A 116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR 194 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence 999999999999999999875 445677633 4999998 9999999999999999 9999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~ 322 (380)
++|+++.+ . +++++++++|++||++|+ +.+..++++++++ |+++.+|..... ....+.. .+.+++++.|+.
T Consensus 195 vi~~~~~~--~---~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~~~g~~ 266 (324)
T 3nx4_A 195 ILSRDEFA--E---SRPLEKQLWAGAIDTVGD-KVLAKVLAQMNYG-GCVAACGLAGGF-ALPTTVMPFILRNVRLQGVD 266 (324)
T ss_dssp EEEGGGSS--C---CCSSCCCCEEEEEESSCH-HHHHHHHHTEEEE-EEEEECCCTTCS-EEEEESHHHHHHCCEEEECC
T ss_pred EEecCCHH--H---HHhhcCCCccEEEECCCc-HHHHHHHHHHhcC-CEEEEEecCCCC-CCCCCHHHHhhcCeEEEEEe
Confidence 99987654 2 444555689999999998 5899999999997 999999987643 2333332 245899999986
Q ss_pred ecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 323 FGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 323 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
...... .+.++++++++++|++++ . ++.|+++++++||+.+++++. +|+||+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~ 324 (324)
T 3nx4_A 267 SVMTPPARRAEAWARLVKDLPESFYAQ--A-ATEITLADAPKFADAIINNQVQGRTLVKIK 324 (324)
T ss_dssp STTCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred ccccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence 433211 134677888888887643 3 899999999999999999887 69999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=360.02 Aligned_cols=308 Identities=16% Similarity=0.213 Sum_probs=260.3
Q ss_pred hhhhhhhhcc--C----CCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCcccccc----ccEEEEE
Q 016933 9 LTCKAAVAWE--A----GKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE----AAGVVES 78 (380)
Q Consensus 9 ~~~~a~~~~~--~----~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e----~vG~V~~ 78 (380)
++|||+++.+ + .+.+++++++.|+|++|||||||.+++||++|+..+.+... ..+|.++||| ++|+|++
T Consensus 6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~ 84 (336)
T 4b7c_A 6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV 84 (336)
T ss_dssp CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence 5699999975 1 23399999999999999999999999999999988776432 3457778887 7999999
Q ss_pred eCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 79 VGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 79 vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
. ++++|++||||++. |+|+||+++|.
T Consensus 85 ~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~ 110 (336)
T 4b7c_A 85 S--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP 110 (336)
T ss_dssp E--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred c--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence 4 58899999999843 58999999999
Q ss_pred cceEeCCCCCCccch--hhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHH
Q 016933 159 GCVAKINPLAPLDKV--CILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235 (380)
Q Consensus 159 ~~~~~~p~~~~~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~ 235 (380)
+.++++|+++++.++ ++++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.
T Consensus 111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~ 189 (336)
T 4b7c_A 111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF 189 (336)
T ss_dssp TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 999999999987776 7899999999999878999999999999998 9999999999999999 99999999999999
Q ss_pred H-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc-----eeeccc
Q 016933 236 A-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA-----VFMTKP 309 (380)
Q Consensus 236 ~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~ 309 (380)
+ +++|++.++++.+.+ +.+.+++.+++++|++||++|+ +.+..++++++++ |+++.+|...... ....+.
T Consensus 190 ~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~ 265 (336)
T 4b7c_A 190 LVEELGFDGAIDYKNED--LAAGLKRECPKGIDVFFDNVGG-EILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANY 265 (336)
T ss_dssp HHHTTCCSEEEETTTSC--HHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGGC------CCTTT
T ss_pred HHHHcCCCEEEECCCHH--HHHHHHHhcCCCceEEEECCCc-chHHHHHHHHhhC-CEEEEEeecccccCCcccccchhH
Confidence 9 899999999988765 8888988886699999999998 7899999999997 9999999764211 112222
Q ss_pred cc-cccccEEEeeeecCCCC--CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 310 IN-VLNERTLKGTFFGNYKP--RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 310 ~~-~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.. +.+++++.|+..+.+.. .+.+.++++++++|++++.. ...++++++++||+.+++++. +|+||++
T Consensus 266 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 336 (336)
T 4b7c_A 266 LSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSRE--DIVEGLETFPETLLKLFSGENFGKLVLKV 336 (336)
T ss_dssp THHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCE--EEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccce--eeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 22 34899999987654321 14678999999999887764 455799999999999999877 6999975
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=360.55 Aligned_cols=316 Identities=21% Similarity=0.266 Sum_probs=254.4
Q ss_pred chhhhhhhhhhccCCCC--eEE-EEeecCCC-CCCeEEEEEeeeecCcccchhhccCCC---------------CCCCCc
Q 016933 6 GLILTCKAAVAWEAGKP--LII-QDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQ---------------TPLFPR 66 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~---------------~~~~p~ 66 (380)
.++++|||+++.+++.+ +++ ++++.|.| ++|||||||.++|||++|+.++.|... ...+|.
T Consensus 17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~ 96 (375)
T 2vn8_A 17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL 96 (375)
T ss_dssp -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence 46678999999988765 888 89999985 999999999999999999999887431 123799
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccC
Q 016933 67 IFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLG 146 (380)
Q Consensus 67 v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~ 146 (380)
++|||++|+|+++|+++++|++||||++.+.. ..
T Consensus 97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~----------------------------------------------~~ 130 (375)
T 2vn8_A 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP----------------------------------------------WK 130 (375)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEECCT----------------------------------------------TS
T ss_pred ccceeeeEEEEEeCCCCCCCCCCCEEEEecCC----------------------------------------------CC
Confidence 99999999999999999999999999865310 01
Q ss_pred CcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccC----CCCCCeEEEEcC-CHHHHHHHHHHHHcCCc
Q 016933 147 TSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAK----PERGSSVAVFGL-GAVGLAAAEGARIAGAS 221 (380)
Q Consensus 147 ~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~vlI~G~-g~~G~~ai~la~~~g~~ 221 (380)
.|+|+||++++++.++++|+++++++||+++++++|||+++.+.++ +++|++|||+|+ |++|++++|+|+.+|+
T Consensus 131 ~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga- 209 (375)
T 2vn8_A 131 QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA- 209 (375)
T ss_dssp CCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred CccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence 3699999999999999999999999999999999999999877788 999999999995 9999999999999999
Q ss_pred EEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 222 RIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 222 ~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+|++++ +++++++++++|++.++++++.+ +.+.+.+. +++|++||++|+. ..+..++++++++ |+++.+|...
T Consensus 210 ~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~--~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~ 283 (375)
T 2vn8_A 210 HVTAVC-SQDASELVRKLGADDVIDYKSGS--VEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVTPF 283 (375)
T ss_dssp EEEEEE-CGGGHHHHHHTTCSEEEETTSSC--HHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCCSH
T ss_pred EEEEEe-ChHHHHHHHHcCCCEEEECCchH--HHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCCCc
Confidence 898887 67899999999999999987755 66666543 4799999999985 4568888999997 9999998753
Q ss_pred CCce----eeccc----ccc-c-------cccEEEeeeecCCCCCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHH
Q 016933 301 KDAV----FMTKP----INV-L-------NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFE 364 (380)
Q Consensus 301 ~~~~----~~~~~----~~~-~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~ 364 (380)
.... +.... ..+ . +...+..... ....+.++++++++++|+++ +++++.|+++++++||+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~ 359 (375)
T 2vn8_A 284 LLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVDAGKIR--PVIEQTFPFSKVPEAFL 359 (375)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHH
T ss_pred ccccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHHCCCcc--cCcCeEECHHHHHHHHH
Confidence 2110 00000 001 1 2223322211 11123578999999999875 56889999999999999
Q ss_pred HHHcCCc-eeEEEec
Q 016933 365 YMVKGEG-LRCIISM 378 (380)
Q Consensus 365 ~l~~~~~-~Kvvi~~ 378 (380)
.+++++. +|+||++
T Consensus 360 ~~~~~~~~gKvvi~~ 374 (375)
T 2vn8_A 360 KVERGHARGKTVINV 374 (375)
T ss_dssp HHHHCCCSSEEEEEC
T ss_pred HHHcCCCCCeEEEEe
Confidence 9998865 7999986
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=365.68 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=254.8
Q ss_pred hhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC---------------------------
Q 016933 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ--------------------------- 60 (380)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~--------------------------- 60 (380)
..+|||++.......+++++++.|+|++|||||||.+++||++|+.++.|..+
T Consensus 5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~ 84 (379)
T 3iup_A 5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM 84 (379)
T ss_dssp EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence 56799998855444599999999999999999999999999999999887421
Q ss_pred --CCCCCccccccccEEEEEeCCCC-CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccC
Q 016933 61 --TPLFPRIFGHEAAGVVESVGEGV-SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSIN 137 (380)
Q Consensus 61 --~~~~p~v~G~e~vG~V~~vG~~v-~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~ 137 (380)
...+|.++|||++|+|+++|++| ++|++||||++.+
T Consensus 85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~----------------------------------------- 123 (379)
T 3iup_A 85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG----------------------------------------- 123 (379)
T ss_dssp GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-----------------------------------------
T ss_pred ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-----------------------------------------
Confidence 23578999999999999999999 8999999998541
Q ss_pred CCccccccCCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE--cCCHHHHHHHHHH
Q 016933 138 GEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF--GLGAVGLAAAEGA 215 (380)
Q Consensus 138 g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~--G~g~~G~~ai~la 215 (380)
.|+|+||++++.+.++++|+++++++||++++...|||+++ +... ++|++|||+ |+|++|++++|+|
T Consensus 124 ---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a 192 (379)
T 3iup_A 124 ---------GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQIC 192 (379)
T ss_dssp ---------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred ---------CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence 25999999999999999999999999999999999999764 4444 899999999 4599999999999
Q ss_pred HHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhh-----cC
Q 016933 216 RIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVH-----DG 289 (380)
Q Consensus 216 ~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~-----~~ 289 (380)
|.+|+ +|++++++++|+++++++|+++++++++.+ +.+.+++++++ ++|++|||+|++.....++++++ ++
T Consensus 193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~--~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~ 269 (379)
T 3iup_A 193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAASPT--FMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSA 269 (379)
T ss_dssp HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTSTT--HHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTC
T ss_pred HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCChH--HHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccc
Confidence 99999 899999999999999999999999998766 88999998887 99999999999777888888886 32
Q ss_pred ----------CcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC---CCCCh----HHHHHHHHcCCCCCCCceee
Q 016933 290 ----------WGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK---PRTDL----PSVVDMYMNKQLELEKFITH 352 (380)
Q Consensus 290 ----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~ 352 (380)
.|+++.+|... .....+. ..+.+++++.|+.++.+. ..+.+ +++++++.+ .+.+++++
T Consensus 270 G~~~~~G~~~~g~iv~~G~~~-~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~i~~ 344 (379)
T 3iup_A 270 REYSRYGSTTHKQVYLYGGLD-TSPTEFN-RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT---TFASHYSK 344 (379)
T ss_dssp CSCCTTCCCSCEEEEECCCSE-EEEEEEC-CCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT---TTCCCCSE
T ss_pred cceeecccccCceEEEecCCC-CCccccc-cccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc---cCCCcceE
Confidence 15555555543 2222332 224578899997764431 11223 444444444 24556889
Q ss_pred eeccccH--HHHHHHHHcCCc-eeEEEecC
Q 016933 353 RIPFSEI--NKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 353 ~~~l~~~--~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.|+|+++ ++||+.+.+++. +|+||+++
T Consensus 345 ~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~ 374 (379)
T 3iup_A 345 EISLAEVLDLDMIAVYNKRATGEKYLINPN 374 (379)
T ss_dssp EEEHHHHTCHHHHHHHTTCCTTCCEEEETT
T ss_pred EecHHHhhhHHHHHHHhcCCCCceEEEeCC
Confidence 9999999 999999998876 79999976
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=353.91 Aligned_cols=316 Identities=16% Similarity=0.215 Sum_probs=261.7
Q ss_pred cchhhhhhhhhh-ccC---CC----CeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhcc----CCC-CCCCCccccc
Q 016933 5 AGLILTCKAAVA-WEA---GK----PLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWES----KGQ-TPLFPRIFGH 70 (380)
Q Consensus 5 ~~~~~~~~a~~~-~~~---~~----~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g----~~~-~~~~p~v~G~ 70 (380)
+.+|++|||+++ ..+ |. .+++++++.|+| ++|||||||.++|||++|+..+.+ .+. ...+|.++||
T Consensus 3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~ 82 (357)
T 2zb4_A 3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG 82 (357)
T ss_dssp ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence 457889999999 555 43 399999999999 999999999999999999887765 222 3457899999
Q ss_pred cccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcce
Q 016933 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTF 150 (380)
Q Consensus 71 e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~ 150 (380)
|++|+|++ +++++|++||||++. .|+|
T Consensus 83 E~~G~V~~--~~v~~~~vGdrV~~~---------------------------------------------------~G~~ 109 (357)
T 2zb4_A 83 GGIGIIEE--SKHTNLTKGDFVTSF---------------------------------------------------YWPW 109 (357)
T ss_dssp EEEEEEEE--ECSTTCCTTCEEEEE---------------------------------------------------EEES
T ss_pred cEEEEEEe--cCCCCCCCCCEEEec---------------------------------------------------CCCc
Confidence 99999999 889999999999853 1589
Q ss_pred eeEEEEeccceEeCCCCC-----CccchhhcchhhhhhhhhhhhccCCCCC--CeEEEEcC-CHHHHHHHHHHHHcCCcE
Q 016933 151 SEYTVVHSGCVAKINPLA-----PLDKVCILSCGVSTGLGATLNVAKPERG--SSVAVFGL-GAVGLAAAEGARIAGASR 222 (380)
Q Consensus 151 a~~~~v~~~~~~~~p~~~-----~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~vlI~G~-g~~G~~ai~la~~~g~~~ 222 (380)
+||++++.+.++++|+++ +++ +++++++++|||+++.+.+++++| ++|||+|+ |++|++++|+|+..|+.+
T Consensus 110 aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~ 188 (357)
T 2zb4_A 110 QTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR 188 (357)
T ss_dssp BSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred EEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence 999999999999999999 544 778899999999998788999999 99999998 999999999999999878
Q ss_pred EEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 223 IIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 223 vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
|+++++++++.+.+++ +|++.++++.+.+ +.+.+.+.+.+++|++||++|+ ..+..++++++++ |+++.+|....
T Consensus 189 Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~ 264 (357)
T 2zb4_A 189 VVGICGTHEKCILLTSELGFDAAINYKKDN--VAEQLRESCPAGVDVYFDNVGG-NISDTVISQMNEN-SHIILCGQISQ 264 (357)
T ss_dssp EEEEESCHHHHHHHHHTSCCSEEEETTTSC--HHHHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEE-EEEEECCCGGG
T ss_pred EEEEeCCHHHHHHHHHHcCCceEEecCchH--HHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccC-cEEEEECCccc
Confidence 9999999999999987 9999999887654 8888888776689999999997 7889999999997 99999997642
Q ss_pred C-ceeecc--------ccccccccEEEeeeecCCC--CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCC
Q 016933 302 D-AVFMTK--------PINVLNERTLKGTFFGNYK--PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGE 370 (380)
Q Consensus 302 ~-~~~~~~--------~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~ 370 (380)
. ..++.. ...+.+++++.|+....+. ..+.+.++++++++|++++.+ ...|+|+++++||+.+.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~~~A~~~~~~~~ 342 (357)
T 2zb4_A 265 YNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKE--TVINGLENMGAAFQSMMTGG 342 (357)
T ss_dssp TTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCE--EEEECGGGHHHHHHHHHTTC
T ss_pred cccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCcc--ceecCHHHHHHHHHHHHcCC
Confidence 1 122221 1223488999987653321 124588999999999888763 45699999999999999887
Q ss_pred c-eeEEEecCC
Q 016933 371 G-LRCIISMED 380 (380)
Q Consensus 371 ~-~Kvvi~~~~ 380 (380)
. +|+||++++
T Consensus 343 ~~gKvvi~~~~ 353 (357)
T 2zb4_A 343 NIGKQIVCISE 353 (357)
T ss_dssp CSBEEEEECCC
T ss_pred CCceEEEEEec
Confidence 5 799998863
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-48 Score=359.46 Aligned_cols=316 Identities=17% Similarity=0.189 Sum_probs=250.1
Q ss_pred hhhhhhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCC
Q 016933 9 LTCKAAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 9 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
++|||+++.+++. .+++++++.|+|+++||||||.++|||++|+..+.|..+. ..+|.++|||++|+|+++ ++++
T Consensus 3 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~ 80 (330)
T 1tt7_A 3 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPR 80 (330)
T ss_dssp CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTT
T ss_pred CcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCC
Confidence 3599999988773 4899999999999999999999999999999998886543 357999999999999996 4688
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++.+.. .|. ...|+|+||++++++.++++|
T Consensus 81 ~~vGdrV~~~~~~------------------------~g~-------------------~~~G~~aey~~v~~~~~~~iP 117 (330)
T 1tt7_A 81 FAEGDEVIATSYE------------------------LGV-------------------SRDGGLSEYASVPGDWLVPLP 117 (330)
T ss_dssp CCTTCEEEEESTT------------------------BTT-------------------TBCCSSBSSEEECGGGEEECC
T ss_pred CCCCCEEEEcccc------------------------cCC-------------------CCCccceeEEEecHHHeEECC
Confidence 9999999865210 011 113699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhh--hccCCCCCC-eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 166 PLAPLDKVCILSCGVSTGLGATL--NVAKPERGS-SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+++++++||++++++.|||.++. +.+++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus 118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa 196 (330)
T 1tt7_A 118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA 196 (330)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC
T ss_pred CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99999999999999999998764 346789996 9999997 9999999999999999 79999999999999999999
Q ss_pred ceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEe
Q 016933 242 TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKG 320 (380)
Q Consensus 242 ~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g 320 (380)
++++++++.+ .+.+++++++++|++||++|+ +.+..++++++++ |+++.+|...+. ....+... +.+++++.|
T Consensus 197 ~~v~~~~~~~---~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g 270 (330)
T 1tt7_A 197 SEVISREDVY---DGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGGG-EVPATVYPFILRGVSLLG 270 (330)
T ss_dssp SEEEEHHHHC---SSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSCS-CEEECSHHHHTSCCEEEE
T ss_pred cEEEECCCch---HHHHHHhhcCCccEEEECCcH-HHHHHHHHhhcCC-CEEEEEecCCCC-ccCcchHHHHhcCeEEEE
Confidence 9998764321 011223334489999999999 6899999999997 999999986532 22333222 458899998
Q ss_pred eeecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 321 TFFGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 321 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
+....... .+.++++++++.++++ ++++++.|+++++++||+.+++++. +|+||++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 330 (330)
T 1tt7_A 271 IDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330 (330)
T ss_dssp CCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred EeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 74321110 1123444555556655 4567899999999999999988776 7999864
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=351.88 Aligned_cols=314 Identities=18% Similarity=0.195 Sum_probs=245.9
Q ss_pred hhhhhhhccCCC--CeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGK--PLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+|||+++.+++. .+++++++.|+|+++||||||.++|||++|+..+.|..+. ..+|.++|||++|+|+++ ++++|
T Consensus 3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~ 80 (328)
T 1xa0_A 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF 80 (328)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence 499999998874 3889999999999999999999999999999998885442 457999999999999995 56889
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.... .|. ...|+|+||+++|++.++++|+
T Consensus 81 ~vGdrV~~~~~~------------------------~g~-------------------~~~G~~aey~~v~~~~~~~~P~ 117 (328)
T 1xa0_A 81 REGDEVIATGYE------------------------IGV-------------------THFGGYSEYARLHGEWLVPLPK 117 (328)
T ss_dssp CTTCEEEEESTT------------------------BTT-------------------TBCCSSBSEEEECGGGCEECCT
T ss_pred CCCCEEEEcccc------------------------CCC-------------------CCCccceeEEEechHHeEECCC
Confidence 999999865210 011 0136999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhh--hccCCCCCC-eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 167 LAPLDKVCILSCGVSTGLGATL--NVAKPERGS-SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
++++++||++++++.|||.++. +.+++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++
T Consensus 118 ~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~ 196 (328)
T 1xa0_A 118 GLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAK 196 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCS
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence 9999999999999999998764 347789986 9999997 9999999999999999 799999999999999999999
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEee
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGT 321 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~ 321 (380)
+++++++.+ .+.+++++++++|++||++|+ +.+..++++++++ |+++.+|...+. ....+... +.+++++.|+
T Consensus 197 ~~i~~~~~~---~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~~~~~~~~~~~~~i~g~ 270 (328)
T 1xa0_A 197 EVLAREDVM---AERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTGGA-EVPTTVHPFILRGVSLLGI 270 (328)
T ss_dssp EEEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCSSS-CCCCCSHHHHHTTCEEEEC
T ss_pred EEEecCCcH---HHHHHHhcCCcccEEEECCcH-HHHHHHHHhhccC-CEEEEEeecCCC-CCCCchhhhhhcCceEEEE
Confidence 999886532 223444554589999999998 6899999999997 999999986532 22222222 3488999987
Q ss_pred eecCCCC---CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 322 FFGNYKP---RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 322 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
....... .+.+++++++++++ + .+ +++.|+++++++||+.+++++. +|+||+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g-l--~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 328 (328)
T 1xa0_A 271 DSVYCPMDLRLRIWERLAGDLKPD-L--ER-IAQEISLAELPQALKRILRGELRGRTVVRLA 328 (328)
T ss_dssp CSSSCCHHHHHHHHHHHHTTTCCC-H--HH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred ecccCCHHHHHHHHHHHHHHHHcC-C--ce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence 4321110 01233444444444 3 23 4699999999999999988876 79999863
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=339.67 Aligned_cols=293 Identities=19% Similarity=0.260 Sum_probs=242.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.+++++..+++++.|+|++|||||||.++|||++|+.++.|.++. ..+|.++|||++|+|+ |
T Consensus 1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G 69 (302)
T 1iz0_A 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G 69 (302)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence 789999888887667799999999999999999999999999999886543 3679999999999997 9
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||+... ..|+|+||++++++.++++|++++
T Consensus 70 drV~~~~-------------------------------------------------~~G~~aey~~v~~~~~~~iP~~~~ 100 (302)
T 1iz0_A 70 RRYAALV-------------------------------------------------PQGGLAERVAVPKGALLPLPEGLS 100 (302)
T ss_dssp EEEEEEC-------------------------------------------------SSCCSBSEEEEEGGGCEECCTTCC
T ss_pred cEEEEec-------------------------------------------------CCcceeeEEEEcHHHcEeCCCCCC
Confidence 9998542 126899999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+++||+++++++|||+++.+.+ +++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++++++++
T Consensus 101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~ 178 (302)
T 1iz0_A 101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA 178 (302)
T ss_dssp HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999987677 999999999998 9999999999999999 999999999999999999999998875
Q ss_pred C-CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCC
Q 016933 249 E-HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNY 326 (380)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~ 326 (380)
+ .+ +.+.+ +++|++|| +|+ ..+..++++++++ |+++.+|..... ...++.. .+.+++++.|+.+..+
T Consensus 179 ~~~~--~~~~~-----~~~d~vid-~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 247 (302)
T 1iz0_A 179 EVPE--RAKAW-----GGLDLVLE-VRG-KEVEESLGLLAHG-GRLVYIGAAEGE-VAPIPPLRLMRRNLAVLGFWLTPL 247 (302)
T ss_dssp GHHH--HHHHT-----TSEEEEEE-CSC-TTHHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred cchh--HHHHh-----cCceEEEE-CCH-HHHHHHHHhhccC-CEEEEEeCCCCC-CCCcCHHHHHhCCCeEEEEeccch
Confidence 4 22 43333 57999999 998 7899999999997 999999986532 1122222 2458899999875422
Q ss_pred C-CCCChHHHHH---HHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 327 K-PRTDLPSVVD---MYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 327 ~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
. ..+.++++++ ++.+++++ +++++.|+++++++||+.+++++. +|+++++
T Consensus 248 ~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 302 (302)
T 1iz0_A 248 LREGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL 302 (302)
T ss_dssp TTCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred hhhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 1 2245788888 88899775 458899999999999999988765 7999864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=331.09 Aligned_cols=307 Identities=16% Similarity=0.218 Sum_probs=250.6
Q ss_pred hhhhhhhhhhccC--C----CCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeC
Q 016933 7 LILTCKAAVAWEA--G----KPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVG 80 (380)
Q Consensus 7 ~~~~~~a~~~~~~--~----~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG 80 (380)
.+++|||+++.+. | +.+++++++.|+|++|||||||.++|||+.|..+ . ....+|.++|||++|+|++.
T Consensus 4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv~~- 78 (333)
T 1v3u_A 4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVVES- 78 (333)
T ss_dssp CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEEEE-
T ss_pred ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEEec-
Confidence 3567999999874 3 2389999999999999999999999999988732 1 12356889999999999995
Q ss_pred CCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccc
Q 016933 81 EGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGC 160 (380)
Q Consensus 81 ~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~ 160 (380)
++++|++||||++. |+|+||+.++.+.
T Consensus 79 -~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~ 105 (333)
T 1v3u_A 79 -KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKG 105 (333)
T ss_dssp -SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTT
T ss_pred -CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHH
Confidence 57899999999843 4899999999999
Q ss_pred eEeCCCC----CCccc-hhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH
Q 016933 161 VAKINPL----APLDK-VCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE 234 (380)
Q Consensus 161 ~~~~p~~----~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~ 234 (380)
++++|++ +++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+
T Consensus 106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~ 184 (333)
T 1v3u_A 106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA 184 (333)
T ss_dssp EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 9999997 88887 58899999999999878889999999999997 9999999999999999 9999999999999
Q ss_pred HHHhcCCceEecCCC-CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCc----ee-ecc
Q 016933 235 EAKKFGVTDFVNTSE-HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDA----VF-MTK 308 (380)
Q Consensus 235 ~~~~lG~~~vi~~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~----~~-~~~ 308 (380)
.++++|++.++|+.+ .+ +.+.+.+.+.+++|++||++|. ..+..++++++++ |+++.+|...... .. ..+
T Consensus 185 ~~~~~g~~~~~d~~~~~~--~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~ 260 (333)
T 1v3u_A 185 YLKQIGFDAAFNYKTVNS--LEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPS 260 (333)
T ss_dssp HHHHTTCSEEEETTSCSC--HHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCCC-------CCBCCC
T ss_pred HHHhcCCcEEEecCCHHH--HHHHHHHHhCCCCeEEEECCCh-HHHHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcC
Confidence 999999999988876 44 7778887776689999999998 6789999999997 9999999764311 11 112
Q ss_pred cc-ccccccEEEeeeecCCC---CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEec
Q 016933 309 PI-NVLNERTLKGTFFGNYK---PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISM 378 (380)
Q Consensus 309 ~~-~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~ 378 (380)
.. .+.+++++.|+..+.+. ..+.++++++++++|++++... ..++|+++++||+.+++++. +|+||++
T Consensus 261 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 333 (333)
T 1v3u_A 261 PESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH--VTKGFENMPAAFIEMLNGANLGKAVVTA 333 (333)
T ss_dssp HHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEE--EEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred HHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccc--cccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 22 23488999998654331 1235678999999998887643 45799999999999988775 7999874
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=366.49 Aligned_cols=300 Identities=19% Similarity=0.232 Sum_probs=251.4
Q ss_pred hccCCCC--eEEEEeec--CCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCCE
Q 016933 16 AWEAGKP--LIIQDVEV--APPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGDH 91 (380)
Q Consensus 16 ~~~~~~~--~~~~~~~~--p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gdr 91 (380)
+..+|.+ +++++.+. |+|++|||+|||.++|||++|+.++.|..+ .|.++|||++|+|+++|++|++|++|||
T Consensus 215 ~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~vGDr 291 (795)
T 3slk_A 215 ATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLAPGDR 291 (795)
T ss_dssp ESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSCTTCE
T ss_pred cCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCCCCCE
Confidence 3455544 77777764 568999999999999999999999888553 4567999999999999999999999999
Q ss_pred EEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCcc
Q 016933 92 VLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLD 171 (380)
Q Consensus 92 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~ 171 (380)
|+... .|+|+||++++.+.++++|++++++
T Consensus 292 V~~~~--------------------------------------------------~G~~ae~~~v~~~~~~~iP~~ls~~ 321 (795)
T 3slk_A 292 VMGMI--------------------------------------------------PKAFGPLAVADHRMVTRIPAGWSFA 321 (795)
T ss_dssp EEECC--------------------------------------------------SSCSSSEEEEETTSEEECCTTCCHH
T ss_pred EEEEe--------------------------------------------------cCCCcCEEEeehHHEEECCCCCCHH
Confidence 98541 2589999999999999999999999
Q ss_pred chhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 172 KVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 172 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
+||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++ |.+.++ +|+++++++.+.
T Consensus 322 ~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~~ 398 (795)
T 3slk_A 322 RAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRTC 398 (795)
T ss_dssp HHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSSS
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCCh
Confidence 999999999999999888999999999999997 9999999999999999 899987655 666666 999999998876
Q ss_pred CccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC--
Q 016933 251 DRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK-- 327 (380)
Q Consensus 251 ~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-- 327 (380)
+ +.+.+++.+++ ++|+|||++|+ +.+..++++++++ |+++.+|.......... ....+++++.+..+....
T Consensus 399 ~--~~~~i~~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~-Gr~v~iG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 472 (795)
T 3slk_A 399 D--FEQQFLGATGGRGVDVVLNSLAG-EFADASLRMLPRG-GRFLELGKTDVRDPVEV--ADAHPGVSYQAFDTVEAGPQ 472 (795)
T ss_dssp T--HHHHHHHHSCSSCCSEEEECCCT-TTTHHHHTSCTTC-EEEEECCSTTCCCHHHH--HHHSSSEEEEECCGGGGHHH
T ss_pred h--HHHHHHHHcCCCCeEEEEECCCc-HHHHHHHHHhcCC-CEEEEeccccccCcccc--cccCCCCEEEEeeccccCHH
Confidence 6 99999999988 99999999998 7889999999997 99999997653222111 112256666665432111
Q ss_pred -CCCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 328 -PRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 328 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
..+.+.++++++++|++++ ++++.|+++++++||+.++++++ +|+||+++
T Consensus 473 ~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~ 524 (795)
T 3slk_A 473 RIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLVLTMP 524 (795)
T ss_dssp HHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence 1235788999999998765 47899999999999999999887 69999875
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=328.93 Aligned_cols=311 Identities=18% Similarity=0.180 Sum_probs=248.3
Q ss_pred hhhhhhhccCCC-CeEEE--EeecCC-CCCCeEEEEEeeeecCcccchhhccCCCC----CCCCccccccccEEEEE--e
Q 016933 10 TCKAAVAWEAGK-PLIIQ--DVEVAP-PQAMEVRIKIKYTSLCRTDLYFWESKGQT----PLFPRIFGHEAAGVVES--V 79 (380)
Q Consensus 10 ~~~a~~~~~~~~-~~~~~--~~~~p~-~~~~eVlV~v~~~~l~~~D~~~~~g~~~~----~~~p~v~G~e~vG~V~~--v 79 (380)
.|+++++..++. .++++ +++.|. |++|||||||.++|+|+.|. .+.|.... ..+|+++|||++|++++ +
T Consensus 9 ~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV 87 (345)
T 2j3h_A 9 ILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRII 87 (345)
T ss_dssp EECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEE
T ss_pred EEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEE
Confidence 356655555663 38888 888886 89999999999999988875 34443321 24689999999999999 9
Q ss_pred CCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc
Q 016933 80 GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG 159 (380)
Q Consensus 80 G~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~ 159 (380)
|+++++|++||||+.. |+|+||++++.+
T Consensus 88 ~~~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~ 115 (345)
T 2j3h_A 88 ESGHPDYKKGDLLWGI----------------------------------------------------VAWEEYSVITPM 115 (345)
T ss_dssp EECSTTCCTTCEEEEE----------------------------------------------------EESBSEEEECCC
T ss_pred ecCCCCCCCCCEEEee----------------------------------------------------cCceeEEEeccc
Confidence 9999999999999843 489999999987
Q ss_pred c--eEeCCC---CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 160 C--VAKINP---LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 160 ~--~~~~p~---~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
. ++++|+ .++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.
T Consensus 116 ~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~ 193 (345)
T 2j3h_A 116 THAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKV 193 (345)
T ss_dssp TTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred ccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 6 999996 35555 67889999999999878899999999999997 9999999999999999 899999999999
Q ss_pred HHHH-hcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC----ceeecc
Q 016933 234 EEAK-KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD----AVFMTK 308 (380)
Q Consensus 234 ~~~~-~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~ 308 (380)
+.++ ++|++.++|+.+.+ ++.+.+++.+++++|++||++|. ..+..++++++++ |+++.+|..... .....+
T Consensus 194 ~~~~~~~g~~~~~d~~~~~-~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~ 270 (345)
T 2j3h_A 194 DLLKTKFGFDDAFNYKEES-DLTAALKRCFPNGIDIYFENVGG-KMLDAVLVNMNMH-GRIAVCGMISQYNLENQEGVHN 270 (345)
T ss_dssp HHHHHTSCCSEEEETTSCS-CSHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGTTCSSCCCBSC
T ss_pred HHHHHHcCCceEEecCCHH-HHHHHHHHHhCCCCcEEEECCCH-HHHHHHHHHHhcC-CEEEEEccccccccCCcccccc
Confidence 9998 79999999886531 26667777765689999999998 7889999999997 999999875421 012222
Q ss_pred cc-ccccccEEEeeeecCCCC--CCChHHHHHHHHcCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecCC
Q 016933 309 PI-NVLNERTLKGTFFGNYKP--RTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISMED 380 (380)
Q Consensus 309 ~~-~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~~ 380 (380)
.. .+.+++++.|+..+.+.. .+.+.++++++++|++++ .+.+.|+|+++++||+.+++++. +|+|+.+++
T Consensus 271 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~--~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 344 (345)
T 2j3h_A 271 LSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITY--VEDVADGLEKAPEALVGLFHGKNVGKQVVVVAR 344 (345)
T ss_dssp TTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCC--CEEEEESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred HHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcC--cccccCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 22 234888998876543211 123788999999998764 46678999999999999998876 699998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=312.88 Aligned_cols=291 Identities=16% Similarity=0.203 Sum_probs=234.2
Q ss_pred eEEEEeecCC-CC--CCeEEEEEeeeecCcccchhhccCCCCC-------CCCccccccccEEEEEeCCCCCCCCCCCEE
Q 016933 23 LIIQDVEVAP-PQ--AMEVRIKIKYTSLCRTDLYFWESKGQTP-------LFPRIFGHEAAGVVESVGEGVSDLEVGDHV 92 (380)
Q Consensus 23 ~~~~~~~~p~-~~--~~eVlV~v~~~~l~~~D~~~~~g~~~~~-------~~p~v~G~e~vG~V~~vG~~v~~~~~GdrV 92 (380)
+.+.+.+... +. ++||+|+|.++|+|+.|+.+..|..+.. ..|.++|+|++|+| ++||||
T Consensus 1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A 1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence 5555544332 22 7899999999999999999988865321 24678999999988 279999
Q ss_pred EecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCccc
Q 016933 93 LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK 172 (380)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~~~ 172 (380)
+... ..|+|+||++++.+.++++|+++++++
T Consensus 1614 ~g~~-------------------------------------------------~~G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A 1614 MGMV-------------------------------------------------PAEGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp EEEC-------------------------------------------------SSCCSBSEEECCGGGEEECCTTSCHHH
T ss_pred EEee-------------------------------------------------cCCceeeEEEcccceEEEeCCCCCHHH
Confidence 8431 125899999999999999999999999
Q ss_pred hhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecC
Q 016933 173 VCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNT 247 (380)
Q Consensus 173 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~ 247 (380)
||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++++.+++|.+++++ +|+++++++
T Consensus 1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~ 1723 (2512)
T 2vz8_A 1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANS 1723 (2512)
T ss_dssp HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEES
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecC
Confidence 99999999999999888899999999999986 9999999999999999 89999999999999986 789999988
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
.+.+ +.+.+++.+++ ++|+|||++++ +.+..++++++++ |+++.+|..............+.+++++.++.....
T Consensus 1724 ~~~~--~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 1799 (2512)
T 2vz8_A 1724 RDTS--FEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQH-GRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSL 1799 (2512)
T ss_dssp SSSH--HHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEE-EEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGT
T ss_pred CCHH--HHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCC-cEEEEeecccccccCcccccccccCCcEEEeeHHHH
Confidence 7654 88889888887 89999999985 8899999999997 999999864211111122233558899988765432
Q ss_pred CC--CCChHHHHHHHH----cCCCCCCCceeeeeccccHHHHHHHHHcCCc-eeEEEecC
Q 016933 327 KP--RTDLPSVVDMYM----NKQLELEKFITHRIPFSEINKAFEYMVKGEG-LRCIISME 379 (380)
Q Consensus 327 ~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~a~~~l~~~~~-~Kvvi~~~ 379 (380)
.. .+.+.++++++. ++++ .++++++|+++++++|++.+++++. +|+||+++
T Consensus 1800 ~~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A 1800 FEEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecHHHHHHHHHhhhccCccceEEEECC
Confidence 21 123566666554 4544 4557899999999999999998877 69999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=173.90 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=137.7
Q ss_pred cceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH
Q 016933 159 GCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~ 237 (380)
+.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus 2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS 80 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 4678999999999999999999999999877789999999999996 9999999999999999 8999999999999999
Q ss_pred hcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCC--Cceeecccccccc
Q 016933 238 KFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK--DAVFMTKPINVLN 314 (380)
Q Consensus 238 ~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~ 314 (380)
++|++.++++.+.+ +.+.+.+.+.+ ++|++||++|. ..+..++++++++ |+++.+|.... ...+.. ..+.+
T Consensus 81 ~~g~~~~~d~~~~~--~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~--~~~~~ 154 (198)
T 1pqw_A 81 RLGVEYVGDSRSVD--FADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGL--AALAK 154 (198)
T ss_dssp TTCCSEEEETTCST--HHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEG--GGGTT
T ss_pred HcCCCEEeeCCcHH--HHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhccC-CEEEEEcCCCCcCcCcCCh--hHhcC
Confidence 99998888877654 77777777665 89999999986 7889999999997 99999997642 122222 22447
Q ss_pred ccEEEeeee------cCCCCCCChHHHHHHHHcCCCCCC
Q 016933 315 ERTLKGTFF------GNYKPRTDLPSVVDMYMNKQLELE 347 (380)
Q Consensus 315 ~~~i~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 347 (380)
++++.++.. ......+.++++++++++|++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~ 193 (198)
T 1pqw_A 155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL 193 (198)
T ss_dssp TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence 788876432 110112457889999999988765
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-11 Score=105.35 Aligned_cols=168 Identities=10% Similarity=0.064 Sum_probs=110.3
Q ss_pred CCCCCEEEecC-------ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec
Q 016933 86 LEVGDHVLPVF-------TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS 158 (380)
Q Consensus 86 ~~~GdrV~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~ 158 (380)
|++||||++.+ ...||.|.+|+.|.++.|+..... .|+..+
T Consensus 4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~--------------------------~G~~~~------ 51 (248)
T 2yvl_A 4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKP--------------------------EGVKIN------ 51 (248)
T ss_dssp CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCC--------------------------TTEEET------
T ss_pred CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCC--------------------------CCCEEE------
Confidence 89999999988 778889999999988888743211 123222
Q ss_pred cceEeCCCCCCccchh-----hcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 159 GCVAKINPLAPLDKVC-----ILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 159 ~~~~~~p~~~~~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
..+++.|+.....+.+ .+..+...+ .+.....++++++||.+|+| .|..++.+++. +. +|++++.+++..
T Consensus 52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~ 126 (248)
T 2yvl_A 52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF--YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFY 126 (248)
T ss_dssp TEEEECCCHHHHHHHTSCCSSCCCCHHHHH--HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHH
T ss_pred EEEEeCCCHHHHHHhcCcCCCCcccchhHH--HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHH
Confidence 3333333322111111 111121222 23456778899999999998 69999999998 66 999999999998
Q ss_pred HHHHhc----CC-ceE-ecCCCCCccHHHHHHHH-hCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 234 EEAKKF----GV-TDF-VNTSEHDRPIQEVIAEM-TNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 234 ~~~~~l----G~-~~v-i~~~~~~~~~~~~~~~~-~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.+++. |. +.+ +...+ +.+ .. ..+.+|+|+...+.+ ..+..+.+.|+++ |++++...
T Consensus 127 ~~a~~~~~~~~~~~~~~~~~~d----~~~---~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 191 (248)
T 2yvl_A 127 KTAQKNLKKFNLGKNVKFFNVD----FKD---AEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP 191 (248)
T ss_dssp HHHHHHHHHTTCCTTEEEECSC----TTT---SCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred HHHHHHHHHcCCCCcEEEEEcC----hhh---cccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 888763 43 111 11111 111 01 123799999888766 7889999999997 99987754
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-11 Score=117.05 Aligned_cols=183 Identities=17% Similarity=0.155 Sum_probs=128.5
Q ss_pred ccccccccEEEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCcccccc
Q 016933 66 RIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFL 145 (380)
Q Consensus 66 ~v~G~e~vG~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~ 145 (380)
...|++.++.|..+|++++++.+|++++.-.... ++.. ..
T Consensus 75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~~~----------------~~ 114 (404)
T 1gpj_A 75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AYDR----------------AA 114 (404)
T ss_dssp EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HHHH----------------HH
T ss_pred eecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HHHH----------------HH
Confidence 3578999999999999999999999874211000 0000 00
Q ss_pred CCcceeeEEEEeccceEeCCCCCCccchhhcchhhhhhhhhhhhcc---CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcE
Q 016933 146 GTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA---KPERGSSVAVFGLGAVGLAAAEGARIAGASR 222 (380)
Q Consensus 146 ~~G~~a~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~ 222 (380)
..|++++|+..+...++.+|+.++.+.++. ..++.++|.++.... .-.+|++|+|+|+|.+|.++++.++..|+.+
T Consensus 115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~ 193 (404)
T 1gpj_A 115 RLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA 193 (404)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred HcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence 014677887777788889998887777655 346678877643211 1257899999999999999999999999888
Q ss_pred EEEEcCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHH--HHHHH--h--hcCCcEEEE
Q 016933 223 IIGVDRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMI--SAFEC--V--HDGWGVAVL 295 (380)
Q Consensus 223 vi~~~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~--~~~~~--l--~~~~G~~v~ 295 (380)
|++++++.++. ++++++|++ ++++.+ +.+.+ .++|+|+++++.+..+. ..++. + +++ +..++
T Consensus 194 V~v~~r~~~ra~~la~~~g~~-~~~~~~----l~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~ 262 (404)
T 1gpj_A 194 VLVANRTYERAVELARDLGGE-AVRFDE----LVDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILI 262 (404)
T ss_dssp EEEECSSHHHHHHHHHHHTCE-ECCGGG----HHHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEE
T ss_pred EEEEeCCHHHHHHHHHHcCCc-eecHHh----HHHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEE
Confidence 99999999886 778889986 333321 33322 26899999998754432 45555 3 454 77777
Q ss_pred EcCCC
Q 016933 296 VGVPS 300 (380)
Q Consensus 296 ~g~~~ 300 (380)
++...
T Consensus 263 vdia~ 267 (404)
T 1gpj_A 263 IDIAN 267 (404)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 77654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-08 Score=90.29 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--EecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--FVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+++|+|+|+|.+|++++++++.+|+ +|++++++++|.+.+++++++. +++.+.. .+.+.++ ++|+|++|+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~DvVI~~~ 238 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSA--EIETAVA-----EADLLIGAV 238 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHH--HHHHHHH-----TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCHH--HHHHHHc-----CCCEEEECC
Confidence 4899999999999999999999999 9999999999999998887654 3332221 1333221 699999999
Q ss_pred cChhh------HHHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNIDN------MISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~~------~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.. ....++.++++ ++++.++...
T Consensus 239 ~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~ 270 (361)
T 1pjc_A 239 LVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQ 270 (361)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTT
T ss_pred CcCCCCCCeecCHHHHhhCCCC-CEEEEEecCC
Confidence 87542 56788999997 9999998754
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-08 Score=92.17 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCC---------------C--ccHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEH---------------D--RPIQE 256 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~---------------~--~~~~~ 256 (380)
++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+ ++.++. + ....+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 68999999999999999999999999 79999999999999999998755 233210 0 00112
Q ss_pred HHHHHhCCCccEEEEcc---cChh--h-HHHHHHHhhcCCcEEEEEcCCCCCc-eeeccccc-cccccEEEeeeecCCCC
Q 016933 257 VIAEMTNGGVDRSVECT---GNID--N-MISAFECVHDGWGVAVLVGVPSKDA-VFMTKPIN-VLNERTLKGTFFGNYKP 328 (380)
Q Consensus 257 ~~~~~~~~~~d~v~d~~---g~~~--~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~-~~~~~~i~g~~~~~~~~ 328 (380)
.+.+... ++|+|++++ |.+. . ....++.++++ +.++.++...+.. ....+... ..+++++.++... .
T Consensus 250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~---p 324 (384)
T 1l7d_A 250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNV---P 324 (384)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSG---G
T ss_pred HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCC---c
Confidence 2444433 699999999 5322 3 36889999997 9999998643221 11111112 2377888886532 1
Q ss_pred CCChHHHHHHHHcCCCC
Q 016933 329 RTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~~~ 345 (380)
.....++.+++.++.+.
T Consensus 325 ~~~~~~a~~l~~~~~~~ 341 (384)
T 1l7d_A 325 SRVAADASPLFAKNLLN 341 (384)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhHHH
Confidence 22345577888777554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-07 Score=83.48 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|++...+.... ..+.+.+ . ++|+|++|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~-~~l~~~l----~-~aDvVi~~~ 239 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSSA-YELEGAV----K-RADLVIGAV 239 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECCH-HHHHHHH----H-HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCCH-HHHHHHH----c-CCCEEEECC
Confidence 57999999999999999999999999 99999999999988877 777542222111 1132222 1 589999999
Q ss_pred cChhh------HHHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNIDN------MISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~~------~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.. ....++.++++ +.++.++...
T Consensus 240 ~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~ 271 (377)
T 2vhw_A 240 LVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQ 271 (377)
T ss_dssp CCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGT
T ss_pred CcCCCCCcceecHHHHhcCCCC-cEEEEEecCC
Confidence 87543 67888999997 9999998543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-07 Score=86.19 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=84.7
Q ss_pred hhhhhhhhhhhcc-CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHH
Q 016933 179 GVSTGLGATLNVA-KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEV 257 (380)
Q Consensus 179 ~~~ta~~~l~~~~-~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~ 257 (380)
...++|.++.+.. ...+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++ +++ +.+.
T Consensus 256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e~ 326 (494)
T 3ce6_A 256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEEA 326 (494)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHH
T ss_pred hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHHH
Confidence 3445566543322 26789999999999999999999999999 999999999999999999986 321 3222
Q ss_pred HHHHhCCCccEEEEcccChhhHH-HHHHHhhcCCcEEEEEcCCC
Q 016933 258 IAEMTNGGVDRSVECTGNIDNMI-SAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 258 ~~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 300 (380)
+ .++|+|++++|....+. ..++.++++ ++++.+|...
T Consensus 327 l-----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~ 364 (494)
T 3ce6_A 327 I-----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD 364 (494)
T ss_dssp G-----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG
T ss_pred H-----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC
Confidence 1 25899999999877666 889999997 9999998754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=82.29 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe-cCCC----C-------CccH----HHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV-NTSE----H-------DRPI----QEVI 258 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~----~-------~~~~----~~~~ 258 (380)
++++|+|+|+|.+|++++++|+.+|+ +|++++++.++.+.++++|++.+. +..+ . +.++ .+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 57899999999999999999999999 899999999999999999987542 2110 0 0011 1123
Q ss_pred HHHhCCCccEEEEcccCh-----hh-HHHHHHHhhcCCcEEEEEcCCCCC-ceeeccc--cccccccEEEeee
Q 016933 259 AEMTNGGVDRSVECTGNI-----DN-MISAFECVHDGWGVAVLVGVPSKD-AVFMTKP--INVLNERTLKGTF 322 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~--~~~~~~~~i~g~~ 322 (380)
.+... ++|+|+++++.+ .+ ...+++.++++ +.++.++...+. ....... ....+++++.|..
T Consensus 250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~ 320 (401)
T 1x13_A 250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT 320 (401)
T ss_dssp HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence 33333 589999996332 22 36889999997 999999864322 1111111 1234788888865
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=79.34 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|.+...+..+. ..+.+.++ ++|++++++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~-~~l~~~~~-----~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTATE-ANIKKSVQ-----HADLLIGAV 237 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECCH-HHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCCH-HHHHHHHh-----CCCEEEECC
Confidence 45899999999999999999999999 99999999999888876 777532332221 11323222 589999999
Q ss_pred cChh------hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNID------NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~------~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+. ....+++.++++ |+++.++...
T Consensus 238 g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~ 269 (369)
T 2eez_A 238 LVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQ 269 (369)
T ss_dssp C-------CCSCHHHHTTSCTT-CEEEECC---
T ss_pred CCCccccchhHHHHHHHhhcCC-CEEEEEecCC
Confidence 8753 156788999996 9999998764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=74.75 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC-C---CC----------CccH----HH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT-S---EH----------DRPI----QE 256 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~-~---~~----------~~~~----~~ 256 (380)
++.+|+|+|+|.+|+.++++++.+|+ +|++.+++..+++.++++|++.+... . +. ...+ .+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 57899999999999999999999999 89999999999999999998643210 0 00 0001 12
Q ss_pred HHHHHhCCCccEEEEcccChh------hHHHHHHHhhcCCcEEEEEcCC
Q 016933 257 VIAEMTNGGVDRSVECTGNID------NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 257 ~~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+.+... +.|+||.++..+. ....+++.++++ ..++.++..
T Consensus 268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d 314 (405)
T 4dio_A 268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVE 314 (405)
T ss_dssp HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGG
T ss_pred HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCC
Confidence 2333322 6999999975332 356899999997 999988754
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=72.67 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe-cCCC--CC-------c----cHHHHHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV-NTSE--HD-------R----PIQEVIAE 260 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~--~~-------~----~~~~~~~~ 260 (380)
++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++.+.++++|++.+. +.+. .. . .-.+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 67899999999999999999999999 899999999999999999986431 1000 00 0 01122333
Q ss_pred HhCCCccEEEEcccChh------hHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 261 MTNGGVDRSVECTGNID------NMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
.. ..+|+||.++..+. ....+++.++++ +.++.++...+
T Consensus 262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G 306 (381)
T 3p2y_A 262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG 306 (381)
T ss_dssp HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence 32 36999999874321 347899999997 99999886543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.7e-06 Score=72.60 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc----CC-ceEecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF----GV-TDFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l----G~-~~vi~~~~~~~~~~~~~~~ 260 (380)
+.....+.++++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++. |. +.+ .....+ +.+.
T Consensus 104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d--~~~~--- 176 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKVRD--ISEG--- 176 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEECCC--GGGC---
T ss_pred HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEECC--HHHc---
Confidence 34556788999999999876 888889999864 33999999999988887763 54 222 111111 1111
Q ss_pred HhCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 261 MTNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+..+.+|+|+.....+ ..+..+.+.|+++ |.++++..
T Consensus 177 ~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 214 (277)
T 1o54_A 177 FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP 214 (277)
T ss_dssp CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 1223799998766654 6788999999997 99887754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=63.76 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
...++++|+|+|+|.+|...++.++..|+ +|+++++++++.+.++ +.|...+ ..+..+ .+.+.+....++|+||
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~-~~d~~~---~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTV-VGDAAE---FETLKECGMEKADMVF 89 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEE-ESCTTS---HHHHHTTTGGGCSEEE
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEE-EecCCC---HHHHHHcCcccCCEEE
Confidence 34567899999999999999999999999 8999999999988877 6776533 222222 1223332123699999
Q ss_pred EcccChhhHHHHHHHhhc
Q 016933 271 ECTGNIDNMISAFECVHD 288 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~ 288 (380)
.+++.......+...++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (155)
T 2g1u_A 90 AFTNDDSTNFFISMNARY 107 (155)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 999986655555555554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.98 E-value=6e-06 Score=73.22 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.++.+||.+|+|. |..+..+++.. |. +|++++.+++..+.+++.+... ++..+..+ + ....+.+|+|+.
T Consensus 84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~--~-----~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHR--L-----PFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTS--C-----SBCTTCEEEEEE
T ss_pred CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcchhh--C-----CCCCCceeEEEE
Confidence 6788999999987 88999999986 66 9999999999999998876432 22222111 0 012247999995
Q ss_pred cccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 272 CTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
. .....+..+.+.|+++ |++++...
T Consensus 155 ~-~~~~~l~~~~~~L~pg-G~l~~~~~ 179 (269)
T 1p91_A 155 I-YAPCKAEELARVVKPG-GWVITATP 179 (269)
T ss_dssp E-SCCCCHHHHHHHEEEE-EEEEEEEE
T ss_pred e-CChhhHHHHHHhcCCC-cEEEEEEc
Confidence 4 4457899999999997 99887754
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.9e-05 Score=57.04 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+.+|+|+|+|.+|...++.+...|..+|+++++++++.+.++..+...+. .+-.+ . +.+.+... ++|+||++++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-~d~~~--~-~~~~~~~~-~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQ-VDAKD--E-AGLAKALG-GFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEE-CCTTC--H-HHHHHHTT-TCSEEEECSC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEE-ecCCC--H-HHHHHHHc-CCCEEEECCC
Confidence 346899999999999999999999933899999999999888877765432 22222 1 23434333 6999999998
Q ss_pred ChhhHHHHHHHhhcCCcEEE
Q 016933 275 NIDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v 294 (380)
..........+...+ ...+
T Consensus 79 ~~~~~~~~~~~~~~g-~~~~ 97 (118)
T 3ic5_A 79 FFLTPIIAKAAKAAG-AHYF 97 (118)
T ss_dssp GGGHHHHHHHHHHTT-CEEE
T ss_pred chhhHHHHHHHHHhC-CCEE
Confidence 744433444444443 4443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=70.22 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=75.1
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++++++++||.+|+|..++.++.+|+..|+ +|++++.+++..+.+++. |.+.+ .....+ .. ++..+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~gD--a~----~l~d~ 187 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGV-NVITGD--ET----VIDGL 187 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSE-EEEESC--GG----GGGGC
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCe-EEEECc--hh----hCCCC
Confidence 34688999999999998878888888888898 999999999999888763 54322 111222 11 12235
Q ss_pred CccEEEEcccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSVECTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.||+|+.....+ ..+..+.+.|+|+ |++++...
T Consensus 188 ~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~ 223 (298)
T 3fpf_A 188 EFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY 223 (298)
T ss_dssp CCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred CcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence 899999765543 5788999999997 99987754
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.5e-06 Score=65.36 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=72.3
Q ss_pred hhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHH-HHhcCCceEecCCCCCccHHHHH
Q 016933 180 VSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVI 258 (380)
Q Consensus 180 ~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~ 258 (380)
.++++.++ +......+++|+|+|+|.+|.+.++.++..|+ +|+++++++++.+. .+++|.+. ...++ +.+.+
T Consensus 6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~-~~~~~----~~~~~ 78 (144)
T 3oj0_A 6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEY-VLIND----IDSLI 78 (144)
T ss_dssp CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEE-EECSC----HHHHH
T ss_pred ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCce-EeecC----HHHHh
Confidence 34555553 33333348999999999999999998888899 59999999988754 56677532 22322 33333
Q ss_pred HHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 259 AEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
. ++|+|+.+++.+..+.. .+.++++ +.++.++.+
T Consensus 79 ~-----~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p 112 (144)
T 3oj0_A 79 K-----NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNP 112 (144)
T ss_dssp H-----TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSS
T ss_pred c-----CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCC
Confidence 2 58999999987533222 2567775 778777664
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.2e-05 Score=69.04 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=77.6
Q ss_pred hhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh
Q 016933 184 LGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 184 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.++.+..+ .-.|++++|+|.|.+|...++.++.+|+ +|+++++++.+...+...|... .+ +.+.+
T Consensus 207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~v-~~-------Leeal---- 273 (435)
T 3gvp_A 207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFRL-VK-------LNEVI---- 273 (435)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-CC-------HHHHT----
T ss_pred HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCEe-cc-------HHHHH----
Confidence 344433333 4589999999999999999999999999 8999999988777677777532 11 32222
Q ss_pred CCCccEEEEcccChhhHH-HHHHHhhcCCcEEEEEcCCC
Q 016933 263 NGGVDRSVECTGNIDNMI-SAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~ 300 (380)
...|+++.|.|....+. ..++.++++ +.++.+|...
T Consensus 274 -~~ADIVi~atgt~~lI~~e~l~~MK~g-ailINvgrg~ 310 (435)
T 3gvp_A 274 -RQVDIVITCTGNKNVVTREHLDRMKNS-CIVCNMGHSN 310 (435)
T ss_dssp -TTCSEEEECSSCSCSBCHHHHHHSCTT-EEEEECSSTT
T ss_pred -hcCCEEEECCCCcccCCHHHHHhcCCC-cEEEEecCCC
Confidence 25899999988766665 889999997 9888888754
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=65.67 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-+|++|+|+|.|.+|.++++.++.+|+ +|++.+++.++.+.++++|+.. ++..+ +. ++. ...|+|+.++
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~~~----l~----~~l-~~aDvVi~~~ 221 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHISK----AA----QEL-RDVDVCINTI 221 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEGGG----HH----HHT-TTCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cChhh----HH----HHh-cCCCEEEECC
Confidence 468999999999999999999999999 9999999998887777888753 22111 22 222 3689999998
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
...-.-...++.++++ +.++.++...
T Consensus 222 p~~~i~~~~l~~mk~~-~~lin~ar~~ 247 (293)
T 3d4o_A 222 PALVVTANVLAEMPSH-TFVIDLASKP 247 (293)
T ss_dssp SSCCBCHHHHHHSCTT-CEEEECSSTT
T ss_pred ChHHhCHHHHHhcCCC-CEEEEecCCC
Confidence 7632234677888996 8888887643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00044 Score=57.29 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=63.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHH-hCCCccEEEEcc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEM-TNGGVDRSVECT 273 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~-~~~~~d~v~d~~ 273 (380)
+++|+|+|.|.+|...++.++.. |+ +|+++++++++.+.+++.|...+.. +..+. +.+.+. .-.++|+++.++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~---~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISG-DATDP---DFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEEC-CTTCH---HHHHTBCSCCCCCEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEc-CCCCH---HHHHhccCCCCCCEEEEeC
Confidence 57899999999999999999988 99 8999999999999999888764431 22221 223333 123799999999
Q ss_pred cChhhHHHHHHHhhc
Q 016933 274 GNIDNMISAFECVHD 288 (380)
Q Consensus 274 g~~~~~~~~~~~l~~ 288 (380)
+.......+...++.
T Consensus 114 ~~~~~~~~~~~~~~~ 128 (183)
T 3c85_A 114 PHHQGNQTALEQLQR 128 (183)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 985544444444444
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.66 E-value=3.3e-05 Score=70.90 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=68.1
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCC---------------ce--EecCCC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGV---------------TD--FVNTSE 249 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~---------------~~--vi~~~~ 249 (380)
.....+.++++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++... +. ++..+-
T Consensus 98 l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~ 176 (336)
T 2b25_A 98 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176 (336)
T ss_dssp HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence 4455788999999999876 8888888988763 499999999998888766211 11 221111
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+ . ...+..+.+|+|+-....+ ..+..+.+.|+++ |+++++..
T Consensus 177 ~~--~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 220 (336)
T 2b25_A 177 SG--A---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 220 (336)
T ss_dssp TC--C---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred HH--c---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 11 1 0111223699987654443 4588999999997 99987654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=66.64 Aligned_cols=93 Identities=25% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.-.|++++|+|.|.+|...++.++.+|+ +|+++++++.+...+...|... .+ +.+.+ ...|+|+.+
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~v-v~-------LeElL-----~~ADIVv~a 309 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFEV-VT-------LDDAA-----STADIVVTT 309 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE-CC-------HHHHG-----GGCSEEEEC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCcee-cc-------HHHHH-----hhCCEEEEC
Confidence 4688999999999999999999999999 9999998887766666667642 21 32222 148999999
Q ss_pred ccChhhH-HHHHHHhhcCCcEEEEEcCCC
Q 016933 273 TGNIDNM-ISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 273 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.|....+ ...+..++++ ..++.+|-..
T Consensus 310 tgt~~lI~~e~l~~MK~G-AILINvGRgd 337 (464)
T 3n58_A 310 TGNKDVITIDHMRKMKDM-CIVGNIGHFD 337 (464)
T ss_dssp CSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred CCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence 9876555 5888999997 8888887653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00089 Score=52.80 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.++|+|+|.|.+|...++.++..|. +|+++++++++.+.+++.|...+. -+..+. +.+++..-..+|+++-+++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~-gd~~~~---~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL-GNAANE---EIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE-SCTTSH---HHHHHTTGGGCSEEEECCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE-CCCCCH---HHHHhcCcccCCEEEEECCC
Confidence 4679999999999999999999999 999999999999999998886443 222221 22333322378999999987
Q ss_pred hhhHH---HHHHHhhcCCcEEEE
Q 016933 276 IDNMI---SAFECVHDGWGVAVL 295 (380)
Q Consensus 276 ~~~~~---~~~~~l~~~~G~~v~ 295 (380)
..... ...+.+.+. .+++.
T Consensus 82 ~~~n~~~~~~a~~~~~~-~~iia 103 (140)
T 3fwz_A 82 GYEAGEIVASARAKNPD-IEIIA 103 (140)
T ss_dssp HHHHHHHHHHHHHHCSS-SEEEE
T ss_pred hHHHHHHHHHHHHHCCC-CeEEE
Confidence 54322 344455564 55543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0002 Score=64.55 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+. +++..+ + .++. ...|+|+.++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~~~----l----~~~l-~~aDvVi~~~ 223 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHTDE----L----KEHV-KDIDICINTI 223 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEGGG----H----HHHS-TTCSEEEECC
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEchhh----H----HHHh-hCCCEEEECC
Confidence 468999999999999999999999999 999999999888777777864 322211 2 2222 3689999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+..-.-...++.++++ +.++.++...
T Consensus 224 p~~~i~~~~~~~mk~g-~~lin~a~g~ 249 (300)
T 2rir_A 224 PSMILNQTVLSSMTPK-TLILDLASRP 249 (300)
T ss_dssp SSCCBCHHHHTTSCTT-CEEEECSSTT
T ss_pred ChhhhCHHHHHhCCCC-CEEEEEeCCC
Confidence 8632234567788886 8888887643
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00016 Score=68.70 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++++|+|+|.+|.+.++.++..|+ +|+++++++.+.+.+...|++ +.+.++ . ...+|+++++.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~lee-----------~-~~~aDvVi~at 328 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLED-----------V-VSEADIFVTTT 328 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG-----------T-TTTCSEEEECS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHHH-----------H-HHhcCEEEeCC
Confidence 478999999999999999999999999 999999999888877777763 222111 0 12689999999
Q ss_pred cChhhHH-HHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDNMI-SAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~~~-~~~~~l~~~~G~~v~~g~~ 299 (380)
|..+.+. ..++.++++ +.++..|..
T Consensus 329 G~~~vl~~e~l~~mk~g-aiVvNaG~~ 354 (488)
T 3ond_A 329 GNKDIIMLDHMKKMKNN-AIVCNIGHF 354 (488)
T ss_dssp SCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred CChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence 9766654 488889996 888888864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00027 Score=61.81 Aligned_cols=105 Identities=21% Similarity=0.187 Sum_probs=73.2
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~ 261 (380)
+.....++++++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++. |....+.....+ +.+ ..
T Consensus 85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~---~~ 158 (255)
T 3mb5_A 85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD--IYE---GI 158 (255)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC--GGG---CC
T ss_pred HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc--hhh---cc
Confidence 34566788999999999875 888899999853 34999999999988887763 543211111111 111 11
Q ss_pred hCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+.....+ ..+..+.+.|+++ |+++++..
T Consensus 159 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 195 (255)
T 3mb5_A 159 EEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTP 195 (255)
T ss_dssp CCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred CCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEEC
Confidence 223699998776654 4789999999997 99987753
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00031 Score=62.42 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=72.5
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc-----C--CceEecCCCCCccHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF-----G--VTDFVNTSEHDRPIQEVI 258 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l-----G--~~~vi~~~~~~~~~~~~~ 258 (380)
+.....++++++||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++. | .+.+- ....+ +.+.
T Consensus 91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~-~~~~d--~~~~- 165 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR-LVVSD--LADS- 165 (280)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEE-EECSC--GGGC-
T ss_pred HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEE-EEECc--hHhc-
Confidence 3455678999999999988 7888899998763 33999999999988887763 4 22221 11111 1110
Q ss_pred HHHhCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 259 AEMTNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
....+.+|+|+.....+ ..+..+.+.|+++ |+++++..
T Consensus 166 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 204 (280)
T 1i9g_A 166 -ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 204 (280)
T ss_dssp -CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred -CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 01123799998766554 6788999999997 99888754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=63.09 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=73.1
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc-----CCceEecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF-----GVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l-----G~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.....++++++||-+|+|. |..++.+++.+| ..+|++++.+++..+.+++. |.+.+- ....+ +.+. .+
T Consensus 89 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~-~~~~d--~~~~--~~ 162 (258)
T 2pwy_A 89 VTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVR-FHLGK--LEEA--EL 162 (258)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEE-EEESC--GGGC--CC
T ss_pred HHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEE-EEECc--hhhc--CC
Confidence 4556788999999999885 888999999864 23999999999998888764 533221 11111 1110 01
Q ss_pred hCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+.....+ ..+..+.+.|+++ |+++++..
T Consensus 163 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 199 (258)
T 2pwy_A 163 EEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP 199 (258)
T ss_dssp CTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred CCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 123699998766654 6788999999997 99988754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0012 Score=52.01 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.++++|+|+|.+|...++.+...|. +|+++++++++.+.+++.|...+. .+..+. +.+++..-.++|+++.+++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~-gd~~~~---~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVI-ADPTDE---SFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE-CCTTCH---HHHHHSCCTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEE-CCCCCH---HHHHhCCcccCCEEEEecCC
Confidence 4679999999999999999999999 899999999999999888865332 232221 22333322379999999997
Q ss_pred hh
Q 016933 276 ID 277 (380)
Q Consensus 276 ~~ 277 (380)
.+
T Consensus 81 ~~ 82 (141)
T 3llv_A 81 DE 82 (141)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0028 Score=55.05 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=67.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-e--cCCCCC--ccHHHHHHHHhCCCccEEE
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-V--NTSEHD--RPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i--~~~~~~--~~~~~~~~~~~~~~~d~v~ 270 (380)
++|||+|+ +++|.+.+......|+ +|+.+++++++.+.+.+-+.... + |..+.+ ..+.+.+.+.. +++|+++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiLV 80 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKL-QRIDVLV 80 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHc-CCCCEEE
Confidence 68999987 9999999988888999 99999999988877766554332 2 332221 12223333332 3799999
Q ss_pred EcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 271 ECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 271 d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++.|.. .....+...+.+++|+++.++..
T Consensus 81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~ 134 (247)
T 3ged_A 81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAST 134 (247)
T ss_dssp ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCG
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeec
Confidence 998742 12234445554434999988764
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00074 Score=53.12 Aligned_cols=76 Identities=13% Similarity=0.278 Sum_probs=55.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+++|+|+|+|.+|...++.+...|+ +|+++++++++.+.+++.|...+. .+..+ .+.+.+..-+++|+++.+++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~d~~~---~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANATE---ENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEE-CCTTC---HHHHHTTTGGGCSEEEECCCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEE-eCCCC---HHHHHhcCCCCCCEEEECCCC
Confidence 4679999999999999999999998 789999998888877776664332 22222 123333212369999999997
Q ss_pred h
Q 016933 276 I 276 (380)
Q Consensus 276 ~ 276 (380)
+
T Consensus 81 ~ 81 (144)
T 2hmt_A 81 N 81 (144)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0027 Score=54.63 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=66.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-ceE-ecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TDF-VNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+.++ ..+ .|.. +.+.+.. +++|+||+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~-~~~D~vi~ 90 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-------EDFSHAF-ASIDAVVF 90 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-------SCCGGGG-TTCSEEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-------HHHHHHH-cCCCEEEE
Confidence 4689999998 9999999998888999 99999999999888877776 443 2332 1222222 26999999
Q ss_pred cccChh-------------hHHHHHHHhhc-CCcEEEEEcCCC
Q 016933 272 CTGNID-------------NMISAFECVHD-GWGVAVLVGVPS 300 (380)
Q Consensus 272 ~~g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~ 300 (380)
+.|... ....+++.+.. +.++++.++...
T Consensus 91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 133 (236)
T 3e8x_A 91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG 133 (236)
T ss_dssp CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred CCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 998531 11233333332 226888887653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=57.39 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=70.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE---ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+ +++|.... .|..+.+ ..+.+.+.+.. +++|
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iD 105 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEA-GRID 105 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence 5799999987 9999999999999999 899999999887654 55765432 2333221 12333333333 3799
Q ss_pred EEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 268 RSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 268 ~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++++..|.. .....++..++++ |+++.++..
T Consensus 106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~ 161 (273)
T 4fgs_A 106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGST 161 (273)
T ss_dssp EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCG
T ss_pred EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeeh
Confidence 999998852 1234556667775 999988764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=56.90 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.|+++||+|+ +++|.+.+......|+ +|+.+++++++.+..+.-.+.. ..|..+.+ .+.+.+ +.. +++|+++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~v~~~~-~~~-g~iDiLVNN 85 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITDSQ-RLQRLF-EAL-PRLDVLVNN 85 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTCHH-HHHHHH-HHC-SCCSEEEEC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCCHH-HHHHHH-Hhc-CCCCEEEEC
Confidence 6899999987 9999999999999999 8999999887665332222211 22333321 233333 322 479999999
Q ss_pred ccCh-----------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 273 TGNI-----------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 273 ~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.|.. -....++..++..+|+|+.++..
T Consensus 86 AGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 135 (242)
T 4b79_A 86 AGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM 135 (242)
T ss_dssp CCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 8842 11234455555434999998764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00094 Score=56.37 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=70.7
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-e--EecCCCCCccHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-D--FVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~--vi~~~~~~~~~~~~~~~ 260 (380)
.....++++++||-+|+|. |..++.+|+. +. +|++++.+++..+.+++ .|.. . ++..+..+ .+.
T Consensus 48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-----~~~- 118 (204)
T 3njr_A 48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA-----ALA- 118 (204)
T ss_dssp HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG-----GGT-
T ss_pred HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh-----hcc-
Confidence 3455688899999999875 8888888887 77 99999999998888765 4544 2 22211111 011
Q ss_pred HhCCCccEEEEcccChh-hHHHHHHHhhcCCcEEEEEcCC
Q 016933 261 MTNGGVDRSVECTGNID-NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+.+|+|+...+... .+..+.+.|+++ |++++....
T Consensus 119 -~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~ 156 (204)
T 3njr_A 119 -DLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAVT 156 (204)
T ss_dssp -TSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEECS
T ss_pred -cCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEecC
Confidence 1136999987654322 688999999997 999877553
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00083 Score=62.82 Aligned_cols=91 Identities=24% Similarity=0.294 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|...+ + +.+.+ ...|+++.+.
T Consensus 209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~----s----L~eal-----~~ADVVilt~ 274 (436)
T 3h9u_A 209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL----L----VEDVV-----EEAHIFVTTT 274 (436)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC----C----HHHHT-----TTCSEEEECS
T ss_pred ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec----C----HHHHH-----hhCCEEEECC
Confidence 468999999999999999999999999 89999999888777777776422 1 33322 2589999988
Q ss_pred cChhhHH-HHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDNMI-SAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~~~-~~~~~l~~~~G~~v~~g~~ 299 (380)
+....+. ..++.++++ ..++.++-.
T Consensus 275 gt~~iI~~e~l~~MK~g-AIVINvgRg 300 (436)
T 3h9u_A 275 GNDDIITSEHFPRMRDD-AIVCNIGHF 300 (436)
T ss_dssp SCSCSBCTTTGGGCCTT-EEEEECSSS
T ss_pred CCcCccCHHHHhhcCCC-cEEEEeCCC
Confidence 8755554 677888996 888877743
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0076 Score=51.90 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-E--ecCCCCC--ccHHHHHHHHhCCCccE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d~ 268 (380)
++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ ++... . .|..+.+ ..+.+.+.+.. +.+|+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id~ 80 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWG-GLPEL 80 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHH-CSCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc-CCCcE
Confidence 578999997 9999998888888899 89999999887765543 33221 2 2332221 11222222222 37999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 81 lvnnAg~ 87 (235)
T 3l6e_A 81 VLHCAGT 87 (235)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999884
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0062 Score=53.43 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc--eE--ecCCCCCccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GA--VGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT--DF--VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~--~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~--~v--i~~~~~~~~~~~~~~~~~~ 263 (380)
.++++||+|+ |. +|.+.+......|+ +|+.++++++..+.+++ .+.. .+ .|..+.+ .+.+.+++...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA-EIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH-HHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH-HHHHHHHHHHH
Confidence 4689999986 65 99988888888899 89888888755544433 3331 12 2333322 23333332221
Q ss_pred --CCccEEEEcccC
Q 016933 264 --GGVDRSVECTGN 275 (380)
Q Consensus 264 --~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 84 ~~g~id~li~~Ag~ 97 (266)
T 3oig_A 84 QVGVIHGIAHCIAF 97 (266)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCeeEEEEcccc
Confidence 379999999874
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0041 Score=56.86 Aligned_cols=49 Identities=39% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
-+|++|.|.|.|.+|+.+++.++.+|+ +|++.+.+.++.++.+++|++.
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~ 221 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA 221 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEE
Confidence 478999999999999999999999999 8999988887766777777643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.012 Score=45.80 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ +|...+. .+..+ . +.+.+..-.++|+|+.+++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~-~d~~~--~-~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVIN-GDCTK--I-KTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEE-SCTTS--H-HHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEE-cCCCC--H-HHHHHcCcccCCEEEEeeC
Confidence 4579999999999999988888898 89999999988877764 5654332 22212 1 1232222237999999998
Q ss_pred Chh
Q 016933 275 NID 277 (380)
Q Consensus 275 ~~~ 277 (380)
...
T Consensus 79 ~~~ 81 (140)
T 1lss_A 79 KEE 81 (140)
T ss_dssp CHH
T ss_pred Cch
Confidence 753
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0096 Score=52.61 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCC-ce--Ee--cCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGV-TD--FV--NTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~-~~--vi--~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+. +.|. .. ++ |..+.+ .+.+.+.+..
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~ 108 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEE-DILSMFSAIRSQ 108 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHH-HHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHH-HHHHHHHHHHHh
Confidence 4688999997 9999999988888899 8999999887665442 2332 11 22 332221 2222222221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 109 ~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 109 HSGVDICINNAGL 121 (279)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 1379999999873
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0022 Score=53.82 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=72.0
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--EecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi~~~~~~~~~~~~~~~~ 261 (380)
.....++++++||-+|+|. |..++.+++.....+|++++.+++..+.+++ .|.+. ++..+..+ . +.
T Consensus 33 l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~---~~-- 104 (204)
T 3e05_A 33 LSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE--G---LD-- 104 (204)
T ss_dssp HHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT--T---CT--
T ss_pred HHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh--h---hh--
Confidence 4456788999999999874 8888999988644499999999998888866 34332 22211111 0 00
Q ss_pred hCCCccEEEEccc---ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 262 TNGGVDRSVECTG---NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 262 ~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+.+|+|+.... ....+..+.+.|+++ |++++....
T Consensus 105 ~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 144 (204)
T 3e05_A 105 DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAVT 144 (204)
T ss_dssp TSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEECB
T ss_pred cCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEecc
Confidence 0136999998754 235788899999997 999887543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=51.62 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCC---------cEEEEEcCChhHHHHHHhcCCceEe-cCCCCCccHHHHHHHH
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGA---------SRIIGVDRSSKRFEEAKKFGVTDFV-NTSEHDRPIQEVIAEM 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~---------~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~~~~~~~~~~~~~ 261 (380)
.++++++||-+|+|. |..++.+++..|. .+|++++.++.+. .-++ .++ ..+-.+..+.+.+...
T Consensus 19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~-~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGA-TFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTC-EEECSCCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCC-eEEEeccCCCHHHHHHHHHh
Confidence 368899999999987 8899999999873 4899999887431 0112 223 2221222233344444
Q ss_pred hCC-CccEEEE-----cccCh------------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNG-GVDRSVE-----CTGNI------------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~-~~d~v~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.++ .+|+|+. +++.. ..+..+.+.|+++ |++++...
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 146 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTW 146 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 444 7999994 33331 4577788999997 99987643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0027 Score=51.78 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=71.9
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~~ 262 (380)
.....++++++||-+|+|. |..++.+++..+..+|++++.+++..+.+++ .|.+ .++...+.. +.+.. .
T Consensus 18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~----~~~~~-~ 91 (178)
T 3hm2_A 18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP----RAFDD-V 91 (178)
T ss_dssp HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTT----GGGGG-C
T ss_pred HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchH----hhhhc-c
Confidence 3445678899999999875 8889999988744499999999998888875 3544 232111211 11111 1
Q ss_pred CCCccEEEEcccC--hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 263 NGGVDRSVECTGN--IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+.+|+|+..... ...+..+.+.|+++ |++++....
T Consensus 92 ~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~ 129 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAVT 129 (178)
T ss_dssp CSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEECS
T ss_pred CCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEeec
Confidence 1479999976543 24788999999997 999876543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=51.28 Aligned_cols=104 Identities=23% Similarity=0.265 Sum_probs=67.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~~~~~~~~~~~~~--~ 264 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+ ++.|.+.. .|..+. ....+.+.+... +
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~-~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDE-LAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCH-HHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCH-HHHHHHHHHHHHHCC
Confidence 5789999987 9999999998889999 999999998775443 34554332 222222 123333333322 3
Q ss_pred CccEEEEcccCh-------------------------hhHHHHHHHhh--cCCcEEEEEcCCC
Q 016933 265 GVDRSVECTGNI-------------------------DNMISAFECVH--DGWGVAVLVGVPS 300 (380)
Q Consensus 265 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~~G~~v~~g~~~ 300 (380)
++|+++++.|.. .....++..+. .++|+|+.++...
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~ 148 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT 148 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence 799999998852 12334555562 2248999998653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0016 Score=56.34 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh----
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT---- 262 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~---- 262 (380)
...++++||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++. |...-+.....+ ..+.+..+.
T Consensus 57 ~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~~~~~~~~~~~ 133 (239)
T 2hnk_A 57 KISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGS--ALETLQVLIDSKS 133 (239)
T ss_dssp HHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHCSS
T ss_pred HhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC--HHHHHHHHHhhcc
Confidence 34578899999987 5888999999874 23999999999988877663 543211111222 333333331
Q ss_pred ----------C-CCccEEEEcccCh---hhHHHHHHHhhcCCcEEEEEc
Q 016933 263 ----------N-GGVDRSVECTGNI---DNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 263 ----------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g 297 (380)
+ +.+|+|+...+.. ..+..+.+.|+++ |.+++..
T Consensus 134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 181 (239)
T 2hnk_A 134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN 181 (239)
T ss_dssp CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence 2 5799998776543 4568889999997 9988754
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0079 Score=52.63 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=65.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH---HhcCCce-E--ecCCCCC--ccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA---KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~---~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~ 265 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|... . .|..+.+ ..+.+.+.+.. ++
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-G~ 83 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF-GR 83 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence 5789999987 9999998888888899 888888877654443 3344422 2 2333322 12223333322 37
Q ss_pred ccEEEEcccCh------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 266 VDRSVECTGNI------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 266 ~d~v~d~~g~~------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+|+++++.|.. .....++..++.++|+|+.++..
T Consensus 84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 141 (258)
T 4gkb_A 84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK 141 (258)
T ss_dssp CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence 99999998841 12334555665434999998764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0034 Score=56.70 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=72.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.....++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+.....+ + .++
T Consensus 82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~----~~~- 152 (318)
T 2fk8_A 82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG--W----EDF- 152 (318)
T ss_dssp HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC--G----GGC-
T ss_pred HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC--h----HHC-
Confidence 34556788999999999876 8888899988888 999999999998888763 332111111111 1 111
Q ss_pred CCCccEEEEc-----ccC---hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 263 NGGVDRSVEC-----TGN---IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++.+|+|+.. ++. ...+..+.+.|+|+ |++++....
T Consensus 153 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 196 (318)
T 2fk8_A 153 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV 196 (318)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence 2579999876 332 34677888999997 999876554
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00098 Score=57.51 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=71.2
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.....++++++||-+|+| .|..++.+++..+. +|++++.+++..+.+++ .|...+ .....+ .. ..+..
T Consensus 84 ~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~d--~~---~~~~~ 155 (235)
T 1jg1_A 84 LEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNV-HVILGD--GS---KGFPP 155 (235)
T ss_dssp HHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESC--GG---GCCGG
T ss_pred HHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEECC--cc---cCCCC
Confidence 344578899999999988 78999999998874 99999999988887766 344322 111111 10 01112
Q ss_pred C-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 G-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+ ++|+|+...........+.+.|+++ |++++.-.
T Consensus 156 ~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~~ 190 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPVG 190 (235)
T ss_dssp GCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred CCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 2 5999998876655667889999997 98875533
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0088 Score=52.07 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=52.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+ ++++... .+ |..+. ..+.+.+.... -+.+|
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~g~id 82 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSE-ADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCH-HHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCH-HHHHHHHHHHHHHcCCCC
Confidence 4678999997 9999998888888899 899999988776554 3344322 22 22221 12222222221 13689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ~lv~~Ag~ 90 (253)
T 1hxh_A 83 VLVNNAGI 90 (253)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=56.00 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=71.4
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcC--CcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAG--ASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g--~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.....++++++||.+|+| .|..+..+++..| . +|++++.+++..+.+++. |.+.+- ....+ ......
T Consensus 70 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~-~~~~d--~~~~~~-- 142 (215)
T 2yxe_A 70 CELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVI-VIVGD--GTLGYE-- 142 (215)
T ss_dssp HHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEE-EEESC--GGGCCG--
T ss_pred HHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeE-EEECC--cccCCC--
Confidence 445578899999999988 5889999999886 5 999999999988887663 433221 11111 100000
Q ss_pred hCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+...........+.+.|+++ |++++.-.
T Consensus 143 ~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~ 178 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG 178 (215)
T ss_dssp GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred CCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence 1247999998876655667889999997 98876643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0071 Score=52.78 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=53.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ ++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id 84 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTL-GAID 84 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-SSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHh-CCCC
Confidence 5789999987 9999998888888899 89999999888766543 44432 22 332221 11222232322 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 85 ~lv~nAg~ 92 (255)
T 4eso_A 85 LLHINAGV 92 (255)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0085 Score=50.81 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=64.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+...+...+ .|..+.+ . ..+ +++|+||+++|.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~--~----~~~--~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLVLT--E----ADL--DSVDAVVDALSV 72 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGGCC--H----HHH--TTCSEEEECCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccccc--H----hhc--ccCCEEEECCcc
Confidence 5899998 9999999998888899 99999999988876655555433 2333333 2 122 368999999986
Q ss_pred h----------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 276 I----------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 276 ~----------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
. .....+++.+...+++++.++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 2 1234556666554368888853
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=50.94 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
+++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ +....++..+-.+. +.+.+... +++|++|
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~id~vi 81 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDW---EATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCH---HHHHHHHTTCCCCCEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCH---HHHHHHHHHcCCCCEEE
Confidence 4689999997 9999999998888999 89999999887665433 32223332222221 12333222 3699999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 82 ~~Ag~ 86 (244)
T 3d3w_A 82 NNAAV 86 (244)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 99874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.001 Score=57.34 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh-CCCc
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT-NGGV 266 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~-~~~~ 266 (380)
...++++||-+|+| .|..++.+++.....+|++++.+++..+.+++. |...-+.....+ ..+.+.... .+.+
T Consensus 51 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~f 127 (233)
T 2gpy_A 51 KMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD--ALQLGEKLELYPLF 127 (233)
T ss_dssp HHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC--GGGSHHHHTTSCCE
T ss_pred hccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC--HHHHHHhcccCCCc
Confidence 34578899999987 688899999987333999999999988887763 542111111111 111122222 3479
Q ss_pred cEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 267 DRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 267 d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+|+..... ...+..+.+.|+++ |.+++...
T Consensus 128 D~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 161 (233)
T 2gpy_A 128 DVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDNV 161 (233)
T ss_dssp EEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEETT
T ss_pred cEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEcC
Confidence 999876553 35677888999997 99887643
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0085 Score=53.12 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-HH----HHHhcCCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-FE----EAKKFGVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~----~~~~lG~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++ .+ .+++.|.+. ++ |..+. ..+.+.+.+...
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVV-EDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCH-HHHHHHHHHHHHHc
Confidence 4688999997 9999999988888899 88888777543 22 234445432 22 32221 112222222211
Q ss_pred CCccEEEEcccCh----------h---------------hHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI----------D---------------NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++|+++++.|.. + ....+...++.. |+++.++..
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 165 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 165 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence 3799999998842 1 123444555555 899998764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0072 Score=52.39 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceE-ecCCCCCccHHHHHHHHh--CCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v 269 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. ++|+..+ .|..+.+ .+.+.+.+.. -+++|++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g~id~l 81 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVADPA-SVERGFAEALAHLGRLDGV 81 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTCHH-HHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCCHH-HHHHHHHHHHHHcCCCCEE
Confidence 3678999997 9999999888888899 8999999988766543 3564322 2333321 1222222221 1369999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 82 vn~Ag~ 87 (245)
T 1uls_A 82 VHYAGI 87 (245)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999883
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.019 Score=48.45 Aligned_cols=92 Identities=12% Similarity=0.227 Sum_probs=63.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+. -+...+ .|..+.+ . ..+ +++|+||+++|.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~--~----~~~--~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFDLT--L----SDL--SDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGGCC--H----HHH--TTCSEEEECCCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccChh--h----hhh--cCCCEEEECCcC
Confidence 6899997 9999999999988998 9999999988877654 344332 2333332 2 222 369999999986
Q ss_pred h--------hhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 276 I--------DNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 276 ~--------~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
. .....+++.+... .++++.++..
T Consensus 72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 3 2234566666653 2688877653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.002 Score=54.33 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=69.6
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.....++++++||-+|+| .|..++.+++. +. +|++++.+++..+.+++ .|...+- ....+ ..+.. ...
T Consensus 70 ~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~-~~~~d--~~~~~--~~~ 141 (210)
T 3lbf_A 70 TELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVS-TRHGD--GWQGW--QAR 141 (210)
T ss_dssp HHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEE-EEESC--GGGCC--GGG
T ss_pred HHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceE-EEECC--cccCC--ccC
Confidence 455677899999999987 48888888887 66 99999999998888766 3433221 11111 10100 012
Q ss_pred CCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.||+|+....-......+.+.|+++ |++++.-.
T Consensus 142 ~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~~ 175 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPTALMTQLDEG-GILVLPVG 175 (210)
T ss_dssp CCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEEC
T ss_pred CCccEEEEccchhhhhHHHHHhcccC-cEEEEEEc
Confidence 47999998766545566889999997 98876533
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.019 Score=51.26 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCeEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEe--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GA--VGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~--~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |. +|.+.+..+...|+ +|+.++++++..+.+++ .+....+ |..+.+ ..+.+.+.+..
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW- 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc-
Confidence 5789999987 56 99998888888899 89888888654443333 3432233 332221 11222232322
Q ss_pred CCccEEEEcccChh-----------------------------hHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNID-----------------------------NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++|+++++.|... ....++..+.++ |+++.++..
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~ 171 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYY 171 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECG
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeeh
Confidence 37999999988421 233445556675 999988764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.015 Score=50.21 Aligned_cols=79 Identities=24% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcC---CceEe--cCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFG---VTDFV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG---~~~vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
+++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+. ++. --.++ |..+. ..+.+.+.... -+.
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDE-DGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCH-HHHHHHHHHHHHHHSS
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCH-HHHHHHHHHHHHHhCC
Confidence 4678999997 9999998888888899 8999999887665443 232 11222 33221 11222222221 136
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 83 id~li~~Ag~ 92 (251)
T 1zk4_A 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.023 Score=49.90 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=53.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-EecCCCCCc-cHHHHHHHHhC--CCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FVNTSEHDR-PIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi~~~~~~~-~~~~~~~~~~~--~~~d~ 268 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+ ++++... ++..+-.+. .+.+.+.+... +++|+
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 104 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI 104 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence 4689999987 9999999888888999 899999988876554 4466533 222222221 12222222211 37999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 105 lvnnAg~ 111 (266)
T 3grp_A 105 LVNNAGI 111 (266)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999985
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.016 Score=51.36 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c---CCc--eEe--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F---GVT--DFV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l---G~~--~vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ + +.. ..+ |..+.+ ..+.+.+.+..
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 109 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF- 109 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 5789999997 9999998888888899 89999999877654432 2 221 222 333321 11222333322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 110 g~iD~lvnnAG~ 121 (281)
T 4dry_A 110 ARLDLLVNNAGS 121 (281)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.013 Score=52.36 Aligned_cols=79 Identities=30% Similarity=0.396 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCC---c-eEe--cCCCCCccHHHHHHHHh-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGV---T-DFV--NTSEHDRPIQEVIAEMT- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~---~-~vi--~~~~~~~~~~~~~~~~~- 262 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +.|. . .++ |..+.+ .+.+.+.+..
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~ 102 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEAS-GQDDIINTTLA 102 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHH-HHHHHHHHHHH
Confidence 4688999987 9999998888888899 8999999987765432 2232 2 122 333221 1222222221
Q ss_pred -CCCccEEEEcccC
Q 016933 263 -NGGVDRSVECTGN 275 (380)
Q Consensus 263 -~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 103 ~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 103 KFGKIDILVNNAGA 116 (297)
T ss_dssp HHSCCCEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 1379999999873
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.01 Score=51.79 Aligned_cols=79 Identities=27% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC-ccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD-RPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~-~~~~~~~~~~~--~~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+..++++. .++..+-.+ ..+.+.+++.. -+++|+++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv 82 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV 82 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4688999997 9999998888888899 89999888777444455542 333222222 12223232221 13799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 83 ~~Ag~ 87 (256)
T 2d1y_A 83 NNAAI 87 (256)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99874
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.01 Score=51.47 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=53.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE-e--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF-V--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v-i--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+ ++++.... + |..+.+ ..+.+.+.+.. +++|
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id 82 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALT-GGID 82 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence 4689999987 9999999998888999 899999998876554 34554332 2 222211 11223333332 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ~lv~nAg~ 90 (247)
T 3rwb_A 83 ILVNNASI 90 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.031 Score=50.99 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=79.4
Q ss_pred CeEEEEcCCHHHHHHHHHHH-Hc-CCcEEEEEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 197 SSVAVFGLGAVGLAAAEGAR-IA-GASRIIGVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~-~~-g~~~vi~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-+|.|+|+|.+|...++.++ .. +++.+.+.++++++.+. .+++|+..+++ + +.+.+. ...+|+|+.++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~----~~~~l~---~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N----YKDMID---TENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C----HHHHHT---TSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C----HHHHhc---CCCCCEEEEeC
Confidence 46899999999998777776 43 66334556788877754 45578754432 1 323221 13799999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-cccc--cc-ccEEEeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINV--LN-ERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~--~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
....+.+.+.+++.. |+.+++..+.....-... .... .+ ++.+.-.+ ..+....+..+.+++.+|.+.
T Consensus 80 p~~~h~~~~~~al~~--G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~r~~p~~~~~~~~i~~g~iG 151 (346)
T 3cea_A 80 PTPFHPEMTIYAMNA--GLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGF--MRRYDDSYRYAKKIVDNGDIG 151 (346)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCC--GGGTCHHHHHHHHHHHTTTTC
T ss_pred ChHhHHHHHHHHHHC--CCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEec--ccccCHHHHHHHHHHHcCCCC
Confidence 987788888888887 455555433211000000 0001 12 33332221 122333577888888888653
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.022 Score=50.22 Aligned_cols=79 Identities=24% Similarity=0.260 Sum_probs=52.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+. +++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD 104 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKF-GRVD 104 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence 5688999997 9999998888888899 8999999988765543 454322 22 333221 11222222222 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 105 ~lVnnAg~ 112 (272)
T 4dyv_A 105 VLFNNAGT 112 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=49.96 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=69.2
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHH
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~ 261 (380)
...+.+++.+||=+|+| .|..++.+|+.+ +. +|++++.+++..+.+++ .|.. .-+.....+ ..+.+..+
T Consensus 50 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd--a~~~l~~~ 125 (221)
T 3dr5_A 50 ATTNGNGSTGAIAITPA-AGLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR--PLDVMSRL 125 (221)
T ss_dssp HHSCCTTCCEEEEESTT-HHHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC--HHHHGGGS
T ss_pred HhhCCCCCCCEEEEcCC-chHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC--HHHHHHHh
Confidence 33445556699988876 488899999987 45 99999999998877765 4543 111122222 33333333
Q ss_pred hCCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.||+||--... ...+..+.+.|+++ |.++.-..
T Consensus 126 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn~ 164 (221)
T 3dr5_A 126 ANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLADA 164 (221)
T ss_dssp CTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETTT
T ss_pred cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeCC
Confidence 24589999764433 23577889999997 98886443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.01 Score=52.58 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCc----eEecCCCCCccHHHHHHHHhCCCccE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVT----DFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~----~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
-.++++||+|+|++|.+++..+...|+++|++++++.++.+.+ ++++.. .+...+..+ +.+.+. .+|+
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~--l~~~l~-----~~Di 197 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG--IEDVIA-----AADG 197 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT--HHHHHH-----HSSE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH--HHHHHh-----cCCE
Confidence 3578999999999999999888889997899999999887644 333311 121111111 433332 3799
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
|+++++.
T Consensus 198 VInaTp~ 204 (283)
T 3jyo_A 198 VVNATPM 204 (283)
T ss_dssp EEECSST
T ss_pred EEECCCC
Confidence 9999864
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0099 Score=51.83 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=53.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+.. +
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY-S 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence 5789999987 9999998888888999 899999998876544 34565432 2333322 12333333333 3
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
+.|++++..|
T Consensus 84 ~iDiLVNNAG 93 (254)
T 4fn4_A 84 RIDVLCNNAG 93 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999999987
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.012 Score=51.38 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c-----CCc-eEe--cCCCCCccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F-----GVT-DFV--NTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l-----G~~-~vi--~~~~~~~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++++++.+.+.+ + +.. .++ |..+. ..+.+.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREP-GDIDRLFEKARDL 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCH-HHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCH-HHHHHHHHHHHHh
Confidence 4688999997 9999998888888899 89999998876654322 2 311 222 33322 1233333333222
Q ss_pred -CccEEEEcccC
Q 016933 265 -GVDRSVECTGN 275 (380)
Q Consensus 265 -~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 84 ~gid~lv~~Ag~ 95 (260)
T 2z1n_A 84 GGADILVYSTGG 95 (260)
T ss_dssp TCCSEEEECCCC
T ss_pred cCCCEEEECCCC
Confidence 49999999883
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0088 Score=53.53 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=73.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.....++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+.....+ +. .+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~----~~- 134 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG--WE----EF- 134 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC--GG----GC-
T ss_pred HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC--HH----Hc-
Confidence 45566789999999999874 8889999998887 999999999988887763 432111111111 11 12
Q ss_pred CCCccEEEEcccC---------------hhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 263 NGGVDRSVECTGN---------------IDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 263 ~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+.+|+|+....- ...+..+.+.|+|+ |++++.....
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~ 186 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTITI 186 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEEC
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEec
Confidence 4589999874321 25678899999997 9998876543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.024 Score=49.68 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=50.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc-----CCc-eEe--cCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF-----GVT-DFV--NTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l-----G~~-~vi--~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|.+.+..+...|+ +|++++++.++.+.+. ++ +.. ..+ |..+. ..+.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQ-QQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSH-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCH-HHHHHHHHHHHHH
Confidence 4688999997 9999999888888899 8999989887654332 22 211 122 33222 12223232221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 84 ~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 84 FGRLDILVNNAGV 96 (267)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1369999999884
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=51.95 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-EecCCCCCcc-HHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FVNTSEHDRP-IQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi~~~~~~~~-~~~~~~~~~~~~~d~v~ 270 (380)
+|+++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+.+ ++... ++..+-.+.+ +.+.+++. +++|+++
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv 91 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV--SGADVLI 91 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC--CCEEEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc--CCCCEEE
Confidence 5789999997 9999998888888899 89999999888766544 44322 2222222211 22222222 4799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
+++|.
T Consensus 92 ~nAg~ 96 (291)
T 3rd5_A 92 NNAGI 96 (291)
T ss_dssp ECCCC
T ss_pred ECCcC
Confidence 99884
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.008 Score=52.35 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+. +.|... ++ |..+.+ ..+.+.+.+. +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--A 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--S
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--C
Confidence 4688999997 9999999888888899 8999999887755443 234432 22 333321 1233333333 5
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 83 ~id~lv~nAg~ 93 (252)
T 3h7a_A 83 PLEVTIFNVGA 93 (252)
T ss_dssp CEEEEEECCCC
T ss_pred CceEEEECCCc
Confidence 79999999884
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=52.31 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+.++|++.+ + +.+.++ ..|+|+-++.
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~----~----l~ell~-----~aDvV~l~~p 205 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV----D----LETLLK-----ESDVVTIHVP 205 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC----C----HHHHHH-----HCSEEEECCC
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc----C----HHHHHh-----hCCEEEEecC
Confidence 57899999999999999999999999 99999988876 56677887421 1 333232 3799998876
Q ss_pred Chh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
..+ .+ ...+..++++ ..++.++.
T Consensus 206 ~~~~t~~li~~~~l~~mk~g-a~lin~ar 233 (307)
T 1wwk_A 206 LVESTYHLINEERLKLMKKT-AILINTSR 233 (307)
T ss_dssp CSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred CChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence 422 22 3567888886 88887765
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0099 Score=51.48 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-EecCCCCCccHHHHHHHHhCCCccEE
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
..+++++||+|+ |.+|...+......|+ +|+.++++.++.+.+.+ +.... ++..+-.+.+..+.+.+.. +++|++
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~l 88 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT-SNLDIL 88 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC-SCCSEE
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc-CCCCEE
Confidence 457889999997 9999998888888899 89999999888766543 44322 2222222211222222211 379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 89 i~~Ag~ 94 (249)
T 3f9i_A 89 VCNAGI 94 (249)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999884
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0045 Score=52.91 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=69.5
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC--
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~-- 263 (380)
....++++||-+|+| .|..++.+++.++ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+..+..
T Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d--~~~~~~~~~~~~ 141 (229)
T 2avd_A 65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP--ALETLDELLAAG 141 (229)
T ss_dssp HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHHHHHTT
T ss_pred HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcC--HHHHHHHHHhcC
Confidence 344677899999987 6888999998763 3399999999998887765 3442111111122 3344444332
Q ss_pred --CCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 --GGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 --~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.+|+|+-.... ...+..+.+.|+++ |.++....
T Consensus 142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 180 (229)
T 2avd_A 142 EAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV 180 (229)
T ss_dssp CTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEECC
Confidence 479998754433 24688899999997 99887653
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=51.36 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cC--CceE-ecCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FG--VTDF-VNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG--~~~v-i~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ +. +..+ .|..+.+ .+.+.+.+.. -+++|
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~-~v~~~~~~~~~~~g~iD 88 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRA-SVDAAMQKAIDALGGFD 88 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHH-HHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHH-HHHHHHHHHHHHcCCCC
Confidence 4689999997 9999998888888899 89999999887665543 32 2211 2333221 1222222221 13799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 89 ~lv~~Ag~ 96 (263)
T 3ak4_A 89 LLCANAGV 96 (263)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999873
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=50.69 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhC--CCccEEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTN--GGVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~--~~~d~v~d 271 (380)
++++||+|+ |.+|.+.+..+...|+ +|+.+++++++ ..+++|+..+ .|..+. ...+.+.+... +++|++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~~--~~~~~~~~~~~~~g~id~lv~ 76 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEKD--DPKGLVKRALEALGGLHVLVH 76 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTTS--CHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCchH--HHHHHHHHHHHHcCCCCEEEE
Confidence 578999997 9999999988888999 89999888776 3444564322 344332 23333333221 37999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 77 ~Ag~ 80 (239)
T 2ekp_A 77 AAAV 80 (239)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.016 Score=51.55 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-HHH----HHhcCCce-Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-FEE----AKKFGVTD-FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~----~~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++ .+. +++.|... ++ |..+.+ ..+.+.+.+..
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL- 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 5789999987 9999998888888899 88888777643 222 23345433 22 332221 11222232322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 124 g~iD~lvnnAg~ 135 (291)
T 3ijr_A 124 GSLNILVNNVAQ 135 (291)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998773
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=51.38 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.++.--..+..+-.+.+-.+.+.+.. +++|+++++.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~lv~~A 82 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNVA 82 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHh-CCCCEEEECC
Confidence 4688999997 9999998888888899 89999998877655443321122222222212222232222 4799999998
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 83 g~ 84 (246)
T 2ag5_A 83 GF 84 (246)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.026 Score=49.68 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=62.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.++ ++.++.+.+ ++.|... .+..+-.+ ..+.+.+.+... +
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG 108 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5789999997 9999998888888999 777774 444444332 3345433 22222222 112222332211 3
Q ss_pred CccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 265 GVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 265 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++|+++++.|.. .....+...++++ |+++.++..
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~ 167 (271)
T 3v2g_A 109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN 167 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence 799999998741 1233455566675 999988653
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.012 Score=51.10 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c-C--Cce-EecCCCCCc-cHHHHHHHHh-
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F-G--VTD-FVNTSEHDR-PIQEVIAEMT- 262 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l-G--~~~-vi~~~~~~~-~~~~~~~~~~- 262 (380)
-.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ . + +.. ..|....+. .+.+.+.+..
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 35789999997 9999998888888899 89999999887655432 1 1 211 233321221 1222222221
Q ss_pred -CCCccEEEEcccC
Q 016933 263 -NGGVDRSVECTGN 275 (380)
Q Consensus 263 -~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 89 ~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 89 NYPRLDGVLHNAGL 102 (252)
T ss_dssp HCSCCSEEEECCCC
T ss_pred hCCCCCEEEECCcc
Confidence 2379999999884
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=51.72 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +.|... . .|..+.+ ..+.+.+.+...+
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 98 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 98 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999997 9999999988888999 8999999987665432 234322 2 2333221 1122333333325
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 99 ~id~lv~nAg~ 109 (273)
T 1ae1_A 99 KLNILVNNAGV 109 (273)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECCCC
Confidence 79999999874
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.02 Score=51.17 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCceEecCCCCCc-cHH---HHHHHHhC
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTDFVNTSEHDR-PIQ---EVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~vi~~~~~~~-~~~---~~~~~~~~ 263 (380)
.++++||+|+ | ++|.+.+......|+ +|+.++++++..+.++ +.+....+..+-.+. .+. +.+.+..
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW- 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 5789999997 5 999988888888899 8999988876544443 334333332222221 122 2232222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 107 g~iD~lVnnAG~ 118 (296)
T 3k31_A 107 GSLDFVVHAVAF 118 (296)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0054 Score=53.76 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v 269 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++ .+.+++.++..+ .|..+.+ .+.+.+.+.. -+++|++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~~~g~iD~l 103 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSCET-GIMAFIDLLKTQTSSLRAV 103 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTSHH-HHHHHHHHHHHHCSCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCCHH-HHHHHHHHHHHhcCCCCEE
Confidence 4678999987 9999998888888899 78888887765 445555665332 2333321 1222232221 2379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 104 v~nAg~ 109 (260)
T 3gem_A 104 VHNASE 109 (260)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999884
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0054 Score=53.41 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-------------------hHHHHHH----hcCCce-EecCC-CC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-------------------KRFEEAK----KFGVTD-FVNTS-EH 250 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-------------------~~~~~~~----~lG~~~-vi~~~-~~ 250 (380)
+.+|+|+|+|++|..+++.+...|+++++.++.+. .|.+.++ ++.... +..+. ..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 110 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL 110 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 47899999999999999999999998999998886 5554443 333221 21111 11
Q ss_pred CccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhc
Q 016933 251 DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD 288 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 288 (380)
+ .+.+.++.. ++|+|++++++.+....+.+....
T Consensus 111 ~---~~~~~~~~~-~~DvVi~~~d~~~~~~~l~~~~~~ 144 (249)
T 1jw9_B 111 D---DAELAALIA-EHDLVLDCTDNVAVRNQLNAGCFA 144 (249)
T ss_dssp C---HHHHHHHHH-TSSEEEECCSSHHHHHHHHHHHHH
T ss_pred C---HhHHHHHHh-CCCEEEEeCCCHHHHHHHHHHHHH
Confidence 1 112223222 699999999886654444444444
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0077 Score=57.50 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|+|+|.|.+|...++.++.+|+ +|++++++..+.......|... . + +.+ +. ...|+|+-++
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~-~---~----l~e----ll-~~aDiVi~~~ 340 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV-V---T----MEY----AA-DKADIFVTAT 340 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE-C---C----HHH----HT-TTCSEEEECS
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe-C---C----HHH----HH-hcCCEEEECC
Confidence 578999999999999999999999999 9999999988754444556532 1 1 322 22 2589999998
Q ss_pred cChhhH-HHHHHHhhcCCcEEEEEcCCC
Q 016933 274 GNIDNM-ISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 274 g~~~~~-~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+....+ ...++.++++ ..++.++...
T Consensus 341 ~t~~lI~~~~l~~MK~g-AilINvgrg~ 367 (494)
T 3d64_A 341 GNYHVINHDHMKAMRHN-AIVCNIGHFD 367 (494)
T ss_dssp SSSCSBCHHHHHHCCTT-EEEEECSSSS
T ss_pred CcccccCHHHHhhCCCC-cEEEEcCCCc
Confidence 765555 4778899996 8888887653
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.025 Score=47.86 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=62.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHH-HcCCcEEEEEcCChh-HHHHHHhcCCc-eEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGAR-IAGASRIIGVDRSSK-RFEEAKKFGVT-DFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~-~~g~~~vi~~~~~~~-~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
++|||+|+ |.+|...+..+. ..|+ +|++++++++ +.+.+.+.+.. .++..+-.+ .+.+.+... ++|++|++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d---~~~~~~~~~-~~d~vv~~ 80 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN---PGXLEQAVT-NAEVVFVG 80 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC---HHHHHHHHT-TCSEEEES
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC---HHHHHHHHc-CCCEEEEc
Confidence 46999997 999999888777 8999 8999999988 76655322221 222222222 123333333 68999999
Q ss_pred ccChhh-HHHHHHHhhcC-CcEEEEEcCC
Q 016933 273 TGNIDN-MISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 273 ~g~~~~-~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.|.... ...+++.+... .++++.++..
T Consensus 81 ag~~n~~~~~~~~~~~~~~~~~iv~iSs~ 109 (221)
T 3r6d_A 81 AMESGSDMASIVKALSRXNIRRVIGVSMA 109 (221)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCCChhHHHHHHHHHhcCCCeEEEEeec
Confidence 986211 34555555543 2578877654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.011 Score=51.60 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=72.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc----eEecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT----DFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~----~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.....++++.+||-+|+| .|..+..+++..++ +|++++.+++..+.+++.... .++..+-.+ + ...
T Consensus 47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~-----~~~ 117 (266)
T 3ujc_A 47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDILT--K-----EFP 117 (266)
T ss_dssp HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT--C-----CCC
T ss_pred HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc--C-----CCC
Confidence 3455678899999999987 68888899987787 999999999999999886532 122111111 0 011
Q ss_pred CCCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.+|+|+....- ...+..+.+.|+|+ |.+++...
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 160 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY 160 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence 2479999875321 23467888999997 99987754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=55.59 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred ceeeEEE-EeccceEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc
Q 016933 149 TFSEYTV-VHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 149 ~~a~~~~-v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
.|.+|.. .+....+.++..+++..... +.. ......+. ..++++++||-+|+|. |..+..+++ .+..+|++++
T Consensus 17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~-~~~~~~l~--~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD 90 (205)
T 3grz_A 17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTT-QLAMLGIE--RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD 90 (205)
T ss_dssp TTCCCCCSSTTCEEEEESCC-----CCH-HHH-HHHHHHHH--HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred cccccccCCCCceeEEecCCcccCCCCC-ccH-HHHHHHHH--HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence 4555555 55566777777665444321 100 00111111 1256889999999875 677777776 4555999999
Q ss_pred CChhHHHHHHhc----CCce--EecCCCCCccHHHHHHHHhCCCccEEEEcccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 228 RSSKRFEEAKKF----GVTD--FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 228 ~~~~~~~~~~~l----G~~~--vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+++..+.+++. +... ++..+-.+ ...+.+|+|+...... ..+..+.+.|+++ |++++...
T Consensus 91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 160 (205)
T 3grz_A 91 ISDESMTAAEENAALNGIYDIALQKTSLLA---------DVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSGI 160 (205)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEESSTTT---------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEeccccc---------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEec
Confidence 999988877663 4332 22211111 1234799998754331 2345566678886 88887543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.023 Score=48.80 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c-CCceEecCCCCCccHHHHHHHHhC--CCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F-GVTDFVNTSEHDRPIQEVIAEMTN--GGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l-G~~~vi~~~~~~~~~~~~~~~~~~--~~~d~v 269 (380)
+++++||+|+ |.+|...++.+...|+ +|++++++.++.+.+.+ . +. .++..+-.+. +.+.++.. +++|++
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~D~~~~---~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGI-EPVCVDLGDW---DATEKALGGIGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTC-EEEECCTTCH---HHHHHHHTTCCCCSEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCC-CcEEecCCCH---HHHHHHHHHcCCCCEE
Confidence 4678999997 9999999988888999 89999998877655443 2 33 2332222221 22333222 368999
Q ss_pred EEccc
Q 016933 270 VECTG 274 (380)
Q Consensus 270 ~d~~g 274 (380)
|++.|
T Consensus 81 i~~Ag 85 (244)
T 1cyd_A 81 VNNAA 85 (244)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 99988
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.025 Score=49.16 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH--HHHHHhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR--FEEAKKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~--~~~~~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~ 266 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++ .+.+++.|... ++ |..+. ..+.+.+.+.. -+++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~g~i 80 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSDV-AQIEALFALAEREFGGV 80 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSH-HHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCH-HHHHHHHHHHHHHcCCC
Confidence 3678999997 9999998888888899 89888887651 22233334432 22 22221 11222222221 1379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++|++.|.
T Consensus 81 d~lv~~Ag~ 89 (255)
T 2q2v_A 81 DILVNNAGI 89 (255)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.014 Score=50.69 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c--C-C-ceEe--cCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F--G-V-TDFV--NTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l--G-~-~~vi--~~~~~~--~~~~~~~~~~ 261 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ . + . -.++ |..+.+ ..+.+.+.+.
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 4688999997 9999998888888899 89999999887655433 1 2 1 1122 333321 1122222222
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 85 ~-g~iD~lvnnAg~ 97 (250)
T 3nyw_A 85 Y-GAVDILVNAAAM 97 (250)
T ss_dssp H-CCEEEEEECCCC
T ss_pred c-CCCCEEEECCCc
Confidence 2 379999999985
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.014 Score=51.02 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +.|... + .|..+.+ ..+.+.+.+...+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 86 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 86 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999997 9999998888888899 8999999887755432 234322 2 2333221 1122223333325
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 87 ~id~lv~~Ag~ 97 (260)
T 2ae2_A 87 KLNILVNNAGI 97 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999883
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0032 Score=54.79 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC-CC
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN-GG 265 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~-~~ 265 (380)
...++.+||-+|+|. |..++.+|+.++ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+..... +.
T Consensus 60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d--~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP--ALQSLESLGECPA 136 (248)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHTCCSCCC
T ss_pred hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHhcCCCCC
Confidence 355778999999864 888889998874 3499999999998888766 3543211111222 4343444332 27
Q ss_pred ccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
||+||-.... ...+..+.+.|+++ |.++....
T Consensus 137 fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~ 171 (248)
T 3tfw_A 137 FDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV 171 (248)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence 9999833222 24678889999997 98887654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.018 Score=53.97 Aligned_cols=96 Identities=13% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+..|+|+|.|-+|...++.++..|. .|++++.++++.+.+++.|...++ -+..+. +.+++..-..+|+++-+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~-GDat~~---~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFY-GDATRM---DLLESAGAAKAEVLINAID 77 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEE-SCTTCH---HHHHHTTTTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEE-cCCCCH---HHHHhcCCCccCEEEECCC
Confidence 34679999999999999999999999 999999999999999999876443 232221 2344432337999999998
Q ss_pred ChhhH---HHHHHHhhcCCcEEEEE
Q 016933 275 NIDNM---ISAFECVHDGWGVAVLV 296 (380)
Q Consensus 275 ~~~~~---~~~~~~l~~~~G~~v~~ 296 (380)
....- ....+.+.+. .+++.-
T Consensus 78 ~~~~n~~i~~~ar~~~p~-~~Iiar 101 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPH-LQIIAR 101 (413)
T ss_dssp SHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred ChHHHHHHHHHHHHhCCC-CeEEEE
Confidence 85433 3444455564 555544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0062 Score=52.35 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=68.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC----
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN---- 263 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~---- 263 (380)
..++++||-+|+| .|..++.+++.++ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+..+..
T Consensus 70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d--~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP--ALATLEQLTQGKPL 146 (232)
T ss_dssp HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC--HHHHHHHHHTSSSC
T ss_pred hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHHHHhcCCC
Confidence 4567899999987 7888999998773 2299999999998887765 3543211111222 4444444432
Q ss_pred CCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.||+||-.... ...+..+.+.|+++ |.+++-..
T Consensus 147 ~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 183 (232)
T 3cbg_A 147 PEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDNV 183 (232)
T ss_dssp CCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEECT
T ss_pred CCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 579999843322 24578889999997 99887644
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.02 Score=50.30 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=63.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHH----HHhcCCce-EecCCCCC-ccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEE----AKKFGVTD-FVNTSEHD-RPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~----~~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ +++|.+.+......|+ +|+.+++ +.++.+. +++.|... .+..+-.+ ..+.+.+.+... +
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5689999987 9999998888888999 7777544 4444333 33345433 22222222 122222322211 3
Q ss_pred CccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 265 GVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 265 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+|+++++.|.. .....++..+.++ |+++.++...
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~ 155 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT 155 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence 799999998841 1234556667776 9999987754
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0054 Score=53.98 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.++++.++.+.+..-.... ..|..+.+ .+.+.+.+... +++|+++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~g~iD~lv 92 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTDKY-TFDTAITRAEKIYGPADAIV 92 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTCHH-HHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCCHH-HHHHHHHHHHHHCCCCCEEE
Confidence 4688999997 9999998888888899 8999989887765443222211 12332221 12222222211 3799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 93 nnAg~ 97 (266)
T 3p19_A 93 NNAGM 97 (266)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99884
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.013 Score=51.44 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+++++|+|+|++|.+++..+...|. +|++++|+.+|.+.+.++|+. +..+++ + ..+|+||++++.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~----l---------~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP----K---------SAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC----S---------SCCSEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH----h---------ccCCEEEEcccC
Confidence 8899999999999999999999995 999999999887665577753 333322 1 158999999764
Q ss_pred h-----hh-HHHHHHHhhcCCcEEEEE
Q 016933 276 I-----DN-MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 276 ~-----~~-~~~~~~~l~~~~G~~v~~ 296 (380)
. .. ...+...++++ ..++.+
T Consensus 183 Gm~~~~~l~~~~l~~~l~~~-~~v~D~ 208 (269)
T 3phh_A 183 SLHNELPLNKEVLKGYFKEG-KLAYDL 208 (269)
T ss_dssp CCCCSCSSCHHHHHHHHHHC-SEEEES
T ss_pred CCCCCCCCChHHHHhhCCCC-CEEEEe
Confidence 2 11 11222356775 555544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.014 Score=49.66 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=69.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcC-----CcEEEEEcCChhHHHHHHhc----C-----Cce--EecCCCCCccHH
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAG-----ASRIIGVDRSSKRFEEAKKF----G-----VTD--FVNTSEHDRPIQ 255 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g-----~~~vi~~~~~~~~~~~~~~l----G-----~~~--vi~~~~~~~~~~ 255 (380)
.++++++||-+|+|. |..++.+++..+ ..+|++++.+++..+.+++. + .+. ++..+..+ .+.
T Consensus 77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ-VNE 154 (227)
T ss_dssp TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG-CCH
T ss_pred hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh-ccc
Confidence 578899999999876 888999999876 12899999999988877653 3 111 22111111 110
Q ss_pred HHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 256 EVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 256 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.. ...+.||+|+........+..+.+.|+++ |++++.-.
T Consensus 155 ~~~--~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~ 194 (227)
T 2pbf_A 155 EEK--KELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE 194 (227)
T ss_dssp HHH--HHHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred ccC--ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence 000 11247999988877667788999999997 99876643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=52.39 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=69.8
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.....++++.+||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+.....+ + ..+
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d--~----~~~- 126 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG--W----EQF- 126 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC--G----GGC-
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECC--h----hhC-
Confidence 34556788999999999865 7788889987898 999999999988888763 321111111111 1 111
Q ss_pred CCCccEEEEc-----cc---ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVEC-----TG---NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
++.+|+|+.. .+ ....+..+.+.|+|+ |++++...
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 169 (287)
T 1kpg_A 127 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI 169 (287)
T ss_dssp CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence 1579999865 22 124678889999997 99887654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.014 Score=51.01 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=53.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ +.+|.+.+..+...|+ +|+.+++++++.+.+. +++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id 85 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKF-GKVD 85 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhc-CCCC
Confidence 4689999997 9999998888888899 8999999998876654 355432 22 332221 11222232322 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 86 ~li~~Ag~ 93 (261)
T 3n74_A 86 ILVNNAGI 93 (261)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999874
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=51.74 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.|... .+ |..+.+ ..+.+.+.+.. +
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL-G 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence 4689999987 9999998888888899 8999999887655443 234322 22 333221 11222232322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.047 Score=46.38 Aligned_cols=115 Identities=17% Similarity=0.047 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS-KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.|.+|||+|+|.+|...+..+...|+ .|++++... +.++.+.+.|--..+...-.+.+ -.++|+||-++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~d---------L~~adLVIaAT 99 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKRKKVGEED---------LLNVFFIVVAT 99 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEECSCCCGGG---------SSSCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEECCCCHhH---------hCCCCEEEECC
Confidence 46889999999999999999999999 788776543 23333333332222221111111 12699999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEee
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 321 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~ 321 (380)
+.+ .++..+...+.. |..|.+........+.++..--...++|--+
T Consensus 100 ~d~-~~N~~I~~~ak~-gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIS 145 (223)
T 3dfz_A 100 NDQ-AVNKFVKQHIKN-DQLVNMASSFSDGNIQIPAQFSRGRLSLAIS 145 (223)
T ss_dssp CCT-HHHHHHHHHSCT-TCEEEC-----CCSEECCEEEEETTEEEEEE
T ss_pred CCH-HHHHHHHHHHhC-CCEEEEeCCcccCeEEEeeEEEeCCEEEEEE
Confidence 984 555555555665 8887776654444555444322244555443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.02 Score=51.65 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++. .++++|+... + +.+.++ ..|+|+.++
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~----~----l~ell~-----~aDvVvl~~ 204 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKAV----S----LEELLK-----NSDVISLHV 204 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEEC----C----HHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCceec----C----HHHHHh-----hCCEEEEec
Confidence 467899999999999999999999999 999999887764 4667786421 1 333332 379999888
Q ss_pred cChh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 274 GNID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.... .+ ...+..++++ ..++.++.
T Consensus 205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar 233 (313)
T 2ekl_A 205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR 233 (313)
T ss_dssp CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence 6422 22 4667888886 77777765
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.021 Score=50.18 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCC-ccHHHHHHHHh--CCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHD-RPIQEVIAEMT--NGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~-~~~~~~~~~~~--~~~~d~v 269 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ +..-..+..+-.+ ..+.+.+.+.. -+++|++
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 86 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV 86 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4689999997 9999999888888999 89999999887665543 3322222222222 11222222221 1379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
|++.|.
T Consensus 87 v~nAg~ 92 (270)
T 1yde_A 87 VNNAGH 92 (270)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.029 Score=48.47 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++ ++++.+.+ ++.+... .+ |..+.+ .+.+.+++.. -
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAE-DVTNMVKQTVDVF 80 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 3678999997 9999999888888999 8888877 76665433 2234332 22 333221 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 2uvd_A 81 GQVDILVNNAGV 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999884
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0057 Score=54.75 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCc--eEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
++++++|+|+|.+|.+++..+...|+.+|++++++.+|.+ ++++++.. .+++ + +.+.+.. ..+|+|++
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~-------~-~~~~~~~-~~aDivIn 210 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS-------L-AEAETRL-AEYDIIIN 210 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC-------H-HHHHHTG-GGCSEEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee-------H-HHHHhhh-ccCCEEEE
Confidence 5789999999999999999988899878999999988864 44556652 2221 2 1233322 26899999
Q ss_pred cccCh
Q 016933 272 CTGNI 276 (380)
Q Consensus 272 ~~g~~ 276 (380)
+++..
T Consensus 211 ~t~~~ 215 (297)
T 2egg_A 211 TTSVG 215 (297)
T ss_dssp CSCTT
T ss_pred CCCCC
Confidence 99863
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.035 Score=49.24 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=59.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+ ..+.+. ..|+||-|+..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~----~~~~~~-----~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA---AT----PCEVVE-----SCPVTFAMLADP 68 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC---SS----HHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec---CC----HHHHHh-----cCCEEEEEcCCH
Confidence 478999999999998888888898 89999999999988888776321 11 333332 257888887754
Q ss_pred hhHHHHH-------HHhhcCCcEEEEEc
Q 016933 277 DNMISAF-------ECVHDGWGVAVLVG 297 (380)
Q Consensus 277 ~~~~~~~-------~~l~~~~G~~v~~g 297 (380)
..+...+ ..++++ ..++..+
T Consensus 69 ~~~~~v~~~~~~l~~~l~~~-~~vi~~s 95 (287)
T 3pef_A 69 AAAEEVCFGKHGVLEGIGEG-RGYVDMS 95 (287)
T ss_dssp HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence 4444333 445553 4444443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=50.62 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=52.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-E--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-F--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+ ++++... . .|..+. ..+.+.+++... +++|
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~g~iD 81 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIE-EDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCH-HHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCCH-HHHHHHHHHHHHHcCCCC
Confidence 4688999997 9999999988888999 899999988776554 3344322 2 233322 123333332221 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 ~lv~nAg~ 89 (254)
T 1hdc_A 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=52.82 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=61.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH--cCCcEEEEEcCChhH--HHHHHhcCCceEecCCCCCccHHHHHHHHhC-CCccEEEE
Q 016933 197 SSVAVFGLGAVGLAAAEGARI--AGASRIIGVDRSSKR--FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN-GGVDRSVE 271 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~--~g~~~vi~~~~~~~~--~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~-~~~d~v~d 271 (380)
-+|.|+|+|.+|...+..+.. -+++.+.+.++++++ .++++++|..... + ..+.+.+.+. .++|+||+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~---~----~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY---A----GVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES---S----HHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc---C----CHHHHHhccCCCCCcEEEE
Confidence 468999999999988887743 366445556666565 5677788874221 1 2233333222 36999999
Q ss_pred cccChhhHHHHHHHhhc--CCcEEEE
Q 016933 272 CTGNIDNMISAFECVHD--GWGVAVL 295 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~--~~G~~v~ 295 (380)
+++...+...+..++.. + .+++.
T Consensus 78 atp~~~h~~~a~~al~a~~G-k~Vi~ 102 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQAKPG-IRLID 102 (312)
T ss_dssp CSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred CCChHHHHHHHHHHHHhCCC-CEEEE
Confidence 99986777888888887 6 66655
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0093 Score=56.71 Aligned_cols=93 Identities=24% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.-.|++|+|+|.|.+|...++.++.+|+ +|++++++..+.......|+. +. + +.+ +. ...|+|+-+
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~~---~----l~e----ll-~~aDiVi~~ 319 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV---T----LDE----IV-DKGDFFITC 319 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC---C----HHH----HT-TTCSEEEEC
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-ec---C----HHH----HH-hcCCEEEEC
Confidence 3578999999999999999999999999 999999998876445566663 21 1 322 22 258999998
Q ss_pred ccChhhH-HHHHHHhhcCCcEEEEEcCCC
Q 016933 273 TGNIDNM-ISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 273 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+....+ ...++.++++ ..++.+|...
T Consensus 320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg~ 347 (479)
T 1v8b_A 320 TGNVDVIKLEHLLKMKNN-AVVGNIGHFD 347 (479)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred CChhhhcCHHHHhhcCCC-cEEEEeCCCC
Confidence 7765544 3677888896 8888887653
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.014 Score=52.18 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=52.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.|+++||+|+ |++|.+.+..+...|+ +|+.++++.++.+.+.+ .|... + .|..+.+ .+.+.+.+.. -+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLD-EMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHHhCC
Confidence 5789999997 9999998888888999 89999999887655432 34322 2 2333321 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|+++|.
T Consensus 108 ~id~lvnnAg~ 118 (301)
T 3tjr_A 108 GVDVVFSNAGI 118 (301)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.024 Score=49.16 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe-cCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV-NTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
-+++++||+|+ |.+|.+.+..+...|+ +|+.++++++.. ++++...++ |. .....+.+.... ++|++|+
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~---~~~~~~~~~~D~---~~~~~~~~~~~~--~iD~lv~ 87 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDL---RKDLDLLFEKVK--EVDILVL 87 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCT---TTCHHHHHHHSC--CCSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH---HhhCCeEEEeeH---HHHHHHHHHHhc--CCCEEEE
Confidence 45789999997 9999999888888899 899998887443 444532222 33 112433333332 6999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 88 ~Ag~ 91 (249)
T 1o5i_A 88 NAGG 91 (249)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9873
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.011 Score=51.50 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=52.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
+++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ .+... .+ |..+.+ ..+.+.+.+.. +
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g 82 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF-G 82 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence 4688999987 9999998888888999 89999999887765543 23222 22 333221 11222232322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 83 ~id~lv~nAg~ 93 (257)
T 3imf_A 83 RIDILINNAAG 93 (257)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999883
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0044 Score=56.05 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=70.6
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
.....++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++. |...+ .....+ ..+... .
T Consensus 68 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~~d--~~~~~~--~ 141 (317)
T 1dl5_A 68 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVCGD--GYYGVP--E 141 (317)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEESC--GGGCCG--G
T ss_pred HHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEECC--hhhccc--c
Confidence 4556788999999999876 8888888887642 3799999999988887763 54332 111111 111000 1
Q ss_pred CCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.+|+|+...........+.+.|+|+ |++++.-.
T Consensus 142 ~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~~ 176 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPIN 176 (317)
T ss_dssp GCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEBC
T ss_pred CCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEEC
Confidence 247999998766545557888999997 99887643
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=51.42 Aligned_cols=79 Identities=23% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-E--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +++... . .|..+.+ ..+.+.+.+.. +++|
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD 103 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKW-GRVD 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4689999997 9999998888888999 8999999988765543 355432 2 2332221 11222222222 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 104 ~lv~nAg~ 111 (277)
T 4dqx_A 104 VLVNNAGF 111 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.016 Score=50.27 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHHH-HHHhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRFE-EAKKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~-~~~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~ 266 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++ ++.+ .+++.|... .+ |..+.+ .+.+.+.+.. -+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~~~g~i 83 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPG-DVEAFGKQVISTFGRC 83 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHH-HHHHHHHHHHHHcCCC
Confidence 4688999997 9999998888888899 898888887 5544 345555432 22 333221 1222222221 1379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 84 d~lv~nAg~ 92 (249)
T 2ew8_A 84 DILVNNAGI 92 (249)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.017 Score=50.62 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c-----CCce-Ee--cCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F-----GVTD-FV--NTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l-----G~~~-vi--~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.+ + +... .+ |..+.+ .+.+.+.+..
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEA-QVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHH-HHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHH-HHHHHHHHHHHH
Confidence 4689999997 9999998888888899 89999998877654422 2 4322 22 333221 2323332221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 90 ~g~id~lv~nAg~ 102 (267)
T 1iy8_A 90 FGRIDGFFNNAGI 102 (267)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1379999999873
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.025 Score=49.56 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-E--ecCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-F--VNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +++... . .|..+.+ .+.+.+.+.. -+.+|
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~g~iD 82 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPK-AVEAVFAEALEEFGRLH 82 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHH-HHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHH-HHHHHHHHHHHHcCCCc
Confidence 4688999997 9999998888888899 8999999988766554 343221 2 2333221 1222222221 13699
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ~lvnnAg~ 90 (263)
T 2a4k_A 83 GVAHFAGV 90 (263)
T ss_dssp EEEEGGGG
T ss_pred EEEECCCC
Confidence 99999874
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=50.54 Aligned_cols=79 Identities=32% Similarity=0.500 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.+ + +... ++ |..+.+ .+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPE-GVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHH-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 4688999997 9999999888888899 89999998877654322 2 4322 22 333221 22222222211
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.024 Score=49.45 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=52.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|.+.+......|+ +|+.++++.++.+.+ ++++... .+ |..+.+ .+.+.+.+.. -+++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~g~id 84 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTRQD-SIDAAIAATVEHAGGLD 84 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHH-HHHHHHHHHHHHSSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHH-HHHHHHHHHHHHcCCCC
Confidence 4689999997 9999998888888899 899999988876554 3454432 22 333221 1222232221 23799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 85 ~lv~~Ag~ 92 (259)
T 4e6p_A 85 ILVNNAAL 92 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.012 Score=53.19 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=52.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC--c-eEe--cCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV--T-DFV--NTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~--~-~vi--~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |++|...+..+...|+ +|+.++++.++.+.+.+ .+. . .++ |..+. ..+.+.+....
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASR-EGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCH-HHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCH-HHHHHHHHHHHHh
Confidence 4689999997 9999998888888899 89999999887655432 332 1 122 33322 12333333321
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 85 ~g~id~lv~nAg~ 97 (319)
T 3ioy_A 85 FGPVSILCNNAGV 97 (319)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 1379999999983
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.041 Score=49.24 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=41.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~ 53 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG 53 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence 579999999999998888888898 9999999999999998888754
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.017 Score=50.49 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
+++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+. +.|... ++ |..+.+ ..+.+.+.+.. +
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g 105 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH-G 105 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc-C
Confidence 5689999997 9999998888888899 8999999988765543 234322 22 332221 11222222222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|++++++|.
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999885
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=50.21 Aligned_cols=80 Identities=28% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCce-EecCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTD-FVNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~-vi~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.|+++||+|+ |++|.+.+......|+ +|+.++++++..+.+++ .+... .+..+-.+.+-.+.+.+.. .+++|
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD 108 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD 108 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence 4789999987 9999998888888899 88888877654444443 33322 2222222211222222211 14799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 109 ~lv~nAg~ 116 (273)
T 3uf0_A 109 VLVNNAGI 116 (273)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.018 Score=50.35 Aligned_cols=79 Identities=25% Similarity=0.306 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce--Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD--FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~--vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.+... .+ |..+.+ ..+.+.+.+..
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF- 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence 4689999987 9999998888888899 8999999988765442 233212 22 322221 11222222222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 87 g~id~lvnnAg~ 98 (262)
T 3pk0_A 87 GGIDVVCANAGV 98 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999884
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.02 Score=49.59 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+.+ .|... .+ |..+.+ .+.+.+.+.. -+
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQ-GVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHH-HHHHHHHHHHHHcC
Confidence 4688999997 9999998888888899 89999998877654432 34322 22 333221 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 84 ~id~lv~nAg~ 94 (247)
T 2jah_A 84 GLDILVNNAGI 94 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.018 Score=49.70 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=52.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCC--ceEe--cCCCCCc-cHH---HHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGV--TDFV--NTSEHDR-PIQ---EVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~--~~vi--~~~~~~~-~~~---~~~~~~ 261 (380)
+++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.+. ..++ +.+..+. .+. +.+.+.
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 5789999997 9999998888888899 8999999988765543 2332 1222 3322221 122 223222
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 92 ~-g~id~lv~nAg~ 104 (247)
T 3i1j_A 92 F-GRLDGLLHNASI 104 (247)
T ss_dssp H-SCCSEEEECCCC
T ss_pred C-CCCCEEEECCcc
Confidence 2 379999999874
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.019 Score=50.47 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-----hcCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-----KFGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|++++++.++.+.+. +.|... .+ |..+.+ .+.+.+.+.. -
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE-EVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 4688999997 9999998888888899 8999999887654432 225432 22 333221 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.016 Score=49.52 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=51.0
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCC-ccHHHHHHHHh--CCCccEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHD-RPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~-~~~~~~~~~~~--~~~~d~v~ 270 (380)
++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+ ++--.++..+-.+ ..+.+.+.... -+++|+++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV 83 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 568999987 9999998888888899 89999998887665443 4321222222222 12222222221 13799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 84 ~~Ag~ 88 (234)
T 2ehd_A 84 NNAGV 88 (234)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99873
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.015 Score=51.40 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc---CCceEecCCCCCc-cHHHHHHHHh--CCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF---GVTDFVNTSEHDR-PIQEVIAEMT--NGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l---G~~~vi~~~~~~~-~~~~~~~~~~--~~~~ 266 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. ++ |--.++..+-.+. .+.+.+.+.. -+++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 106 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL 106 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4688999997 9999999888888999 8999999887765432 22 3111221121221 1222222221 2379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++|++.|.
T Consensus 107 D~lvnnAg~ 115 (276)
T 2b4q_A 107 DILVNNAGT 115 (276)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=53.97 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVT 242 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~ 242 (380)
-.|++|+|.|.|.+|..+++.+..+|+ +|++.+++.++.+ +++++|++
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~ 219 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD 219 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence 468999999999999999999999999 8999999988876 45556764
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.031 Score=48.35 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=51.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce--Ee--cCCCCCccHHHHHHHHh-CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD--FV--NTSEHDRPIQEVIAEMT-NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~--vi--~~~~~~~~~~~~~~~~~-~~~~d 267 (380)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ ++++... .+ |..+.+ .+.+.++... -+++|
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~id 87 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTDAE-AMTAAAAEAEAVAPVS 87 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHH-HHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHH-HHHHHHHHHHhhCCCc
Confidence 4688999997 9999998888888899 899999998776544 3344332 22 332221 1222222211 14799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 88 ~li~~Ag~ 95 (254)
T 2wsb_A 88 ILVNSAGI 95 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999874
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.027 Score=49.94 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
+++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+.+ .|... .+ |..+.+ ..+.+.+.+.. +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g 104 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF-G 104 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence 4689999997 9999998888888899 89999999887655433 23322 22 332221 11222333322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.02 Score=50.34 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. +.|... ++ |..+. ..+.+.+.+.. -+
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNR-EDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCH-HHHHHHHHHHHHHCC
Confidence 4688999997 9999999888888899 8999999887665432 234322 22 33222 12323333221 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|+++|.
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 79999999874
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.031 Score=47.82 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=50.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-----hcCCce-Ee--cCCCCCccHHH---HHHHHhC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-----KFGVTD-FV--NTSEHDRPIQE---VIAEMTN 263 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-----~lG~~~-vi--~~~~~~~~~~~---~~~~~~~ 263 (380)
++++||+|+ |++|.+.++.....|+ +|+.++++.++.+.+. +.+... ++ |..+.+ .+.+ .+.+..
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~- 78 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAE-SVEEFSKKVLERF- 78 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH-HHHHHCC-HHHHH-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHH-HHHHHHHHHHHhc-
Confidence 578999997 9999999888888999 8999999987765442 234332 22 332221 1222 222222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 79 g~id~li~~Ag~ 90 (235)
T 3l77_A 79 GDVDVVVANAGL 90 (235)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999999874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.042 Score=48.93 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh--hHHHH----HHhcCCceE-ecCCCCCc-cH---HHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS--KRFEE----AKKFGVTDF-VNTSEHDR-PI---QEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~--~~~~~----~~~lG~~~v-i~~~~~~~-~~---~~~~~~~~ 262 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++. ++.+. +++.|.... +..+-.+. .+ .+.+.+..
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5789999997 9999998888888999 888887762 23322 333454332 21121221 12 22232222
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 127 -g~iD~lv~nAg~ 138 (294)
T 3r3s_A 127 -GGLDILALVAGK 138 (294)
T ss_dssp -TCCCEEEECCCC
T ss_pred -CCCCEEEECCCC
Confidence 379999999884
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=50.89 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.|... . .|..+.+ ..+.+.+.+.. +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g 104 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF-G 104 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc-C
Confidence 4688999987 9999998888888899 8999999887765443 334322 2 2333321 11222222222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999883
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=51.03 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCC---ce-Ee--cCCCCCccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGV---TD-FV--NTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~---~~-vi--~~~~~~~~~~~~~~~~~~ 263 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++++++.+.+ ++.+. .. ++ |..+.+ .+.+.+.+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~ 87 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNED-ETARAVDAVTA 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 4689999987 9999998888888899 899999988775443 33343 11 22 332221 12222322211
Q ss_pred --CCccEEEEcccC
Q 016933 264 --GGVDRSVECTGN 275 (380)
Q Consensus 264 --~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 88 ~~g~id~lv~nAg~ 101 (281)
T 3svt_A 88 WHGRLHGVVHCAGG 101 (281)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 379999999885
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.03 Score=48.51 Aligned_cols=79 Identities=25% Similarity=0.288 Sum_probs=52.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++++++.+.+.+ .+... ++ |..+.+ ..+.+.+.+.. +
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF-G 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence 4689999997 9999998888888899 89999999887655433 24322 22 222221 11222233322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999875
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=96.18 E-value=0.021 Score=49.43 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=52.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCc-eE--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVT-DF--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~-~v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ ++.. .. .|..+.+ ..+.+.+.+.. +++|
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD 85 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEF-GGVD 85 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-CCCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4689999987 9999999888888999 89999999887665543 3322 12 2333321 11222232322 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 86 ~lv~nAg~ 93 (248)
T 3op4_A 86 ILVNNAGI 93 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.022 Score=49.19 Aligned_cols=79 Identities=25% Similarity=0.314 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+......|+ +|+.+++++++.+.+. +.+... .+ |..+. ..+.+.+.+.. .+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDI-ESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCH-HHHHHHHHHHHHHcC
Confidence 4688999987 9999998888888899 8999999887765443 234432 22 33222 12333333322 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 82 ~id~li~~Ag~ 92 (247)
T 3lyl_A 82 AIDILVNNAGI 92 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.022 Score=50.11 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=50.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC--c-eEe--cCCCCCccHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV--T-DFV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~--~-~vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+ ++++. . .++ |..+. ..+.+.+.+.. -++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKD-EDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCH-HHHHHHHHHHHHHHSC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCH-HHHHHHHHHHHHHcCC
Confidence 4688999997 9999998888888899 899998887765443 33432 1 222 33222 12222222221 137
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 93 id~li~~Ag~ 102 (278)
T 2bgk_A 93 LDIMFGNVGV 102 (278)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999999873
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.014 Score=51.70 Aligned_cols=79 Identities=27% Similarity=0.359 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC---c-eEe--cCCCCCccHHHHHHHHh-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV---T-DFV--NTSEHDRPIQEVIAEMT- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~---~-~vi--~~~~~~~~~~~~~~~~~- 262 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.+ .+. . .++ |..+.+ .+.+.+.+..
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~ 82 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED-GQDQIINSTLK 82 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHH-HHHHHHHHHHH
Confidence 4678999987 9999998888888899 89999999877654422 232 1 122 333321 1222222221
Q ss_pred -CCCccEEEEcccC
Q 016933 263 -NGGVDRSVECTGN 275 (380)
Q Consensus 263 -~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 83 ~~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 83 QFGKIDVLVNNAGA 96 (280)
T ss_dssp HHSCCCEEEECCCC
T ss_pred hcCCCCEEEECCCC
Confidence 1379999999873
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.022 Score=49.69 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCc-eE--ecCCCCCccHHHHHHHHhC--CCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVT-DF--VNTSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~-~v--i~~~~~~~~~~~~~~~~~~--~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+. ++... .+ .|..+.+ .+.+.+.+... +++|
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~g~iD 83 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPA-QWKAAVDTAVTAFGGLH 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHH-HHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHH-HHHHHHHHHHHHcCCCC
Confidence 4688999997 9999998888888899 8999999887765543 33321 12 2333221 12222322211 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 84 ~lv~~Ag~ 91 (260)
T 1nff_A 84 VLVNNAGI 91 (260)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.026 Score=49.92 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.++.+.+.+ ++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD 81 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAF-GKID 81 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhc-CCCC
Confidence 4689999987 9999998888888899 89999999888766544 44322 22 332221 11223333322 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 ~lvnnAg~ 89 (281)
T 3zv4_A 82 TLIPNAGI 89 (281)
T ss_dssp EEECCCCC
T ss_pred EEEECCCc
Confidence 99999874
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.041 Score=48.98 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=60.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
+|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|... ..+ ..+.+. ..|+||.++..+.
T Consensus 7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~~~----~~~~~~-----~~D~vi~~v~~~~ 73 (299)
T 1vpd_A 7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---AST----AKAIAE-----QCDVIITMLPNSP 73 (299)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---CSS----HHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---cCC----HHHHHh-----CCCEEEEECCCHH
Confidence 69999999999998888888898 8999999999988888777532 111 323232 3799999998655
Q ss_pred hHHHHH-------HHhhcCCcEEEEEcC
Q 016933 278 NMISAF-------ECVHDGWGVAVLVGV 298 (380)
Q Consensus 278 ~~~~~~-------~~l~~~~G~~v~~g~ 298 (380)
.+...+ ..+.++ ..++.+..
T Consensus 74 ~~~~~~~~~~~l~~~l~~~-~~vv~~s~ 100 (299)
T 1vpd_A 74 HVKEVALGENGIIEGAKPG-TVLIDMSS 100 (299)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHhCcchHhhcCCCC-CEEEECCC
Confidence 555444 445664 55555543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.017 Score=51.50 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+.+ .+... .+ |..+.+ ..+.+.+.+..
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 117 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF- 117 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc-
Confidence 5689999987 9999998888888999 89999998876554432 33112 22 333221 11222233322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 118 g~iD~lvnnAg~ 129 (293)
T 3rih_A 118 GALDVVCANAGI 129 (293)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999884
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.023 Score=49.68 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+. +.|... ++ |..+.+ .+.+.+.+... +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE-AVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH-HHHHHHHHHHHHhC
Confidence 4688999997 9999999988888999 8999989887765432 234322 22 333221 12222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 84 ~id~lv~nAg~ 94 (262)
T 1zem_A 84 KIDFLFNNAGY 94 (262)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.022 Score=49.91 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ +.+|.+.+......|+ +|+.++++.++.+.+.+ .|... .+ |..+.+ ..+.+.+.+.. +
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g 87 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY-G 87 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-S
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence 5789999997 9999998888888899 89999999877655432 34332 22 333321 11222233322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 88 ~id~lv~nAg~ 98 (264)
T 3ucx_A 88 RVDVVINNAFR 98 (264)
T ss_dssp CCSEEEECCCS
T ss_pred CCcEEEECCCC
Confidence 79999999864
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.046 Score=47.95 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+ .+++++.+.+ ++.|... . .|..+.+ ..+.+.+.+..
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~- 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF- 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 5789999987 9999998888878899 67665 5555554433 3344432 2 2333321 11222233322
Q ss_pred CCccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++|+++++.|.. .....++..++++ |+++.++..
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~ 163 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTS 163 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeCh
Confidence 3799999998741 1233455566675 899988753
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.02 Score=50.60 Aligned_cols=78 Identities=27% Similarity=0.211 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+. +.|... . .|..+.+ ..+.+.+.+. +
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g 108 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--A 108 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--C
Confidence 4689999987 9999998888888899 8999988876654332 234322 2 2333332 1233333333 5
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 109 ~iD~lvnnAg~ 119 (275)
T 4imr_A 109 PVDILVINASA 119 (275)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0086 Score=51.49 Aligned_cols=97 Identities=9% Similarity=0.043 Sum_probs=62.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++|||+|+ |.+|...+..+...| + +|+++++++++.+.+...++. ++..+-.+ .+.+.+... ++|++|.+.|
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~-~~~~Dl~d---~~~~~~~~~-~~D~vv~~a~ 97 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQ-IIMGDVLN---HAALKQAMQ-GQDIVYANLT 97 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEE-EEECCTTC---HHHHHHHHT-TCSEEEEECC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcE-EEEecCCC---HHHHHHHhc-CCCEEEEcCC
Confidence 57999997 999999999888888 7 899999988765433322332 22222222 123333333 5899999988
Q ss_pred Chhh---HHHHHHHhhcC-CcEEEEEcCC
Q 016933 275 NIDN---MISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 275 ~~~~---~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.... ...+++.+... .++++.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iV~iSS~ 126 (236)
T 3qvo_A 98 GEDLDIQANSVIAAMKACDVKRLIFVLSL 126 (236)
T ss_dssp STTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence 7432 33455555443 2588888764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.022 Score=49.67 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce--E--ecCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD--F--VNTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~--v--i~~~~~~--~~~~~~~~~~ 261 (380)
+|+++||+|+ | ++|.+.++.....|+ +|+.+++++++.+.+. +++... . .|..+.+ ..+.+.+.+.
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999996 5 799998888888999 8999999887655443 344322 2 2333322 1122333333
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +.+|+++++.|.
T Consensus 84 ~-G~iD~lvnnAg~ 96 (256)
T 4fs3_A 84 V-GNIDGVYHSIAF 96 (256)
T ss_dssp H-CCCSEEEECCCC
T ss_pred h-CCCCEEEecccc
Confidence 2 479999998873
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.029 Score=47.90 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=50.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-EecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ ++... .+..+-.+.+..+.+.+.....+|+++++.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A 80 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA 80 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence 46899997 9999998888888999 79999999988776654 43321 221222221122222222233459999998
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 81 g~ 82 (230)
T 3guy_A 81 GS 82 (230)
T ss_dssp CC
T ss_pred Cc
Confidence 73
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.034 Score=49.07 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+ ++.|... ++ |..+.+ .+.+.+.+.. -+
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP-EIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH-HHHHHHHHHHHHhC
Confidence 4688999997 9999999888888899 899999988765443 2235322 22 333221 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 99 ~iD~lv~~Ag~ 109 (277)
T 2rhc_B 99 PVDVLVNNAGR 109 (277)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.026 Score=48.95 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=61.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhC--CCccEEEEc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN--GGVDRSVEC 272 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~--~~~d~v~d~ 272 (380)
++++||+|+ |.+|.+.+......|+ +|+++++++++.+. ....++..+. ..+.+.+.+... +.+|+++++
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d~-~~v~~~~~~~~~~~g~iD~li~~ 94 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSGE-EEIKSVIEKINSKSIKVDTFVCA 94 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSSH-HHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCCH-HHHHHHHHHHHHHcCCCCEEEEC
Confidence 678999997 9999999988888899 89999888765321 1112232221 223333443332 379999999
Q ss_pred ccCh-------h-------------------hHHHHHHHhhcCCcEEEEEcCC
Q 016933 273 TGNI-------D-------------------NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 273 ~g~~-------~-------------------~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.|.. + ....+...+.++ |+++.++..
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 146 (251)
T 3orf_A 95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS 146 (251)
T ss_dssp CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence 8831 0 123445555665 899988764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.02 Score=50.27 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=53.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCce-E--ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTD-F--VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~-v--i~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+.+ .+... . .|..+.+ ..+.+.+.+..
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF- 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence 4689999987 9999998888888999 89999999877654432 34322 2 3443332 12223333332
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.025 Score=49.15 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+ ++.+... ++ |..+. ..+.+.+++.. -+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNT-ESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCH-HHHHHHHHHHHHHcC
Confidence 4688999997 9999998888888899 899999988765433 2234322 22 33222 12323333221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 90 ~id~vi~~Ag~ 100 (260)
T 3awd_A 90 RVDILVACAGI 100 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.019 Score=50.06 Aligned_cols=79 Identities=29% Similarity=0.396 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-Ee--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+ ++++... ++ |..+. ..+.+.+.+.. -+++|
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~g~id 88 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSE-KDVQTALALAKGKFGRVD 88 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTCH-HHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCH-HHHHHHHHHHHHHCCCCC
Confidence 4689999997 9999999988888899 899998887665543 4455432 22 33222 12222222221 13799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 89 ~li~~Ag~ 96 (265)
T 2o23_A 89 VAVNCAGI 96 (265)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999873
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=48.51 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=67.5
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHhc----CC-ceEecCCCCCccHHHHHHHHhCC
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKKF----GV-TDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~l----G~-~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++++++||-+|+|. |..++.+++..+ ..+|++++.+++..+.+++. |. +.+ .....+ +. .+.....+
T Consensus 18 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d--~~-~~~~~~~~ 92 (197)
T 3eey_A 18 MFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV-TLIKDG--HQ-NMDKYIDC 92 (197)
T ss_dssp HHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGE-EEECSC--GG-GGGGTCCS
T ss_pred hcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-EEEECC--HH-HHhhhccC
Confidence 4578899999998865 788888888864 23999999999988877663 43 121 111111 10 01112234
Q ss_pred CccEEEEcccC---------------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSVECTGN---------------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+|+|+-..+- ...+..+.+.|+++ |++++...
T Consensus 93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 140 (197)
T 3eey_A 93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY 140 (197)
T ss_dssp CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence 79999865422 24688999999997 99987753
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.023 Score=50.25 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCCccHHHHHHHHhC--
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~~~~~~~~~~~~~-- 263 (380)
..++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.|... . .|..+.+ .+.+.+.+...
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~~~~ 99 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTD-EVHAAVAAAVERF 99 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHH-HHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHH-HHHHHHHHHHHHc
Confidence 35789999997 9999998888888899 8999999988765443 234432 2 2333221 12222222211
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 379999999884
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.024 Score=50.59 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=51.7
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce--E--ecCCCC-C--ccHHHHHHHH
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD--F--VNTSEH-D--RPIQEVIAEM 261 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~--v--i~~~~~-~--~~~~~~~~~~ 261 (380)
..++++||+|+ |++|.+.+..+...|+ +|+.++++.++.+.+ ++.+... + .|..+. + ..+.+.+.+.
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 35789999997 9999998888888899 899999998775433 2223211 2 344333 1 1122333332
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|++|+++|.
T Consensus 89 ~-g~iD~lv~nAg~ 101 (311)
T 3o26_A 89 F-GKLDILVNNAGV 101 (311)
T ss_dssp H-SSCCEEEECCCC
T ss_pred C-CCCCEEEECCcc
Confidence 2 379999999985
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.017 Score=52.91 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+..+ .+ +.+.+ ...|+|+-++
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~----l~ell-----~~aDvV~l~~ 228 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV---ED----LNEML-----PKCDVIVINM 228 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC---SC----HHHHG-----GGCSEEEECS
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc---CC----HHHHH-----hcCCEEEECC
Confidence 357899999999999999999999999 89999988767777777786432 11 32222 1368888777
Q ss_pred cCh-h---h-HHHHHHHhhcCCcEEEEEcC
Q 016933 274 GNI-D---N-MISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~-~---~-~~~~~~~l~~~~G~~v~~g~ 298 (380)
... + . -...+..|+++ ..++.++-
T Consensus 229 Plt~~t~~li~~~~l~~mk~g-ailIN~aR 257 (351)
T 3jtm_A 229 PLTEKTRGMFNKELIGKLKKG-VLIVNNAR 257 (351)
T ss_dssp CCCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CCCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence 532 1 1 24667778886 77776654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.022 Score=50.13 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-E--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+ ++++... . .|..+.+ ..+.+.+.+.. +++|
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id 87 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTF-GRLD 87 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4689999987 9999998888888999 899999988776554 3455432 2 2333321 11222222222 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 88 ~lv~nAg~ 95 (271)
T 3tzq_B 88 IVDNNAAH 95 (271)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=51.72 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
++++++|+|+|++|.+++..+...|+ +|++++++.++.+ +.++++...-++..+.+ .+.+ +.+|++++++
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~-----~~~~---~~~DivVn~t 188 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMD-----ELEG---HEFDLIINAT 188 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSG-----GGTT---CCCSEEEECC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEecHH-----Hhcc---CCCCEEEECC
Confidence 57899999999999999999999997 9999999988864 44455531101111111 1111 4799999999
Q ss_pred cCh
Q 016933 274 GNI 276 (380)
Q Consensus 274 g~~ 276 (380)
+..
T Consensus 189 ~~~ 191 (271)
T 1nyt_A 189 SSG 191 (271)
T ss_dssp SCG
T ss_pred CCC
Confidence 874
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.02 Score=50.04 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh---HHHHH----HhcCCce-Ee--cCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK---RFEEA----KKFGVTD-FV--NTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~---~~~~~----~~lG~~~-vi--~~~~~~--~~~~~~~~~~ 261 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.. +.+.+ ++.|... .+ |..+.+ ..+.+.+.+.
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4689999987 9999998888888899 8888766543 32222 2234432 22 333221 1122222222
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 89 ~-g~iD~lvnnAg~ 101 (262)
T 3ksu_A 89 F-GKVDIAINTVGK 101 (262)
T ss_dssp H-CSEEEEEECCCC
T ss_pred c-CCCCEEEECCCC
Confidence 2 379999999883
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=48.99 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+ .+... ++ |..+. ..+.+.+++.. -
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE-ESINKAFEEIYNLV 83 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCH-HHHHHHHHHHHHhc
Confidence 4678999997 9999999888888899 89999998877654432 34322 22 33221 12333333221 2
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 84 ~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 84 DGIDILVNNAGI 95 (248)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.034 Score=46.19 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=59.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|||+|+ |.+|...+..+...|. +|+++++++++.+.+...+.. ++..+-.+ . +.+.+... ++|+||++.|.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~D~~~--~-~~~~~~~~-~~d~vi~~a~~ 77 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH-VVVGDVLQ--A-ADVDKTVA-GQDAVIVLLGT 77 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE-EEESCTTS--H-HHHHHHHT-TCSEEEECCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceE-EEEecCCC--H-HHHHHHHc-CCCEEEECccC
Confidence 68999998 9999999988888898 899998988765322112222 22222222 1 23333333 58999999885
Q ss_pred hh----------hHHHHHHHhhc-CCcEEEEEcCC
Q 016933 276 ID----------NMISAFECVHD-GWGVAVLVGVP 299 (380)
Q Consensus 276 ~~----------~~~~~~~~l~~-~~G~~v~~g~~ 299 (380)
.. ....+++.+.. +.++++.++..
T Consensus 78 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 32 13344444433 22578877653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.024 Score=49.65 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=52.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+. +.|... . .|..+.+ ..+.+.+.+.. +
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW-G 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence 4678999997 9999998888888899 8999999988765543 234432 2 2333321 11222222222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 81 ~iD~lVnnAG~ 91 (264)
T 3tfo_A 81 RIDVLVNNAGV 91 (264)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.03 Score=48.78 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~ 236 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 47 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET 47 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 4678999997 9999998888888899 899999988776554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=54.40 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...++.++.+|+++|++.+++..+.+...++|+..+ .+ +.+.++ ..|+|+.++
T Consensus 162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~---~~----l~ell~-----~aDvV~l~~ 229 (364)
T 2j6i_A 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRV---EN----IEELVA-----QADIVTVNA 229 (364)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEEC---SS----HHHHHH-----TCSEEEECC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEec---CC----HHHHHh-----cCCEEEECC
Confidence 367899999999999999999999999339999888766677777776421 11 322221 478888877
Q ss_pred cCh----hhH-HHHHHHhhcCCcEEEEEcC
Q 016933 274 GNI----DNM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~----~~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
... ..+ ...+..++++ ..++.++.
T Consensus 230 P~t~~t~~li~~~~l~~mk~g-a~lIn~ar 258 (364)
T 2j6i_A 230 PLHAGTKGLINKELLSKFKKG-AWLVNTAR 258 (364)
T ss_dssp CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence 653 122 3456777775 77776654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.019 Score=50.79 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+ ++++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD 105 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAF-GGVD 105 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHH-SSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4688999987 9999998888888899 899999998876654 3455432 22 333321 11222232322 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 106 ~lvnnAg~ 113 (277)
T 3gvc_A 106 KLVANAGV 113 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999885
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.037 Score=50.29 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +..+++|+.. .+ +.+.++ ..|+|+.++
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~~----l~~~l~-----~aDvVil~v 212 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF----KP----LEDLLR-----ESDFVVLAV 212 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE----CC----HHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc----CC----HHHHHh-----hCCEEEECC
Confidence 357899999999999999999999999 89999998877 6666667531 11 333332 368988888
Q ss_pred cChh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 274 GNID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.... .+ ...+..++++ ..++.++.
T Consensus 213 p~~~~t~~~i~~~~~~~mk~~-ailIn~sr 241 (334)
T 2dbq_A 213 PLTRETYHLINEERLKLMKKT-AILINIAR 241 (334)
T ss_dssp CCCTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred CCChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence 6533 22 3556777875 77766653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.045 Score=49.23 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC---hhHHHHHH-hc----CCc-eEecCCCCCccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS---SKRFEEAK-KF----GVT-DFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~---~~~~~~~~-~l----G~~-~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
.++++||+|+|++|.+++..+...|+++|++++|+ .++.+.+. ++ +.. .++++++ + +.+.+.. ..
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~----~-~~l~~~l-~~ 226 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED----H-EQLRKEI-AE 226 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC----H-HHHHHHH-HT
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch----H-HHHHhhh-cC
Confidence 57899999999999999999999999889999998 66654442 22 321 2344433 1 1122211 15
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+||++++.
T Consensus 227 aDiIINaTp~ 236 (315)
T 3tnl_A 227 SVIFTNATGV 236 (315)
T ss_dssp CSEEEECSST
T ss_pred CCEEEECccC
Confidence 8999999864
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.049 Score=48.92 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=53.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+ ..+.++ ..|+||-++..+
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~---~~----~~~~~~-----~aDvvi~~vp~~ 88 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC---ES----PAEVIK-----KCKYTIAMLSDP 88 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC---SS----HHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc---CC----HHHHHH-----hCCEEEEEcCCH
Confidence 579999999999998888888898 99999999999998888876321 11 222222 257777777654
Q ss_pred hhHHHHH
Q 016933 277 DNMISAF 283 (380)
Q Consensus 277 ~~~~~~~ 283 (380)
..+...+
T Consensus 89 ~~~~~v~ 95 (310)
T 3doj_A 89 CAALSVV 95 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.036 Score=48.52 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcC--Cce-EecCCCCCccHHHHHHHHhCCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFG--VTD-FVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG--~~~-vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.+ ... .+..+-.+.+..+.+.+.. +++
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-g~i 86 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY-PKV 86 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC-CCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc-CCC
Confidence 4688999987 9999998888888899 8999999887654432 222 211 2222222222233333322 479
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 87 d~lv~nAg~ 95 (267)
T 3t4x_A 87 DILINNLGI 95 (267)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999884
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.022 Score=49.73 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHH-hc----CCce-Ee--cCCCCCccHHHHHHHHhC-
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAK-KF----GVTD-FV--NTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~-~l----G~~~-vi--~~~~~~~~~~~~~~~~~~- 263 (380)
+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++ .+.+. ++ |... .+ |..+. ..+.+.+.+...
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKG-EAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSH-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCH-HHHHHHHHHHHHh
Confidence 4678999987 9999999888888999 89999888766 44332 22 4332 22 32221 112222322211
Q ss_pred -CCccEEEEcccC
Q 016933 264 -GGVDRSVECTGN 275 (380)
Q Consensus 264 -~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 81 ~g~iD~lv~~Ag~ 93 (260)
T 1x1t_A 81 MGRIDILVNNAGI 93 (260)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 379999999874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.022 Score=49.63 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+ ++.|... . .|..+.+ .+.+.+.+.. -+
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~g 90 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE-DRERLVAMAVNLHG 90 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHHHcC
Confidence 4688999987 9999998888888899 899999988765433 2234322 2 2332211 1222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 91 ~iD~lv~~Ag~ 101 (260)
T 2zat_A 91 GVDILVSNAAV 101 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.043 Score=50.41 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC----hhH---------HHHHHhcCCceEecCCCCCccHHHHHHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS----SKR---------FEEAKKFGVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~----~~~---------~~~~~~lG~~~vi~~~~~~~~~~~~~~~~ 261 (380)
++.+|+|+|+|..|..+++++..+|+++|+.++++ .+| .+++++... ......+.+.++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~------~~~~~~L~eav~-- 262 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP------ERLSGDLETALE-- 262 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT------TCCCSCHHHHHT--
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc------cCchhhHHHHHc--
Confidence 56799999999999999999999999899999987 544 344444321 111112545442
Q ss_pred hCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 262 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
++|++|-+++..-....+++.|+++ -.++-+..+.
T Consensus 263 ---~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt 297 (388)
T 1vl6_A 263 ---GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV 297 (388)
T ss_dssp ---TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS
T ss_pred ---cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC
Confidence 3799999988433456888888875 6555555443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.026 Score=50.13 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
..+|+|+|+|++|..++..+-..|++++..+|.+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 47899999999999999999999999999998665
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0024 Score=55.18 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=66.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc----eEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT----DFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~----~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
..+|.+||-+|.| .|..+..+++..+. ++++++.+++-.+.+++.... ..+. ..+ +.+....+..+.||.
T Consensus 58 ~~~G~rVLdiG~G-~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~--~~~--a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 58 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL--KGL--WEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCT-TSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE--ESC--HHHHGGGSCTTCEEE
T ss_pred ccCCCeEEEECCC-ccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEE--eeh--HHhhcccccccCCce
Confidence 4688999999987 47778888876665 899999999998888874432 1111 111 333333343447888
Q ss_pred E-EEcccC----------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 269 S-VECTGN----------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 269 v-~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
| +|++.. ...+..+.+.|+|+ |+++.+.
T Consensus 132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred EEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence 7 565432 13466788999997 9998764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.03 Score=49.33 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC--ceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV--TDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~--~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.+++++|+|+|++|.+++..+...|+.+|++++++.+|.+.+ ++++. -.++.+++ + ....+|+|++
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~----l-------~~~~~DivIn 187 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA----L-------EGQSFDIVVN 187 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG----G-------TTCCCSEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH----h-------cccCCCEEEE
Confidence 578999999999999999888889977899999999886554 44543 12232221 1 1136999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+++.
T Consensus 188 aTp~ 191 (272)
T 3pwz_A 188 ATSA 191 (272)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 9875
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.013 Score=51.03 Aligned_cols=76 Identities=22% Similarity=0.099 Sum_probs=49.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---cCCceEecCCCCC-ccHHHHHHHHhCCCccEEEE
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---FGVTDFVNTSEHD-RPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---lG~~~vi~~~~~~-~~~~~~~~~~~~~~~d~v~d 271 (380)
+++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.+ .|.+.... +..+ ..+.+.+.+.. +++|++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~~~v~~~~~~~~~~~-g~iD~lv~ 78 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM-SEQEPAELIEAVTSAY-GQVDVLVS 78 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC-CCCSHHHHHHHHHHHH-SCCCEEEE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEE-CHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 46899987 9999999988888899 89999888776655433 34432221 2222 12333333332 37999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 79 nAg~ 82 (254)
T 1zmt_A 79 NDIF 82 (254)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 9874
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.031 Score=48.61 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++.++.+.+. +.|... .+ |..+.+ ..+.+.+.+.. +
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g 88 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF-G 88 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 4689999987 9999998888888899 8999999887765443 334432 22 332221 11222232322 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 89 ~id~lv~nAg~ 99 (256)
T 3gaf_A 89 KITVLVNNAGG 99 (256)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.026 Score=49.33 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. +.+... ++ |..+.+ ..+.+.+.+..++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 91 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 91 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4678999987 9999999988888899 8999989887655432 234322 22 222211 1122223333335
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 92 ~id~li~~Ag~ 102 (266)
T 1xq1_A 92 KLDILINNLGA 102 (266)
T ss_dssp CCSEEEEECCC
T ss_pred CCcEEEECCCC
Confidence 79999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.051 Score=49.07 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=59.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...- + ..+.+ ...|+||-++..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~---~----~~e~~-----~~aDvVi~~vp~ 97 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIHE---Q----ARAAA-----RDADIVVSMLEN 97 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEES---S----HHHHH-----TTCSEEEECCSS
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEeeC---C----HHHHH-----hcCCEEEEECCC
Confidence 3589999999999998888888898 899999999999888887763221 1 22222 146778877776
Q ss_pred hhhHHHHH------HHhhcCCcEEEEEcC
Q 016933 276 IDNMISAF------ECVHDGWGVAVLVGV 298 (380)
Q Consensus 276 ~~~~~~~~------~~l~~~~G~~v~~g~ 298 (380)
+..+...+ ..+.++ ..++..+.
T Consensus 98 ~~~~~~v~~~~~~~~~l~~~-~~vi~~st 125 (320)
T 4dll_A 98 GAVVQDVLFAQGVAAAMKPG-SLFLDMAS 125 (320)
T ss_dssp HHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence 44444333 234453 44444443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.026 Score=51.63 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+..+ .+ +.+.++ ..|+|+-++.
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~---~~----l~ell~-----~aDiV~l~~P 224 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA---ES----KDALFE-----QSDVLSVHLR 224 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC---SS----HHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe---CC----HHHHHh-----hCCEEEEecc
Confidence 57899999999999999999999999 999998775 4455666776422 11 333332 2688887765
Q ss_pred Chh----h-HHHHHHHhhcCCcEEEEEc
Q 016933 275 NID----N-MISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 275 ~~~----~-~~~~~~~l~~~~G~~v~~g 297 (380)
..+ . -...++.++++ ..++.++
T Consensus 225 lt~~t~~li~~~~l~~mk~g-ailIN~a 251 (352)
T 3gg9_A 225 LNDETRSIITVADLTRMKPT-ALFVNTS 251 (352)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred CcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence 321 1 23566777886 7777776
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.025 Score=49.95 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCce-Ee--cCCCCCccHHHHHHHHh--CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTD-FV--NTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.++++||+|+ |.+|.+.+..+...|+ +|++++++.++.+.+.+ ++... .+ |..+.+ .+.+.+.+.. .+++|
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTDGE-RIDVVAADVLARYGRVD 81 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHH-HHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHH-HHHHHHHHHHHhCCCCC
Confidence 4678999987 9999999888888999 89999998877665543 44322 22 332221 1222222221 13799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 82 ~lv~~Ag~ 89 (281)
T 3m1a_A 82 VLVNNAGR 89 (281)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.02 Score=49.92 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=46.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-Ee--cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-FV--NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.++++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++++... .+ |..+.+ ..+.+.+.+.. +++|
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id 83 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEF-GHVH 83 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence 4689999997 9999998888888999 899998887765443 3344322 22 332221 11222222222 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 84 ~lv~nAg~ 91 (257)
T 3tpc_A 84 GLVNCAGT 91 (257)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.025 Score=50.04 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c---CCceE-e--cCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F---GVTDF-V--NTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l---G~~~v-i--~~~~~~--~~~~~~~~~~~~~ 264 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+.+ + |.... + |..+.+ ..+.+.+.+.. +
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF-G 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 4689999987 9999998888888899 89999999887655433 2 33222 2 222211 11222222222 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 85 ~iD~lvnnAg~ 95 (280)
T 3tox_A 85 GLDTAFNNAGA 95 (280)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999883
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.022 Score=49.59 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
++++++||-+|+|. |.+++.+++ .|+ +|++++.++...+.+++ .+.. +.....+ +.+. +..+.+|+
T Consensus 118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d--~~~~---~~~~~fD~ 187 (254)
T 2nxc_A 118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGS--LEAA---LPFGPFDL 187 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESC--HHHH---GGGCCEEE
T ss_pred cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECC--hhhc---CcCCCCCE
Confidence 57889999999865 777777776 688 99999999998887776 3432 1111222 3332 22447999
Q ss_pred EEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 269 SVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 269 v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+...-. ...+..+.+.|+++ |++++.+.
T Consensus 188 Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~ 219 (254)
T 2nxc_A 188 LVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEECCcHHHHHHHHHHHHHHcCCC-CEEEEEee
Confidence 9865421 24577888899997 99988654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.017 Score=51.20 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=62.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|||+|+ |.+|...+..+... |. +|++++++.++...+...++..+ .|..+. +.+.+... ++|+||.+.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~-----~~l~~~~~-~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFNQ-----ESMVEAFK-GMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTCH-----HHHHHHTT-TCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCCH-----HHHHHHHh-CCCEEEEeCC
Confidence 5899997 99999988887777 88 88899898887655555555433 233221 23444433 6999999987
Q ss_pred Ch-------hhHHHHHHHhhcC-CcEEEEEcCCC
Q 016933 275 NI-------DNMISAFECVHDG-WGVAVLVGVPS 300 (380)
Q Consensus 275 ~~-------~~~~~~~~~l~~~-~G~~v~~g~~~ 300 (380)
.. .....+++.+... .++++.++...
T Consensus 75 ~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 75 IIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 52 2233455555553 14788776543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.034 Score=48.90 Aligned_cols=78 Identities=32% Similarity=0.414 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+ ++.+... ++ |..+. ..+.+.+.... -+
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDP-KSVEETISQQEKDFG 110 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCH-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCH-HHHHHHHHHHHHHhC
Confidence 4688999987 9999998887777899 898888877654433 2234322 22 33222 11223232221 13
Q ss_pred CccEEEEccc
Q 016933 265 GVDRSVECTG 274 (380)
Q Consensus 265 ~~d~v~d~~g 274 (380)
.+|++|++.|
T Consensus 111 ~id~li~~Ag 120 (279)
T 3ctm_A 111 TIDVFVANAG 120 (279)
T ss_dssp CCSEEEECGG
T ss_pred CCCEEEECCc
Confidence 6999999987
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.034 Score=51.26 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=64.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|+|+|+|.+|...+..+.. .. .|.+.+++.++.+.+++......+|..+. +.+.++.. +.|+|+++++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d~-----~~l~~~~~-~~DvVi~~~p~~ 88 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASNF-----DKLVEVMK-EFELVIGALPGF 88 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTCH-----HHHHHHHT-TCSEEEECCCGG
T ss_pred cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCCH-----HHHHHHHh-CCCEEEEecCCc
Confidence 469999999999988877643 34 78888899999988877654334444332 23444333 589999999875
Q ss_pred hhHHHHHHHhhcCCcEEEEEc
Q 016933 277 DNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 277 ~~~~~~~~~l~~~~G~~v~~g 297 (380)
-....+-.|+..+ -+++.+.
T Consensus 89 ~~~~v~~~~~~~g-~~yvD~s 108 (365)
T 3abi_A 89 LGFKSIKAAIKSK-VDMVDVS 108 (365)
T ss_dssp GHHHHHHHHHHHT-CEEEECC
T ss_pred ccchHHHHHHhcC-cceEeee
Confidence 5556666777775 6676654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.044 Score=47.61 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NGG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~~ 265 (380)
++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. +.|... .+ |..+.+ .+.+.+.+.. -++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRD-QVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH-HHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH-HHHHHHHHHHHHhCC
Confidence 468999997 9999999888888899 8999999887655432 234322 22 333221 2223232221 137
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 80 id~lv~nAg~ 89 (256)
T 1geg_A 80 FDVIVNNAGV 89 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.044 Score=47.94 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCc--eE--ecCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVT--DF--VNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~--~v--i~~~~~~--~~~~~~~~~~~ 262 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.++.+.+.+ .+.. .. .|..+.+ ..+.+.+.+..
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4689999987 9999998888888899 89999999877654432 3322 12 2333321 11222333322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 86 -g~id~lvnnAg~ 97 (265)
T 3lf2_A 86 -GCASILVNNAGQ 97 (265)
T ss_dssp -CSCSEEEECCCC
T ss_pred -CCCCEEEECCCC
Confidence 379999999884
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.047 Score=47.56 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHH---hC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEM---TN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~---~~ 263 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+ .|... .+ |..+. ..+.+.+... ..
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~-~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQE-SEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSH-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCH-HHHHHHHHHHHHhcC
Confidence 4678999987 9999999888888899 89999998877654322 24322 22 33222 1233333332 13
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+.+|+++++.|
T Consensus 82 g~id~lvnnAg 92 (260)
T 2qq5_A 82 GRLDVLVNNAY 92 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 57999999984
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.026 Score=49.64 Aligned_cols=79 Identities=29% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCceE-e--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTDF-V--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~v-i--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.|+++||+|+ |++|.+.+......|+ +|+.+++++++.+.+. +.|.... + |..+. ..+.+.+.+.. .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~-~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSE-SEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCH-HHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH-HHHHHHHHHHHHHCC
Confidence 4689999987 9999998888888999 8999999887765442 3354332 2 22221 11222222221 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.035 Score=48.99 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------------hhHHH----HHHhcCCce-Ee--cCCCCC--c
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------------SKRFE----EAKKFGVTD-FV--NTSEHD--R 252 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------------~~~~~----~~~~lG~~~-vi--~~~~~~--~ 252 (380)
.++++||+|+ |++|.+.+......|+ +|+.++++ .++.+ .+++.|... .+ |..+.+ .
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 4689999987 9999999888888999 89988886 33332 233445433 22 333221 1
Q ss_pred cHHHHHHHHhCCCccEEEEcccC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+.+.+.+.. +++|+++++.|.
T Consensus 88 ~~~~~~~~~~-g~id~lv~nAg~ 109 (281)
T 3s55_A 88 SFVAEAEDTL-GGIDIAITNAGI 109 (281)
T ss_dssp HHHHHHHHHH-TCCCEEEECCCC
T ss_pred HHHHHHHHhc-CCCCEEEECCCC
Confidence 1222333322 379999999884
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=53.75 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+..+++|+..+ .+ +.+.+ ...|+|+.++.
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~---~~----l~ell-----~~aDvV~l~~P 256 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH---AT----REDMY-----PVCDVVTLNCP 256 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC---SS----HHHHG-----GGCSEEEECSC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec---CC----HHHHH-----hcCCEEEEecC
Confidence 57899999999999999999999999 89999888766666677776431 11 22211 13678777765
Q ss_pred Ch----hhH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NI----DNM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~----~~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.. ..+ ...+..++++ ..++.++.
T Consensus 257 lt~~t~~li~~~~l~~mk~g-ailIN~aR 284 (393)
T 2nac_A 257 LHPETEHMINDETLKLFKRG-AYIVNTAR 284 (393)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred CchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence 32 122 3556667775 66666654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.034 Score=48.96 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------------hhHHHHH----HhcCCce-Ee--cCCCCCccH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------------SKRFEEA----KKFGVTD-FV--NTSEHDRPI 254 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------------~~~~~~~----~~lG~~~-vi--~~~~~~~~~ 254 (380)
.|+++||+|+ |++|.+.+......|+ +|+.++++ .++.+.+ ++.+... .+ |..+.+ .+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE-SL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH-HH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HH
Confidence 5789999997 9999998888888899 89888876 4443332 3344432 22 332221 12
Q ss_pred HHHHHHHhC--CCccEEEEcccC
Q 016933 255 QEVIAEMTN--GGVDRSVECTGN 275 (380)
Q Consensus 255 ~~~~~~~~~--~~~d~v~d~~g~ 275 (380)
.+.+.+... +++|+++++.|.
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 222222211 379999999884
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.032 Score=49.76 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+.+ + +... ++ |..+. ..+.+.+.... -
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDP-DMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH-HHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCH-HHHHHHHHHHHHHc
Confidence 4688999997 9999998888888899 89999998876654322 2 4322 22 33221 12323332221 2
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+.+|++|++.|
T Consensus 103 g~id~li~~Ag 113 (302)
T 1w6u_A 103 GHPNIVINNAA 113 (302)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 37899999988
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.028 Score=48.99 Aligned_cols=79 Identities=29% Similarity=0.276 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
+++++||+|+ |++|.+.+......|+ +|+.+ .+++++.+.+. +.|... ++ |..+.+ ..+.+.+.+..
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF- 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 5789999987 9999999888888999 77665 78877655443 234432 22 332221 11222233322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 81 g~id~lv~nAg~ 92 (258)
T 3oid_A 81 GRLDVFVNNAAS 92 (258)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.022 Score=50.50 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce--EecCCCCCc-cHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD--FVNTSEHDR-PIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~--vi~~~~~~~-~~~~~~~~~~--~~ 264 (380)
+++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+. +.|... ++..+-.+. .+.+.+.... -+
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3678999997 9999999988888899 8999999988765543 234322 222222221 1222222211 13
Q ss_pred CccEEEEc-cc
Q 016933 265 GVDRSVEC-TG 274 (380)
Q Consensus 265 ~~d~v~d~-~g 274 (380)
++|++|++ .|
T Consensus 106 ~iD~li~naag 116 (286)
T 1xu9_A 106 GLDMLILNHIT 116 (286)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999988 44
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.1 Score=41.34 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC-hhHHHHHHh---cCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS-SKRFEEAKK---FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~-~~~~~~~~~---lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.++++|+|+|.+|...++.+...|. +|++++++ +++.+.+++ .|.. ++.-+..+ .+.+.+..-.++|+++-
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~~~---~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSND---SSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTS---HHHHHHHTTTTCSEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCe-EEEcCCCC---HHHHHHcChhhCCEEEE
Confidence 4678999999999999999988998 89999887 465555543 2443 33222222 12344332347999999
Q ss_pred cccChhh---HHHHHHHhhcCCcEEEEE
Q 016933 272 CTGNIDN---MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~~g~~~~---~~~~~~~l~~~~G~~v~~ 296 (380)
+++..+. .....+.+.+. .+++..
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~-~~ii~~ 104 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred ecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence 9987432 22333444453 455543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=50.89 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=50.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-c--CChhHHHHHH-hc-CCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-D--RSSKRFEEAK-KF-GVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~--~~~~~~~~~~-~l-G~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
++++||+|+ |.+|.+.+..+...|+ +|+.+ + +++++.+.+. ++ +.+ +.+.++- ..+.+.+.+.. +++|++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~v-~~~~~~~~~~~-g~iD~l 76 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQKP-ERLVDATLQHG-EAIDTI 76 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCCG-GGHHHHHGGGS-SCEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHHH-HHHHHHHHHHc-CCCCEE
Confidence 467999987 9999999888888899 89998 6 8887766543 34 432 3332221 22333333322 379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
+++.|.
T Consensus 77 v~~Ag~ 82 (244)
T 1zmo_A 77 VSNDYI 82 (244)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999873
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.02 Score=52.38 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-----------HHHHHhcCCceE---ecCCCCC--ccHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-----------FEEAKKFGVTDF---VNTSEHD--RPIQEV 257 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-----------~~~~~~lG~~~v---i~~~~~~--~~~~~~ 257 (380)
.|+++||+|+ +++|.+.+..+...|+ +|+.++++.++ .+.+++.|.... .|..+.+ ..+.+.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 5789999997 9999998888888899 88888887653 333444554332 2333322 112223
Q ss_pred HHHHhCCCccEEEEcccC
Q 016933 258 IAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 258 ~~~~~~~~~d~v~d~~g~ 275 (380)
+.+.. +++|+++++.|.
T Consensus 123 ~~~~~-g~iDilVnnAG~ 139 (346)
T 3kvo_A 123 AIKKF-GGIDILVNNASA 139 (346)
T ss_dssp HHHHH-SCCCEEEECCCC
T ss_pred HHHHc-CCCCEEEECCCC
Confidence 33322 379999999984
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.028 Score=48.76 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh----
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT---- 262 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~---- 262 (380)
..++++||-+|+| .|..++.+|+.+ +. +|++++.+++..+.+++ .|...-+.....+ ..+.+..+.
T Consensus 77 ~~~~~~VLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd--a~~~l~~l~~~~~ 152 (247)
T 1sui_A 77 LINAKNTMEIGVY-TGYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFREGP--ALPVLDEMIKDEK 152 (247)
T ss_dssp HTTCCEEEEECCG-GGHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHSGG
T ss_pred hhCcCEEEEeCCC-cCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC--HHHHHHHHHhccC
Confidence 4566889999875 478888999887 45 99999999998887765 4542211111222 333333332
Q ss_pred -CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 -NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.||+||--... ...+..+.+.|+++ |.++.-..
T Consensus 153 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~~ 191 (247)
T 1sui_A 153 NHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDNT 191 (247)
T ss_dssp GTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEECT
T ss_pred CCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEecC
Confidence 3479999754322 34677899999997 99886543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.076 Score=45.47 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=67.7
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCC-----ceEecCCCCCccHHHHHHHHh
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGV-----TDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~-----~~vi~~~~~~~~~~~~~~~~~ 262 (380)
....++||++||=+|+|. |..+..+|+..|- ++|++++.+++..+.+++.-. ..+. .+..+.. .. ...
T Consensus 71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~-~d~~~p~---~~-~~~ 144 (233)
T 4df3_A 71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPIL-GDARFPE---KY-RHL 144 (233)
T ss_dssp SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEE-SCTTCGG---GG-TTT
T ss_pred hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEE-EeccCcc---cc-ccc
Confidence 456799999999999864 7888899998864 389999999998887766322 2222 1211100 00 011
Q ss_pred CCCccEEEEcccChh----hHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGNID----NMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~ 296 (380)
.+.+|+||.....+. .+..+.+.|+|+ |++++.
T Consensus 145 ~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~ 181 (233)
T 4df3_A 145 VEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA 181 (233)
T ss_dssp CCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence 236898886555432 466778889997 998765
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.11 Score=47.13 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh----hHHHHHHhc------CCceEecCCCCCccHHHHHHHHhCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS----KRFEEAKKF------GVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~----~~~~~~~~l------G~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
+.+|||+|+ |.+|...+..+...|. +|++++++. +..+.++.. .--.++..+-.+ .+.+.++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~- 99 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD---LTTCEQVMK- 99 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC---HHHHHHHTT-
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC---HHHHHHHhc-
Confidence 578999997 9999999998888998 899998844 334444332 111223222222 123444433
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+||++++.
T Consensus 100 ~~d~Vih~A~~ 110 (351)
T 3ruf_A 100 GVDHVLHQAAL 110 (351)
T ss_dssp TCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 69999999984
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.016 Score=50.61 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcC---CcEEEEEcCChhHHHHHHhc---CCce-E--ecCCCCC--ccHHHHHHHH
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAG---ASRIIGVDRSSKRFEEAKKF---GVTD-F--VNTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g---~~~vi~~~~~~~~~~~~~~l---G~~~-v--i~~~~~~--~~~~~~~~~~ 261 (380)
-+++++||+|+ |.+|...+..+...| + +|+.++++.++.+.++++ +... + .|..+.+ ..+.+.+.+.
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV 97 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence 34678999997 999999888888888 7 899998887654444433 3222 2 2333322 1222333333
Q ss_pred hCC-CccEEEEcccC
Q 016933 262 TNG-GVDRSVECTGN 275 (380)
Q Consensus 262 ~~~-~~d~v~d~~g~ 275 (380)
.+. ++|++|+++|.
T Consensus 98 ~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 98 TKDQGLNVLFNNAGI 112 (267)
T ss_dssp HGGGCCSEEEECCCC
T ss_pred cCCCCccEEEECCCc
Confidence 332 69999999874
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.038 Score=49.34 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------------hhHHHH----HHhcCCceE---ecCCCCC--c
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------------SKRFEE----AKKFGVTDF---VNTSEHD--R 252 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------------~~~~~~----~~~lG~~~v---i~~~~~~--~ 252 (380)
.|+++||+|+ +++|.+.+......|+ +|++++++ .++.+. +++.|.... .|..+.+ .
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 4689999997 9999998888888899 88888776 443332 334454332 2333221 1
Q ss_pred cHHHHHHHHhCCCccEEEEcccC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+.+.+.+.. +++|+++++.|.
T Consensus 106 ~~~~~~~~~~-g~iD~lv~nAg~ 127 (299)
T 3t7c_A 106 AAVDDGVTQL-GRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHH-SCCCEEEECCCC
T ss_pred HHHHHHHHHh-CCCCEEEECCCC
Confidence 1222222222 379999999873
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.073 Score=45.34 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=68.3
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--ceE--ecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--TDF--VNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--~~v--i~~~~~~~~~~~~~~~~~~~ 264 (380)
....++++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++.-. +.+ +..+..+ ... ... ..+
T Consensus 68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~--~~~-~~~-~~~ 142 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK--PQE-YAN-IVE 142 (230)
T ss_dssp CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC--GGG-GTT-TSC
T ss_pred cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCC--ccc-ccc-cCc
Confidence 445678899999999875 8888899998874499999999998877765321 111 1111111 000 000 124
Q ss_pred CccEEEEcccCh----hhHHHHHHHhhcCCcEEEEE
Q 016933 265 GVDRSVECTGNI----DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 265 ~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+|+|+.....+ ..+..+.+.|+++ |++++.
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 177 (230)
T 1fbn_A 143 KVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence 699999665553 2478888899997 998875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.032 Score=50.67 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|.|+|.|.+|...++.++.+|. +|++.+++.++.+.+.+.|...+ + +.+.++ ..|+|+.++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~----l~e~l~-----~aDvVi~~vp 219 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV----S----TPELAA-----QSDFIVVACS 219 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC----C----HHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC----C----HHHHHh-----hCCEEEEeCC
Confidence 47899999999999999999999999 89999887766666666665321 1 333332 3688888876
Q ss_pred Ch----hhH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NI----DNM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~----~~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.. ..+ ...++.++++ ..++.++.
T Consensus 220 ~~~~t~~~i~~~~~~~mk~g-ailIn~sr 247 (330)
T 2gcg_A 220 LTPATEGLCNKDFFQKMKET-AVFINISR 247 (330)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence 42 122 3556777775 66665544
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.033 Score=47.20 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=60.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|||+|+ |.+|...+..+...|. +|+++++++++.+.+. -+. .++..+-.+ .+.+.+... ++|+||+++|.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl~d---~~~~~~~~~-~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADVSS---LDEVCEVCK-GADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCTTC---HHHHHHHHT-TCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecCCC---HHHHHHHhc-CCCEEEEeCcC
Confidence 57999997 9999999999988898 9999999887653221 122 222222222 123333333 59999999886
Q ss_pred h-----------hhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 276 I-----------DNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 276 ~-----------~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
. .....+++.+... ..+++.++..
T Consensus 78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~ 113 (227)
T 3dhn_A 78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113 (227)
T ss_dssp ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence 3 1233455555543 1478888764
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.049 Score=47.98 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-EecCCCCC-ccHHHHHHHHhC-CCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-FVNTSEHD-RPIQEVIAEMTN-GGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-vi~~~~~~-~~~~~~~~~~~~-~~~d~v 269 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.++.+.+. +++... ++..+-.+ ..+.+.+..... +++|++
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l 107 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA 107 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 4688999997 9999998888888899 8999999988776554 355432 22222222 123333333311 268999
Q ss_pred EEc
Q 016933 270 VEC 272 (380)
Q Consensus 270 ~d~ 272 (380)
+.+
T Consensus 108 v~~ 110 (281)
T 3ppi_A 108 VVA 110 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.037 Score=47.95 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh--hHHHHHHhc--CCce-E--ecCCCCCccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS--KRFEEAKKF--GVTD-F--VNTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~--~~~~~~~~l--G~~~-v--i~~~~~~~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|.+.+..+...|++.|+.+++++ +..+.+++. +... + .|..+....+.+.+.+... +
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 83 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence 4678999987 99999988888888994488887775 334444433 2221 2 2333320123333332221 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 84 ~id~lv~~Ag~ 94 (254)
T 1sby_A 84 TVDILINGAGI 94 (254)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999999884
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.025 Score=48.64 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcC--CcEEEEEcCChhHHHHHHhc-CCc-eEe--cCCCCC--ccHHHHHHHHhCC-C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAG--ASRIIGVDRSSKRFEEAKKF-GVT-DFV--NTSEHD--RPIQEVIAEMTNG-G 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g--~~~vi~~~~~~~~~~~~~~l-G~~-~vi--~~~~~~--~~~~~~~~~~~~~-~ 265 (380)
++++||+|+ |.+|...+..+...| + +|++++++.++.+.++++ +.. .++ |..+.+ ..+.+.+.+..+. +
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~ 81 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG 81 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 578999987 999999888888889 7 899999998887777665 322 122 332221 1122233333332 6
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 82 id~li~~Ag~ 91 (250)
T 1yo6_A 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCcc
Confidence 9999999874
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.025 Score=51.39 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.++++|+... + +.+.+ ...|+|+.++
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~----~----l~ell-----~~aDvV~l~~ 227 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQL----P----LEEIW-----PLCDFITVHT 227 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEEC----C----HHHHG-----GGCSEEEECC
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCceeC----C----HHHHH-----hcCCEEEEec
Confidence 357899999999999999999999999 89999887765 45667787421 1 32222 1479999887
Q ss_pred cChh----hH-HHHHHHhhcCCcEEEEEcCC
Q 016933 274 GNID----NM-ISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~----~~-~~~~~~l~~~~G~~v~~g~~ 299 (380)
...+ .+ ...++.++++ ..++.++..
T Consensus 228 P~t~~t~~li~~~~l~~mk~g-ailIN~arg 257 (335)
T 2g76_A 228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCARG 257 (335)
T ss_dssp CCCTTTTTSBCHHHHTTSCTT-EEEEECSCT
T ss_pred CCCHHHHHhhCHHHHhhCCCC-cEEEECCCc
Confidence 6532 22 3577888886 888877763
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.037 Score=49.38 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=50.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh---------cCCce-Ee--cCCCCCccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK---------FGVTD-FV--NTSEHDRPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~---------lG~~~-vi--~~~~~~~~~~~~~~~~ 261 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.+.+ .+... ++ |..+. ..+.+.+...
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE-EEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH-HHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCH-HHHHHHHHHH
Confidence 4689999997 9999998888888899 89999998876654322 13221 22 32221 1222223222
Q ss_pred h--CCCccEEEEccc
Q 016933 262 T--NGGVDRSVECTG 274 (380)
Q Consensus 262 ~--~~~~d~v~d~~g 274 (380)
. -+++|++|+++|
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 1 136999999988
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.031 Score=49.16 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHHHh-c----CCce-E--ecCCCCC---ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEAKK-F----GVTD-F--VNTSEHD---RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~~~-l----G~~~-v--i~~~~~~---~~~~~~~~~~ 261 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++ ++++.+.+.+ + |... + .|..+.+ ..+.+.+.+.
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence 4678999987 9999998888888899 8999988 7776554322 2 4322 2 2433330 1222222222
Q ss_pred h--CCCccEEEEcccC
Q 016933 262 T--NGGVDRSVECTGN 275 (380)
Q Consensus 262 ~--~~~~d~v~d~~g~ 275 (380)
. -+++|++|++.|.
T Consensus 89 ~~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 1 1379999999883
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0087 Score=49.16 Aligned_cols=99 Identities=13% Similarity=0.218 Sum_probs=65.3
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--EecCCCCCccHHHHHHHHhC
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi~~~~~~~~~~~~~~~~~~ 263 (380)
...++++++||=+|+|. |..++.+++. +. +|++++.+++..+.+++ .|.+. ++. .+. +.+....+
T Consensus 17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~-----~~l~~~~~ 87 (185)
T 3mti_A 17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGH-----ENLDHYVR 87 (185)
T ss_dssp HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCG-----GGGGGTCC
T ss_pred HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcH-----HHHHhhcc
Confidence 34578899999888764 7788888887 66 99999999998887765 34322 222 111 01111223
Q ss_pred CCccEEEEcccC---------------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRSVECTGN---------------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.+|+|+-..+. ...+..+.+.|+|+ |+++++..
T Consensus 88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 136 (185)
T 3mti_A 88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY 136 (185)
T ss_dssp SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 479998755321 12457888999997 99987654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.041 Score=48.58 Aligned_cols=79 Identities=28% Similarity=0.297 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------------hhHHHHH----HhcCCce-E--ecCCCCCccH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------------SKRFEEA----KKFGVTD-F--VNTSEHDRPI 254 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------------~~~~~~~----~~lG~~~-v--i~~~~~~~~~ 254 (380)
.|+++||+|+ |++|.+.+......|+ +|+.++++ .++.+.+ ++.|... . .|..+.+ .+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA-AV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH-HH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH-HH
Confidence 4789999997 9999998888888899 89888876 4443332 3344432 2 2333321 12
Q ss_pred HHHHHHHhC--CCccEEEEcccC
Q 016933 255 QEVIAEMTN--GGVDRSVECTGN 275 (380)
Q Consensus 255 ~~~~~~~~~--~~~d~v~d~~g~ 275 (380)
.+.+.+... +++|+++++.|.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~ 109 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGI 109 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 222222211 379999999884
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.03 Score=48.95 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEcCChhHHHHH----HhcCCc-eEe--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARI-AGASRIIGVDRSSKRFEEA----KKFGVT-DFV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~-~g~~~vi~~~~~~~~~~~~----~~lG~~-~vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ |.+|...+..+.. .|+ +|+.++++.++.+.+ ++.+.. .++ |..+. ..+.+.+.++. -
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL-QSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCH-HHHHHHHHHHHHhc
Confidence 5688999997 9999998877777 899 899998987765433 222432 222 33221 12222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|+++|.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999999874
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=95.82 E-value=0.037 Score=50.63 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHH-HcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGAR-IAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~-~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.|++|.|+|.|.+|...++.++ .+|. +|++.+++.++.+..+++|+..+ .+ +.+.++ ..|+|+.+
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~~----l~ell~-----~aDvVil~ 227 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV---DS----LEELAR-----RSDCVSVS 227 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC---SS----HHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe---CC----HHHHhc-----cCCEEEEe
Confidence 45789999999999999999999 9999 89999988776666666676422 11 333232 36888888
Q ss_pred ccChh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 273 TGNID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 273 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
+.... .+ ...++.++++ ..++.++.
T Consensus 228 vp~~~~t~~li~~~~l~~mk~g-ailin~sr 257 (348)
T 2w2k_A 228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR 257 (348)
T ss_dssp CCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence 76422 22 3456677775 66665544
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.031 Score=48.19 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=50.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCce-Ee--cCCCCCccHHHHHHHHhC--C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTD-FV--NTSEHDRPIQEVIAEMTN--G 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~-vi--~~~~~~~~~~~~~~~~~~--~ 264 (380)
++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+ + +... ++ |..+. ..+.+.+.+... +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADE-GDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCH-HHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCH-HHHHHHHHHHHHHhC
Confidence 578999997 9999998888888899 89999998877654432 2 3222 22 32221 112222222211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 80 ~id~li~~Ag~ 90 (250)
T 2cfc_A 80 AIDVLVNNAGI 90 (250)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.81 E-value=0.064 Score=45.98 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=48.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIG-VDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~-~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
|+++||+|+ |.+|...+..+...|+ +|++ ..+++++.+.+. +.+... .+ |..+. ..+.+.+.+.. -+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE-ADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSH-HHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCH-HHHHHHHHHHHHHcC
Confidence 468999987 9999999888888999 7777 478876654432 234322 22 33221 12333332221 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 79 ~id~li~~Ag~ 89 (244)
T 1edo_A 79 TIDVVVNNAGI 89 (244)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.025 Score=48.99 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. +.+... ++ |..+. ..+.+.+.... -+
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE-QELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCH-HHHHHHHHHHHHhcC
Confidence 4688999997 9999998888888899 8999999887654332 234322 22 32221 11222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.041 Score=48.39 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
...++++||+|+|++|.+++..+...|+.+|+++.|+.+|.+ ++++++.+ ..+ + . ....+|+|++
T Consensus 116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~----~-------~~~~~DivIn 181 (271)
T 1npy_A 116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S----L-------ENQQADILVN 181 (271)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C----C-------TTCCCSEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h----h-------hcccCCEEEE
Confidence 345688999999999999998888899878999999987754 44556652 110 1 0 0126899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+++.
T Consensus 182 aTp~ 185 (271)
T 1npy_A 182 VTSI 185 (271)
T ss_dssp CSST
T ss_pred CCCC
Confidence 9875
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.034 Score=46.90 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=61.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+ .+. .++..+-.+ ..+.+.+... ++|+||+++|..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~~d--~~~~~~~~~~-~~d~vi~~ag~~ 74 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDVDW--TPEEMAKQLH-GMDAIINVSGSG 74 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCTTS--CHHHHHTTTT-TCSEEEECCCCT
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecccC--CHHHHHHHHc-CCCEEEECCcCC
Confidence 6899997 9999999998888898 999999988765432 222 222222221 1234444443 699999999853
Q ss_pred h---------hHHHHHHHhhcC-CcEEEEEcCCC
Q 016933 277 D---------NMISAFECVHDG-WGVAVLVGVPS 300 (380)
Q Consensus 277 ~---------~~~~~~~~l~~~-~G~~v~~g~~~ 300 (380)
. ....+++.+... .++++.++...
T Consensus 75 ~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 75 GKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp TSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 2 133444555443 25888887653
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.014 Score=50.46 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh--hHHHHHHhcCCceE---ecCCCCCccHHHHHHHHh-CCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS--KRFEEAKKFGVTDF---VNTSEHDRPIQEVIAEMT-NGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~--~~~~~~~~lG~~~v---i~~~~~~~~~~~~~~~~~-~~~~d 267 (380)
.|+++||+|+ +++|.+.+......|+ +|+..+++. +..+.+++.|.+.. .|..+.. - +++.. .+++|
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~--~---v~~~~~~g~iD 81 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFADPL--A---AKDSFTDAGFD 81 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTT--T---TTTSSTTTCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHH--H---HHHHHHhCCCC
Confidence 4789999987 9999999999999999 888888764 45666777776432 2333322 1 12211 24899
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 iLVNNAGi 89 (247)
T 4hp8_A 82 ILVNNAGI 89 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999885
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.033 Score=46.72 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=68.1
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE--ecCCCCCccHHHHHHHHhCCCccE
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF--VNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v--i~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
..+.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.+...+ +..+-.+ + ...+.+|+
T Consensus 42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~--~------~~~~~~D~ 110 (218)
T 3ou2_A 42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD--W------TPDRQWDA 110 (218)
T ss_dssp TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS--C------CCSSCEEE
T ss_pred hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc--C------CCCCceeE
Confidence 3477888999999864 7777777777 77 99999999999999998663332 2111111 1 12347999
Q ss_pred EEEcccC--------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 269 SVECTGN--------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 269 v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
|+....- ...+..+.+.|+++ |.+++....
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 148 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT 148 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence 9865321 34678888999997 999877654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=48.91 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC--
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~-- 263 (380)
...++.+||=+|+| .|..++.+|+.+ +. +|++++.+++..+.+++ .|...-+.....+ ..+.+..+..
T Consensus 55 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~ 130 (223)
T 3duw_A 55 QIQGARNILEIGTL-GGYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRTGL--ALDSLQQIENEK 130 (223)
T ss_dssp HHHTCSEEEEECCT-TSHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHHHHHTT
T ss_pred HhhCCCEEEEecCC-ccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHHHHhcC
Confidence 34577899999886 478888899877 45 99999999988877765 3543211111222 3333333321
Q ss_pred -CCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 -GGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 -~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.||+||-.... ...+..+.+.|+++ |.++....
T Consensus 131 ~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 168 (223)
T 3duw_A 131 YEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV 168 (223)
T ss_dssp CCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred CCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 469999844322 34678889999997 98876644
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.079 Score=47.51 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC---hhHHHHHH-hc----CCc-eEecCCCCCccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS---SKRFEEAK-KF----GVT-DFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~---~~~~~~~~-~l----G~~-~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
.++++||+|+|++|.+++..+...|+++|+++.|+ .+|.+.+. ++ +.. .+++..+.+ .+.+.+. .
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~-~~~~~l~-----~ 220 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQH-AFTEALA-----S 220 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHH-HHHHHHH-----H
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhh-hhHhhcc-----C
Confidence 57899999999999999999889999889999999 55554432 22 221 123332210 0111121 4
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+||++++.
T Consensus 221 ~DiIINaTp~ 230 (312)
T 3t4e_A 221 ADILTNGTKV 230 (312)
T ss_dssp CSEEEECSST
T ss_pred ceEEEECCcC
Confidence 7999999865
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.023 Score=50.05 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc---C---Cc-eE--ecCCCCCccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF---G---VT-DF--VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l---G---~~-~v--i~~~~~~~~~~~~~~~~~~ 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+. ++ . .. .+ .|..+.+ .+.+.+.+...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~ 82 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDA-GQDEILSTTLG 82 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH-HHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHH-HHHHHHHHHHH
Confidence 4678999997 9999998888888899 8999999987765443 22 2 11 12 2332221 12222222211
Q ss_pred --CCccEEEEcccC
Q 016933 264 --GGVDRSVECTGN 275 (380)
Q Consensus 264 --~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 83 ~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 83 KFGKLDILVNNAGA 96 (278)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HcCCCCEEEECCCC
Confidence 379999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.026 Score=46.21 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=68.0
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC-ceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV-TDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~-~~vi~~~~~~~~~~~~~~~~~ 262 (380)
.....+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++ .|. +.+ .....+ +.+.+..
T Consensus 26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~d--~~~~~~~-- 97 (192)
T 1l3i_A 26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEGD--APEALCK-- 97 (192)
T ss_dssp HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEESC--HHHHHTT--
T ss_pred HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcce-EEEecC--HHHhccc--
Confidence 3445678899999999876 88888888766 5 99999999998888776 343 111 111112 3332211
Q ss_pred CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.+|+|+..... ...+..+.+.|+++ |.+++...
T Consensus 98 ~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~~ 135 (192)
T 1l3i_A 98 IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTAI 135 (192)
T ss_dssp SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEec
Confidence 1379999865431 35677888889997 99887643
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.024 Score=50.25 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-----------HHHHHhcCCce-Ee--cCCCCC--ccHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-----------FEEAKKFGVTD-FV--NTSEHD--RPIQEV 257 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-----------~~~~~~lG~~~-vi--~~~~~~--~~~~~~ 257 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.++ .+.+++.|... .+ |..+.+ ..+.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 4689999997 9999998888888899 89999887652 23334445433 22 333321 112233
Q ss_pred HHHHhCCCccEEEEcccC
Q 016933 258 IAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 258 ~~~~~~~~~d~v~d~~g~ 275 (380)
+.+.. +++|+++++.|.
T Consensus 87 ~~~~~-g~id~lvnnAg~ 103 (285)
T 3sc4_A 87 TVEQF-GGIDICVNNASA 103 (285)
T ss_dssp HHHHH-SCCSEEEECCCC
T ss_pred HHHHc-CCCCEEEECCCC
Confidence 33322 379999999884
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.031 Score=49.07 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++ +++..+.+ ++.|... ++..+-.+ ..+.+.+.+.. .+
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 106 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG 106 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4689999987 9999998888888899 8888888 44443333 3344432 23222222 12223333221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 107 ~id~li~nAg~ 117 (271)
T 4iin_A 107 GLSYLVNNAGV 117 (271)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.038 Score=48.65 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=68.7
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhc-----CCceE-ecCCCCCccHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKF-----GVTDF-VNTSEHDRPIQEVIA 259 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~l-----G~~~v-i~~~~~~~~~~~~~~ 259 (380)
.....++++++||-+|+| .|..++.+++.. +. +|++++.+++..+.+++. |.+.+ +...+ +.+
T Consensus 103 ~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d----~~~--- 173 (275)
T 1yb2_A 103 IMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD----IAD--- 173 (275)
T ss_dssp ---CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC----TTT---
T ss_pred HHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc----hhc---
Confidence 455678899999999987 577888888874 45 999999999988887763 53322 11111 111
Q ss_pred HHhCCCccEEEEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 260 EMTNGGVDRSVECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
....+.+|+|+-....+ ..+..+.+.|+++ |++++...
T Consensus 174 ~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 212 (275)
T 1yb2_A 174 FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 212 (275)
T ss_dssp CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 11123699998755443 5688999999997 99887754
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.066 Score=47.28 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=49.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHHH----hc-CCce-Ee--cCCCCCccHHHHHHHHh--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEAK----KF-GVTD-FV--NTSEHDRPIQEVIAEMT-- 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~~----~l-G~~~-vi--~~~~~~~~~~~~~~~~~-- 262 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++ +.++.+.+. +. +... .+ |..+. ..+.+.+.+..
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKP-SEIADMMAMVADR 101 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCH-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCH-HHHHHHHHHHHHH
Confidence 3688999987 9999998888888999 8888887 555444332 22 3222 22 22221 11222222221
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 102 ~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 102 FGGADILVNNAGV 114 (281)
T ss_dssp TSSCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 1379999999884
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.036 Score=49.03 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCC---ceEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGV---TDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~---~~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
.+++++|+|+|++|.+.+..+...|+.+|++++++.++.+.+ ++++. -.+...++. ...+|+|+
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l------------~~~aDiII 192 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQL------------KQSYDVII 192 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC------------CSCEEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHh------------cCCCCEEE
Confidence 578999999999999988888889977899999998886544 44442 123322211 13689999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++++.
T Consensus 193 naTp~ 197 (281)
T 3o8q_A 193 NSTSA 197 (281)
T ss_dssp ECSCC
T ss_pred EcCcC
Confidence 99876
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.016 Score=53.32 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=81.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHc-CCcEEE-EEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIA-GASRII-GVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~-g~~~vi-~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
-+|.|+|.|.+|...+..++.. ++ +++ +.++++++.+.++++|+.. +.+ +.+.+. ...+|+|+.|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~~---~~~----~~~ll~---~~~~D~V~i~tp 74 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLKI---YES----YEAVLA---DEKVDAVLIATP 74 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCCB---CSC----HHHHHH---CTTCCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCce---eCC----HHHHhc---CCCCCEEEEcCC
Confidence 3689999999998877777665 66 555 4578888888777777632 222 433332 237999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-ccccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
...+.+.+.+++.. |+-+++..+.....-... ..... +++.+ .+. ..+....+..+.+++++|.+.
T Consensus 75 ~~~h~~~~~~al~a--GkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~---~~r~~p~~~~~k~~i~~g~iG 144 (359)
T 3e18_A 75 NDSHKELAISALEA--GKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ---NRRWDEDFLIIKEMFEQKTIG 144 (359)
T ss_dssp GGGHHHHHHHHHHT--TCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC---GGGGCHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHC--CCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe---eeccCHHHHHHHHHHHcCCCC
Confidence 87788888888887 555666544211110100 00111 23322 222 233344577788888888653
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.022 Score=49.41 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC-hhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS-SKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~-~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++ .++.+.+ ++.+... ++ |..+. ..+.+.+.+...
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATS-EACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCH-HHHHHHHHHHHHHc
Confidence 3678999987 9999998888888899 89888887 6554433 2234322 22 33221 122232322211
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 84 g~id~vi~~Ag~ 95 (258)
T 3afn_B 84 GGIDVLINNAGG 95 (258)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.015 Score=49.55 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCC------cEEEEEcCChhHHHHHHhc----C-----Cce--EecCCCCCccH
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGA------SRIIGVDRSSKRFEEAKKF----G-----VTD--FVNTSEHDRPI 254 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~------~~vi~~~~~~~~~~~~~~l----G-----~~~--vi~~~~~~~~~ 254 (380)
.++++++||-+|+|. |..++.+++..+. .+|++++.+++..+.+++. | .+. ++.. + .
T Consensus 81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d----~ 154 (227)
T 1r18_A 81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-D----G 154 (227)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-C----G
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC-C----c
Confidence 578899999999875 8888888887662 3899999999888777652 2 111 2211 1 1
Q ss_pred HHHHHHHhC-CCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 255 QEVIAEMTN-GGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 255 ~~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+ .+.. +.||+|+...........+.+.|+++ |++++.
T Consensus 155 ~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 193 (227)
T 1r18_A 155 RK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP 193 (227)
T ss_dssp GG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred cc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEE
Confidence 00 0112 47999998877656778999999997 988764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.02 Score=51.98 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+..+ + +.+.++ ..|+|+-++.
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~----l~ell~-----~aDvV~l~~P 209 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQV----A----CSELFA-----SSDFILLALP 209 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEEC----C----HHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCceeC----C----HHHHHh-----hCCEEEEcCC
Confidence 57899999999999999999999999 89999988756666666775321 1 333332 2578877765
Q ss_pred Ch----hhH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NI----DNM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~----~~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.. ..+ ...+..++++ ..++.++.
T Consensus 210 ~t~~t~~li~~~~l~~mk~g-ailIN~ar 237 (330)
T 4e5n_A 210 LNADTLHLVNAELLALVRPG-ALLVNPCR 237 (330)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence 31 122 3566777775 66766654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.029 Score=48.58 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=50.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-EecCCCCC-ccHHHHHHHHhC--CCccEEE
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-FVNTSEHD-RPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~~~d~v~ 270 (380)
+++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+. +++... .+..+-.+ ..+.+.+.+... +++|+++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 79 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV 79 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 36889987 9999998888888899 8999999988766543 344322 22222222 123333333322 3799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 80 nnAg~ 84 (248)
T 3asu_A 80 NNAGL 84 (248)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99873
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.043 Score=46.55 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhc----C-----Cce--EecCCCCCccHHHHHH
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKF----G-----VTD--FVNTSEHDRPIQEVIA 259 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~l----G-----~~~--vi~~~~~~~~~~~~~~ 259 (380)
.++++++||-+|+|. |..+..+++..|. .+|++++.++...+.+++. | .+. ++..+... .+
T Consensus 74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~----- 146 (226)
T 1i1n_A 74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GY----- 146 (226)
T ss_dssp TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-CC-----
T ss_pred hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-Cc-----
Confidence 378899999999874 8888889988763 2999999999988877652 2 111 22111100 00
Q ss_pred HHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
...+.+|+|+........+..+.+.|+++ |++++.-.
T Consensus 147 -~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~ 183 (226)
T 1i1n_A 147 -AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVG 183 (226)
T ss_dssp -GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred -ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEe
Confidence 11247999987766656788999999997 99886543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.091 Score=49.11 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCC--cEEEEEcCChhHHHHHHh-cC------Cce-EecCCCCCccHHHHHHHHhCCCc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGA--SRIIGVDRSSKRFEEAKK-FG------VTD-FVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~--~~vi~~~~~~~~~~~~~~-lG------~~~-vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.+|+|+|+|.+|...+..+...|. ..|++++++.++.+.+.+ ++ +.. .+|..+. ..+.+.+++. ++
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~-~~l~~~l~~~---~~ 77 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSI-EELVALINEV---KP 77 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCH-HHHHHHHHHH---CC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCH-HHHHHHHHhh---CC
Confidence 368999999999998888777773 388899999988765543 32 211 1232221 1233333332 68
Q ss_pred cEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 267 DRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 267 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
|+|+++++.......+..++..+ -.++.+
T Consensus 78 DvVin~ag~~~~~~v~~a~l~~g-~~vvD~ 106 (405)
T 4ina_A 78 QIVLNIALPYQDLTIMEACLRTG-VPYLDT 106 (405)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHT-CCEEES
T ss_pred CEEEECCCcccChHHHHHHHHhC-CCEEEe
Confidence 99999998755555666777775 555544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.03 Score=49.19 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=62.3
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
.+||.....+..|.+..---.|++++|+|.| .+|..+++++...|+ +|++..+... +
T Consensus 140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~-------------------~-- 197 (285)
T 3l07_A 140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTT-------------------D-- 197 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS-------------------S--
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch-------------------h--
Confidence 3455444444443333223478999999985 589999999999999 7777643211 1
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+.+ ..+|++|.++|.+..+.. +.++++ ..++.+|..
T Consensus 198 L~~~~-----~~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 235 (285)
T 3l07_A 198 LKSHT-----TKADILIVAVGKPNFITA--DMVKEG-AVVIDVGIN 235 (285)
T ss_dssp HHHHH-----TTCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred HHHhc-----ccCCEEEECCCCCCCCCH--HHcCCC-cEEEEeccc
Confidence 32222 248999999998655432 446785 777778764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.041 Score=48.51 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-h----cCCce-Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-K----FGVTD-FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~----lG~~~-vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.|+++||+|+ +++|.+.+......|+ +|+.++++.++.+.+. + .|... .+ |..+.+ ..+.+.+.+..
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 103 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF- 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence 5789999987 9999998888888899 8999999887654332 2 24322 22 333321 11222232322
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+++|+++++.|
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999998
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.029 Score=48.77 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+.+++ ++++.+.+ ++.+... ++..+-.+ ..+.+.+.+... +
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3678999997 9999998888888899 8888888 66655433 2234322 22222222 112222322211 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 85 ~id~li~~Ag~ 95 (261)
T 1gee_A 85 KLDVMINNAGL 95 (261)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 69999999873
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.033 Score=49.00 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-----------HHHHHhcCCce-E--ecCCCCC--ccHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-----------FEEAKKFGVTD-F--VNTSEHD--RPIQEV 257 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-----------~~~~~~lG~~~-v--i~~~~~~--~~~~~~ 257 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.++ .+.+++.|... . .|..+.+ ..+.+.
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999997 9999998888888899 89998887643 12223345432 2 2333321 112223
Q ss_pred HHHHhCCCccEEEEcccC
Q 016933 258 IAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 258 ~~~~~~~~~d~v~d~~g~ 275 (380)
+.+.. +++|+++++.|.
T Consensus 84 ~~~~~-g~iD~lvnnAG~ 100 (274)
T 3e03_A 84 TVDTF-GGIDILVNNASA 100 (274)
T ss_dssp HHHHH-SCCCEEEECCCC
T ss_pred HHHHc-CCCCEEEECCCc
Confidence 33322 379999999984
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.05 Score=47.95 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=50.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-------------ChhHHHHH----HhcCCce-E--ecCCCCC-
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-------------SSKRFEEA----KKFGVTD-F--VNTSEHD- 251 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-------------~~~~~~~~----~~lG~~~-v--i~~~~~~- 251 (380)
-.|+++||+|+ +++|.+.+......|+ +|+++++ ++++.+.+ ++.|... . .|..+.+
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 35789999997 9999998888888899 8888877 45554433 2344332 1 2333321
Q ss_pred -ccHHHHHHHHhCCCccEEEEcccC
Q 016933 252 -RPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 252 -~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
..+.+.+.+.. +++|+++++.|.
T Consensus 92 v~~~~~~~~~~~-g~id~lvnnAg~ 115 (280)
T 3pgx_A 92 LRELVADGMEQF-GRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHH-CCCCEEEECCCC
T ss_pred HHHHHHHHHHHc-CCCCEEEECCCC
Confidence 11222222222 379999999884
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.086 Score=47.42 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCCc-eEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVT-DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+|.|+|.|.+|...++.++..|.. +|++.++++++.+.++++|.. .... +... + . -...|+||-|+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~--~~~~-~------~-~~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT--SIAK-V------E-DFSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES--CTTG-G------G-GGCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcC--CHHH-H------h-hccCCEEEEeCC
Confidence 5799999999999988888888864 799999999999999998873 2221 1110 0 0 125789988887
Q ss_pred Chh---hHHHHHHHhhcCCcEEEEEcCC
Q 016933 275 NID---NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 275 ~~~---~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
... .+..+...++++ ..++.++..
T Consensus 104 ~~~~~~vl~~l~~~l~~~-~iv~d~~Sv 130 (314)
T 3ggo_A 104 VRTFREIAKKLSYILSED-ATVTDQGSV 130 (314)
T ss_dssp GGGHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred HHHHHHHHHHHhhccCCC-cEEEECCCC
Confidence 632 233344445554 555555443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.042 Score=49.64 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR-SSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.|++|.|+|.|.+|...++.++.+|+ +|++.++ +.++ +..+++|+.. . .+ +.+.++ ..|+|+-+
T Consensus 144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~--~~----l~ell~-----~aDvVil~ 209 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H--DS----LDSLLS-----VSQFFSLN 209 (320)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C--SS----HHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c--CC----HHHHHh-----hCCEEEEe
Confidence 357899999999999999999999999 9999988 7765 3556677642 1 11 333232 36888888
Q ss_pred ccChh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 273 TGNID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 273 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
+...+ .+ ...++.++++ ..++.++.
T Consensus 210 ~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar 239 (320)
T 1gdh_A 210 APSTPETRYFFNKATIKSLPQG-AIVVNTAR 239 (320)
T ss_dssp CCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred ccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence 76422 22 3456777885 77777665
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.03 Score=48.16 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh----
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT---- 262 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~---- 262 (380)
...++++||-+|+| .|..++.+|+.+. ..+|++++.+++..+.+++ .|...-+.....+ ..+.+..+.
T Consensus 67 ~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd--a~~~l~~l~~~~~ 143 (237)
T 3c3y_A 67 KLVNAKKTIEVGVF-TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD--AMLALDNLLQGQE 143 (237)
T ss_dssp HHTTCCEEEEECCT-TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHSTT
T ss_pred HhhCCCEEEEeCCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC--HHHHHHHHHhccC
Confidence 34567889999876 4777888888863 2399999999998887765 4543211111222 334343332
Q ss_pred -CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 -NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 -~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.||+||--... ...+..+.+.|+++ |.++.-..
T Consensus 144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~~ 182 (237)
T 3c3y_A 144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDNT 182 (237)
T ss_dssp CTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECT
T ss_pred CCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEecC
Confidence 3479999754332 24578889999997 98876543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.064 Score=47.35 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++ ++++.+.+ ++.|... . .|..+.+ ..+.+.+.+..
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 105 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF- 105 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH-
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence 5789999987 9999998888888999 8888874 65554333 3344432 2 2333322 12223333332
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 106 g~iD~lvnnAg~ 117 (280)
T 4da9_A 106 GRIDCLVNNAGI 117 (280)
T ss_dssp SCCCEEEEECC-
T ss_pred CCCCEEEECCCc
Confidence 379999999885
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.043 Score=47.69 Aligned_cols=78 Identities=23% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH--HHHH-Hh---cCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR--FEEA-KK---FGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~--~~~~-~~---lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
++++||+|+ |.+|.+.+..+...|+ +|+.++++.++ .+.+ ++ .+... .+ |..+.+ .+.+.+.+.. -
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKA-NFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHH-HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHH-HHHHHHHHHHHHh
Confidence 578999997 9999998888877899 89888888776 3332 22 24322 22 333221 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 80 g~iD~lv~nAg~ 91 (258)
T 3a28_C 80 GGFDVLVNNAGI 91 (258)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.028 Score=52.53 Aligned_cols=85 Identities=25% Similarity=0.236 Sum_probs=54.1
Q ss_pred ccCC-CCCCeEEEEcC-CHHHHHHHHHHHH-cCCcEEEEEcCChhH----------------HHHHHhcCCce-EecCCC
Q 016933 190 VAKP-ERGSSVAVFGL-GAVGLAAAEGARI-AGASRIIGVDRSSKR----------------FEEAKKFGVTD-FVNTSE 249 (380)
Q Consensus 190 ~~~~-~~g~~vlI~G~-g~~G~~ai~la~~-~g~~~vi~~~~~~~~----------------~~~~~~lG~~~-vi~~~~ 249 (380)
...+ +.++++||+|+ +++|++.+..+.. .|+ +|+.++++.++ .+.+++.|... .+..+-
T Consensus 54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv 132 (422)
T 3s8m_A 54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA 132 (422)
T ss_dssp TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence 3455 45788899997 8999987777666 899 88888765432 14456667543 232222
Q ss_pred CCc----cHHHHHHHHhCCCccEEEEcccC
Q 016933 250 HDR----PIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 250 ~~~----~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+. .+.+.+.+..+|++|+++++.|.
T Consensus 133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG~ 162 (422)
T 3s8m_A 133 FSDAARAQVIELIKTEMGGQVDLVVYSLAS 162 (422)
T ss_dssp TSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence 221 23344444443579999998875
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.048 Score=47.61 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-C-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--Ee--cCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-G-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FV--NTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi--~~~~~~--~~~~~~~~~~~ 262 (380)
.++++||+|+ | ++|.+.+......|+ +|+.++++.++.+.+.+ .+... ++ |..+.+ ..+.+.+.+..
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 4789999997 6 799998888888899 89999999877654432 23212 22 333221 11222233322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+.+|++|++.|.
T Consensus 100 -g~id~li~~Ag~ 111 (266)
T 3o38_A 100 -GRLDVLVNNAGL 111 (266)
T ss_dssp -SCCCEEEECCCC
T ss_pred -CCCcEEEECCCc
Confidence 379999999884
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.028 Score=48.66 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=48.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+..+...|+ +|++++++.+. ++.++..+ .|..+.+ .+.+.+.+.. -+++|+++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d~~-~~~~~~~~~~~~~g~id~lv 79 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVADAA-QVAQVCQRLLAETERLDALV 79 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTCHH-HHHHHHHHHHHHCSCCCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 4688999997 9999999988888999 89888887652 23343221 2333321 2333333221 23799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 80 ~~Ag~ 84 (250)
T 2fwm_X 80 NAAGI 84 (250)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.01 Score=50.69 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=69.3
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC---c-eEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV---T-DFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~---~-~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.....++++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++... . .++..+. .+.. ...
T Consensus 63 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~-----~~~~--~~~ 132 (231)
T 1vbf_A 63 LDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-----TLGY--EEE 132 (231)
T ss_dssp HHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-----GGCC--GGG
T ss_pred HHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc-----cccc--ccC
Confidence 4455678899999999875 88888888864 5 99999999999988877421 1 1221111 1100 012
Q ss_pred CCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+|+|+....-......+.+.|+++ |++++.-..
T Consensus 133 ~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~~ 167 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIGV 167 (231)
T ss_dssp CCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEECS
T ss_pred CCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEcC
Confidence 47999987765545567889999997 998876443
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.041 Score=49.57 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------------hhHHH----HHHhcCCceE---ecCCCCCccH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------------SKRFE----EAKKFGVTDF---VNTSEHDRPI 254 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------------~~~~~----~~~~lG~~~v---i~~~~~~~~~ 254 (380)
.|+++||+|+ |++|.+.+......|+ +|++++++ .++.+ .+++.|.... .|..+.+ .+
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~-~v 122 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA-SL 122 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH-HH
Confidence 5789999987 9999998888888899 88888765 33332 2333454332 2332221 12
Q ss_pred HHHHHHHhC--CCccEEEEcccC
Q 016933 255 QEVIAEMTN--GGVDRSVECTGN 275 (380)
Q Consensus 255 ~~~~~~~~~--~~~d~v~d~~g~ 275 (380)
.+.+++... +++|++|++.|.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 222222211 379999999884
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.04 Score=49.76 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=49.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC----------hhHH----HHHHhcCCceEe-cCCCCC-ccHH--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS----------SKRF----EEAKKFGVTDFV-NTSEHD-RPIQ-- 255 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~----------~~~~----~~~~~lG~~~vi-~~~~~~-~~~~-- 255 (380)
.|+++||+|+ +++|.+.+......|+ +|+.++++ .++. +.+++.|....+ ..+-.+ ..+.
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 5789999987 9999998888888899 89998776 3333 223344543322 112222 1122
Q ss_pred -HHHHHHhCCCccEEEEcccC
Q 016933 256 -EVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 256 -~~~~~~~~~~~d~v~d~~g~ 275 (380)
+.+.+.. +++|++|++.|.
T Consensus 105 ~~~~~~~~-g~iD~lv~nAg~ 124 (322)
T 3qlj_A 105 IQTAVETF-GGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHH-SCCCEEECCCCC
T ss_pred HHHHHHHc-CCCCEEEECCCC
Confidence 2222222 379999999884
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.12 Score=46.26 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=61.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+ ..+.++ ..|+||-++..
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~----~~e~~~-----~aDvVi~~vp~ 75 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHLC---ES----VKAALS-----ASPATIFVLLD 75 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEEC---SS----HHHHHH-----HSSEEEECCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeec---CC----HHHHHh-----cCCEEEEEeCC
Confidence 4579999999999998888888898 89999999999988888776321 11 333332 26888888876
Q ss_pred hhhHHHHH-----HHhhcCCcEEEEEcCC
Q 016933 276 IDNMISAF-----ECVHDGWGVAVLVGVP 299 (380)
Q Consensus 276 ~~~~~~~~-----~~l~~~~G~~v~~g~~ 299 (380)
+..+...+ ..+.++ ..++.++..
T Consensus 76 ~~~~~~v~~~~~l~~~~~g-~ivid~st~ 103 (306)
T 3l6d_A 76 NHATHEVLGMPGVARALAH-RTIVDYTTN 103 (306)
T ss_dssp HHHHHHHHTSTTHHHHTTT-CEEEECCCC
T ss_pred HHHHHHHhcccchhhccCC-CEEEECCCC
Confidence 54444333 234453 455555443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.01 Score=51.36 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=45.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhC--CCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN--GGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~--~~~d~v~d 271 (380)
.++++||+|+ |++|.+.+..... |+ +|+.+++++++.+.+.+......+..+-.+....+.+.+... +++|++++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~ 81 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH 81 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 3688999997 9999987766544 87 899999999888877664322222111100000000111111 37999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 82 ~Ag~ 85 (245)
T 3e9n_A 82 AAAV 85 (245)
T ss_dssp CC--
T ss_pred CCCc
Confidence 9885
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.036 Score=48.71 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=62.3
Q ss_pred cchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccH
Q 016933 176 LSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPI 254 (380)
Q Consensus 176 l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~ 254 (380)
+||.....+..|.+..---.|++++|+|.| .+|..+++++...|+ +|++..+..+ + +
T Consensus 140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~-------------------~--L 197 (285)
T 3p2o_A 140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTK-------------------D--L 197 (285)
T ss_dssp CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS-------------------C--H
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCch-------------------h--H
Confidence 454444444443333233578999999985 589999999999999 7877754211 1 3
Q ss_pred HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 255 QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+.+ ..+|++|.++|.+..+.. +.++++ ..++.+|...
T Consensus 198 ~~~~-----~~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~~ 235 (285)
T 3p2o_A 198 SLYT-----RQADLIIVAAGCVNLLRS--DMVKEG-VIVVDVGINR 235 (285)
T ss_dssp HHHH-----TTCSEEEECSSCTTCBCG--GGSCTT-EEEEECCCEE
T ss_pred HHHh-----hcCCEEEECCCCCCcCCH--HHcCCC-eEEEEeccCc
Confidence 2222 248999999998665432 446785 7777887653
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.056 Score=47.91 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+ ..+.++ ..|+||-++..+.
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~~----~~~~~~-----~advvi~~v~~~~ 69 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA---SS----PAEVCA-----ACDITIAMLADPA 69 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC---SC----HHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec---CC----HHHHHH-----cCCEEEEEcCCHH
Confidence 58899999999988887777898 89999999999888888776321 11 222222 2577777776643
Q ss_pred hHHHHH
Q 016933 278 NMISAF 283 (380)
Q Consensus 278 ~~~~~~ 283 (380)
.+...+
T Consensus 70 ~~~~v~ 75 (287)
T 3pdu_A 70 AAREVC 75 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.058 Score=46.30 Aligned_cols=74 Identities=20% Similarity=0.128 Sum_probs=49.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.+.+|||+|+ |.+|...+..+... |+ +|+++++++++.+.+ .-+.. ++..+-.+ .+.+.++.. ++|+||+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~-~~~~D~~d---~~~~~~~~~-~~d~vi~ 75 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEAD-VFIGDITD---ADSINPAFQ-GIDALVI 75 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTT-EEECCTTS---HHHHHHHHT-TCSEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCee-EEEecCCC---HHHHHHHHc-CCCEEEE
Confidence 4578999997 99999998888888 78 899999988766543 11222 22222122 123434333 5899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
++|.
T Consensus 76 ~a~~ 79 (253)
T 1xq6_A 76 LTSA 79 (253)
T ss_dssp CCCC
T ss_pred eccc
Confidence 9873
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.033 Score=49.33 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=63.3
Q ss_pred hcchhhhhhhhhhhhccCC-CCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 175 ILSCGVSTGLGATLNVAKP-ERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
.+||+....+.. ++...+ -.|++++|+|.| .+|.-+++++...|+ +|++..+.. .+
T Consensus 144 ~~PcTp~gi~~l-l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t-------------------~~- 201 (301)
T 1a4i_A 144 FIPCTPKGCLEL-IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT-------------------AH- 201 (301)
T ss_dssp CCCHHHHHHHHH-HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC-------------------SS-
T ss_pred ccCchHHHHHHH-HHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCc-------------------cc-
Confidence 455544444443 333333 478999999997 689999999999999 787774321 11
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.+ ..+|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 202 -L~~~~-----~~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~~ 240 (301)
T 1a4i_A 202 -LDEEV-----NKGDILVVATGQPEMVKG--EWIKPG-AIVIDCGINY 240 (301)
T ss_dssp -HHHHH-----TTCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCBC
T ss_pred -HHHHh-----ccCCEEEECCCCcccCCH--HHcCCC-cEEEEccCCC
Confidence 33322 248999999999765432 336786 8888888753
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.028 Score=49.52 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=50.3
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC--c-eEecCCCCCc-cHHHHHHHHhC--CCccE
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV--T-DFVNTSEHDR-PIQEVIAEMTN--GGVDR 268 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~--~-~vi~~~~~~~-~~~~~~~~~~~--~~~d~ 268 (380)
+++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+ +.. . ..+..+-.+. .+.+.+..... +.+|+
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 100 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG 100 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 68999997 9999998888888899 89999999887665433 321 1 1222222221 23333333221 36899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 101 lvnnAG~ 107 (272)
T 2nwq_A 101 LINNAGL 107 (272)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.076 Score=47.60 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=68.9
Q ss_pred hccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc---eEecCCCCCccHHHHHHH
Q 016933 189 NVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT---DFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 189 ~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~---~vi~~~~~~~~~~~~~~~ 260 (380)
.... ++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. .++..+-.+ + .
T Consensus 110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-----~ 180 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD--T-----P 180 (312)
T ss_dssp TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS--C-----C
T ss_pred HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc--C-----C
Confidence 4444 78999999999864 7788888887788 99999999998887765 3432 122111111 0 0
Q ss_pred HhCCCccEEEEc-----ccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 261 MTNGGVDRSVEC-----TGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 261 ~~~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+..+.+|+|+.. .+....+..+.+.|+|+ |++++...
T Consensus 181 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 222 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG 222 (312)
T ss_dssp CCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 112479999763 22346788999999997 99987754
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.084 Score=50.28 Aligned_cols=94 Identities=11% Similarity=0.056 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHh-cCCce-EecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKK-FGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~-lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
++.+|+|+|+|.+|.+.+..+... |+ +|++++++.++.+.+.+ .+... .++..+ .. .+.+... ++|+|++
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d----~~-~l~~~l~-~~DvVIn 94 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD----DS-ALDKVLA-DNDVVIS 94 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC----HH-HHHHHHH-TSSEEEE
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC----HH-HHHHHHc-CCCEEEE
Confidence 356899999999999988877776 66 89999999888766544 34322 223322 11 2222222 5899999
Q ss_pred cccChhhHHHHHHHhhcCCcEEEEE
Q 016933 272 CTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+++..........++..+ ..++..
T Consensus 95 ~tp~~~~~~v~~a~l~~g-~~vvd~ 118 (467)
T 2axq_A 95 LIPYTFHPNVVKSAIRTK-TDVVTS 118 (467)
T ss_dssp CSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred CCchhhhHHHHHHHHhcC-CEEEEe
Confidence 998643333344566664 444443
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.04 Score=48.78 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=50.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. +.+... ++ |..+. ..+.+.+.+.. -+
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~-~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK-EEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCH-HHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCH-HHHHHHHHHHHHhcC
Confidence 3678999997 9999998888877898 8888888877654432 234432 22 33222 12333333221 23
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.016 Score=50.18 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=68.0
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc---eEecCCCCCccHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT---DFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~---~vi~~~~~~~~~~~~~~~ 260 (380)
.....++++.+||=+|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++..+-.+ +
T Consensus 29 ~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~------ 98 (256)
T 1nkv_A 29 GRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG--Y------ 98 (256)
T ss_dssp HHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT--C------
T ss_pred HHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh--C------
Confidence 4456688999999999865 7788899988888 99999999988877765 3432 122111111 0
Q ss_pred HhCCCccEEEEcc------cChhhHHHHHHHhhcCCcEEEEEc
Q 016933 261 MTNGGVDRSVECT------GNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 261 ~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
...+.+|+|+... .....+..+.+.|+|+ |++++..
T Consensus 99 ~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 140 (256)
T 1nkv_A 99 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 140 (256)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence 0124799998521 2234578888999997 9988754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.04 Score=48.76 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=62.5
Q ss_pred cchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccH
Q 016933 176 LSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPI 254 (380)
Q Consensus 176 l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~ 254 (380)
+||....++..|.+..---.|++++|+|.| .+|..+++++...|+ +|++..+....++ +
T Consensus 145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~-------------------l 204 (300)
T 4a26_A 145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED-------------------M 204 (300)
T ss_dssp CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH-------------------H
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch-------------------h
Confidence 455444444443333333578999999985 589999999999999 8888755222111 0
Q ss_pred HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 255 QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+.++ .+|+||.++|.+..+.. +.++++ ..++.+|..
T Consensus 205 ~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 241 (300)
T 4a26_A 205 IDYLR-----TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT 241 (300)
T ss_dssp HHHHH-----TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred hhhhc-----cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence 02121 47999999998765442 346785 777888764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.06 Score=49.01 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=62.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.|+|.|.+|...+..++..|. +|++.++++++.+.++++|+... .+ ..+.++... ...|+||-++..
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~---~~----~~e~~~~a~-~~aDlVilavP~- 78 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS---AD----LEATLQRAA-AEDALIVLAVPM- 78 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE---SC----HHHHHHHHH-HTTCEEEECSCH-
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee---CC----HHHHHHhcc-cCCCEEEEeCCH-
Confidence 579999999999999988888998 89999999999999999987432 11 333333321 146889888875
Q ss_pred hhHHHHHHH---hhcCCcEEEEEcCC
Q 016933 277 DNMISAFEC---VHDGWGVAVLVGVP 299 (380)
Q Consensus 277 ~~~~~~~~~---l~~~~G~~v~~g~~ 299 (380)
..+...++. ++++ ..++.++..
T Consensus 79 ~~~~~vl~~l~~~~~~-~iv~Dv~Sv 103 (341)
T 3ktd_A 79 TAIDSLLDAVHTHAPN-NGFTDVVSV 103 (341)
T ss_dssp HHHHHHHHHHHHHCTT-CCEEECCSC
T ss_pred HHHHHHHHHHHccCCC-CEEEEcCCC
Confidence 333333332 3443 445555543
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.036 Score=48.46 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=47.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhC--CCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTN--GGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~--~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+++++++++ .-.+.. ..|..+.+ .+.+.+.+... +++|+++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~g~iD~lv 79 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTNPD-QVKASIDHIFKEYGSISVLV 79 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTCHH-HHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 3688999997 9999999888888899 89888887665 111211 12333221 12222322211 3699999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 80 ~~Ag~ 84 (264)
T 2dtx_A 80 NNAGI 84 (264)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.12 Score=43.73 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=54.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|+|+|+|.+|...++.+...|. .|+++++++++.+.+. ..|.. ++.-+..+ .+.+++..-..+|+++-+++..
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~-~i~gd~~~---~~~l~~a~i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT-IIHGDGSH---KEILRDAEVSKNDVVVILTPRD 76 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE-EEESCTTS---HHHHHHHTCCTTCEEEECCSCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe-EEEcCCCC---HHHHHhcCcccCCEEEEecCCc
Confidence 58899999999999999988999 8999999999988765 46664 33333332 1234444334799999999885
Q ss_pred h
Q 016933 277 D 277 (380)
Q Consensus 277 ~ 277 (380)
.
T Consensus 77 ~ 77 (218)
T 3l4b_C 77 E 77 (218)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.06 Score=47.79 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=34.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFEEA 236 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~ 236 (380)
.++++||+|+ |++|.+.+......|+ +|+.++ ++.++.+.+
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~ 50 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 50 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence 4678999987 9999999888888899 899998 888765543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.033 Score=49.34 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-----CC---------ceEecCCCCCccHHHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-----GV---------TDFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-----G~---------~~vi~~~~~~~~~~~~~~ 259 (380)
.++.+||++|+|. |..+..+++. +..+|++++.+++..+.+++. +. ..+ .....| ..+.+.
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v-~~~~~D--~~~~l~ 148 (281)
T 1mjf_A 74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA-KLTIGD--GFEFIK 148 (281)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE-EEEESC--HHHHHH
T ss_pred CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcE-EEEECc--hHHHhc
Confidence 4568999998753 6667777777 766999999999999888763 21 111 111122 333343
Q ss_pred HHhCCCccEEEEccc----------ChhhHHHHHHHhhcCCcEEEEE
Q 016933 260 EMTNGGVDRSVECTG----------NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g----------~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
. .+.+|+|+--.. ..+.+..+.+.|+++ |.++..
T Consensus 149 ~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~ 192 (281)
T 1mjf_A 149 N--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ 192 (281)
T ss_dssp H--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred c--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence 3 457999864332 235688999999997 998865
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.092 Score=46.13 Aligned_cols=79 Identities=27% Similarity=0.311 Sum_probs=49.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-------------ChhHHHHH----HhcCCce-E--ecCCCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-------------SSKRFEEA----KKFGVTD-F--VNTSEHDRP 253 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-------------~~~~~~~~----~~lG~~~-v--i~~~~~~~~ 253 (380)
.++++||+|+ +++|.+.+......|+ +|+.+++ +.++.+.+ ++.+... . .|..+.+ .
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~ 87 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD-R 87 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-H
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH-H
Confidence 4689999997 9999998888888999 8888877 44444332 2334332 2 2332221 1
Q ss_pred HHHHHHHHhC--CCccEEEEcccC
Q 016933 254 IQEVIAEMTN--GGVDRSVECTGN 275 (380)
Q Consensus 254 ~~~~~~~~~~--~~~d~v~d~~g~ 275 (380)
+.+.+.+... +++|+++++.|.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 2222222211 379999999874
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.067 Score=46.91 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=49.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++ +.++.+.+ ++.|... .+ |..+.+ ..+.+.+.+..
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~- 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW- 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence 4688999987 9999998888888899 7777766 55554433 3344432 22 332221 11222232322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 105 g~id~lv~nAg~ 116 (269)
T 4dmm_A 105 GRLDVLVNNAGI 116 (269)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999875
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.057 Score=47.92 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=50.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCc--EEEEEcCChhHHHHHHh-c-----CCce-E--ecCCCCCccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGAS--RIIGVDRSSKRFEEAKK-F-----GVTD-F--VNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~--~vi~~~~~~~~~~~~~~-l-----G~~~-v--i~~~~~~~~~~~~~~~~~ 262 (380)
.++++||+|+ |++|.+.+......|+. +|+.++++.++.+.+.+ + +... . .|..+.+ .+.+.+.+..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~-~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAE-KIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGG-GHHHHHHTSC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHH-HHHHHHHHHH
Confidence 4689999997 99999877665555542 78888899887665543 2 3322 2 2333322 2444444432
Q ss_pred C--CCccEEEEcccC
Q 016933 263 N--GGVDRSVECTGN 275 (380)
Q Consensus 263 ~--~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 111 ~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 111 QEFKDIDILVNNAGK 125 (287)
T ss_dssp GGGCSCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 2 379999999883
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.046 Score=48.03 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=63.6
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
.+||.....+..|.+..---.|++++|+|. +.+|..+++++...|+ +|+...+... +
T Consensus 140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~-------------------~-- 197 (286)
T 4a5o_A 140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTR-------------------D-- 197 (286)
T ss_dssp SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCS-------------------C--
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCc-------------------C--
Confidence 345554444444333222347999999997 5689999999999999 7877743211 1
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.++ .+|+++.++|.+..+.. +.++++ ..++.+|...
T Consensus 198 L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~~ 236 (286)
T 4a5o_A 198 LADHVS-----RADLVVVAAGKPGLVKG--EWIKEG-AIVIDVGINR 236 (286)
T ss_dssp HHHHHH-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCSCS
T ss_pred HHHHhc-----cCCEEEECCCCCCCCCH--HHcCCC-eEEEEecccc
Confidence 333332 47999999998765432 446885 7888888654
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.067 Score=50.85 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH---HHHHHhcCCceE-ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR---FEEAKKFGVTDF-VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~---~~~~~~lG~~~v-i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+++++||+|+ |++|...+......|+ +|+.++++... .+..++.+...+ .|..+.+ ..+.+.+.+..++.+|
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id 290 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD 290 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence 5789999987 9999998877777899 88888776432 233344565432 3443333 1233333333333599
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
++|++.|.
T Consensus 291 ~lV~nAGv 298 (454)
T 3u0b_A 291 ILVNNAGI 298 (454)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999885
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.04 Score=50.31 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +..+++|+..+. + +.+.++ ..|+|+-++.
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~~---~----l~ell~-----~aDvV~l~~P 232 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGLQRVS---T----LQDLLF-----HSDCVTLHCG 232 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTCEECS---S----HHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCCeecC---C----HHHHHh-----cCCEEEEcCC
Confidence 57899999999999999999999999 89999876554 233556653211 1 322222 2677777665
Q ss_pred Chh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
..+ .+ ...++.++++ ..++.++.
T Consensus 233 ~t~~t~~li~~~~l~~mk~g-ailIN~ar 260 (347)
T 1mx3_A 233 LNEHNHHLINDFTVKQMRQG-AFLVNTAR 260 (347)
T ss_dssp CCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred CCHHHHHHhHHHHHhcCCCC-CEEEECCC
Confidence 321 22 3556667775 66666654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.039 Score=48.46 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCC--ccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHD--RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~--~~~~~~~~~~~~~~~d~ 268 (380)
...++++||+|+ |++|.+.+......|+ +|+.+++++++.. . .... ..|..+.+ ..+.+.+.+.. +++|+
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~-~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD~ 84 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV---N-VSDHFKIDVTNEEEVKEAVEKTTKKY-GRIDI 84 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT---T-SSEEEECCTTCHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc---C-ceeEEEecCCCHHHHHHHHHHHHHHc-CCCCE
Confidence 456899999997 9999998888888899 8999888776441 1 1211 12333321 11222232222 37999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 85 lv~nAg~ 91 (269)
T 3vtz_A 85 LVNNAGI 91 (269)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9999874
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.095 Score=46.28 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.|+++||+|+ +++|.+.+......|+ +|+.++++
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~ 44 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC 44 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence 5789999997 9999998888888899 88888776
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.13 Score=45.32 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=60.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCC-CccEEEEcc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNG-GVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~ 273 (380)
.+|.|+|+|.+|.+.++.++..|.. +|++.++++++.+.+++.|... .. .+ ..+.+ . ..|+|+.++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~--~~----~~~~~-----~~~aDvVilav 70 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT--TS----IAKVE-----DFSPDFVMLSS 70 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--SC----GGGGG-----GTCCSEEEECS
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc--CC----HHHHh-----cCCCCEEEEcC
Confidence 3689999999999998888888853 6899999999999888888642 21 11 11111 2 579999998
Q ss_pred cChhh---HHHHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDN---MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~---~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..... +..+...++++ ..++.++..
T Consensus 71 p~~~~~~v~~~l~~~l~~~-~iv~~~~~~ 98 (281)
T 2g5c_A 71 PVRTFREIAKKLSYILSED-ATVTDQGSV 98 (281)
T ss_dssp CHHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred CHHHHHHHHHHHHhhCCCC-cEEEECCCC
Confidence 76432 22333445564 555555543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.047 Score=49.42 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=48.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC-----hhHHHHHH----hcCCce-Ee--cCCCCCccHHHHHHHHh
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS-----SKRFEEAK----KFGVTD-FV--NTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~-----~~~~~~~~----~lG~~~-vi--~~~~~~~~~~~~~~~~~ 262 (380)
++++||+|+ |++|.+.+..+...|+ +|+++.++ .++.+.+. +.+... .+ |..+. ..+.+.+++..
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~-~~v~~~~~~~~ 82 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQ-VSVDRAIDQII 82 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCH-HHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCH-HHHHHHHHHHH
Confidence 578999997 9999999988888999 88876654 34444333 234322 22 33322 12333333322
Q ss_pred --CCCccEEEEcccC
Q 016933 263 --NGGVDRSVECTGN 275 (380)
Q Consensus 263 --~~~~d~v~d~~g~ 275 (380)
-+++|+++++.|.
T Consensus 83 ~~~g~iD~lVnnAG~ 97 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGH 97 (324)
T ss_dssp HHHSCCSEEEECCCC
T ss_pred HHcCCCCEEEECCCc
Confidence 1379999999983
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.40 E-value=0.027 Score=49.68 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=60.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|||+|+ |.+|...+..+... |+ +|++++++.++.+.+...+...+ .|..+. +.+.+... ++|+||++.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~-----~~l~~~~~-~~d~vi~~a 74 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQP-----ESLQKAFA-GVSKLLFIS 74 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTCH-----HHHHHHTT-TCSEEEECC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCCH-----HHHHHHHh-cCCEEEEcC
Confidence 5899997 99999988877776 87 88888888877665555555433 232221 23444433 589999998
Q ss_pred cCh-------hhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 274 GNI-------DNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 274 g~~-------~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
+.. .....+++.+... .++++.++..
T Consensus 75 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 75 GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 741 1223444555443 1478877653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.053 Score=45.92 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=67.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC---
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN--- 263 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~--- 263 (380)
...++++||=+|+|. |..++.+++.++ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+.....
T Consensus 61 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~ 137 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSP--AKDTLAELIHAGQ 137 (225)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHHHHTTTC
T ss_pred HhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCC--HHHHHHHhhhccC
Confidence 345678999998864 788888998763 3499999999998887765 3543211111222 3344433332
Q ss_pred -CCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 -GGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 -~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.||+||-.... ...+..+.+.|+++ |.++....
T Consensus 138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 175 (225)
T 3tr6_A 138 AWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNV 175 (225)
T ss_dssp TTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECS
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 579999843332 24577888999997 99887544
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.094 Score=47.10 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=53.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|... ..+ ..+.+. ..|+||.++..+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~~~----~~~~~~-----~~DvVi~av~~~ 97 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGARL---GRT----PAEVVS-----TCDITFACVSDP 97 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCEE---CSC----HHHHHH-----HCSEEEECCSSH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCEE---cCC----HHHHHh-----cCCEEEEeCCCH
Confidence 569999999999998888877898 7999999999888887777531 111 222222 368888888754
Q ss_pred hhHHHHH
Q 016933 277 DNMISAF 283 (380)
Q Consensus 277 ~~~~~~~ 283 (380)
..+...+
T Consensus 98 ~~~~~v~ 104 (316)
T 2uyy_A 98 KAAKDLV 104 (316)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.025 Score=51.28 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=48.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH--HHHHhcCC--c-eEecCCCCC-ccHHHHHHHHhCCCccE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF--EEAKKFGV--T-DFVNTSEHD-RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~--~~~~~lG~--~-~vi~~~~~~-~~~~~~~~~~~~~~~d~ 268 (380)
+.+|||+|+ |.+|...+..+...|+ +|++++++.++. +.+++++. . .++..+-.+ ..+.+.++.. .+|+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~d~ 78 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKV---QPDE 78 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH---CCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhc---CCCE
Confidence 578999997 9999998888888898 899998876542 23444431 1 122112112 1122333222 6899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
||+++|.
T Consensus 79 vih~A~~ 85 (345)
T 2z1m_A 79 VYNLAAQ 85 (345)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999874
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.064 Score=48.59 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFEEA 236 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~ 236 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.++ +++++.+.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~ 87 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 87 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence 4688999987 9999999988888999 899888 888766544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.057 Score=47.53 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=62.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe-cCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV-NTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi-~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|||+|+|.+|...+..+...|+ +|+++++++++.+.+...+...+. |..+ +. -.++|+||++++.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d----~~-------~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE----PS-------LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC----CC-------CTTCCEEEECCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc----cc-------cCCCCEEEECCCc
Confidence 579999999999998888888898 999999999988888777765432 2222 11 2379999999874
Q ss_pred h----hhHHHHHHHhhc---CCcEEEEEcC
Q 016933 276 I----DNMISAFECVHD---GWGVAVLVGV 298 (380)
Q Consensus 276 ~----~~~~~~~~~l~~---~~G~~v~~g~ 298 (380)
. .....+++.+.. +..+++.++.
T Consensus 74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence 2 223444444433 1257776653
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.045 Score=47.58 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=48.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-E--ecCCCCC--ccHHHHHHHHhCCCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d~ 268 (380)
.++++||+|+ +++|.+.+......|+ +|+.+++..++ ..++++... . .|..+.+ ..+.+.+.+ -+++|+
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~g~id~ 82 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTDEAAVASALDLAET--MGTLRI 82 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTCHHHHHHHHHHHHH--HSCEEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hCCCCE
Confidence 4688999997 9999998888888899 88888875543 344555432 2 2333221 112222222 247999
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
++++.|.
T Consensus 83 lv~nAg~ 89 (257)
T 3tl3_A 83 VVNCAGT 89 (257)
T ss_dssp EEECGGG
T ss_pred EEECCCC
Confidence 9999984
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.081 Score=46.14 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCCh---hHHHHHHh-cCCceEecCCCCC-ccHHHHHHHHhC--C
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSS---KRFEEAKK-FGVTDFVNTSEHD-RPIQEVIAEMTN--G 264 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~---~~~~~~~~-lG~~~vi~~~~~~-~~~~~~~~~~~~--~ 264 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++++ +..+.+.+ .+...++..+-.+ ..+.+.+.+... +
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP 86 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4688999985 6999998888888899 898888876 33333322 3332333222222 123333333332 2
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 87 ~iD~lv~~Ag~ 97 (265)
T 1qsg_A 87 KFDGFVHSIGF 97 (265)
T ss_dssp SEEEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.088 Score=47.97 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHh-cCCc--eEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKK-FGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~-lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.+++|||+|+ |.+|...+..+... |+.+|+++++++.+.+.+.+ +... .++..+-.+ .+.+.+... ++|+|
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~~-~~D~V 95 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD---LERLNYALE-GVDIC 95 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC---HHHHHHHTT-TCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC---HHHHHHHHh-cCCEE
Confidence 4689999997 99999988877777 86689999999887665543 3211 122222222 123444433 69999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
|++++.
T Consensus 96 ih~Aa~ 101 (344)
T 2gn4_A 96 IHAAAL 101 (344)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.074 Score=47.95 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC---------ChhHHHH----HHhcCCceEecCCCCCc--cHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR---------SSKRFEE----AKKFGVTDFVNTSEHDR--PIQEVI 258 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~---------~~~~~~~----~~~lG~~~vi~~~~~~~--~~~~~~ 258 (380)
.|+++||+|+ |++|...+..+...|+ +|+++++ +.++.+. +++.+...+.|..+.+. .+.+.+
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~ 86 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA 86 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 4688999997 9999998888888899 8888643 4444432 33345444555554331 222333
Q ss_pred HHHhCCCccEEEEcccC
Q 016933 259 AEMTNGGVDRSVECTGN 275 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~ 275 (380)
.+.. +++|++|++.|.
T Consensus 87 ~~~~-g~iD~lVnnAG~ 102 (319)
T 1gz6_A 87 LDTF-GRIDVVVNNAGI 102 (319)
T ss_dssp HHHT-SCCCEEEECCCC
T ss_pred HHHc-CCCCEEEECCCC
Confidence 3322 379999999873
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.11 Score=47.09 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=74.7
Q ss_pred eEEEEcCCHHHHHH-H-HHHHHcCCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLAA-A-EGARIAGASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~a-i-~la~~~g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|+|.+|... + .+.+ .++ +++ +.++++++.+. .+++|...++ .+ +.+.+. ...+|+|+.++
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~-~~~-~~vav~d~~~~~~~~~~~~~g~~~~~--~~----~~~~l~---~~~~D~V~i~t 70 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRA-TGG-EVVSMMSTSAERGAAYATENGIGKSV--TS----VEELVG---DPDVDAVYVST 70 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHH-TTC-EEEEEECSCHHHHHHHHHHTTCSCCB--SC----HHHHHT---CTTCCEEEECS
T ss_pred eEEEEcccHHHHHhhhHHhhc-CCC-eEEEEECCCHHHHHHHHHHcCCCccc--CC----HHHHhc---CCCCCEEEEeC
Confidence 58899999999875 5 4445 777 554 56777777654 4557764222 11 333221 13699999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-ccccc--cccEEEeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~--~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
....+...+..++.. |+-+++..+.....-... ..... +++.+.-.. ..+....+..+.+++++|.+.
T Consensus 71 p~~~h~~~~~~al~~--Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~--~~r~~p~~~~~~~~i~~g~iG 141 (332)
T 2glx_A 71 TNELHREQTLAAIRA--GKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH--HLRNAAAHRAMRDAIAEGRIG 141 (332)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC--CGGGSHHHHHHHHHHHTTTTS
T ss_pred ChhHhHHHHHHHHHC--CCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee--hhhcCHHHHHHHHHHHcCCCC
Confidence 887777788888877 455556443211110000 00111 233332211 122334477788888888653
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.033 Score=48.67 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=62.8
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
.+||.....+..|.+ .+ -.|++++|+|.| .+|..+++++...|+ +|++..+.. .+
T Consensus 131 ~~PcTp~gv~~lL~~-~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t-------------------~~-- 186 (276)
T 3ngx_A 131 LVPATPRAVIDIMDY-YG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKT-------------------KD-- 186 (276)
T ss_dssp SCCHHHHHHHHHHHH-HT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC-------------------SC--
T ss_pred CCCCcHHHHHHHHHH-hC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCc-------------------cc--
Confidence 345544444444433 33 689999999985 689999999999999 887774421 11
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+.+++ +|++|.++|.+..+.. +.++++ ..++.+|..
T Consensus 187 L~~~~~~-----ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 224 (276)
T 3ngx_A 187 IGSMTRS-----SKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN 224 (276)
T ss_dssp HHHHHHH-----SSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred HHHhhcc-----CCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence 4444433 7999999998765443 346775 777777764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.047 Score=47.47 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=50.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHH---cCCcEEEEEcCChhHHHHHHh-c-----CCce-Ee--cCCCCCccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARI---AGASRIIGVDRSSKRFEEAKK-F-----GVTD-FV--NTSEHDRPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~---~g~~~vi~~~~~~~~~~~~~~-l-----G~~~-vi--~~~~~~~~~~~~~~~~ 261 (380)
.++++||+|+ |++|.+.+..... .|+ +|+.+++++++.+.+.+ + +... .+ |..+. ..+.+.+...
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~-~~v~~~~~~~ 82 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE-AGVQRLLSAV 82 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH-HHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCH-HHHHHHHHHH
Confidence 3578999987 9999987777666 799 89999999877654432 2 3322 22 33322 1233334333
Q ss_pred hC----CCcc--EEEEcccC
Q 016933 262 TN----GGVD--RSVECTGN 275 (380)
Q Consensus 262 ~~----~~~d--~v~d~~g~ 275 (380)
.. +.+| +++++.|.
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~ 102 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAAT 102 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCC
T ss_pred HhccccccCCccEEEECCcc
Confidence 22 3678 99998773
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.077 Score=42.53 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh-CCCccEE
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT-NGGVDRS 269 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~-~~~~d~v 269 (380)
.++++++||-+|+|. |..+..+++..|. .++++++.++ ..+. .--.++..+-.+....+.+.... .+.+|+|
T Consensus 19 ~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp CCCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence 367889999999876 8888888888642 3999999887 3322 11122222222211222333323 3489999
Q ss_pred EE-----cccC------------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 270 VE-----CTGN------------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 270 ~d-----~~g~------------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+. ..+. ...+..+.+.|+++ |.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~ 138 (180)
T 1ej0_A 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVFQ 138 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEec
Confidence 87 2332 25677888999997 998876543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.12 Score=49.05 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=56.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+++|+|+|+|.+|...+..+...|+ +|++++++.++.+.+.+ ++....+..+-.+ . +.+.+... ++|+|+++++
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d--~-~~l~~~l~-~~DvVIn~a~ 77 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND--D-AALDAEVA-KHDLVISLIP 77 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC--H-HHHHHHHT-TSSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC--H-HHHHHHHc-CCcEEEECCc
Confidence 5689999999999998888877898 79889998887665433 3321222122222 2 12333322 6999999998
Q ss_pred ChhhHHHHHHHhhcCCcEEE
Q 016933 275 NIDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v 294 (380)
..........++..+ ..++
T Consensus 78 ~~~~~~i~~a~l~~g-~~vv 96 (450)
T 1ff9_A 78 YTFHATVIKSAIRQK-KHVV 96 (450)
T ss_dssp --CHHHHHHHHHHHT-CEEE
T ss_pred cccchHHHHHHHhCC-CeEE
Confidence 632323344555553 4443
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=95.22 E-value=0.055 Score=47.92 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHHH-----hcCCce-E--ecCCCC---CccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRFEEAK-----KFGVTD-F--VNTSEH---DRPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~~-----~lG~~~-v--i~~~~~---~~~~~~~~~~~ 261 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.++++. ++.+.+. +.|... + .|..+. ...+.+.+.+.
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence 4678999997 9999998888888899 888888887 5543332 234322 2 233331 11122222222
Q ss_pred h--CCCccEEEEcccC
Q 016933 262 T--NGGVDRSVECTGN 275 (380)
Q Consensus 262 ~--~~~~d~v~d~~g~ 275 (380)
. -+++|++|++.|.
T Consensus 101 ~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 101 FRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 1 1379999999873
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.082 Score=45.39 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=47.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ |.+|...+..+...|+ +|+++ .+++++.+.+ ++.+... .+ |..+. ..+.+.+.+.. -
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNP-EDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSH-HHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCH-HHHHHHHHHHHHhc
Confidence 4678999997 9999998888888899 88887 5665544332 3334332 22 33222 11222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 82 ~~~d~vi~~Ag~ 93 (247)
T 2hq1_A 82 GRIDILVNNAGI 93 (247)
T ss_dssp SCCCEEEECC--
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.057 Score=46.33 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=48.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHHH----hcCCce-E-ecCCCCC-ccHHHHHHHHh--CC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEAK----KFGVTD-F-VNTSEHD-RPIQEVIAEMT--NG 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~~----~lG~~~-v-i~~~~~~-~~~~~~~~~~~--~~ 264 (380)
++++||+|+ |.+|...+..+...|+ +|+++ +++.++.+.+. +.+... . +..+-.+ ..+.+.+.+.. -+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 367999997 9999998888888899 78887 78877655432 234322 2 2222222 11222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|++|++.|.
T Consensus 80 ~~d~li~~Ag~ 90 (245)
T 2ph3_A 80 GLDTLVNNAGI 90 (245)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.08 Score=45.81 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=56.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh---CCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT---NGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~---~~~~d~v~d~ 272 (380)
+++||+|+ |.+|.+.+..+...|+ +|+++++++++.+. . -..|-.-.+.++++. .+++|+++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~-----~~~Dl~~~~~v~~~~~~~~~~id~lv~~ 69 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------D-----LSTAEGRKQAIADVLAKCSKGMDGLVLC 69 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------C-----TTSHHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------c-----cccCCCCHHHHHHHHHHhCCCCCEEEEC
Confidence 46899997 9999999988888899 89988887654321 0 011100111222222 2468999999
Q ss_pred ccChh------------------hHHHHHHHhhcC-CcEEEEEcCC
Q 016933 273 TGNID------------------NMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 273 ~g~~~------------------~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
.|... ....++..+... .|+++.++..
T Consensus 70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 115 (257)
T 1fjh_A 70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV 115 (257)
T ss_dssp CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence 88532 133445555432 2789988764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.046 Score=47.79 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=47.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE--ecCCCCC--ccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF--VNTSEHD--RPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v--i~~~~~~--~~~~~~~~~~~~~~~d~v 269 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++ .+..... .|..+.+ ..+.+.+.+.. +++|++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDil 82 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE-----GLPEELFVEADLTTKEGCAIVAEATRQRL-GGVDVI 82 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT-----TSCTTTEEECCTTSHHHHHHHHHHHHHHT-SSCSEE
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh-----CCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence 6899999987 9999999998889999 89888886542 1111112 2332221 12333333332 379999
Q ss_pred EEccc
Q 016933 270 VECTG 274 (380)
Q Consensus 270 ~d~~g 274 (380)
+++.|
T Consensus 83 VnnAG 87 (261)
T 4h15_A 83 VHMLG 87 (261)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99876
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.072 Score=46.36 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHH----HHhcCCce-Ee--cCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEE----AKKFGVTD-FV--NTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~----~~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~ 263 (380)
.++++||+|+ +++|.+.+......|+ +|+.+ .+++++.+. +++.|... .+ |..+.+ ..+.+.+.+..
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF- 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence 4689999997 9999998888888899 77777 555554433 23345432 22 332221 11222232322
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 85 g~id~lv~nAg~ 96 (259)
T 3edm_A 85 GEIHGLVHVAGG 96 (259)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.074 Score=46.40 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEe--cCCCCC--ccHHHHHHHH
Q 016933 193 PERGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFV--NTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi--~~~~~~--~~~~~~~~~~ 261 (380)
..+++++||+|+ +++|.+.+......|+ +|+.++++++..+.+++ .+.-.++ |..+.+ ..+.+.+.+.
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 456789999984 6999998888888899 89888887654444433 3432233 332221 1122223332
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|++|++.|.
T Consensus 90 ~-g~id~lv~nAg~ 102 (271)
T 3ek2_A 90 W-DSLDGLVHSIGF 102 (271)
T ss_dssp C-SCEEEEEECCCC
T ss_pred c-CCCCEEEECCcc
Confidence 2 379999999874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.031 Score=50.82 Aligned_cols=99 Identities=20% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC------C--ceEecCCCCCccHHHHHHHHhCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG------V--TDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG------~--~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++.+||++|+| .|..+..+++..+..+|++++.+++..+.+++.- . ..+ .....| ..+.+.....+
T Consensus 118 ~~~~~~VLdIG~G-~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv-~~~~~D--~~~~l~~~~~~ 193 (334)
T 1xj5_A 118 IPNPKKVLVIGGG-DGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-NLVIGD--GVAFLKNAAEG 193 (334)
T ss_dssp SSCCCEEEEETCS-SSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-EEEESC--HHHHHHTSCTT
T ss_pred CCCCCEEEEECCC-ccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-EEEECC--HHHHHHhccCC
Confidence 3556899999875 3666777887665459999999999888887632 1 111 111122 44434333234
Q ss_pred CccEEEEccc----------ChhhHHHHHHHhhcCCcEEEEE
Q 016933 265 GVDRSVECTG----------NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 265 ~~d~v~d~~g----------~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.||+|+--.. ....+..+.+.|+++ |.+++.
T Consensus 194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~ 234 (334)
T 1xj5_A 194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ 234 (334)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 7999875221 235688999999997 999875
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.074 Score=48.81 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+... + +.+.++ ..|+|+-++.
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~~----~----l~ell~-----~aDvV~l~~P 239 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEPA----S----LEDVLT-----KSDFIFVVAA 239 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEEC----C----HHHHHH-----SCSEEEECSC
T ss_pred CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeeeC----C----HHHHHh-----cCCEEEEcCc
Confidence 47899999999999999999999999 999998875 3444555665311 1 222221 3566666544
Q ss_pred Chh----hH-HHHHHHhhcCCcEEEEEc
Q 016933 275 NID----NM-ISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 275 ~~~----~~-~~~~~~l~~~~G~~v~~g 297 (380)
..+ .+ ...+..++++ ..++.++
T Consensus 240 lt~~T~~li~~~~l~~mk~g-ailIN~a 266 (365)
T 4hy3_A 240 VTSENKRFLGAEAFSSMRRG-AAFILLS 266 (365)
T ss_dssp SSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred CCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence 211 11 3455666664 6666655
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.049 Score=47.62 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=50.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
+++++||+|+ |.+|...+..+...|+ +|+++++ +.++.+.+ ++.|... ++ |..+. ..+.+.+.+.. -
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP-SEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSH-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCH-HHHHHHHHHHHHHc
Confidence 4678999997 9999998888888899 8888888 66654432 3345432 22 33222 12323232221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 98 ~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 98 GGLDFVMSNSGM 109 (274)
T ss_dssp SCEEEEECCCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.35 Score=43.96 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=79.9
Q ss_pred eEEEEcCCHHHHH-HHHHHHHc-CCcEEEE-EcCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLA-AAEGARIA-GASRIIG-VDRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~-ai~la~~~-g~~~vi~-~~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|+|.+|.. .+...+.. ++ ++++ .++++++. ++++++|...++. + +.+.+. ...+|+|+-|+
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y~--d----~~ell~---~~~iDaV~I~t 94 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAFG--S----YEEMLA---SDVIDAVYIPL 94 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEES--S----HHHHHH---CSSCSEEEECS
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeeeC--C----HHHHhc---CCCCCEEEEeC
Confidence 6899999999975 34455544 67 5654 46666664 4556788766542 2 434332 23799999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
....+.+.+.+++.. |+-|++..+.....-..... ... +++.+ .+. ..+....+..+-+++++|.+.
T Consensus 95 P~~~H~~~~~~al~a--GkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~---~~R~~p~~~~~k~~i~~G~iG 165 (350)
T 4had_A 95 PTSQHIEWSIKAADA--GKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY---MITYSPVWQKVRSLIDEGAIG 165 (350)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC---GGGGSHHHHHHHHHHHTTTTS
T ss_pred CCchhHHHHHHHHhc--CCEEEEeCCcccchhhHHHHHHHHHHcCCceeEee---eeecCHHHHHhhHhhhcCCCC
Confidence 987788889998887 67777866532111111000 011 22222 222 233344577777888888663
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.047 Score=49.31 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-----C--CceE--ecCCCCCccHHHHHHHHhC
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-----G--VTDF--VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-----G--~~~v--i~~~~~~~~~~~~~~~~~~ 263 (380)
-++.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+. + ...+ .|..+.+ .+.++..
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~-----~~~~~~~ 82 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQG-----AYDEVIK 82 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTT-----TTTTTTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChH-----HHHHHHc
Confidence 45789999997 9999999888888898 899998988776554432 2 2222 2332221 1222222
Q ss_pred CCccEEEEcccChh--------------hHHHHHHHhh--cCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNID--------------NMISAFECVH--DGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~~--------------~~~~~~~~l~--~~~G~~v~~g~~ 299 (380)
++|+||++++... ....+++.+. .+.++++.++..
T Consensus 83 -~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~ 133 (342)
T 1y1p_A 83 -GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST 133 (342)
T ss_dssp -TCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred -CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence 6899999987421 1223444443 222688887653
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.17 Score=44.94 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=58.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.. + ..+ ..+.+. ..|+|+-++..+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~~~----~~~~~~-----~~D~vi~~vp~~ 71 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-A--CEN----NQKVAA-----ASDIIFTSLPNA 71 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-E--CSS----HHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-e--cCC----HHHHHh-----CCCEEEEECCCH
Confidence 479999999999988887777898 899999999988887776653 1 111 323232 368888888765
Q ss_pred hhHHHHH-------HHhhcCCcEEEEEc
Q 016933 277 DNMISAF-------ECVHDGWGVAVLVG 297 (380)
Q Consensus 277 ~~~~~~~-------~~l~~~~G~~v~~g 297 (380)
..+...+ ..+.++ ..++.+.
T Consensus 72 ~~~~~v~~~~~~l~~~l~~~-~~vv~~~ 98 (301)
T 3cky_A 72 GIVETVMNGPGGVLSACKAG-TVIVDMS 98 (301)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence 5444444 345554 4454443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.08 Score=50.03 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHH-HcCC--cEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGAR-IAGA--SRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~-~~g~--~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
+....+|||+|+|++|..++.++. ..++ ..|+.++..+.+.+..+.+|.... ...+..+ ..+.+..+..++ |+
T Consensus 10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadn--v~~~l~aLl~~~-Dv 86 (480)
T 2ph5_A 10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQN--YLEVIGSTLEEN-DF 86 (480)
T ss_dssp BCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTT--HHHHTGGGCCTT-CE
T ss_pred ecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchh--HHHHHHHHhcCC-CE
Confidence 445567999999999999887775 4555 267888777766666666776332 2222332 555555555544 99
Q ss_pred EEEcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 269 SVECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 269 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|++++-....+..+-.|+..+ -.++....
T Consensus 87 VIN~s~~~~~l~Im~acleaG-v~YlDTa~ 115 (480)
T 2ph5_A 87 LIDVSIGISSLALIILCNQKG-ALYINAAT 115 (480)
T ss_dssp EEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred EEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence 999876656677788888886 66666654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.062 Score=47.66 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc----CCce-EecCCCCCccHHHHHHHHhCCCc
Q 016933 194 ERGSSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF----GVTD-FVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 194 ~~g~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l----G~~~-vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
-+++++||+| +|++|.+.+..+...|+ +|+.++++.++.+.+. ++ ++.. ..|..+. +.+.+... .+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~-----~~~~~~~~-~~ 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD-----ASRAEAVK-GA 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH-----HHHHHHTT-TC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCH-----HHHHHHHH-hC
Confidence 3678999999 59999999999888999 6999999887765443 22 3222 2333321 22333322 48
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++++++|.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999974
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.084 Score=47.92 Aligned_cols=45 Identities=27% Similarity=0.373 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
.|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +..+++|+
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~ 189 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA 189 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence 57899999999999999999999999 89999988776 54555554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.1 Score=45.89 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCCeEEEEcC-CH--HHHHHHHHHHHcCCcEEEEEcCCh--hHHHHHHh-cCCceEecCCCCCc-cHHHHHHHHh--CCC
Q 016933 195 RGSSVAVFGL-GA--VGLAAAEGARIAGASRIIGVDRSS--KRFEEAKK-FGVTDFVNTSEHDR-PIQEVIAEMT--NGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~--~G~~ai~la~~~g~~~vi~~~~~~--~~~~~~~~-lG~~~vi~~~~~~~-~~~~~~~~~~--~~~ 265 (380)
.++++||+|+ |. +|.+.+......|+ +|+.++++. ++.+.+.+ .+--.++..+-.+. .+.+.+.+.. -+.
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 103 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG 103 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 4689999985 44 99998888888899 899888877 55555543 33222332222221 1222222221 137
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++++++|.
T Consensus 104 id~li~nAg~ 113 (280)
T 3nrc_A 104 LDAIVHSIAF 113 (280)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999999874
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.17 Score=48.75 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-------HHHHHhcCCce-EecCCCCCc-cHHHHHHHHh
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-------FEEAKKFGVTD-FVNTSEHDR-PIQEVIAEMT 262 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-------~~~~~~lG~~~-vi~~~~~~~-~~~~~~~~~~ 262 (380)
+++++++||+|+ |.+|...+..+...|+.+|+.++++... .+.+++.|... ++.-+-.+. .+.+.+..
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~-- 333 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA-- 333 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH--
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc--
Confidence 578899999987 9999998887777898678888787531 23334456533 222222221 12222322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+.+|+||++.|.
T Consensus 334 -~~ld~VVh~AGv 345 (511)
T 2z5l_A 334 -YPPNAVFHTAGI 345 (511)
T ss_dssp -SCCSEEEECCCC
T ss_pred -CCCcEEEECCcc
Confidence 579999999884
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.018 Score=49.93 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=48.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh--CCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT--NGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~--~~~~d~v~d 271 (380)
.++++||+|+ |.+|.+.+......|+ +|+++++++++.+.+. + ...|..+.+ .+.+.+.+.. -+++|++++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~~~-~~~~~~~~~~~~~g~id~lv~ 87 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTDSD-AVDRAFTAVEEHQGPVEVLVS 87 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTCHH-HHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCCHH-HHHHHHHHHHHHcCCCCEEEE
Confidence 4688999997 9999999888888899 8998888766543221 1 223443322 1222222221 136899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 88 ~Ag~ 91 (247)
T 1uzm_A 88 NAGL 91 (247)
T ss_dssp ECSC
T ss_pred CCCC
Confidence 9874
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.1 Score=44.62 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.++++.+||=+|+| .|..+..+++. |+ +|++++.+++..+.+++. . .++ ..+ ..+.+..+..+.+|+|+.
T Consensus 38 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~---~~d--~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 38 YFKGCRRVLDIGCG-RGEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVV---KSD--AIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp GTTTCSCEEEETCT-TTHHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEE---CSC--HHHHHHTSCTTCBSEEEE
T ss_pred hhcCCCeEEEEeCC-CCHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-cee---ecc--HHHHhhhcCCCCeeEEEE
Confidence 35788999999875 35556666665 87 899999999999998876 2 222 122 333332333458999986
Q ss_pred cc-----cC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 272 CT-----GN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 272 ~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.. .. ...+..+.+.|+|+ |.+++...
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 141 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP 141 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence 42 22 25678899999997 99886543
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.065 Score=47.65 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=57.5
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-------hHHHHHH---hcCCceE-ecCCCCCccHHHHHHHHhC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-------KRFEEAK---KFGVTDF-VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-------~~~~~~~---~lG~~~v-i~~~~~~~~~~~~~~~~~~ 263 (380)
+.+|||+|+ |.+|...+..+...|. +|++++++. ++.+.++ ..|+..+ .|..+. +.+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~-----~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDH-----ETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCH-----HHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCH-----HHHHHHHh
Confidence 457999998 9999998888887898 888888876 5554443 3455433 233221 23333333
Q ss_pred CCccEEEEcccCh--hhHHHHHHHhhcC--CcEEE
Q 016933 264 GGVDRSVECTGNI--DNMISAFECVHDG--WGVAV 294 (380)
Q Consensus 264 ~~~d~v~d~~g~~--~~~~~~~~~l~~~--~G~~v 294 (380)
++|+||++++.. .....+++.+... ..+++
T Consensus 76 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 76 -QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp -TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred -CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence 599999998852 2234455555442 14665
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.026 Score=50.99 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=47.0
Q ss_pred cCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH--HHHHHhc----CCceEecCCCCCccHHHHHHHHhC
Q 016933 191 AKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR--FEEAKKF----GVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 191 ~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~--~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
...+++.+|||+|+ |.+|...+..+...|+ +|++++++.++ .+.++.+ +.. ++..+-.+. +.+.++..
T Consensus 9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~---~~~~~~~~ 83 (335)
T 1rpn_A 9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQ-YEDGDMADA---CSVQRAVI 83 (335)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEE-EEECCTTCH---HHHHHHHH
T ss_pred cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceE-EEECCCCCH---HHHHHHHH
Confidence 34578899999997 9999999988888898 89999887643 1223333 221 222221221 12333222
Q ss_pred C-CccEEEEcccC
Q 016933 264 G-GVDRSVECTGN 275 (380)
Q Consensus 264 ~-~~d~v~d~~g~ 275 (380)
+ .+|+||++++.
T Consensus 84 ~~~~d~Vih~A~~ 96 (335)
T 1rpn_A 84 KAQPQEVYNLAAQ 96 (335)
T ss_dssp HHCCSEEEECCSC
T ss_pred HcCCCEEEECccc
Confidence 3 68999999874
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.098 Score=45.80 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=50.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHHh
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~~ 262 (380)
..++++||+|+ |++|.+.+..+...|+ +|+.+ .+++++.+.+. +.+... ++ |..+.+ ..+.+.+.+..
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45788999997 9999999988888999 66555 67776655433 334322 22 322211 11222333322
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+++|++|+++|.
T Consensus 103 -g~id~li~nAg~ 114 (272)
T 4e3z_A 103 -GRLDGLVNNAGI 114 (272)
T ss_dssp -SCCCEEEECCCC
T ss_pred -CCCCEEEECCCC
Confidence 379999999873
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.059 Score=48.33 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=68.4
Q ss_pred hhcchhhhhhhhhhhhc--------cC-CCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHH-HHHHhcCCc
Q 016933 174 CILSCGVSTGLGATLNV--------AK-PERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRF-EEAKKFGVT 242 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~--------~~-~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~-~~~~~lG~~ 242 (380)
..+||....++..+.+. .+ --.|++++|+|+| .+|..+++++...|+ +|++++++..+. +...+++..
T Consensus 146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~ 224 (320)
T 1edz_A 146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN 224 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC
T ss_pred CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh
Confidence 34565555555444332 23 2468999999997 569999999999999 888887763321 111223221
Q ss_pred --eEecCC-CCCccHHHHHHHHhCCCccEEEEcccChhh-HHHHHHHhhcCCcEEEEEcCCC
Q 016933 243 --DFVNTS-EHDRPIQEVIAEMTNGGVDRSVECTGNIDN-MISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 243 --~vi~~~-~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
...... ....++.+.++ .+|+||.++|.+.. +.. +.++++ ..++.+|...
T Consensus 225 ~~~~t~~~~t~~~~L~e~l~-----~ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~r 278 (320)
T 1edz_A 225 KHHVEDLGEYSEDLLKKCSL-----DSDVVITGVPSENYKFPT--EYIKEG-AVCINFACTK 278 (320)
T ss_dssp CCEEEEEEECCHHHHHHHHH-----HCSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSSC
T ss_pred cccccccccccHhHHHHHhc-----cCCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCCc
Confidence 000000 00011333333 38999999998654 332 225775 7777887754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.037 Score=48.11 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=47.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~--~~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+. +.. ..|..+.+ .+.+.+.+.. -+.+|+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d~~-~v~~~~~~~~~~~g~iD~lv 92 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITDTE-QVEQAYKEIEETHGPVEVLI 92 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTSHH-HHHHHHHHHHHHTCSCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCCHH-HHHHHHHHHHHHcCCCCEEE
Confidence 3678999997 9999999888888899 88888887654321 211 12333321 1222232221 23689999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 93 ~nAg~ 97 (253)
T 2nm0_A 93 ANAGV 97 (253)
T ss_dssp EECSC
T ss_pred ECCCC
Confidence 98874
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.055 Score=49.68 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=48.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHh-cCCceE-ecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKK-FGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~-lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
+.+|||+|+ |.+|...+..+... |+ +|++++++.++.+.+.+ .+...+ .|..+ +.+. +.+... ++|+||+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~-d~~~---~~~~~~-~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITI-NKEW---VEYHVK-KCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTT-CHHH---HHHHHH-HCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCC-CHHH---HHHHhc-cCCEEEE
Confidence 468999997 99999988888777 88 89999998776554433 233322 23321 2112 222222 5899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+++.
T Consensus 98 ~A~~ 101 (372)
T 3slg_A 98 LVAI 101 (372)
T ss_dssp CBCC
T ss_pred cCcc
Confidence 8874
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.041 Score=47.35 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc----cHHHHHHHHhC-CCcc
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR----PIQEVIAEMTN-GGVD 267 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~----~~~~~~~~~~~-~~~d 267 (380)
..++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+ +....+..+-.+. .+.+.+.+..+ +++|
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD 78 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD 78 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 45788999997 9999998888888899 8999988876532 1111221111111 12222333332 4799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 79 ~lv~~Ag~ 86 (241)
T 1dhr_A 79 AILCVAGG 86 (241)
T ss_dssp EEEECCCC
T ss_pred EEEEcccc
Confidence 99999883
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.14 Score=45.56 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC-----hhHHHHHHh---cCCceEecCCCCCccHHHHHHHHhCCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS-----SKRFEEAKK---FGVTDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~-----~~~~~~~~~---lG~~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
..+|||+|+ |.+|...+..+...|. +|++++++ +++.+.+++ .++.. +..+-.+ .+.+.+... ++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~d---~~~l~~~~~-~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKL-IEASLDD---HQRLVDALK-QV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEE-ECCCSSC---HHHHHHHHT-TC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeEE-EeCCCCC---HHHHHHHHh-CC
Confidence 357999997 9999999988888898 88888887 445444433 34432 2222122 123444333 59
Q ss_pred cEEEEcccCh------hhHHHHHHHhhcC--CcEEE
Q 016933 267 DRSVECTGNI------DNMISAFECVHDG--WGVAV 294 (380)
Q Consensus 267 d~v~d~~g~~------~~~~~~~~~l~~~--~G~~v 294 (380)
|+||++++.. .....+++.+... -.+++
T Consensus 78 d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 78 DVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp SEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred CEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 9999998753 2334555655553 13666
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.048 Score=47.96 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=58.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|||+|+ |.+|...+..+... |+ +|+++++++++.+.+...+...+ .|..+. +.+.+... ++|+||++.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~-----~~~~~~~~-~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGDE-----AALTSALQ-GVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTCH-----HHHHHHTT-TCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCCH-----HHHHHHHh-CCCEEEEeC
Confidence 4899998 99999988887776 87 88888888777665555555432 232221 23444433 589999998
Q ss_pred cCh-----hhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 274 GNI-----DNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 274 g~~-----~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
+.. .....+++.+... .++++.++..
T Consensus 74 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 74 SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp --------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 742 1233444444432 2578877653
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.13 Score=44.82 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=48.6
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChh---HHHHHHh-cCCceEe--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSK---RFEEAKK-FGVTDFV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~---~~~~~~~-lG~~~vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|+ |.+|.+.+..+...|+ +|+.++++++ ..+.+.+ .+...++ |..+.+ .+.+.+++...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDE-ELDALFAGVKEAF 84 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHH-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHH-HHHHHHHHHHHHc
Confidence 4688999985 6999998888777899 8998888875 3333322 3422333 333221 12222222211
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 85 g~iD~lv~~Ag~ 96 (261)
T 2wyu_A 85 GGLDYLVHAIAF 96 (261)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.056 Score=48.67 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC------C-ceEecCCCCCccHHHHHHHHhCCCc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG------V-TDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG------~-~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.- . +.-+.....| ..+.+.. ..+.|
T Consensus 107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D--~~~~l~~-~~~~f 182 (314)
T 2b2c_A 107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD--GFEFLKN-HKNEF 182 (314)
T ss_dssp SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC--HHHHHHH-CTTCE
T ss_pred CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEECh--HHHHHHh-cCCCc
Confidence 3457999998753 667777777655459999999999999888732 1 1101111222 4343433 33479
Q ss_pred cEEEEcccC----------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVECTGN----------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+--... .+.+..+.+.|+++ |.+++..
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~ 222 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG 222 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence 998743311 35678899999997 9988764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.034 Score=47.64 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=46.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc----cHHHHHHHHhC-CCccEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR----PIQEVIAEMTN-GGVDRS 269 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~----~~~~~~~~~~~-~~~d~v 269 (380)
++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+ +....+..+-.+. .+.+.+.+..+ +++|++
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l 76 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 76 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence 578999997 9999999988888899 8999988876532 1111221111111 12222333332 479999
Q ss_pred EEccc
Q 016933 270 VECTG 274 (380)
Q Consensus 270 ~d~~g 274 (380)
+++.|
T Consensus 77 v~~Ag 81 (236)
T 1ooe_A 77 FCVAG 81 (236)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 99988
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.14 Score=44.89 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=58.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|... +. .+ ..+. ...|+||-++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~--~~--------~~~~--~~~D~vi~av~~- 67 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAG--QD--------LSLL--QTAKIIFLCTPI- 67 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEE--SC--------GGGG--TTCSEEEECSCH-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCcccc--CC--------HHHh--CCCCEEEEECCH-
Confidence 58899999999998888888898 8999999999988888887631 21 11 1112 358999999876
Q ss_pred hhHHHHHHHh----hcCCcEEEEEc
Q 016933 277 DNMISAFECV----HDGWGVAVLVG 297 (380)
Q Consensus 277 ~~~~~~~~~l----~~~~G~~v~~g 297 (380)
......++.+ +++ ..++.++
T Consensus 68 ~~~~~~~~~l~~~~~~~-~~vv~~~ 91 (279)
T 2f1k_A 68 QLILPTLEKLIPHLSPT-AIVTDVA 91 (279)
T ss_dssp HHHHHHHHHHGGGSCTT-CEEEECC
T ss_pred HHHHHHHHHHHhhCCCC-CEEEECC
Confidence 3444444433 343 4455443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.18 Score=46.21 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+ ..+.+... ..+|+||-++..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~---~s----~~e~~~~a--~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA---RS----IEEFCAKL--VKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC---SS----HHHHHHHS--CSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe---CC----HHHHHhcC--CCCCEEEEeCCH
Confidence 3679999999999998888888898 99999999999988887775321 11 33333221 135777777766
Q ss_pred hhhHHHHHH
Q 016933 276 IDNMISAFE 284 (380)
Q Consensus 276 ~~~~~~~~~ 284 (380)
. .+...++
T Consensus 92 ~-~v~~vl~ 99 (358)
T 4e21_A 92 A-VVDSMLQ 99 (358)
T ss_dssp G-GHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 4343333
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.063 Score=46.63 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH-HHHHh----cCCce-Ee--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF-EEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~-~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |.+|...+..+...|+ +|++++++.++. +.+++ .+... .+ |..+. ..+.+.++... -
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT-DIVTKTIQQIDADL 90 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCH-HHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCH-HHHHHHHHHHHHhc
Confidence 3578999997 9999998888888899 898888854432 22222 24322 22 33322 12333333322 2
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 91 ~~id~li~~Ag~ 102 (265)
T 1h5q_A 91 GPISGLIANAGV 102 (265)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 369999999874
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=44.22 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=49.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCc------EEEEEcCChhHHHHHHh----cCCce-EecCCCCCc-cHHHHHHHHh
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGAS------RIIGVDRSSKRFEEAKK----FGVTD-FVNTSEHDR-PIQEVIAEMT 262 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~------~vi~~~~~~~~~~~~~~----lG~~~-vi~~~~~~~-~~~~~~~~~~ 262 (380)
++++||+|+ |.+|...+..+...|+. +|+.++++.++.+.+.+ .+... ++..+-.+. .+.+.+....
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 568999997 99999988877777874 78888898877654432 24322 222222221 1222222221
Q ss_pred --CCCccEEEEcccC
Q 016933 263 --NGGVDRSVECTGN 275 (380)
Q Consensus 263 --~~~~d~v~d~~g~ 275 (380)
-+++|++|++.|.
T Consensus 82 ~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGV 96 (244)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HhCCCCCEEEEcCCc
Confidence 1379999999873
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.11 Score=47.23 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++. +++. +.. .+ + +.+.+. ..|+|+.++.
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~~----~~-~--l~ell~-----~aDvV~l~~p 208 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GYY----VD-S--LDDLYK-----QADVISLHVP 208 (333)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TCB----CS-C--HHHHHH-----HCSEEEECSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Cee----cC-C--HHHHHh-----hCCEEEEcCC
Confidence 47899999999999999999999999 899998877654 2332 221 11 1 333332 3799998886
Q ss_pred Chh----hH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NID----NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~----~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
... .+ ...++.++++ ..++.++.
T Consensus 209 ~~~~t~~li~~~~l~~mk~g-a~lIn~ar 236 (333)
T 1j4a_A 209 DVPANVHMINDESIAKMKQD-VVIVNVSR 236 (333)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred CcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence 432 12 3567888886 87777765
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.039 Score=48.49 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=63.0
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCcc
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRP 253 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~ 253 (380)
.+||+....+..|.+..---.|++++|+|.| .+|.-+++++...|+ +|+...+.. . +
T Consensus 138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t-------------------~--~ 195 (288)
T 1b0a_A 138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT-------------------K--N 195 (288)
T ss_dssp SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC-------------------S--C
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc-------------------h--h
Confidence 3555444444433232223578999999997 579999999999999 887774322 1 1
Q ss_pred HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 254 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 254 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+.+++ +|+||.++|.+..+.. +.++++ ..++.+|...
T Consensus 196 L~~~~~~-----ADIVI~Avg~p~lI~~--~~vk~G-avVIDVgi~r 234 (288)
T 1b0a_A 196 LRHHVEN-----ADLLIVAVGKPGFIPG--DWIKEG-AIVIDVGINR 234 (288)
T ss_dssp HHHHHHH-----CSEEEECSCCTTCBCT--TTSCTT-CEEEECCCEE
T ss_pred HHHHhcc-----CCEEEECCCCcCcCCH--HHcCCC-cEEEEccCCc
Confidence 4444433 7999999998765432 235775 7788887653
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.073 Score=46.14 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=49.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh-cCCce-Ee--cCCCCC--ccHHHHHHHHhCCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK-FGVTD-FV--NTSEHD--RPIQEVIAEMTNGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~-lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~~ 266 (380)
|+++||+|+ +++|.+.+...... |+ +|+.+++++++.+.+.+ +|... .+ |..+.+ ..+.+.+.+.. +++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGH-GKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHH-SCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhc-CCc
Confidence 578999987 99999877665555 46 88888899887766544 44322 22 333221 11222222222 379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 80 d~lvnnAg~ 88 (254)
T 3kzv_A 80 DSLVANAGV 88 (254)
T ss_dssp CEEEEECCC
T ss_pred cEEEECCcc
Confidence 999999884
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.2 Score=45.69 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=79.3
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHc-CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGLGAVGL-AAAEGARIA-GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~g~~G~-~ai~la~~~-g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-+|.|+|.|.+|. ..+...+.. ++ +++ +.++++++.+. ++++|+..+- + +.+.+. ...+|+|+.|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~~~~---~----~~~ll~---~~~~D~V~i~ 96 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFGGEPVE---G----YPALLE---RDDVDAVYVP 96 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHCSEEEE---S----HHHHHT---CTTCSEEEEC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcCCCCcC---C----HHHHhc---CCCCCEEEEC
Confidence 3689999999997 555555555 67 554 55777776554 4567875431 1 333221 2379999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
+....+.+.+..++.. |+-+++..+.....-.... .... +++.+ .+. ..+....+..+-+++++|.+.
T Consensus 97 tp~~~h~~~~~~al~a--Gk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~---~~R~~p~~~~~k~~i~~G~iG 168 (350)
T 3rc1_A 97 LPAVLHAEWIDRALRA--GKHVLAEKPLTTDRPQAERLFAVARERGLLLMENF---MFLHHPQHRQVADMLDEGVIG 168 (350)
T ss_dssp CCGGGHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEEC---GGGGCTHHHHHHHHHHTTTTC
T ss_pred CCcHHHHHHHHHHHHC--CCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe---cccCCHHHHHHHHHHhcCCCC
Confidence 9987788888888887 5556676543111111100 0111 23333 222 233445678888888888663
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.085 Score=48.03 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+... |+..+ ++ +.+.++ ..|+|+-++.
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~---~~----l~ell~-----~sDvV~l~~P 236 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH---DT----LDSLLG-----ASDIFLIAAP 236 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC---SS----HHHHHH-----TCSEEEECSC
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe---CC----HHHHHh-----hCCEEEEecC
Confidence 47899999999999999999999999 9999988765444332 44321 11 322222 3678877765
Q ss_pred Ch-h---hH-HHHHHHhhcCCcEEEEEcC
Q 016933 275 NI-D---NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~-~---~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.. + .+ ...+..++++ ..++.++-
T Consensus 237 lt~~T~~li~~~~l~~mk~g-ailIN~aR 264 (345)
T 4g2n_A 237 GRPELKGFLDHDRIAKIPEG-AVVINISR 264 (345)
T ss_dssp CCGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence 31 1 12 4566777775 66666653
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.093 Score=45.22 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=48.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHH----HhcCCce-EecCCCCC-ccHHH---HHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEA----KKFGVTD-FVNTSEHD-RPIQE---VIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~---~~~~~~~ 263 (380)
.++++||+|+ |.+|.+.+......|+ +|+.+++ +.++.+.+ ++.|.+. .+..+-.+ ..+.+ .+.+..
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~- 80 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF- 80 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence 3678999987 9999998888888899 7777655 54544333 3345433 22222222 11222 222222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 3osu_A 81 GSLDVLVNNAGI 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999884
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.093 Score=45.11 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=43.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+++||+|+ |.+|...+..+...|+ +|++++++.++.+. ....|..+. ..+.+.++++ .+++|++|++.|.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~~-~~~~~~~~~~-~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGRE-TAVAAVLDRC-GGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHHH-HHHHHHHHHH-TTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCcccH-HHHHHHHHHc-CCCccEEEECCCC
Confidence 46899997 9999998888888899 89999887654211 000011000 1122222222 2579999999874
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.33 Score=42.03 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+.+|+|+|+|++|..++..+...|++++..++.+
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999889999888888654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.15 Score=46.13 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=78.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|.|+|.|.+|...+...+.. ++ +++ +.++++++.+. .+++|+. +.+ +.+.+. ...+|+|+.|+.
T Consensus 5 ~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~----~~~----~~~~l~---~~~~D~V~i~tp 72 (331)
T 4hkt_A 5 RFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYGCE----VRT----IDAIEA---AADIDAVVICTP 72 (331)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCE----ECC----HHHHHH---CTTCCEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhCCC----cCC----HHHHhc---CCCCCEEEEeCC
Confidence 688999999998877766665 66 555 56777777554 4557764 222 433332 236999999998
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEEEeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
...+...+..++.. |+-+++..+.....-.... .... +++.+.-.+ ..+....+..+.+++++|.+.
T Consensus 73 ~~~h~~~~~~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~iG 142 (331)
T 4hkt_A 73 TDTHADLIERFARA--GKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGF--NRRFDPHFMAVRKAIDDGRIG 142 (331)
T ss_dssp GGGHHHHHHHHHHT--TCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECC--GGGGCHHHHHHHHHHHTTTTC
T ss_pred chhHHHHHHHHHHc--CCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcc--cccCCHHHHHHHHHHHcCCCC
Confidence 87778888888877 4556665542111111000 0111 233332211 233344577888888888663
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.048 Score=47.41 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.+ +++|+|+|++|.+++..+...|+++|++++++.+|.+.+.+ ++. ...++ +.+.+ ..+|+|++++
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~~~----~~~~~-----~~aDiVInat 174 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSLDQ----LDEVV-----KKAKSLFNTT 174 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEGGG----HHHHH-----HTCSEEEECS
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCHHH----HHhhh-----cCCCEEEECC
Confidence 45 89999999999999998889998789999999888665433 221 11111 22222 2589999988
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
..
T Consensus 175 p~ 176 (253)
T 3u62_A 175 SV 176 (253)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.026 Score=49.29 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHh--CCCccEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMT--NGGVDRSV 270 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~--~~~~d~v~ 270 (380)
.++++||+|+ |.+|.+.+......|+ +|+.++++.++.+. ..+..+ .|..+.+ .+.+.+.+.. -+++|+++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~~~~~~Dv~d~~-~v~~~~~~~~~~~g~iD~lv 101 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDIHTVAGDISKPE-TADRIVREGIERFGRIDSLV 101 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTEEEEESCTTSHH-HHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---CceEEEEccCCCHH-HHHHHHHHHHHHCCCCCEEE
Confidence 4688999987 9999998888888899 89999887654321 122111 2332221 1222222221 13799999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.|.
T Consensus 102 ~nAg~ 106 (260)
T 3un1_A 102 NNAGV 106 (260)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99874
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.12 Score=45.63 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=48.8
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChh---HHHHHHh-cCCceEe--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSK---RFEEAKK-FGVTDFV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~---~~~~~~~-lG~~~vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |.+|.+.+......|+ +|+.++++++ ..+.+.+ .+...++ |..+.+ .+.+.+.... -
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDE-DIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHH-HHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 4688999985 5999998888888899 8998888775 2333322 3422222 333221 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|++|++.|.
T Consensus 98 g~iD~lv~~Ag~ 109 (285)
T 2p91_A 98 GSLDIIVHSIAY 109 (285)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.1 Score=46.64 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--------ceEecCCCCCccHHHHHHHHhCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--------TDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--------~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-. ..+ .....| ..+.+.....+
T Consensus 93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~D--~~~~~~~~~~~ 168 (304)
T 3bwc_A 93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRA-TVRVGD--GLAFVRQTPDN 168 (304)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESC--HHHHHHSSCTT
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEECc--HHHHHHhccCC
Confidence 35678999998753 6667777776555599999999998888876321 111 111112 33333322234
Q ss_pred CccEEEEcccC----------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSVECTGN----------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+|+|+-.... .+.+..+.+.|+++ |.+++...
T Consensus 169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~ 211 (304)
T 3bwc_A 169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE 211 (304)
T ss_dssp CEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 79998753311 35678899999997 99887643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.17 Score=44.75 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc---eEecCCCCCccHHHHHHHHhCC
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT---DFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~---~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.+.++.+||-+|+| .|..+..+++..|+ +|++++.++...+.+++ .|.. .++..+-.+ + ....+
T Consensus 79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~-----~~~~~ 149 (297)
T 2o57_A 79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE--I-----PCEDN 149 (297)
T ss_dssp CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS--C-----SSCTT
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc--C-----CCCCC
Confidence 67889999999986 57788888888788 99999999988777765 3321 122111111 0 01123
Q ss_pred CccEEEEcccC------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSVECTGN------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+|+|+....- ...+..+.+.|+|+ |++++...
T Consensus 150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 188 (297)
T 2o57_A 150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 188 (297)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 79999865321 24588899999997 99887753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.067 Score=48.78 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-Hhc----CCceEecCCCCC-ccHHHHHHHHhCCCccE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKF----GVTDFVNTSEHD-RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~l----G~~~vi~~~~~~-~~~~~~~~~~~~~~~d~ 268 (380)
+.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+ +.+ +.. ++..+-.+ ..+.+.++.. .+|+
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~~~~~~~~~---~~d~ 83 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQ-SEIGDIRDQNKLLESIREF---QPEI 83 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSE-EEECCTTCHHHHHHHHHHH---CCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceE-EEEccccCHHHHHHHHHhc---CCCE
Confidence 578999997 9999999988888898 899998876543222 211 222 22222222 1122222222 6899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
||++++.
T Consensus 84 vih~A~~ 90 (357)
T 1rkx_A 84 VFHMAAQ 90 (357)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 9999883
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.11 Score=45.10 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-ChhHHHHHHh----cCCce-Ee--cCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-SSKRFEEAKK----FGVTD-FV--NTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-~~~~~~~~~~----lG~~~-vi--~~~~~~~~~~~~~~~~~~-- 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+.+ +++..+.+++ .+... ++ |..+.+ .+.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKE-DLHKIVEEAMSHF 83 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHH-HHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHH-HHHHHHHHHHHHh
Confidence 3578999997 9999998888888899 7777744 4444444443 22222 22 333221 22232332221
Q ss_pred CCccEEEEccc
Q 016933 264 GGVDRSVECTG 274 (380)
Q Consensus 264 ~~~d~v~d~~g 274 (380)
+++|++|+++|
T Consensus 84 g~id~lv~~Ag 94 (264)
T 3i4f_A 84 GKIDFLINNAG 94 (264)
T ss_dssp SCCCEEECCCC
T ss_pred CCCCEEEECCc
Confidence 37999999998
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.096 Score=47.33 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH----HHHHh-cCCc-eEecCCCCCccHHHHHHHHhC-CCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF----EEAKK-FGVT-DFVNTSEHDRPIQEVIAEMTN-GGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~----~~~~~-lG~~-~vi~~~~~~~~~~~~~~~~~~-~~~ 266 (380)
.+.+|||+|+ |.+|...+..+...|+ +|++++++.++. +.+.+ .+.. .++..+-.+. +.+.++.. .++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 79 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDE---RALARIFDAHPI 79 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCH---HHHHHHHHHSCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCH---HHHHHHHhccCC
Confidence 4578999997 9999999988888899 899988765432 12221 1221 2222222221 12222222 379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+||++++.
T Consensus 80 d~vih~A~~ 88 (341)
T 3enk_A 80 TAAIHFAAL 88 (341)
T ss_dssp CEEEECCCC
T ss_pred cEEEECccc
Confidence 999999874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.047 Score=49.41 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=47.3
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+.+.++..+ ..+-.+ .+.+.+... ++|+||++++.
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~-~~Dl~d---~~~~~~~~~-~~d~vih~a~~ 87 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECR-VAEMLD---HAGLERALR-GLDGVIFSAGY 87 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEE-ECCTTC---HHHHHHHTT-TCSEEEEC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEE-EecCCC---HHHHHHHHc-CCCEEEECCcc
Confidence 47999997 9999999988888898 89999888766544433344332 222222 123444433 59999999874
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.061 Score=48.95 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh----hHHHHHH---hcCCceE-ecCCCCCccHHHHHHHHhCCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS----KRFEEAK---KFGVTDF-VNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~----~~~~~~~---~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~ 266 (380)
..+|||+|+ |.+|...+..+...|. +|++++++. ++.+.++ ..++..+ .|..+. ..+.+.+++ .++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~-~~l~~~~~~---~~~ 84 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ-EAMEKILKE---HEI 84 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCH-HHHHHHHHH---TTC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCH-HHHHHHHhh---CCC
Confidence 357999998 9999999988888898 888888866 5555433 3455433 233221 122222222 279
Q ss_pred cEEEEcccCh--hhHHHHHHHhhcC
Q 016933 267 DRSVECTGNI--DNMISAFECVHDG 289 (380)
Q Consensus 267 d~v~d~~g~~--~~~~~~~~~l~~~ 289 (380)
|+||.+.+.. .....+++.+...
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~~~ 109 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMKAV 109 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHHHHc
Confidence 9999998853 2234555555553
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.13 Score=45.09 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChh---HHHHHHh-cCCceEe--cCCCCCccHHHHHHHHh--C
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSK---RFEEAKK-FGVTDFV--NTSEHDRPIQEVIAEMT--N 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~---~~~~~~~-lG~~~vi--~~~~~~~~~~~~~~~~~--~ 263 (380)
.++++||+|+ |++|.+.+..+...|+ +|+.++++++ ..+.+.+ .+...++ |..+.+ .+.+.+.+.. -
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEE-HFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHH-HHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 4688999985 6999998888888899 8998888765 3333332 3422222 333221 1222222221 1
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 83 g~id~lv~nAg~ 94 (275)
T 2pd4_A 83 GSLDFIVHSVAF 94 (275)
T ss_dssp SCEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999999874
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.067 Score=46.74 Aligned_cols=97 Identities=21% Similarity=0.259 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHc---CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIA---GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~---g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
+++|.+||=+|+| .|..+..+++.. |+ +|++++.+++-++.+++ .+...-+.....+ +.++..+.
T Consensus 68 ~~~~~~vLDlGcG-tG~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D------~~~~~~~~ 139 (261)
T 4gek_A 68 VQPGTQVYDLGCS-LGAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD------IRDIAIEN 139 (261)
T ss_dssp CCTTCEEEEETCT-TTHHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC------TTTCCCCS
T ss_pred CCCCCEEEEEeCC-CCHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc------cccccccc
Confidence 7899999999986 477777888865 56 89999999998887765 3332111111111 11111236
Q ss_pred ccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSVECTGN--------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+|+|+-...- ...+..+.+.|+|+ |++++...
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~ 179 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK 179 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence 8887754321 13578899999997 99987644
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.12 Score=45.89 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-------CCceEecCCCCCccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-------GVTDFVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-------G~~~vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
..++|.|+|+|.+|...++.+. .|. +|++.++++++.+.+.+. ++...-+..+ + ...|
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~--------~-----~~aD 75 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK--------V-----KDCD 75 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT--------G-----GGCS
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH--------H-----cCCC
Confidence 4578999999999987777777 899 999999999998888775 3321111110 1 2589
Q ss_pred EEEEcccChhh
Q 016933 268 RSVECTGNIDN 278 (380)
Q Consensus 268 ~v~d~~g~~~~ 278 (380)
+||+++.....
T Consensus 76 lVieavpe~~~ 86 (293)
T 1zej_A 76 IVMEAVFEDLN 86 (293)
T ss_dssp EEEECCCSCHH
T ss_pred EEEEcCcCCHH
Confidence 99999987543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.2 Score=44.33 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=51.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|... ..+ ..+.+. ..|+||-++..+.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~~~----~~~~~~-----~~Dvvi~~vp~~~ 68 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV---VSS----PADVAE-----KADRIITMLPTSI 68 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE---CSS----HHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee---cCC----HHHHHh-----cCCEEEEeCCCHH
Confidence 58899999999988888777898 8999999999988888776531 111 222222 2688888876545
Q ss_pred hHHHHHH
Q 016933 278 NMISAFE 284 (380)
Q Consensus 278 ~~~~~~~ 284 (380)
.+...+.
T Consensus 69 ~~~~v~~ 75 (296)
T 2gf2_A 69 NAIEAYS 75 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.18 Score=46.03 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=79.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHc--CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIA--GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~--g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-+|.|+|.|.+|...+...+.. ++ +++ +.++++++.+. .+++|+ .++ .+ +.+.+.+ ..+|+|+.|
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~~~~~~~-~~~--~~----~~~ll~~---~~~D~V~i~ 82 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRA-ELIDVCDIDPAALKAAVERTGA-RGH--AS----LTDMLAQ---TDADIVILT 82 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHHCC-EEE--SC----HHHHHHH---CCCSEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHHHHHHHcCC-cee--CC----HHHHhcC---CCCCEEEEC
Confidence 4689999999998777766665 67 544 66777777654 455776 332 22 4444432 369999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-ccccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
+....+.+.+.+++.. |+-+++..+.....-... ..... +++.+ .+.. .+....+..+.+++++|.+.
T Consensus 83 tp~~~h~~~~~~al~~--gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~---~r~~p~~~~~k~~i~~g~iG 154 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEA--GFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQ---NRRNATLQLLKRAMQEKRFG 154 (354)
T ss_dssp SCGGGHHHHHHHHHHT--TCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG---GGGSHHHHHHHHHHHTTTTC
T ss_pred CCcHHHHHHHHHHHHC--CCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEc---ccCCHHHHHHHHHHhcCCCC
Confidence 9887777788888877 556666554211111100 00111 23333 3322 33334577888888888663
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.12 Score=44.72 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=66.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCce--EecCCCCCccHHHHHHHH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTD--FVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~--vi~~~~~~~~~~~~~~~~ 261 (380)
.....++++.+||-+|+| .|..+..+++.. . +|++++.+++..+.+++. |... ++..+..+ + .+
T Consensus 30 ~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--l-----~~ 99 (260)
T 1vl5_A 30 MQIAALKGNEEVLDVATG-GGHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ--M-----PF 99 (260)
T ss_dssp HHHHTCCSCCEEEEETCT-TCHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C--C-----CS
T ss_pred HHHhCCCCCCEEEEEeCC-CCHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh--C-----CC
Confidence 344557788999999987 577777777754 4 999999999888877653 3221 22111111 0 01
Q ss_pred hCCCccEEEEcccC------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGN------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+....- ...+..+.+.|+|+ |++++...
T Consensus 100 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~ 141 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN 141 (260)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence 12479999876432 25688899999997 99987643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.067 Score=47.77 Aligned_cols=69 Identities=23% Similarity=0.165 Sum_probs=46.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|||+|+ |.+|...+..+...|. +|+++++++.+.+ ++ +...+ .. |-. .+.+.+... ++|+||++++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~~~-~~---Dl~-~~~~~~~~~-~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYEYR-VS---DYT-LEDLINQLN-DVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCEEE-EC---CCC-HHHHHHHTT-TCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceEEE-Ec---ccc-HHHHHHhhc-CCCEEEEcccc
Confidence 57999997 9999999999988999 8999988865555 43 44322 11 112 344555544 79999999874
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.1 Score=43.22 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=42.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++||+|+ |.+|...+..+. .|+ +|++++++.+ ....|..+.+ .+.+.+... +++|++|++.|
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~~~-~~~~~~~~~--~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITNID-SIKKMYEQV--GKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTCHH-HHHHHHHHH--CCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCCHH-HHHHHHHHh--CCCCEEEECCC
Confidence 7999997 999999888877 898 8998888754 1223333321 233333333 46899999987
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=45.35 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=50.5
Q ss_pred CCCeEEEEcC---CHHHHHHHHHHHHcCCcEEEEEcCChhH--HHHHHhcCCce-E--ecCCCCC--ccHHHHHHHHhC-
Q 016933 195 RGSSVAVFGL---GAVGLAAAEGARIAGASRIIGVDRSSKR--FEEAKKFGVTD-F--VNTSEHD--RPIQEVIAEMTN- 263 (380)
Q Consensus 195 ~g~~vlI~G~---g~~G~~ai~la~~~g~~~vi~~~~~~~~--~~~~~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~- 263 (380)
.++++||+|+ |++|.+.+......|+ +|+.+++++++ .+..++++... . .|..+.+ ..+.+.+.+..+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 84 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA 84 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4688999984 8999998888888899 89888888765 23334454321 2 2333321 112233333333
Q ss_pred -CCccEEEEcccC
Q 016933 264 -GGVDRSVECTGN 275 (380)
Q Consensus 264 -~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 85 ~~~iD~lv~nAg~ 97 (269)
T 2h7i_A 85 GNKLDGVVHSIGF 97 (269)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCceEEEECCcc
Confidence 169999999873
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.16 Score=44.97 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcC-CcEEEEEcCChhHH--HHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAG-ASRIIGVDRSSKRF--EEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g-~~~vi~~~~~~~~~--~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
.++|||+|+ |.+|...+..+...| + +|+++++++++. +.+...|+..+ .|..+. +.+.+... ++|+||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~-----~~l~~~~~-~~d~vi 77 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQ-----VIMELALN-GAYATF 77 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTCH-----HHHHHHHT-TCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCCH-----HHHHHHHh-cCCEEE
Confidence 468999998 999999888877778 7 899998887653 33344565433 233221 23333333 589999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
.+.+.
T Consensus 78 ~~a~~ 82 (299)
T 2wm3_A 78 IVTNY 82 (299)
T ss_dssp ECCCH
T ss_pred EeCCC
Confidence 99874
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.24 Score=47.46 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-------HHHHHhcCCce-EecCCCCC-ccHHHHHHHH
Q 016933 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-------FEEAKKFGVTD-FVNTSEHD-RPIQEVIAEM 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-------~~~~~~lG~~~-vi~~~~~~-~~~~~~~~~~ 261 (380)
.++++.++||+|+ |.+|...+..+...|+.+|+.++++... .+.+++.|... ++..+-.+ ..+.+.+...
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 3578899999987 9999988877777798668888887641 12344556543 22222222 1233333333
Q ss_pred hC-CCccEEEEcccC
Q 016933 262 TN-GGVDRSVECTGN 275 (380)
Q Consensus 262 ~~-~~~d~v~d~~g~ 275 (380)
.. +.+|.||++.|.
T Consensus 302 ~~~g~ld~VIh~AG~ 316 (486)
T 2fr1_A 302 GDDVPLSAVFHAAAT 316 (486)
T ss_dssp CTTSCEEEEEECCCC
T ss_pred HhcCCCcEEEECCcc
Confidence 11 268999999884
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.18 Score=43.92 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=52.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|.|+|+|.+|...+..+...|.+.|.+.++++++.+.+.+ +|....-+..+ .. ...|+|+.++..
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~-~~~Dvvi~av~~ 78 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAE-----------VN-PYAKLYIVSLKD 78 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGG-----------SC-SCCSEEEECCCH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHH-----------Hh-cCCCEEEEecCH
Confidence 469999999999988887777798448889999888877655 47532211111 11 258999999987
Q ss_pred hhhHHHHHHHhh
Q 016933 276 IDNMISAFECVH 287 (380)
Q Consensus 276 ~~~~~~~~~~l~ 287 (380)
. .....++.+.
T Consensus 79 ~-~~~~v~~~l~ 89 (266)
T 3d1l_A 79 S-AFAELLQGIV 89 (266)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 4 3355555443
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.034 Score=47.20 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=43.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
.++++||+|+ +++|.+.+......|+ +|+.++++.+ .|..+.+ .+.+.++++ +++|+++++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~~~-~v~~~~~~~--g~id~lv~nA 67 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISDEK-SVYHYFETI--GAFDHLIVTA 67 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTCHH-HHHHHHHHH--CSEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCCHH-HHHHHHHHh--CCCCEEEECC
Confidence 4678999997 9999998888777798 8888877654 2222211 133333333 4688998888
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 68 g~ 69 (223)
T 3uce_A 68 GS 69 (223)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.071 Score=47.10 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=34.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|+|.+|...+..+.. |. +|+++++++++.+.+.+.|.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~ 44 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFG 44 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHC
T ss_pred eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCC
Confidence 58899999999987776666 98 79999999988887776554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.15 Score=46.52 Aligned_cols=133 Identities=16% Similarity=0.238 Sum_probs=79.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHc-CCcEEE-EEcCChhHHHHH-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIA-GASRII-GVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~-g~~~vi-~~~~~~~~~~~~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-+|.|+|.|.+|...+...+.. ++ +++ +.++++++.+.+ +++|+.. +.+ +.+.+. ...+|+|+.|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~lvav~d~~~~~~~~~~~~~g~~~---~~~----~~~~l~---~~~~D~V~i~t 74 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKL-KLVTCYSRTEDKREKFGKRYNCAG---DAT----MEALLA---REDVEMVIITV 74 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSE-EEEEEECSSHHHHHHHHHHHTCCC---CSS----HHHHHH---CSSCCEEEECS
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCCC---cCC----HHHHhc---CCCCCEEEEeC
Confidence 3689999999998877766655 66 554 557777776544 5577643 222 433332 23799999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
....+...+..++.. |+-+++..+.....-.... .... +++.+ .+. ..+....+..+.+++++|.+.
T Consensus 75 p~~~h~~~~~~al~~--gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~---~~R~~p~~~~~k~~i~~g~iG 145 (354)
T 3db2_A 75 PNDKHAEVIEQCARS--GKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGH---SSRRLGALRKMKEMIDTKEIG 145 (354)
T ss_dssp CTTSHHHHHHHHHHT--TCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEEC---GGGGSHHHHHHHHHHHTTTTC
T ss_pred ChHHHHHHHHHHHHc--CCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEee---chhcCHHHHHHHHHHhcCCCC
Confidence 987778888888887 4556665442111111000 0111 22323 222 233345677888888888663
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.33 Score=44.45 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=58.5
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGL-AAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~-~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
-+|.|+|.|.++. ..+...+.-+++-+.+.++++++.+ +++++|...++. + +.+.+. ...+|+|+.++.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~--~----~~~ll~---~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIA--T----AEEILE---DENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEES--C----HHHHHT---CTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccC--C----HHHHhc---CCCCCEEEEeCC
Confidence 4689999876664 3344445578844455567777654 455677433331 1 333221 237999999998
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
...+.+.+..++.. |+-|++..+
T Consensus 98 ~~~H~~~~~~al~a--GkhVl~EKP 120 (361)
T 3u3x_A 98 SSERAELAIRAMQH--GKDVLVDKP 120 (361)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEESC
T ss_pred hHHHHHHHHHHHHC--CCeEEEeCC
Confidence 87778888888887 566777554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.04 Score=49.15 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=38.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT 242 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~ 242 (380)
.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 60 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGAT 60 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCE
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCE
Confidence 479999999999988888877898 899999999998888887753
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.089 Score=44.63 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=64.7
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHHhCCC
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
..++++++||=+|+|..|..++.+++..+. +|++++.+++..+.+++ .|.. .++..+... ...+..+.
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~------~~~~~~~~ 123 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGI------IKGVVEGT 123 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCS------STTTCCSC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchh------hhhcccCc
Confidence 346788999999988678888888887666 99999999998887765 3431 222222100 01112247
Q ss_pred ccEEEEccc----------------------C---hhhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSVECTG----------------------N---IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~d~~g----------------------~---~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+|+-.-. . ...+..+.+.|+++ |+++++
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 178 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY 178 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 999984311 0 24577778888996 888775
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.05 Score=46.24 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eEecCCCCCccHHHHHHHHh-CCCccEEE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DFVNTSEHDRPIQEVIAEMT-NGGVDRSV 270 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~vi~~~~~~~~~~~~~~~~~-~~~~d~v~ 270 (380)
++++.+||=+|+|. |..+..+++. |+ +|++++.++...+.+++.... .++..+-.+ .+ ... .+.+|+|+
T Consensus 46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~-~~-----~~~~~~~fD~v~ 116 (226)
T 3m33_A 46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGKG-EL-----PAGLGAPFGLIV 116 (226)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSCS-SC-----CTTCCCCEEEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchhh-cc-----CCcCCCCEEEEE
Confidence 36788999998763 6677777776 77 999999999999998876321 222211101 00 011 34799999
Q ss_pred EcccChhhHHHHHHHhhcCCcEEEEEc
Q 016933 271 ECTGNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
........+..+.+.|+|+ |+++..+
T Consensus 117 ~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 142 (226)
T 3m33_A 117 SRRGPTSVILRLPELAAPD-AHFLYVG 142 (226)
T ss_dssp EESCCSGGGGGHHHHEEEE-EEEEEEE
T ss_pred eCCCHHHHHHHHHHHcCCC-cEEEEeC
Confidence 8766667889999999997 9998443
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.064 Score=46.98 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred hcchhhhhhhhhhhhccCCCCCCeEEEEcCC-HHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHhcCCceEecCCCCC
Q 016933 175 ILSCGVSTGLGATLNVAKPERGSSVAVFGLG-AVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD 251 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g-~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~ 251 (380)
.+||....++..+.+..---.|++++|+|.| .+|..+++++... |+ +|++..+.. .+
T Consensus 137 ~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t-------------------~~ 196 (281)
T 2c2x_A 137 PLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT-------------------RD 196 (281)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC-------------------SC
T ss_pred CCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch-------------------hH
Confidence 3455444444443332223478999999997 5699999999888 77 777764332 11
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+.+ ..+|++|.++|.+..+.. +.++++ ..++.+|..
T Consensus 197 --L~~~~-----~~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~ 234 (281)
T 2c2x_A 197 --LPALT-----RQADIVVAAVGVAHLLTA--DMVRPG-AAVIDVGVS 234 (281)
T ss_dssp --HHHHH-----TTCSEEEECSCCTTCBCG--GGSCTT-CEEEECCEE
T ss_pred --HHHHH-----hhCCEEEECCCCCcccCH--HHcCCC-cEEEEccCC
Confidence 32322 248999999998765332 336775 777777765
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.18 Score=48.77 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCCh-----------------hHHHHHHhcCCceE-ecCCCCC
Q 016933 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSS-----------------KRFEEAKKFGVTDF-VNTSEHD 251 (380)
Q Consensus 192 ~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~-----------------~~~~~~~~lG~~~v-i~~~~~~ 251 (380)
.+++++++||+|+ |++|...+......|+.+++.+ +++. +..+.+++.|.... +..+-.+
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 3577899999987 9999988877777798667777 7762 12333445676432 2222222
Q ss_pred -ccHHHHHHHHhC-CCccEEEEcccC
Q 016933 252 -RPIQEVIAEMTN-GGVDRSVECTGN 275 (380)
Q Consensus 252 -~~~~~~~~~~~~-~~~d~v~d~~g~ 275 (380)
..+.+.+..... +++|++|++.|.
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~AGv 352 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLPPT 352 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence 123333333322 379999999884
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.31 Score=44.42 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH--HHHHhc-CCceEecCC-CCCccHHHHHHHHhCCCccEEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF--EEAKKF-GVTDFVNTS-EHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~--~~~~~l-G~~~vi~~~-~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
+.+|||+|+ |.+|...+..+...|+ +|++++++.++. +.+.+. ++. ++..+ -.+. +.+.+... ++|+||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~-~v~~D~l~d~---~~l~~~~~-~~d~Vi 78 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVT-LFQGPLLNNV---PLMDTLFE-GAHLAF 78 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEE-EEESCCTTCH---HHHHHHHT-TCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcE-EEECCccCCH---HHHHHHHh-cCCEEE
Confidence 467999997 9999998888877898 888888877654 333332 332 22222 1221 22333333 589999
Q ss_pred EcccCh-----hhHHHHHHHhhcC--CcEEEEEcCC
Q 016933 271 ECTGNI-----DNMISAFECVHDG--WGVAVLVGVP 299 (380)
Q Consensus 271 d~~g~~-----~~~~~~~~~l~~~--~G~~v~~g~~ 299 (380)
.+.+.. .....+++.+... .++++.++..
T Consensus 79 ~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 79 INTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp ECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred EcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 877542 1123444444443 1588887654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.23 Score=45.16 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=77.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|.|+|+|.+|...+...+.. ++ +++ +.++++++.+. ++++|+. ++ .+ +.+.+. ...+|+|+.|+.
T Consensus 6 rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~-~~--~~----~~~~l~---~~~~D~V~i~tp 74 (344)
T 3euw_A 6 RIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANGAE-AV--AS----PDEVFA---RDDIDGIVIGSP 74 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTTCE-EE--SS----HHHHTT---CSCCCEEEECSC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCc-ee--CC----HHHHhc---CCCCCEEEEeCC
Confidence 689999999998877776665 66 555 56777777554 4557743 32 11 322221 137999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
...+...+..++.. |+-+++..+.....-.... .... +++.+ .+. ..+....+..+.+++++|.+.
T Consensus 75 ~~~h~~~~~~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~---~~r~~p~~~~~k~~i~~g~iG 144 (344)
T 3euw_A 75 TSTHVDLITRAVER--GIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGF---NRRFDPSFAAINARVANQEIG 144 (344)
T ss_dssp GGGHHHHHHHHHHT--TCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECC---GGGGCHHHHHHHHHHHTTTTS
T ss_pred chhhHHHHHHHHHc--CCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecc---hhhcCHHHHHHHHHHhcCCCC
Confidence 87778888888877 4556665442111111000 0111 22222 222 233344577888888888663
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.18 Score=43.91 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEE-EcCChhHHHHH----HhcCCce-EecCCCCC-ccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIG-VDRSSKRFEEA----KKFGVTD-FVNTSEHD-RPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~-~~~~~~~~~~~----~~lG~~~-vi~~~~~~-~~~~~~~~~~~--~~ 264 (380)
.++++||+|+ |++|.+.+......|+ +|++ ..++.++.+.+ ++.+... ++..+-.+ ..+.+.+.+.. .+
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 103 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG 103 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3578999987 9999998888888999 6644 55665544332 2333322 22222222 11222222221 13
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 104 ~id~li~nAg~ 114 (267)
T 4iiu_A 104 AWYGVVSNAGI 114 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CccEEEECCCC
Confidence 79999999874
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.24 Score=45.03 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=52.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH-HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR-FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~-~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+.+|.|+|.|.+|.+.++.++..|. +|++.++++++ .+.+++.|... . + ..+.++ ..|+|+-++.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~~-~---~----~~e~~~-----~aDvVilavp 81 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLKV-A---D----VKTAVA-----AADVVMILTP 81 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCEE-E---C----HHHHHH-----TCSEEEECSC
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCEE-c---c----HHHHHh-----cCCEEEEeCC
Confidence 3579999999999999998888998 78888887655 67778888742 1 1 322222 4799999987
Q ss_pred ChhhHHHHHH
Q 016933 275 NIDNMISAFE 284 (380)
Q Consensus 275 ~~~~~~~~~~ 284 (380)
.. .....++
T Consensus 82 ~~-~~~~v~~ 90 (338)
T 1np3_A 82 DE-FQGRLYK 90 (338)
T ss_dssp HH-HHHHHHH
T ss_pred cH-HHHHHHH
Confidence 63 3344444
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.074 Score=48.25 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=45.3
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
.++++|||+|+ |.+|...+..+...|+ +|++++++.++ .+...+ .|..+. +.+.+... ++|+||+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------~~~~~~~~Dl~d~-----~~~~~~~~-~~d~vih 83 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG------TGGEEVVGSLEDG-----QALSDAIM-GVSAVLH 83 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS------SCCSEEESCTTCH-----HHHHHHHT-TCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC------CCccEEecCcCCH-----HHHHHHHh-CCCEEEE
Confidence 45678999998 9999999999988998 89998887765 233322 222221 22333333 6999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.+.
T Consensus 84 ~A~~ 87 (347)
T 4id9_A 84 LGAF 87 (347)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8864
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=45.56 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc------CC--ceEecCCCCCccHHHHHHHHhCCCc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF------GV--TDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l------G~--~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
.+++||++|+|. |..+..+++..+..+|++++.+++-.+.+++. +. ..+- ....| ..+.+.. ..+.+
T Consensus 75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~-v~~~D--~~~~l~~-~~~~f 149 (275)
T 1iy9_A 75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVD-VQVDD--GFMHIAK-SENQY 149 (275)
T ss_dssp SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEE-EEESC--SHHHHHT-CCSCE
T ss_pred CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceE-EEECc--HHHHHhh-CCCCe
Confidence 468999998753 66677777766766999999999988888763 11 1110 01111 2222332 23479
Q ss_pred cEEEEcccC----------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 267 DRSVECTGN----------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 267 d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
|+|+--... .+.+..+.+.|+++ |.++...
T Consensus 150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~ 189 (275)
T 1iy9_A 150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (275)
T ss_dssp EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence 998753321 36788999999997 9988763
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.19 Score=44.73 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=54.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec-------CCCCCccHHHHHHHHhC--CCcc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN-------TSEHDRPIQEVIAEMTN--GGVD 267 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~-------~~~~~~~~~~~~~~~~~--~~~d 267 (380)
.+|+|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|...... ....+ . .+... ..+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~d 76 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFS--P----EEIDHQNEQVD 76 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEEC--G----GGCCTTSCCCS
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeec--c----hhhcccCCCCC
Confidence 369999999999998887777898 8999999999988888777432110 00000 0 00111 1589
Q ss_pred EEEEcccChhhHHHHHHHhh
Q 016933 268 RSVECTGNIDNMISAFECVH 287 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~ 287 (380)
+||-|+.. ..+...++.+.
T Consensus 77 ~vi~~v~~-~~~~~v~~~l~ 95 (316)
T 2ew2_A 77 LIIALTKA-QQLDAMFKAIQ 95 (316)
T ss_dssp EEEECSCH-HHHHHHHHHHG
T ss_pred EEEEEecc-ccHHHHHHHHH
Confidence 99999986 44455555443
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.29 Score=46.90 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=52.4
Q ss_pred CCCC--CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-------HHHHHHhcCCceE-ecCCCCC-ccHHHHHHH
Q 016933 193 PERG--SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-------RFEEAKKFGVTDF-VNTSEHD-RPIQEVIAE 260 (380)
Q Consensus 193 ~~~g--~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-------~~~~~~~lG~~~v-i~~~~~~-~~~~~~~~~ 260 (380)
++++ +++||+|+ |++|...+......|+.+|+.+.++.. -.+.+++.|.... +..+-.+ ..+.+.+.+
T Consensus 234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~ 313 (496)
T 3mje_A 234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE 313 (496)
T ss_dssp CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 3455 89999987 999999887777789878888877632 2234455676432 2222222 123333433
Q ss_pred HhC-CCccEEEEcccC
Q 016933 261 MTN-GGVDRSVECTGN 275 (380)
Q Consensus 261 ~~~-~~~d~v~d~~g~ 275 (380)
... +++|++|++.|.
T Consensus 314 i~~~g~ld~vVh~AGv 329 (496)
T 3mje_A 314 LPEDAPLTAVFHSAGV 329 (496)
T ss_dssp CCTTSCEEEEEECCCC
T ss_pred HHHhCCCeEEEECCcc
Confidence 322 379999999885
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.12 Score=43.66 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-----------eEecCCCCCccHHHHHHHH
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-----------DFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-----------~vi~~~~~~~~~~~~~~~~ 261 (380)
++++++||-+|+|. |..+..+++. |+ +|++++.++...+.+++.... .++..+... + ..
T Consensus 28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~-----~~ 97 (235)
T 3sm3_A 28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS--L-----SF 97 (235)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS--C-----CS
T ss_pred CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc--c-----CC
Confidence 56788999999864 7777777776 77 999999999998888873221 122111111 0 01
Q ss_pred hCCCccEEEEccc-----Ch----hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTG-----NI----DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g-----~~----~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|+|+-... .+ ..+..+.+.|+++ |++++...
T Consensus 98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 142 (235)
T 3sm3_A 98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEF 142 (235)
T ss_dssp CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence 1237999885321 21 4678889999997 99987754
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.024 Score=49.74 Aligned_cols=75 Identities=25% Similarity=0.300 Sum_probs=47.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC--ccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD--RPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~--~~~~~~~~~~~~~~~d~v~d 271 (380)
.|+++||+|+ |++|.+.+......|+ +|+.++++.++.+....+ ..|..+.+ ..+.+.+.+.. +++|++++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~~~~~~~~~~~~~~~~-g~iD~lvn 100 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLREAAYADGLPGAVAAGL-GRLDIVVN 100 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTSHHHHHHHHHHHHHHH-SCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCCHHHHHHHHHHHHHhc-CCCCEEEE
Confidence 4689999987 9999998888888899 899998876543221111 11222211 11222222222 37999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+.|.
T Consensus 101 nAg~ 104 (266)
T 3uxy_A 101 NAGV 104 (266)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9884
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.24 Score=41.15 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=61.4
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-CC---------------c--eEe--cCCC
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-GV---------------T--DFV--NTSE 249 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-G~---------------~--~vi--~~~~ 249 (380)
...+.++.+||-+|+|. |..+..+|+. |+ +|++++.+++-++.+++. +. . .++ |..+
T Consensus 17 ~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 17 SLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred hcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 34567889999998763 6677788875 88 999999999998888763 21 1 111 1111
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEE
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+ +.+ .+.||+|++...- ...+..+.+.|+|+ |+++++
T Consensus 94 l~--~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~ 139 (203)
T 1pjz_A 94 LT--ARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI 139 (203)
T ss_dssp ST--HHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred CC--ccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 11 110 1369999974221 12467888999997 984433
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.13 Score=46.09 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC------C--ceEecCCCCCccHHHHHHHHhCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG------V--TDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG------~--~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.- . ..+ .....| ..+.+.. ..+
T Consensus 93 ~~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv-~v~~~D--a~~~l~~-~~~ 167 (304)
T 2o07_A 93 HPNPRKVLIIGGG-DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-TLHVGD--GFEFMKQ-NQD 167 (304)
T ss_dssp SSSCCEEEEEECT-TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEESC--HHHHHHT-CSS
T ss_pred CCCCCEEEEECCC-chHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEECc--HHHHHhh-CCC
Confidence 3456899999875 3666777777655459999999999888887631 1 111 111122 3333332 234
Q ss_pred CccEEE-Eccc---------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSV-ECTG---------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.||+|+ |... ..+.+..+.++|+++ |.+++..
T Consensus 168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~ 209 (304)
T 2o07_A 168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG 209 (304)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence 799987 4332 124688999999997 9988654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.073 Score=47.11 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--------ceEecCCCCCccHHHHHHHHhCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--------TDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--------~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
..++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-. ..+ .....| ..+.+... .+
T Consensus 76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~D--~~~~l~~~-~~ 150 (283)
T 2i7c_A 76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-NVFIED--ASKFLENV-TN 150 (283)
T ss_dssp SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-EEEESC--HHHHHHHC-CS
T ss_pred CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcE-EEEECC--hHHHHHhC-CC
Confidence 34568999998753 5566677776554599999999999998887311 111 111112 33333332 44
Q ss_pred CccEEEE-ccc---C------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSVE-CTG---N------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~d-~~g---~------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+|+|+- ... . .+.+..+.++|+++ |.+++...
T Consensus 151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~~ 193 (283)
T 2i7c_A 151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQCE 193 (283)
T ss_dssp CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEECC
Confidence 7999875 221 1 35678899999997 99987643
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.21 Score=49.18 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=51.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh---------hHHH----HHHhcCCceEecCCCCC--ccHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS---------KRFE----EAKKFGVTDFVNTSEHD--RPIQEVI 258 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~---------~~~~----~~~~lG~~~vi~~~~~~--~~~~~~~ 258 (380)
.|+++||+|+ +++|.+.+......|+ +|++.+++. ++.+ .+++.|...+.|..+.. ..+.+.+
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~ 85 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA 85 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 4678999997 8999999888888999 888887643 3332 23344655555555432 1233333
Q ss_pred HHHhCCCccEEEEcccC
Q 016933 259 AEMTNGGVDRSVECTGN 275 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~ 275 (380)
.+.. +.+|+++++.|.
T Consensus 86 ~~~~-G~iDiLVnNAGi 101 (604)
T 2et6_A 86 VKNF-GTVHVIINNAGI 101 (604)
T ss_dssp HHHH-SCCCEEEECCCC
T ss_pred HHHc-CCCCEEEECCCC
Confidence 3333 479999999884
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.076 Score=47.57 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=46.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
-++..+|||+|+ |.+|...+..+...|+ +|++++++.++ +. ++...+ .|..+. ..+.+.++. +.+|+||
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~d~-~~~~~~~~~---~~~d~vi 79 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIMDS-QRVKKVISD---IKPDYIF 79 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTTCH-HHHHHHHHH---HCCSEEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCCCH-HHHHHHHHh---cCCCEEE
Confidence 356678999997 9999999988888898 89999887664 21 233222 222221 112222222 2689999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++++.
T Consensus 80 h~A~~ 84 (321)
T 2pk3_A 80 HLAAK 84 (321)
T ss_dssp ECCSC
T ss_pred EcCcc
Confidence 99874
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.69 Score=39.70 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH--------------HHH-HHhcCCceEecCCCCCccHHHHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR--------------FEE-AKKFGVTDFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~--------------~~~-~~~lG~~~vi~~~~~~~~~~~~~~ 259 (380)
.+.+|.|+|+|.+|.+.+..+...|. +|++.++++++ .+. ..++|....- ...+.++
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~ 89 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLA-------AFADVAA 89 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEE-------EHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceecc-------CHHHHHh
Confidence 35789999999999999888888898 89999999887 332 2334432221 1333332
Q ss_pred HHhCCCccEEEEcccChhhHHHH----HHHhhcCCcEEEEEc
Q 016933 260 EMTNGGVDRSVECTGNIDNMISA----FECVHDGWGVAVLVG 297 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~~~~----~~~l~~~~G~~v~~g 297 (380)
..|+||-++........+ ...+ ++ ..++.+.
T Consensus 90 -----~aDvVilavp~~~~~~~~~~i~~~~l-~g-~ivi~~s 124 (245)
T 3dtt_A 90 -----GAELVVNATEGASSIAALTAAGAENL-AG-KILVDIA 124 (245)
T ss_dssp -----HCSEEEECSCGGGHHHHHHHHCHHHH-TT-SEEEECC
T ss_pred -----cCCEEEEccCcHHHHHHHHHhhhhhc-CC-CEEEECC
Confidence 379999999874433322 2233 54 5565555
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.026 Score=49.80 Aligned_cols=70 Identities=13% Similarity=0.170 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+++++|+|+|++|.+++..+...|+++|++++++.++.+.+.+ .. .... +. .+.+.. ..+|+||++++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~-~~~~-------~~-~~~~~~-~~aDiVInaTp 184 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NI-NKIN-------LS-HAESHL-DEFDIIINTTP 184 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CC-EEEC-------HH-HHHHTG-GGCSEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hc-cccc-------Hh-hHHHHh-cCCCEEEECcc
Confidence 57889999999999999998888998789999999887554332 11 1111 22 233321 25899999986
Q ss_pred C
Q 016933 275 N 275 (380)
Q Consensus 275 ~ 275 (380)
.
T Consensus 185 ~ 185 (277)
T 3don_A 185 A 185 (277)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.095 Score=46.49 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
.|++|.|+|.|.+|...++.++.+|. +|++.+++.++
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 157 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVD 157 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCC
T ss_pred ecchheeeccCchhHHHHHHHHhhCc-EEEEEeccccc
Confidence 47899999999999999999999999 99999887654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.2 Score=43.67 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=68.6
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCc---eEecCCCCCccHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVT---DFVNTSEHDRPIQEVIA 259 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~---~vi~~~~~~~~~~~~~~ 259 (380)
+.....++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++. |.. .++..+-.+ +
T Consensus 53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~----- 123 (273)
T 3bus_A 53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD--L----- 123 (273)
T ss_dssp HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS--C-----
T ss_pred HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc--C-----
Confidence 34556788999999999864 7788888888887 999999999888777653 321 122211111 0
Q ss_pred HHhCCCccEEEEccc------ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 260 EMTNGGVDRSVECTG------NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
....+.+|+|+.... ....+..+.+.|+|+ |++++...
T Consensus 124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 167 (273)
T 3bus_A 124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF 167 (273)
T ss_dssp CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 011237999975321 124577888999997 99887653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.19 Score=46.43 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=78.0
Q ss_pred eEEEEcCCHHHHHHHHHHHH--------cCCcEEEEE-cCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCCCcc
Q 016933 198 SVAVFGLGAVGLAAAEGARI--------AGASRIIGV-DRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~--------~g~~~vi~~-~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
+|.|+|+|.+|...+...+. -++ +++++ ++++++. +.++++|...++. + +.+.+. ...+|
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y~--d----~~ell~---~~~iD 96 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERP-RLVHLAEANAGLAEARAGEFGFEKATA--D----WRALIA---DPEVD 96 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCC-EEEEEECC--TTHHHHHHHHTCSEEES--C----HHHHHH---CTTCC
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCc-EEEEEECCCHHHHHHHHHHhCCCeecC--C----HHHHhc---CCCCc
Confidence 68999999999765443322 145 55544 5666655 4556688866542 2 444332 23799
Q ss_pred EEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccc-cccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCC
Q 016933 268 RSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKP-INVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~ 343 (380)
+|+-|+....+.+.+.+++.. |+-|++..+.....-+... .... +++.+ .+. ..+....+..+-+++++|.
T Consensus 97 aV~IatP~~~H~~~a~~al~a--GkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~---~~R~~p~~~~~k~~i~~G~ 171 (393)
T 4fb5_A 97 VVSVTTPNQFHAEMAIAALEA--GKHVWCEKPMAPAYADAERMLATAERSGKVAALGY---NYIQNPVMRHIRKLVGDGV 171 (393)
T ss_dssp EEEECSCGGGHHHHHHHHHHT--TCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECC---GGGGCHHHHHHHHHHHTTT
T ss_pred EEEECCChHHHHHHHHHHHhc--CCeEEEccCCcccHHHHHHhhhhHHhcCCcccccc---ccccChHHHHHHHHHHcCC
Confidence 999999987888899998887 6777786653211111100 0111 22322 222 2333456788888888886
Q ss_pred CC
Q 016933 344 LE 345 (380)
Q Consensus 344 ~~ 345 (380)
+.
T Consensus 172 iG 173 (393)
T 4fb5_A 172 IG 173 (393)
T ss_dssp TC
T ss_pred Cc
Confidence 64
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.16 Score=45.00 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC------hhHHHHHH---hcCCceE-ecCCCCCccHHHHHHHHhCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS------SKRFEEAK---KFGVTDF-VNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~------~~~~~~~~---~lG~~~v-i~~~~~~~~~~~~~~~~~~~ 264 (380)
..+|||+|+ |.+|...+..+...|. +|++++++ +++.+.++ ..|+..+ .|..+. +.+.+...
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~-----~~l~~~~~- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDH-----ASLVEAVK- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCH-----HHHHHHHH-
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCH-----HHHHHHHc-
Confidence 357999998 9999999988888898 88888886 33443333 3455432 232221 22333322
Q ss_pred CccEEEEcccChh--hHHHHHHHhhcC--CcEEE
Q 016933 265 GVDRSVECTGNID--NMISAFECVHDG--WGVAV 294 (380)
Q Consensus 265 ~~d~v~d~~g~~~--~~~~~~~~l~~~--~G~~v 294 (380)
++|+||++++... ....+++.+... ..+++
T Consensus 77 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (308)
T 1qyc_A 77 NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFF 110 (308)
T ss_dssp TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence 5899999987532 223444444432 14665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.1 Score=45.08 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=67.8
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc---eEecCCCCCccHHHHHHHHh
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT---DFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~---~vi~~~~~~~~~~~~~~~~~ 262 (380)
...++++++||-+|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++..+-.+ + ...
T Consensus 41 l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~-----~~~ 111 (257)
T 3f4k_A 41 INELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN--L-----PFQ 111 (257)
T ss_dssp SCCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS--C-----SSC
T ss_pred HhcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh--C-----CCC
Confidence 34678899999999874 8888999998887 99999999988887765 3432 122211111 1 011
Q ss_pred CCCccEEEEc-----ccChhhHHHHHHHhhcCCcEEEEEc
Q 016933 263 NGGVDRSVEC-----TGNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 263 ~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+.+|+|+.. .+....+..+.+.|+|+ |++++..
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~ 150 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE 150 (257)
T ss_dssp TTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 2479999753 22335688889999997 9988775
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.055 Score=47.04 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC--------------------ceEecCCCCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV--------------------TDFVNTSEHD 251 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~--------------------~~vi~~~~~~ 251 (380)
..++.+||.+|+|. |..+..+|+. |+ +|++++.++.-++.+++ .+. ..+ .+...|
T Consensus 66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~D 141 (252)
T 2gb4_A 66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYCCS 141 (252)
T ss_dssp TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEESC
T ss_pred CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEECc
Confidence 46788999998763 7777788875 88 99999999999988865 321 011 010111
Q ss_pred ccHHHHHHHHhC-CCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 252 RPIQEVIAEMTN-GGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 252 ~~~~~~~~~~~~-~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+.+ +. ... +.||+|++...- ...+..+.+.|+|+ |+++++.
T Consensus 142 --~~~-l~-~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~ 191 (252)
T 2gb4_A 142 --IFD-LP-RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV 191 (252)
T ss_dssp --TTT-GG-GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred --ccc-CC-cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence 100 10 111 479999975321 13567788999997 9986543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.089 Score=43.88 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc----eEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT----DFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~----~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
+.++.+||-+|+|. |..+..+++. |..++++++.++...+.+++.... .++..+..+ + ....+.+|+
T Consensus 40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~--~-----~~~~~~fD~ 110 (215)
T 2pxx_A 40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK--L-----DFPSASFDV 110 (215)
T ss_dssp CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS--C-----CSCSSCEEE
T ss_pred cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc--C-----CCCCCcccE
Confidence 47788999999865 7777777775 444899999999999988874321 122211111 0 112247999
Q ss_pred EEEccc---------------------ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 269 SVECTG---------------------NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 269 v~d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
|+.... ....+..+.+.|+++ |++++....
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~ 161 (215)
T 2pxx_A 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTSA 161 (215)
T ss_dssp EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEESC
T ss_pred EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeCC
Confidence 986311 135677888999997 999887654
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.07 Score=46.20 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=47.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhH----HHHHHhcCCce-Ee--cCCCCC--ccHHHHHHHH
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKR----FEEAKKFGVTD-FV--NTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~----~~~~~~lG~~~-vi--~~~~~~--~~~~~~~~~~ 261 (380)
..+++++||+|+ |++|.+.+......|+ +|+.++ ++.++ .+.+++.+.+. ++ |..+.+ ..+.+.+.+.
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 356789999987 9999998888888899 777765 44333 23333445432 22 222211 1122223332
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 89 ~-g~id~lv~~Ag~ 101 (256)
T 3ezl_A 89 V-GEIDVLVNNAGI 101 (256)
T ss_dssp T-CCEEEEEECCCC
T ss_pred c-CCCCEEEECCCC
Confidence 2 379999999884
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.12 Score=47.24 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=47.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHH--cCCcEEEEEcCChhHH-------------HHHHhcCCceEecCCCCCccHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARI--AGASRIIGVDRSSKRF-------------EEAKKFGVTDFVNTSEHDRPIQEVI 258 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~--~g~~~vi~~~~~~~~~-------------~~~~~lG~~~vi~~~~~~~~~~~~~ 258 (380)
.+.+|||+|+ |.+|...+..+.. .|+ +|++++++.... ..+...+. .++..+-.+. +.+
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~---~~~ 83 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG-EVIAADINNP---LDL 83 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-------CCCCCCGGGGTTCCS-EEEECCTTCH---HHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCccccccccchhhhhhhhhccccCc-eEEECCCCCH---HHH
Confidence 4679999987 9999998888877 899 899998765411 11111122 2222222221 234
Q ss_pred HHHhCCCccEEEEcccC
Q 016933 259 AEMTNGGVDRSVECTGN 275 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~ 275 (380)
.++...++|+||++++.
T Consensus 84 ~~~~~~~~D~vih~A~~ 100 (362)
T 3sxp_A 84 RRLEKLHFDYLFHQAAV 100 (362)
T ss_dssp HHHTTSCCSEEEECCCC
T ss_pred HHhhccCCCEEEECCcc
Confidence 44423489999999884
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.24 Score=45.03 Aligned_cols=134 Identities=20% Similarity=0.281 Sum_probs=78.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEE-EEcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRII-GVDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi-~~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|.|+|.|.+|...+...+.. ++ +++ +.++++++.+. .+++|...++. + +.+.+. ...+|+|+.|+.
T Consensus 4 rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~~--~----~~~ll~---~~~~D~V~i~tp 73 (344)
T 3ezy_A 4 RIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLGVEKAYK--D----PHELIE---DPNVDAVLVCSS 73 (344)
T ss_dssp EEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHTCSEEES--S----HHHHHH---CTTCCEEEECSC
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhCCCceeC--C----HHHHhc---CCCCCEEEEcCC
Confidence 588999999998766655444 56 555 56777777554 45677654432 2 433332 237999999998
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecc-ccccc--cccEEEeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTK-PINVL--NERTLKGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~--~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
...+...+..++.. |+-+++..+.....-... ..... +++.+.-.+ ..+....+..+.+++++|.+.
T Consensus 74 ~~~h~~~~~~al~~--gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~--~~R~~p~~~~~k~~i~~G~iG 143 (344)
T 3ezy_A 74 TNTHSELVIACAKA--KKHVFCEKPLSLNLADVDRMIEETKKADVILFTGF--NRRFDRNFKKLKEAVENGTIG 143 (344)
T ss_dssp GGGHHHHHHHHHHT--TCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC--GGGGCHHHHHHHHHHHTTTTS
T ss_pred CcchHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee--cccCCHHHHHHHHHHHcCCCC
Confidence 87777788888877 455556543211111100 00111 233332221 233345677888888888663
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=45.39 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=64.7
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE--ecCCCCCccHHHHHHHHhCCC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF--VNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v--i~~~~~~~~~~~~~~~~~~~~ 265 (380)
.....++++.+||=+|+| .|..++.+|+. |+ +|++++.+++-++.+++.-.... .+..+.+... .....+.
T Consensus 38 l~~l~l~~g~~VLDlGcG-tG~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~----~~~~~~~ 110 (261)
T 3iv6_A 38 IFLENIVPGSTVAVIGAS-TRFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEI----PKELAGH 110 (261)
T ss_dssp HHTTTCCTTCEEEEECTT-CHHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCC----CGGGTTC
T ss_pred HHhcCCCCcCEEEEEeCc-chHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeeccccc----ccccCCC
Confidence 445678899999999986 47788888874 77 99999999999999887433221 1222211000 0011347
Q ss_pred ccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSVECTGN--------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
||+|+-...- ...+..+.+.+ |+ |++++.
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS 147 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS 147 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence 9999865321 12566777788 97 988754
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.17 Score=41.90 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=45.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCc-cHHHHHHHHhCCCccEEEEcc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDR-PIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~-~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+++||+|+ |.+|...+..+... +|+++++++++.+.+.+ ++. .++..+-.+. .+.+.+.+ .+++|++|++.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~--~~~id~vi~~a 74 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEE--AGPLDLLVHAV 74 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHH--HCSEEEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHh--cCCCCEEEECC
Confidence 36899997 99998766554433 89999998877665543 433 3332222221 23333332 24799999998
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 75 g~ 76 (207)
T 2yut_A 75 GK 76 (207)
T ss_dssp CC
T ss_pred Cc
Confidence 74
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.34 Score=43.28 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=53.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHH--HHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIA--EMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~--~~~~~~~d~v~d~~g 274 (380)
.+|+|+|+|++|.+.+..+. .|. .|..+++++++.+.+++.|..... .... +...+. ......+|+||-++-
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~~~~~~l~~~G~~~~~-~~~~---~~~~~~~~~~~~~~~D~vilavK 76 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQEQAAAIQSEGIRLYK-GGEE---FRADCSADTSINSDFDLLVVTVK 76 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHCEEEEE-TTEE---EEECCEEESSCCSCCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCHHHHHHHHhCCceEec-CCCe---ecccccccccccCCCCEEEEEeC
Confidence 47999999999988777777 787 899999999888888877753221 1000 000000 000125788888876
Q ss_pred ChhhHHHHHHHhhc
Q 016933 275 NIDNMISAFECVHD 288 (380)
Q Consensus 275 ~~~~~~~~~~~l~~ 288 (380)
. ..+..+++.+++
T Consensus 77 ~-~~~~~~l~~l~~ 89 (307)
T 3ego_A 77 Q-HQLQSVFSSLER 89 (307)
T ss_dssp G-GGHHHHHHHTTS
T ss_pred H-HHHHHHHHHhhc
Confidence 5 445556666653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.14 Score=43.29 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=64.6
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
....++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++ ..--.++..+..+... .. ...
T Consensus 67 ~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~-~~~ 141 (227)
T 1g8a_A 67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE---YR-ALV 141 (227)
T ss_dssp CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG---GT-TTC
T ss_pred HhcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch---hh-ccc
Confidence 344578899999999875 8888889988752 399999999976655543 2111122211111000 00 012
Q ss_pred CCccEEEEcccChh---h-HHHHHHHhhcCCcEEEEE
Q 016933 264 GGVDRSVECTGNID---N-MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 264 ~~~d~v~d~~g~~~---~-~~~~~~~l~~~~G~~v~~ 296 (380)
+.+|+|+.....+. . +..+.+.|+++ |.+++.
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 177 (227)
T 1g8a_A 142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCceEEEECCCCHhHHHHHHHHHHHhcCCC-CEEEEE
Confidence 36999986554432 3 77888999997 998876
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.044 Score=50.43 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=70.8
Q ss_pred cchhhcchhhhhhhhhhhhccCC-CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh----hH---HHHHHh-cCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKP-ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS----KR---FEEAKK-FGV 241 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~----~~---~~~~~~-lG~ 241 (380)
+..-+..+.++.-+.++ +..+. -+..+|+|.|+|..|..++.++..+|+++|+.++++- +| +...++ +.-
T Consensus 163 DiqGTa~V~lAall~al-~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~ 241 (398)
T 2a9f_A 163 DQHGTAIVVLAAIFNSL-KLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAK 241 (398)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHH
T ss_pred hhhhHHHHHHHHHHHHH-HHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhh
Confidence 34433333434444443 33332 2446899999999999999999999998999998752 11 111111 100
Q ss_pred ceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 242 TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 242 ~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+ .+.......+.+.++ ++|+++-+++..-..+++++.|+++ -.+.-+..+.
T Consensus 242 ~--~~~~~~~~~L~eav~-----~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt 292 (398)
T 2a9f_A 242 V--TNREFKSGTLEDALE-----GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPI 292 (398)
T ss_dssp H--HSCTTCCCSCSHHHH-----TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSS
T ss_pred c--cCcccchhhHHHHhc-----cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCC
Confidence 0 010001112334443 3699998877434566899999986 7777776654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.19 Score=44.31 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=54.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
.+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+.+.|.+. .+.. +.. ...|+||.++..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~----~~~~--------~~~-~~aDvVi~av~~ 77 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGIPL----TDGD--------GWI-DEADVVVLALPD 77 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTCCC----CCSS--------GGG-GTCSEEEECSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCCCc----CCHH--------HHh-cCCCEEEEcCCc
Confidence 47999999 9999998888888898 8999999999988888777432 1111 011 258999999876
Q ss_pred hhhHHHHHHHhh
Q 016933 276 IDNMISAFECVH 287 (380)
Q Consensus 276 ~~~~~~~~~~l~ 287 (380)
. .+...++.+.
T Consensus 78 ~-~~~~v~~~l~ 88 (286)
T 3c24_A 78 N-IIEKVAEDIV 88 (286)
T ss_dssp H-HHHHHHHHHG
T ss_pred h-HHHHHHHHHH
Confidence 3 3455555443
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.097 Score=47.20 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=47.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhcCCceEecCCCCC-ccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKFGVTDFVNTSEHD-RPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~lG~~~vi~~~~~~-~~~~~~~~~~~~~~~d~v~d 271 (380)
.+.+|||+|+ |.+|...+..+...|+ +|++++++..+.. .++.+.--.++..+-.+ ..+.+.+.+. ++|+||+
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~---~~D~vih 94 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF---KPTHVVH 94 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH---CCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc---CCCEEEE
Confidence 4678999997 9999998888888898 8999888543321 11222111222222222 1133333322 6999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
++|.
T Consensus 95 ~A~~ 98 (330)
T 2pzm_A 95 SAAA 98 (330)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 380 | ||||
| d1d1ta2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 1e-49 | |
| d1p0fa2 | 174 | c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog | 9e-45 | |
| d2fzwa1 | 197 | b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase | 2e-43 | |
| d1e3ia2 | 174 | c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse ( | 2e-43 | |
| d1cdoa1 | 199 | b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase | 6e-43 | |
| d2jhfa2 | 176 | c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse ( | 2e-41 | |
| d1e3ia1 | 202 | b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase | 1e-40 | |
| d2fzwa2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 1e-40 | |
| d2jhfa1 | 198 | b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase | 3e-39 | |
| d1p0fa1 | 198 | b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro | 1e-38 | |
| d1f8fa2 | 174 | c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase { | 2e-34 | |
| d1cdoa2 | 175 | c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga | 3e-34 | |
| d1f8fa1 | 194 | b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr | 2e-27 | |
| d1uufa1 | 179 | b.35.1.2 (A:3-144,A:313-349) Hypothetical protein | 2e-22 | |
| d1vj0a1 | 184 | b.35.1.2 (A:2-155,A:338-367) Hypothetical protein | 2e-18 | |
| d1llua1 | 175 | b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase | 3e-18 | |
| d1jqba2 | 174 | c.2.1.1 (A:1140-1313) Bacterial secondary alcohol | 4e-18 | |
| d1jvba1 | 177 | b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase | 5e-17 | |
| d1piwa1 | 192 | b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy | 5e-17 | |
| d1vj0a2 | 182 | c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T | 1e-14 | |
| d1e3ja1 | 178 | b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor | 2e-14 | |
| d1h2ba1 | 171 | b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas | 4e-14 | |
| d1rjwa1 | 171 | b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase | 8e-14 | |
| d1kola1 | 201 | b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog | 1e-12 | |
| d1h2ba2 | 172 | c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo | 1e-12 | |
| d1pl8a2 | 171 | c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh | 3e-12 | |
| d1pl8a1 | 185 | b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor | 5e-11 | |
| d1uufa2 | 168 | c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc | 8e-11 | |
| d1jqba1 | 177 | b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon | 2e-10 | |
| d1kola2 | 195 | c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps | 4e-10 | |
| d1iz0a1 | 131 | b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase | 3e-06 | |
| d1yb5a1 | 150 | b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas | 5e-06 | |
| d1gu7a1 | 175 | b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu | 4e-04 |
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 163 bits (412), Expect = 1e-49
Identities = 71/175 (40%), Positives = 104/175 (59%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
AP +KVC++ CG STG GA + K + GS+ VFGLG VGL+ G + AGASRIIG+D
Sbjct: 2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+ +FE+A G T+ ++ + +PI EV++EMT V + E G+++ MI A H
Sbjct: 62 LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
+G +V+VGVP + P+ + RT KG FG K R D+P +V ++ K
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 150 bits (379), Expect = 9e-45
Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
APL+ C++ CG +TG GA +N AK GS+ AVFGLG VG +A G + AGASRIIGV
Sbjct: 1 APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+F +A + G T+ +N ++D+PI EVI E TNGGVD +VEC G I+ M++A + +
Sbjct: 60 THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
G GV V++G+ S + P+ +L R+LKG+ FG +K ++ +VD YM K
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKK 173
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 147 bits (372), Expect = 2e-43
Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
A ++ CKAAVAWEAGKPL I+++EVAPP+A EVRIKI T++C TD Y F
Sbjct: 1 ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 65 PRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
P I GH AG+VESVGEGV+ L+ GD V+P++ +CG+C+ C + +N+C +R+ +G
Sbjct: 61 PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGL 184
+M DG SRF+ G+ + H++GTSTFSEYTVV VAKI+PL +D+ +
Sbjct: 121 LM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN 179
Query: 185 GATLNVAKPERGSSVAV 201
A + + +V
Sbjct: 180 KAFELMHSGKSIRTVVK 196
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 147 bits (370), Expect = 2e-43
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 2/175 (1%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
A L++VC++ CG S+G GA +N AK GS+ AVFGLG VGL+A G +IAGASRII +D
Sbjct: 1 ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+ ++F +AK G TD +N E D+P+Q+VI E+T GGVD S++C G + +A +C
Sbjct: 61 INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
GWG +VG + ++V+ R++ GTFFG +K +P++V Y NK
Sbjct: 121 LGWGSCTVVGAKVDEMTIP--TVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNK 173
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 146 bits (369), Expect = 6e-43
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 1/200 (0%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
+T G ++ CKAAVAWEA KPL+I+++EV P A E+RIKI T +C TDLY
Sbjct: 1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
FP + GHE AG+VESVG GV++ + G+ V+P+F +CG+CR C+S +N C N
Sbjct: 61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
VM + ++RF+ G V FLGTSTFS+YTVV+ VAKI+P LD+ + +
Sbjct: 121 PDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179
Query: 183 GLGATLNVAKPERGSSVAVF 202
A + + +V
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 142 bits (357), Expect = 2e-41
Identities = 81/175 (46%), Positives = 117/175 (66%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
+PL+KVC++ CG STG G+ + VAK +GS+ AVFGLG VGL+ G + AGA+RIIGVD
Sbjct: 1 SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+ +F +AK+ G T+ VN ++ +PIQEV+ EM+NGGVD S E G +D M++A C
Sbjct: 61 INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
+ +GV+V+VGVP P+ +L+ RT KG FG +K + +P +V +M K
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAK 175
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 140 bits (354), Expect = 1e-40
Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 7/201 (3%)
Query: 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
T G ++ CKAA+AW+ G PL I+++EV+PP+A EVRI++ T +C TD+ + K + L
Sbjct: 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKAL 60
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRI---N 120
FP + GHE AG+VESVG GV++ + GD V+P F +C C+ C S ++N+C LR
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 121 PVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGV 180
+ ++ D SRF+ G + HF+G S+FS+YTVV +A+++ LD + +
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180
Query: 181 STGLGATLNVAKPERGSSVAV 201
+ + +++ K G S+
Sbjct: 181 ES-INDAIDLMKE--GKSIRT 198
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 139 bits (351), Expect = 1e-40
Identities = 93/175 (53%), Positives = 119/175 (68%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
APLDKVC+L CG+STG GA +N AK E GS AVFGLG VGLA G ++AGASRIIGVD
Sbjct: 1 APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+ +F AK+FG T+ +N + +PIQEV+ EMT+GGVD S EC GN+ M +A E H
Sbjct: 61 INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
GWGV+V+VGV + T+P ++ RT KGT FG +K +P +V YM+K
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSK 175
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 136 bits (344), Expect = 3e-39
Identities = 92/203 (45%), Positives = 123/203 (60%), Gaps = 9/203 (4%)
Query: 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
STAG ++ CKAAV WE KP I++VEVAPP+A EVRIK+ T +CR+D + TP
Sbjct: 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
P I GHEAAG+VES+GEGV+ + GD V+P+FT +CG CR C+ N C ++
Sbjct: 61 -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDK--VCILSCGV 180
RG M DG SRF+ G+P++HFLGTSTFS+YTVV VAKI+ LD +L
Sbjct: 120 RGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFE- 177
Query: 181 STGLGATLNVAKPERGSSVAVFG 203
+ ++ + G S+
Sbjct: 178 --KINEGFDLLRS--GESIRTIL 196
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 135 bits (339), Expect = 1e-38
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL 63
TAG +TCKAAVAWE KPL ++ + VAPP+A EVRIKI + +C +D + +
Sbjct: 2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF 61
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
+ HEA GVVES+G GV+ ++ GD V+P+F +CG CR C+S SN C+ + +
Sbjct: 62 PVILG-HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA-K 119
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTG 183
++AD SRF+ G+P+ + +GTSTF+EYTVV VAKI+P ++ +
Sbjct: 120 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLT---- 175
Query: 184 LGATLNVAKPERGSSVAVFGLGAVGL 209
+ + + + G G +
Sbjct: 176 ------LDQINKAFELLSSGQGVRSI 195
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 123 bits (308), Expect = 2e-34
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228
P++ + L CG+ TG GA +N K SS +G GAVGL+A A++ GAS II VD
Sbjct: 2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61
Query: 229 SSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD 288
R E AK+ G T +N+ D I E+T+GGV+ ++E TG+ + + +
Sbjct: 62 VESRLELAKQLGATHVINSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDA-LG 118
Query: 289 GWGVAVLVGVPSKDAVFMTKPINVL-NERTLKGTFFGNYKPRTDLPSVVDMYMNKQ 343
G +VG P ++L +T+ G G+ P+ +P +V +Y +
Sbjct: 119 ILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 122 bits (307), Expect = 3e-34
Identities = 95/175 (54%), Positives = 121/175 (69%), Gaps = 1/175 (0%)
Query: 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227
APLD VC+L CGVSTG GA +N AK E GS+ AVFGLGAVGLAA G AGA RII VD
Sbjct: 1 APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60
Query: 228 RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
+ +FE+AK FG TDFVN ++H PI +V+++MTNGGVD S+EC GN+ M +A E
Sbjct: 61 LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120
Query: 288 DGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNK 342
GWGV+VLVG V T+PI ++ RT KG+ FG +K + +P +V Y++K
Sbjct: 121 KGWGVSVLVGWTDLHDVA-TRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDK 174
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 105 bits (261), Expect = 2e-27
Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 30/219 (13%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFG 69
AAV G +Q +++ PQ EV +K+ T +C TDL + K P P + G
Sbjct: 3 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 61
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HE +G++E++G V++L+VGDHV+ + G CG C C + C G ++
Sbjct: 62 HEGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SE 119
Query: 130 GQSRFSINGE--PVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
G + + +HF S+F+ Y + K+ P D++
Sbjct: 120 GNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAF-------- 171
Query: 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGV 226
+ AA + + II +
Sbjct: 172 -----------------DEINQAAIDSRKGITLKPIIKI 193
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 91.2 bits (225), Expect = 2e-22
Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 16/180 (8%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
KA A+ A +PL D+ P +V+I+I Y +C +DL+ S+ ++P + GHE
Sbjct: 2 KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61
Query: 72 AAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
G V +VG+ V GD V + C C C + N C D
Sbjct: 62 IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC--------------DH 107
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP-LAPLDKVCILSCGVSTGLGATLN 189
+ + P +S+ VVH V +I + + ++ L +
Sbjct: 108 MTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVK 167
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 80.3 bits (197), Expect = 2e-18
Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 28/201 (13%)
Query: 9 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
L A V + +PL+ ++ E++ + ++I +C +D++ + + P I
Sbjct: 3 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62
Query: 69 GHEAAGVVESVGEGVSDLEVGD-----HVLPVFTGECGDCRHCRSDV-SNMCDLLRINPV 122
GHE AG V V DL ++ CG+C C+ +C ++ +
Sbjct: 63 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGI 122
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG-CVAKINPLAPLDKVCILSCGVS 181
G S + H G +S + V+ V K++ L
Sbjct: 123 NR-----GCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN- 165
Query: 182 TGLGATLNVAKPERGSSVAVF 202
L + + V ++
Sbjct: 166 ----KALELMESREALKVILY 182
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 79.6 bits (195), Expect = 3e-18
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIF 68
T KAAV G PL I++V+V P +V +KI+ + +C TDL+ E P P I
Sbjct: 5 TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64
Query: 69 GHEAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
GHE G V +VG GV+ ++ GD V +P CG C HC + +C+
Sbjct: 65 GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCE------------ 112
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
+ + ++EY + V + P + + G +
Sbjct: 113 ----------SQQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQI 158
Query: 188 LNVAK--PERGSSVAV 201
L+ + G V
Sbjct: 159 LDQMRAGQIEGRIVLE 174
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 79.2 bits (194), Expect = 4e-18
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228
PL+ +++ ++TG +A E GSSV V G+GAVGL GA++ GA RIIGV
Sbjct: 2 PLENAVMITDMMTTGFHG-AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60
Query: 229 SSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD 288
E AK +G TD +N ++ +V+ GVDR + G + + A + V
Sbjct: 61 RPICVEAAKFYGATDILNY-KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119
Query: 289 GWGVAVLVGVPSKDAVFMTKPIN---VLNERTLKGTFFGNYKPRTD 331
G G+ + + + + +T+KG + R +
Sbjct: 120 G-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAE 164
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 76.1 bits (186), Expect = 5e-17
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 33/199 (16%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE--------SKGQTPL 63
+A E GKPL +Q++ V P+ +V IK++ +C +D++ + +
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 64 FPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVR 123
P GHE AG +E VG+ V GD V G+C +CR ++CD R +
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121
Query: 124 GVMLADGQSRFSINGEPVNHFLGTSTFSEYTVV-HSGCVAKINPLAPLDKVCILSCGVST 182
++EY +V H + K+ + P+ + +
Sbjct: 122 FDG----------------------AYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159
Query: 183 GLGATLNVAKPERGSSVAV 201
+ N G V +
Sbjct: 160 AIDNLENFKA--IGRQVLI 176
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.4 bits (187), Expect = 5e-17
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 18/188 (9%)
Query: 18 EAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVE 77
E K + P ++ IKI+ +C +D++ P + GHE G V
Sbjct: 16 EDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVV 75
Query: 78 SVGEG-VSDLEVGDH-VLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFS 135
+G S L+VG + C +C C++D C + +
Sbjct: 76 KLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCT---------------KFVTT 120
Query: 136 INGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPER 195
+ + ++ ++ Y VH V I ++ + + GV +
Sbjct: 121 YSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFER-MEKGDVRY 179
Query: 196 GSSVAVFG 203
++ +
Sbjct: 180 RFTLVGYD 187
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 69.2 bits (168), Expect = 1e-14
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 8/173 (4%)
Query: 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229
LD + + C +T A + G +V + G G +GL AR GA +I + S
Sbjct: 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62
Query: 230 SKRFEEAKKFGVTDFVNTSEH--DRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287
R + A++ G +N E + + ++ G D +E TG+ ++ E +
Sbjct: 63 PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122
Query: 288 DGWGVAVLVGVPSKDAVFMTKPIN--VLNERTLKGTFFGNYKPRTDLPSVVDM 338
G G + GV K VL T KG + + + V +
Sbjct: 123 RG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD---TSHFVKTVSI 171
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 68.9 bits (167), Expect = 2e-14
Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 26/194 (13%)
Query: 13 AAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWES---KGQTPLFPRIFG 69
+AV ++ L ++ + P+ EV +++ Y +C +D++++E P + G
Sbjct: 4 SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62
Query: 70 HEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
HEA+G V VG+ V L+ GD V C C+ C+ N+C
Sbjct: 63 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCP-------------- 108
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN 189
+ + Y V + K+ + ++ S + + A
Sbjct: 109 -------DLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA-FE 160
Query: 190 VAKPERGSSVAVFG 203
A+ + +++ V
Sbjct: 161 AARKKADNTIKVMI 174
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 67.8 bits (164), Expect = 4e-14
Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 28/194 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEV-APPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
KAA E KPL I+DV+ +V ++I +C TDL+ + L P++
Sbjct: 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60
Query: 71 EAAGVVESV---GEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVML 127
V + EGV LE GD V+ G C CR+ C+
Sbjct: 61 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCE------------ 108
Query: 128 ADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGAT 187
G ++ F+E+ V K+ ++ ++ L
Sbjct: 109 -----NLEFPGLNIDGG-----FAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158
Query: 188 LNVAKPERGSSVAV 201
G +V +
Sbjct: 159 EKGEVL--GRAVLI 170
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 66.9 bits (162), Expect = 8e-14
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 32/196 (16%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWE-SKGQTPLFPRIFGH 70
KAAV + +PL I++VE EV ++IK +C TDL+ P P I GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 71 EAAGVVESVGEGVSDLEVGDHV-LPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLAD 129
E G+VE VG GV+ L+VGD V +P CG C +C S +C
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------- 106
Query: 130 GQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCI--LSCGVSTGLGAT 187
+ + ++EY + V KI ++ + ++ L
Sbjct: 107 -------EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159
Query: 188 LNVAKPERGSSVAVFG 203
+N G V
Sbjct: 160 IN------GRVVLTLE 169
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 64.1 bits (155), Expect = 1e-12
Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 28/218 (12%)
Query: 12 KAAVAWEAGKPLIIQDVEV-------APPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLF 64
+ V +GK + +Q ++ V +K+ T++C +D + +
Sbjct: 3 RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQ-V 60
Query: 65 PRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRG 124
+ GHE G V G V +L++GD V F CG CR C+ + +C + G
Sbjct: 61 GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 120
Query: 125 VMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS--GCVAKINPLAPLDKVCILSCGVST 182
++ +EY +V + K+ + ++ V
Sbjct: 121 AYGYVDMGDWTG------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGV 168
Query: 183 GLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA 220
+ + L+ A G F G + + A
Sbjct: 169 QVIS-LDDAPRGYG----EFDAGVPKKFVIDPHKTFSA 201
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 63.4 bits (153), Expect = 1e-12
Identities = 32/166 (19%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 176 LSCGVSTGLGATLNVAKPER-GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE 234
L+ T A A+ G+ VA+ G+G +G A + ++ + +I +D ++ +
Sbjct: 12 LADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK 71
Query: 235 EAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAV 294
A++ G V+ P+++V+ GV+ +++ G+ + + G +
Sbjct: 72 LAERLGADHVVDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLI 128
Query: 295 LVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYM 340
+VG + + I +E + +G+ GNY +L +V + +
Sbjct: 129 IVGYGGELRFPTIRVI--SSEVSFEGSLVGNYV---ELHELVTLAL 169
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (151), Expect = 3e-12
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 12/170 (7%)
Query: 176 LSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEE 235
LS G+ G V V G G +G+ A+ GA++++ D S+ R +
Sbjct: 12 LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66
Query: 236 AKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAV 294
AK+ G + S+ E G + ++ECTG ++ + G G V
Sbjct: 67 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLV 125
Query: 295 LVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQL 344
LVG+ S+ + E +KG F + P + M +K +
Sbjct: 126 LVGLGSEMTTVPLLHA-AIREVDIKGVF----RYCNTWPVAISMLASKSV 170
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 5e-11
Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 28/198 (14%)
Query: 14 AVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL---FPRIFGH 70
++ L +++ + P EV +++ +C +D+++WE P + GH
Sbjct: 10 SLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGH 69
Query: 71 EAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADG 130
EA+G VE VG V L+ GD V + C+ N+ +
Sbjct: 70 EASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDD---- 125
Query: 131 QSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNV 190
+ ++ K+ + + + L A
Sbjct: 126 -----------------GNLCRFYKHNAAFCYKLPDN--VKPLVTHRFPLEKALEA-FET 165
Query: 191 AKPERGSSVAVFGLGAVG 208
K G + +
Sbjct: 166 FKKGLGLKIML-KCDPSD 182
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 58.1 bits (139), Expect = 8e-11
Identities = 35/173 (20%), Positives = 53/173 (30%), Gaps = 12/173 (6%)
Query: 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIG 225
P L V L C T L + G V V G+G +G + A GA +
Sbjct: 2 PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAF 60
Query: 226 VDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFEC 285
+KR E AK G + VN D + N+
Sbjct: 61 TTSEAKR-EAAKALGADEVVN------SRNADEMAAHLKSFDFILNTVAAPHNLDDFTTL 113
Query: 286 VHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDM 338
+ G LVG P+ ++ R + G+ G + ++D
Sbjct: 114 LKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG---IPETQEMLDF 162
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 57.3 bits (137), Expect = 2e-10
Identities = 35/201 (17%), Positives = 57/201 (28%), Gaps = 29/201 (14%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHE 71
K K L + E + + ++ S C +D++ I GHE
Sbjct: 2 KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60
Query: 72 AAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQ 131
A G V VG V D + GD V+ T ++ +
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSN---------------- 104
Query: 132 SRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 191
+ F EY V+ + LA L K LS V+ ++
Sbjct: 105 ---GMLAGWKFSNFKDGVFGEYFHVNDADMN----LAILPKDVDLSKLVTHVYHGFDHI- 156
Query: 192 KPERGSSVAVFGLGAVGLAAA 212
++ + L A
Sbjct: 157 ----EEALLLMKDKPKDLIKA 173
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 56.4 bits (135), Expect = 4e-10
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 20/150 (13%)
Query: 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229
+ + LS + TG A GS+V V G G VGLAAA AR+ GA+ +I D +
Sbjct: 1 IRDLTCLSDILPTGYHG-AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59
Query: 230 SKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTG-------------- 274
R AK G + + + E IA + VD +V+ G
Sbjct: 60 PARLAHAKAQGFEIADLSLDTP--LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHE 117
Query: 275 -NIDNMISAFECVHDGWGVAVLVGVPSKDA 303
+ S + G + G+ +
Sbjct: 118 APATVLNSLMQVTRVA-GKIGIPGLYVTED 146
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Score = 44.0 bits (103), Expect = 3e-06
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 12 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGH 70
KA V G PL + D+ + EV ++++ L D T L P
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 12 KAAVAWEAGKPL---IIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIF 68
+A +E G P + D+ V P+ +V IK+ + + Y
Sbjct: 4 RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63
Query: 69 -GHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMC 114
G + AGV+E+VG+ S + GD V T G + + +
Sbjct: 64 PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVY 110
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 38.6 bits (88), Expect = 4e-04
Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 19/183 (10%)
Query: 8 ILTCKAAVAWEAGKP-----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTP 62
++T +A + + G+P +++ EV +K + + +D+
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQI------- 53
Query: 63 LFPRIFGHEAAGVVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPV 122
G + ++ G G ++ +F + + +N
Sbjct: 54 -----QGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFG 108
Query: 123 RGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVST 182
A G I + T + PL ++ ++
Sbjct: 109 TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDAK-SIETLYDGTKPLHELYQDGVA-NS 166
Query: 183 GLG 185
G
Sbjct: 167 KDG 169
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| d1cdoa1 | 199 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 100.0 | |
| d2fzwa1 | 197 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 100.0 | |
| d1e3ia1 | 202 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 100.0 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 100.0 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 100.0 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d1p0fa1 | 198 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 100.0 | |
| d2jhfa1 | 198 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 100.0 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 100.0 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 100.0 | |
| d1piwa1 | 192 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 100.0 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 100.0 | |
| d1kola1 | 201 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 100.0 | |
| d1jqba1 | 177 | Bacterial secondary alcohol dehydrogenase {Clostri | 100.0 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.98 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1uufa1 | 179 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.97 | |
| d1yb5a1 | 150 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.96 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 99.96 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.96 | |
| d1qora1 | 147 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 99.95 | |
| d1iz0a1 | 131 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.95 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.95 | |
| d1xa0a1 | 152 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.94 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 99.94 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.94 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.93 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.93 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.92 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.92 | |
| d1o89a1 | 146 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.92 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.92 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.91 | |
| d1gu7a1 | 175 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.91 | |
| d1tt7a1 | 162 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.91 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.91 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.9 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.9 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.89 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.88 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.84 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.82 | |
| d1vj1a1 | 166 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.64 | |
| d1v3va1 | 147 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.64 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.5 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.17 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.05 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.66 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.65 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.64 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.54 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.45 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.42 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.31 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.29 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.26 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.25 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.24 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.24 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.16 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.13 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.12 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.11 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.09 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.08 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.03 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 96.99 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.98 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 96.93 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.9 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.88 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.85 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.84 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 96.84 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.82 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.81 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.79 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 96.79 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.77 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.76 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 96.75 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.75 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 96.73 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.68 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 96.68 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 96.67 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.65 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 96.63 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 96.63 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.6 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.57 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 96.57 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.57 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.56 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.53 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.51 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.5 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.49 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 96.44 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.43 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 96.41 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.4 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 96.4 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.39 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.38 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.38 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.36 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.33 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 96.33 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.25 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.22 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.21 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.21 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.2 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.16 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 96.13 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 96.13 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 96.12 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.12 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.12 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.06 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.05 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 96.03 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.0 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 95.96 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.95 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.95 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 95.93 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 95.88 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 95.78 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 95.65 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.54 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.49 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 95.47 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 95.47 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 95.44 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.38 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.32 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 95.23 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.23 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 95.18 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 95.13 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 95.09 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.07 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 94.98 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 94.97 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 94.92 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 94.91 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.84 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.76 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 94.71 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.66 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 94.63 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 94.62 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 94.58 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.47 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 94.4 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.37 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.29 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 94.29 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 94.27 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.2 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.17 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.15 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.14 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 94.09 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 93.97 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 93.87 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.84 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.83 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 93.79 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.75 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 93.71 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 93.71 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.68 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.66 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.53 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.52 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 93.5 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.5 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.48 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 93.45 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.45 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 93.43 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 93.42 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 93.25 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.19 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.17 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.16 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 93.04 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 93.02 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 92.95 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 92.91 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.8 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 92.8 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 92.79 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.77 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.67 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.59 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.59 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 92.57 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.48 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.33 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 92.3 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.22 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 92.21 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 92.19 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.18 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.17 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 92.17 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.12 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.04 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.03 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.99 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 91.81 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.7 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 91.7 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 91.65 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 91.64 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.63 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 91.62 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 91.54 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.5 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.5 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 91.49 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.46 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.37 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 91.36 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.23 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.07 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 91.05 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.98 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 90.97 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 90.87 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 90.82 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.8 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 90.72 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 90.69 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 90.66 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.6 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 90.58 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.56 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 90.51 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.5 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 90.46 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.46 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.45 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.36 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.28 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.2 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 90.17 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 90.1 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 90.08 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.03 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 90.02 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 89.96 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.85 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 89.85 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 89.8 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.74 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.53 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 89.51 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 89.5 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.36 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 89.29 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.29 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 89.01 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.96 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 88.91 | |
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 88.86 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.76 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.72 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 88.67 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.59 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 88.58 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.32 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 88.31 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 88.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 88.21 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.09 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 87.9 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 87.87 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 87.82 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.8 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 87.78 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 87.55 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 87.54 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 87.49 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 87.48 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 87.38 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 87.09 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 86.84 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 86.71 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.63 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.46 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.4 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 86.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 86.14 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 86.04 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.03 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.91 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.64 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.6 | |
| d1p3ha_ | 99 | Chaperonin-10 (GroES) {Mycobacterium tuberculosis | 85.57 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 85.34 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.2 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 85.11 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.91 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 84.81 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 84.74 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 84.67 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 84.62 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 84.48 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 84.47 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.32 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.27 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.26 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 84.2 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.16 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 83.93 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 83.69 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 83.6 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 83.44 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.29 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 83.19 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 83.18 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.93 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 82.85 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 82.75 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 82.51 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 82.48 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 82.25 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 82.03 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 82.02 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 81.89 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 81.85 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 81.62 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 81.44 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 81.02 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 81.01 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.93 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 80.92 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 80.91 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.78 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.77 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 80.65 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.55 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 80.52 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.48 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 80.33 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 80.27 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 80.04 |
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=100.00 E-value=1e-39 Score=277.67 Aligned_cols=198 Identities=42% Similarity=0.695 Sum_probs=178.3
Q ss_pred ccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 4 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
|...+||+||++++++++|++++++++|+|++|||||||.++|||++|++.+.+......+|.++|||++|+|+++|+++
T Consensus 2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v 81 (199)
T d1cdoa1 2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV 81 (199)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence 34567889999999999999999999999999999999999999999999999977777899999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
++|++||||++.+..+|+.|.+|+++.+++|.+.+.....+.. ..+...+..+|....+..+.|+||||++++++.+++
T Consensus 82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~ 160 (199)
T d1cdoa1 82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK 160 (199)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred ceecCCCEEEEeeeccccccccccCCCcccccccccccccccc-cCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence 9999999999999999999999999999999988766443432 455556666776666777789999999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+|++++++++|++.+++.|++.++......+.|++|||+
T Consensus 161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~ 199 (199)
T d1cdoa1 161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199 (199)
T ss_dssp CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 999999999999999999999998777888999999984
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=100.00 E-value=5e-38 Score=266.15 Aligned_cols=195 Identities=45% Similarity=0.772 Sum_probs=172.5
Q ss_pred hhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCC
Q 016933 7 LILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
..|+|||+++++++++|+++++|+|+|+++||||||+++|||++|++++.|.+....+|+++|||++|+|+++|++++.+
T Consensus 3 ~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~~ 82 (197)
T d2fzwa1 3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL 82 (197)
T ss_dssp CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred CceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCceec
Confidence 35789999999999999999999999999999999999999999999999987778899999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+|+.|.+|+.+.+..|.+.......|.. .+....+..+|..+.++.+.|+||||+++++.+++++|+
T Consensus 83 ~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~ 161 (197)
T d2fzwa1 83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP 161 (197)
T ss_dssp CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred CCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECCC
Confidence 9999999999999999999999999999986554333333 444555666677777777789999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+++++++|++++++.|++.++......+.+++|||+
T Consensus 162 ~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi 197 (197)
T d2fzwa1 162 LIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197 (197)
T ss_dssp TSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence 999999999999999999987555556788899874
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=100.00 E-value=9.4e-37 Score=260.28 Aligned_cols=194 Identities=38% Similarity=0.717 Sum_probs=167.7
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
...+|||||++++++++|++++++++|+|+++||||||.++|||++|+++++|..+ ..+|+++|||++|+|+++|++++
T Consensus 3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V~ 81 (202)
T d1e3ia1 3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGVT 81 (202)
T ss_dssp TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCce
Confidence 45688999999999999999999999999999999999999999999999998654 56799999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCC---CCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINP---VRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
+|++||||++.+...|+.|.+|++|.+++|.+..... ..+.....+...+..+|....+..+.|+|+||+++++..+
T Consensus 82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l 161 (202)
T d1e3ia1 82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL 161 (202)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence 9999999999999999999999999999999876551 1112223345556677777777778899999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+++|++++++.++++.+++.+++.++. .+++|++|.|+
T Consensus 162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi 199 (202)
T d1e3ia1 162 ARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTI 199 (202)
T ss_dssp EECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEE
Confidence 999999999998888888888887752 25689988775
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=1.5e-36 Score=256.12 Aligned_cols=189 Identities=28% Similarity=0.530 Sum_probs=156.9
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
+|+|+++.+.+++|+++++++|+|++||||||+.++|||++|++++.|.++ .++|+++|||++|+|+++|+++++|++|
T Consensus 3 ~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~vG 81 (194)
T d1f8fa1 3 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQVG 81 (194)
T ss_dssp EEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred eeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc-ccCCcccccceEEEeeecCccceeEccC
Confidence 589999999999999999999999999999999999999999999998665 4689999999999999999999999999
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCccccc--CCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSI--NGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~--~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
|||+..+ .+|+.|.+|++|++++|++.......|.. .+|...+.. .+....++.+.|+|+||.+++..+++++|++
T Consensus 82 DrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~ 159 (194)
T d1f8fa1 82 DHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD 159 (194)
T ss_dssp CEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred ceeeeec-ccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence 9996654 58999999999999999987554444543 334333222 2233345566789999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGV 226 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~ 226 (380)
++++++ ++|.|+|.+|++|+|+|+.+|+++|+++
T Consensus 160 i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV 193 (194)
T d1f8fa1 160 FPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193 (194)
T ss_dssp CCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred CCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 876543 4456789999999999999999777775
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=100.00 E-value=3.9e-36 Score=251.33 Aligned_cols=171 Identities=21% Similarity=0.370 Sum_probs=151.8
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+|+|+ ++++++ |+++++++|+|+++|||||++++|||++|++++.+.. ...+.|+++|||++|+|+++|+++++|
T Consensus 2 ~maAV-l~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~ 79 (178)
T d1e3ja1 2 NLSAV-LYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHL 79 (178)
T ss_dssp CEEEE-EEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSC
T ss_pred ceEEE-EEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCC
Confidence 35565 457666 9999999999999999999999999999999887643 234678999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+|+.|++|++|.+++|.+..+. |.... .|+|+||+++++++++++|+
T Consensus 80 ~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~~~------------------~G~~aey~~v~~~~~~~iP~ 138 (178)
T d1e3ja1 80 KKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPPD------------------DGNLARYYVHAADFCHKLPD 138 (178)
T ss_dssp CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTTB------------------CCSCBSEEEEEGGGEEECCT
T ss_pred CCCCEEEECcccccCCccccccCCccccccccce---ecccc------------------ccccceeeeecccceeeCCC
Confidence 9999999999999999999999999999987765 33222 35999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL 204 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~ 204 (380)
++++++++++++.+.|||+++ +.+++++|++|||+|+
T Consensus 139 ~~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~ 175 (178)
T d1e3ja1 139 NCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS 175 (178)
T ss_dssp TCCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred CCCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence 999999999999999999994 7889999999999975
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-35 Score=247.00 Aligned_cols=173 Identities=28% Similarity=0.394 Sum_probs=153.5
Q ss_pred chhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCC
Q 016933 6 GLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
|+|.||||+++.++++|++++++++|.|++||||||+.+++||++|++.++|.++ ...+|.++|||++|+|+++|++++
T Consensus 1 ~~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~ 80 (175)
T d1llua1 1 TLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVT 80 (175)
T ss_dssp CCCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred CcchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcc
Confidence 4788999999999999999999999999999999999999999999999998775 357899999999999999999999
Q ss_pred CCCCCCEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEe
Q 016933 85 DLEVGDHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAK 163 (380)
Q Consensus 85 ~~~~GdrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~ 163 (380)
+|++||||++.+ ...|+.|.+|+++.+++|.+.... |+. ..|+|+||+.++++++++
T Consensus 81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~---G~~-------------------~~gg~aey~~v~~~~~~~ 138 (175)
T d1llua1 81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNT---GYS-------------------VNGGYAEYVLADPNYVGI 138 (175)
T ss_dssp SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEECTTTSEE
T ss_pred ccccCCEEEeccccccCCccccccCCccccccccccc---ccc-------------------cccccceEEEechHHEEE
Confidence 999999998765 457999999999999999987765 433 135899999999999999
Q ss_pred CCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 164 INPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 164 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+|++++++.++++.+++.|+++.+ +.. ..+|++|||+
T Consensus 139 iPd~l~~~~a~~~~~~~~t~~~~~-~~g-~~~G~~VLVl 175 (175)
T d1llua1 139 LPKNVKATIHPGKLDDINQILDQM-RAG-QIEGRIVLEM 175 (175)
T ss_dssp CCTTCCCCEEEECGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred CCCCCChhHHHHHHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence 999999998988888888888874 444 4479999984
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=100.00 E-value=3.5e-36 Score=254.95 Aligned_cols=193 Identities=42% Similarity=0.724 Sum_probs=160.8
Q ss_pred cchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 5 AGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
.....||||++++++++||+++++++|+|+++||||||.++|||++|++++.|..+ ..+|+++|||++|+|+++|++++
T Consensus 3 ~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~-~~~P~i~GHE~~G~Vv~~G~~v~ 81 (198)
T d1p0fa1 3 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT 81 (198)
T ss_dssp TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred CCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc-cccccccceeeeeeeeecCcccc
Confidence 34567999999999999999999999999999999999999999999999988665 46899999999999999999999
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
+|++||||++.+..+|+.|.+|+++++++|.........|.. .++...+..+|....+..+.|+|+||+.+++..++++
T Consensus 82 ~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~ki 160 (198)
T d1p0fa1 82 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKI 160 (198)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred cCcCCCEEEEEeeccccccccccccccccchhhhcccccccc-CCCceeEeeCCeeccccCCCccceeeEEecHHHEEEC
Confidence 999999999999999999999999999999987765333332 3344455566666666777799999999999999999
Q ss_pred CCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHH
Q 016933 165 NPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGL 209 (380)
Q Consensus 165 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~ 209 (380)
|+.++++.++...+...+ +.+++.|||.|+|.+|+
T Consensus 161 p~~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl 195 (198)
T d1p0fa1 161 DPKINVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSI 195 (198)
T ss_dssp CTTSCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEE
T ss_pred CCCCCHHHHHHhhcchhh----------cCCCCEEEEECCCcceE
Confidence 999987766554443322 33445577888887765
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=100.00 E-value=5.9e-35 Score=248.15 Aligned_cols=195 Identities=46% Similarity=0.735 Sum_probs=164.7
Q ss_pred CccchhhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCC
Q 016933 3 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
||...+++|||++++++++||+++++++|+|+++||||||.++|||++|++.+.|..+ .++|.++|||++|+|+++|++
T Consensus 1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~-~~~P~i~GHE~~G~Vv~vG~~ 79 (198)
T d2jhfa1 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV-TPLPVIAGHEAAGIVESIGEG 79 (198)
T ss_dssp CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC-CCSSBCCCCSEEEEEEEECTT
T ss_pred CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcc-cccceecccceeEEEEecCcc
Confidence 3566789999999999999999999999999999999999999999999999998655 468999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceE
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVA 162 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~ 162 (380)
+++|++||||++.+..+|+.|.+|+++.+..|........+|.. .++...+..+|....++.+.|+|+||+++++.+++
T Consensus 80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~ 158 (198)
T d2jhfa1 80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA 158 (198)
T ss_dssp CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence 99999999999999999999999999999999988776444433 34455566777777777788999999999999999
Q ss_pred eCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 163 KINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 163 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
++|+.++++.++...+++...... ...+++|++|+|+
T Consensus 159 ~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi 195 (198)
T d2jhfa1 159 KIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI 195 (198)
T ss_dssp ECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence 999999887766655444433322 2336788988875
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=8.6e-35 Score=241.00 Aligned_cols=166 Identities=28% Similarity=0.382 Sum_probs=150.5
Q ss_pred hhhhhccCCCCeEEEEeecCCC-CCCeEEEEEeeeecCcccchhhccCCC---CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 12 KAAVAWEAGKPLIIQDVEVAPP-QAMEVRIKIKYTSLCRTDLYFWESKGQ---TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~p~~-~~~eVlV~v~~~~l~~~D~~~~~g~~~---~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
||+++.++++||+++++++|++ +++|||||+.+++||++|++.+.|... ...+|+++|||++|+|+++|+++++|+
T Consensus 1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~ 80 (171)
T d1h2ba1 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 80 (171)
T ss_dssp CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence 6889999999999999999985 689999999999999999999888653 356899999999999999999999999
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||||++.+..+|++|.+|++|.+++|.+.... |+. .+|+|+||+.++.++++++|++
T Consensus 81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~~ 138 (171)
T d1h2ba1 81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEFP---GLN-------------------IDGGFAEFMRTSHRSVIKLPKD 138 (171)
T ss_dssp TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCB---TTT-------------------BCCSSBSEEEECGGGEEECCTT
T ss_pred CCCEEEEcCccCCCCcccccccccccccccccc---eee-------------------cccccceeeeehhhcceecCCC
Confidence 999999999999999999999999999987765 433 1369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEE
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAV 201 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI 201 (380)
++++.++++.++++|+|+++ +.+.+ .|++|||
T Consensus 139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI 170 (171)
T d1h2ba1 139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI 170 (171)
T ss_dssp CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence 99998998989999999996 56777 8999998
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7e-35 Score=243.00 Aligned_cols=174 Identities=21% Similarity=0.321 Sum_probs=146.7
Q ss_pred hhhhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC---
Q 016933 8 ILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS--- 84 (380)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~--- 84 (380)
+++|||+++.++++|++++++++|+|++|||||||.++|||++|+++++|.++..++|+++|||++|+|+++|++++
T Consensus 2 ~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~ 81 (184)
T d1vj0a1 2 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLN 81 (184)
T ss_dssp CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTT
T ss_pred CceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccccc
Confidence 56799999999999999999999999999999999999999999999999887778999999999999999999986
Q ss_pred --CCCCCCEEEecCccCCCCCccccCCCc-CCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEe-ccc
Q 016933 85 --DLEVGDHVLPVFTGECGDCRHCRSDVS-NMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVH-SGC 160 (380)
Q Consensus 85 --~~~~GdrV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~-~~~ 160 (380)
++++||||++.+..+|++|.+|+.|.+ +.|.+.... |+.. +...+ ..-+|+|+||+.++ +.+
T Consensus 82 ~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~---G~~~--~~~~~---------~~~~Gg~ae~~~v~~~~~ 147 (184)
T d1vj0a1 82 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY---GINR--GCSEY---------PHLRGCYSSHIVLDPETD 147 (184)
T ss_dssp SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEET---TTTC--CSSST---------TCCCSSSBSEEEECTTCC
T ss_pred cccccceeeeEeccccccccChhHhCccccccCCCceee---ccCC--CCCCC---------CCcceeCcCcEEechhHc
Confidence 468999999999999999999999985 568877665 4320 00000 01146999999996 579
Q ss_pred eEeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 161 VAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 161 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
++++|+++++++ ++++|+++ .+.+.+++|++|||+
T Consensus 148 v~~ip~~l~~~~------pl~~A~~a-~~~~~~~~G~~VlI~ 182 (184)
T d1vj0a1 148 VLKVSEKITHRL------PLKEANKA-LELMESREALKVILY 182 (184)
T ss_dssp EEEECTTCCEEE------EGGGHHHH-HHHHHHTSCSCEEEE
T ss_pred EEECCCCCCHHH------HHHHHHHH-HHHhCCCcCCEEEEe
Confidence 999999998764 34577777 467889999999997
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-34 Score=241.16 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=150.9
Q ss_pred chhhhhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 6 GLILTCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 6 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
++|.||||+++.+++.. +++++.+.++++++|||||++++|||++|++++.|..+...+|+++|||++|+|+++|+++
T Consensus 2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v 81 (192)
T d1piwa1 2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS 81 (192)
T ss_dssp CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence 35999999999877765 7788887777899999999999999999999999988778899999999999999999987
Q ss_pred -CCCCCCCEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccce
Q 016933 84 -SDLEVGDHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCV 161 (380)
Q Consensus 84 -~~~~~GdrV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~ 161 (380)
+.+++||||.+.+ ...|+.|.+|+.+++++|.+......... .. + ...+|+||||++++.+++
T Consensus 82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~--~~---G----------~~~~Ggfaey~~v~~~~~ 146 (192)
T d1piwa1 82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY--ED---G----------YVSQGGYANYVRVHEHFV 146 (192)
T ss_dssp CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBC--TT---S----------CBCCCSSBSEEEEEGGGE
T ss_pred ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccccc--cc---c----------cccccceeeEEEeehHHe
Confidence 6699999997665 45799999999999999998765411000 00 1 122469999999999999
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+++|++++++.|+.+.+.+.|||+++ +.+++++|++|||.
T Consensus 147 ~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~ 186 (192)
T d1piwa1 147 VPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY 186 (192)
T ss_dssp EECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence 99999999988766554567999985 67999999999974
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-34 Score=241.46 Aligned_cols=170 Identities=19% Similarity=0.274 Sum_probs=148.3
Q ss_pred hhhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC---CCCCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG---QTPLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~---~~~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+++|+++..+++ ++++++++|+|+++||||||.++|||++|++++++.. ...++|+++|||++|+|+++|+++++|
T Consensus 7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~ 85 (185)
T d1pl8a1 7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL 85 (185)
T ss_dssp CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence 578999999886 9999999999999999999999999999999987643 235678999999999999999999999
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||||++.+..+|+.|++|++|.+++|.+..+. |.... .|+|+||++++.++++++|+
T Consensus 86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~---g~~~~------------------~G~~aey~~~~~~~~~~lP~ 144 (185)
T d1pl8a1 86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC---ATPPD------------------DGNLCRFYKHNAAFCYKLPD 144 (185)
T ss_dssp CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET---TBTTB------------------CCSCBSEEEEEGGGEEECCT
T ss_pred cccccceecceeccccchhhccchhchhccceee---ecccc------------------cccceEEEEEchHHEEECCC
Confidence 9999999999999999999999999999988776 43322 25899999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCC
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLG 205 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g 205 (380)
++++++++.++ +.+|+++ ++..++++|++||| |+|
T Consensus 145 ~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~G 179 (185)
T d1pl8a1 145 NVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCD 179 (185)
T ss_dssp TCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECC
T ss_pred CCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeC
Confidence 99999887654 4567777 46678899999998 444
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3.6e-36 Score=254.90 Aligned_cols=191 Identities=21% Similarity=0.267 Sum_probs=156.0
Q ss_pred hhhhhhccCCCCeEEEEeecCCC-------CCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPP-------QAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGV 83 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~-------~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v 83 (380)
+||++++++++ +++++++.|++ +++||||||.+++||++|++++.|..+ ..+|+++|||++|+|+++|+++
T Consensus 2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V 79 (201)
T d1kola1 2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDV 79 (201)
T ss_dssp EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccccc
Confidence 58999999987 99999999865 469999999999999999999998665 4689999999999999999999
Q ss_pred CCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec--cce
Q 016933 84 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS--GCV 161 (380)
Q Consensus 84 ~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~--~~~ 161 (380)
++|++||||++.+..+|+.|++|++++++.|.........|... +...+ .-.|+|+||+++|. .++
T Consensus 80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g------~~~~~------~~~Gg~aeyv~vp~~~~~l 147 (201)
T d1kola1 80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYG------YVDMG------DWTGGQAEYVLVPYADFNL 147 (201)
T ss_dssp CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBT------CTTSC------CBCCCSBSEEEESSHHHHC
T ss_pred ccccccceeEEeeeeeccCChhhhCCCccccccccccccccccc------ccCCC------ccccccccEEEeehHHCeE
Confidence 99999999999999999999999999999997765442222111 10000 11369999999985 379
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA 220 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~ 220 (380)
++|||+.++.+++++..++.++++++ .....+.+ ++|+|++|++++|+||.+|+
T Consensus 148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA 201 (201)
T d1kola1 148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA 201 (201)
T ss_dssp EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence 99999887778888888888888874 34444333 35889999999999999886
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=100.00 E-value=2.2e-35 Score=244.90 Aligned_cols=171 Identities=19% Similarity=0.136 Sum_probs=140.9
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||+++.++++ ++++++|.|.|+++|||||++++|||++|++.+.+......+|+++|||++|+|+++|+++++|++||
T Consensus 1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd 79 (177)
T d1jqba1 1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD 79 (177)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence 89999999987 99999999999999999999999999999988776566667899999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEec--cceEeCCCCC
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHS--GCVAKINPLA 168 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~--~~~~~~p~~~ 168 (380)
||++.+..+|++|.+|+++.++.|.+....-.+|. ..+|+|+||+.+|. .+++++|+++
T Consensus 80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~-------------------~~~G~~aEy~~vp~a~~~l~~iP~~~ 140 (177)
T d1jqba1 80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSN-------------------FKDGVFGEYFHVNDADMNLAILPKDV 140 (177)
T ss_dssp EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTT-------------------TBCCSSBSSEEESSHHHHCEECCTTS
T ss_pred cEEEeeeeccccccchhhhhhcccccccccccccC-------------------CCChhcCeeEEEEhhhCeEEECCCCc
Confidence 99999999999999999999999987754322221 12369999999986 4799999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHH
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAA 212 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai 212 (380)
++++++...+ +++..+ ++.+||+|+|.+|++++
T Consensus 141 ~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~aa 173 (177)
T d1jqba1 141 DLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIKA 173 (177)
T ss_dssp CGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred chHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhee
Confidence 9887654332 233221 34477778777776543
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.98 E-value=9e-33 Score=230.64 Aligned_cols=167 Identities=26% Similarity=0.397 Sum_probs=141.8
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC--------CCCCCCccccccccEEEEEeCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG--------QTPLFPRIFGHEAAGVVESVGEG 82 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~--------~~~~~p~v~G~e~vG~V~~vG~~ 82 (380)
|||+++.++|+||+++++++|+|+++|||||+.++|||++|+++++|.. ...++|+++|||++|+|+++|+.
T Consensus 1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~ 80 (177)
T d1jvba1 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (177)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence 8999999999999999999999999999999999999999999998853 23578999999999999999999
Q ss_pred CCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEecc-ce
Q 016933 83 VSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSG-CV 161 (380)
Q Consensus 83 v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~-~~ 161 (380)
+++|++||||++.+...|+.|.+|+.++++.|++.... |+. ..|+||||+.++.. .+
T Consensus 81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~---g~~-------------------~~G~~aey~~vp~~~~~ 138 (177)
T d1jvba1 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL---GIN-------------------FDGAYAEYVIVPHYKYM 138 (177)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB---TTT-------------------BCCSSBSEEEESCGGGE
T ss_pred ccccccCceEeeeeccccccccccccccccccCCccee---eec-------------------cccccccEEEEEhHHeE
Confidence 99999999999999999999999999999999987765 432 13699999999765 46
Q ss_pred EeCCCCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEE
Q 016933 162 AKINPLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAV 201 (380)
Q Consensus 162 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI 201 (380)
+++|+..+.+.|+.+..++.++++++ ..+++ .|++|||
T Consensus 139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI 176 (177)
T d1jvba1 139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI 176 (177)
T ss_dssp EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence 66666555444444456788889885 55655 5889987
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=4.2e-32 Score=225.39 Aligned_cols=168 Identities=30% Similarity=0.430 Sum_probs=143.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCC-CCCCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKG-QTPLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~-~~~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||++++++++|+++++++.|+|++|||||||+++|||++|++++.+.. ....+|.++|||++|+|+++|++++++++|
T Consensus 1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG 80 (171)
T d1rjwa1 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (171)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence 8999999999999999999999999999999999999999999887643 456789999999999999999999999999
Q ss_pred CEEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCC
Q 016933 90 DHVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLA 168 (380)
Q Consensus 90 drV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~ 168 (380)
|||++.+ ...|+.|..|+.+.+++|.+.... |.. .+|+|+||+++++++++++|+++
T Consensus 81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~-------------------~~G~~aey~~v~~~~~~~iP~~~ 138 (171)
T d1rjwa1 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA---GYS-------------------VDGGYAEYCRAAADYVVKIPDNT 138 (171)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB---TTT-------------------BCCSSBSEEEEEGGGCEECCTTC
T ss_pred eEEeeccccccccccccccCCCcccccccccc---cee-------------------ccCccccceEecHHHEEECCCCC
Confidence 9998765 456889999999999999887765 432 13699999999999999999999
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL 204 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~ 204 (380)
+++.|+ +. .+.++++.+. .+.+ +|++|||+|.
T Consensus 139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~ 170 (171)
T d1rjwa1 139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED 170 (171)
T ss_dssp CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence 886654 44 4566776643 3555 5999999984
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.4e-32 Score=223.50 Aligned_cols=166 Identities=24% Similarity=0.329 Sum_probs=134.3
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
|||++.+.+++||+++++++|+|++||||||+.++|||++|++++.|......+|+++|||++|+|+++|+++++|++||
T Consensus 1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd 80 (179)
T d1uufa1 1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD 80 (179)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence 79999999999999999999999999999999999999999999999877778999999999999999999999999999
Q ss_pred EEEecC-ccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 91 HVLPVF-TGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 91 rV~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
||.+.+ ..+|+.|++|++|++++|.+.... ..+..... .....|+|+||+.+++++++++|+...
T Consensus 81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~-------------~~~~~GgfaEy~~v~~~~~~~ip~~~~ 146 (179)
T d1uufa1 81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDE-------------PGHTLGGYSQQIVVHERYVLRIRVADI 146 (179)
T ss_dssp EEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSST-------------TSBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred EEEEcccccccCccccccCcccccCCCcccc-ccccCCCC-------------CcccccccceEEEechHHEEECCCCCc
Confidence 997665 568999999999999999986542 00111000 011236999999999999999997654
Q ss_pred ccchhhcchhhhhhhhhhhhccCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPE 194 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~ 194 (380)
....+ .++.++++++ .++.++
T Consensus 147 ~~~~a---~~l~~a~~a~-~~a~v~ 167 (179)
T d1uufa1 147 EMIRA---DQINEAYERM-LRGDVK 167 (179)
T ss_dssp EEECG---GGHHHHHHHH-HTTCSS
T ss_pred ChhHh---chhHHHHHHH-HHhCcc
Confidence 33222 2456777774 334443
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.8e-30 Score=207.98 Aligned_cols=145 Identities=22% Similarity=0.322 Sum_probs=130.6
Q ss_pred hhhhhhhccCCCC--eEEE-EeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCC
Q 016933 10 TCKAAVAWEAGKP--LIIQ-DVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSD 85 (380)
Q Consensus 10 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~ 85 (380)
.|||++++++|+| ++++ +++.|+|++|||||||.+++||++|+..+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus 2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (150)
T d1yb5a1 2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 81 (150)
T ss_dssp EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence 4899999998887 7774 68999999999999999999999999999886654 578999999999999999999999
Q ss_pred CCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCC
Q 016933 86 LEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKIN 165 (380)
Q Consensus 86 ~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p 165 (380)
|++||||++... .+|+|+||++++.++++++|
T Consensus 82 ~~vGdrV~~~~~------------------------------------------------~~G~~ae~~~v~~~~~~~iP 113 (150)
T d1yb5a1 82 FKKGDRVFTSST------------------------------------------------ISGGYAEYALAADHTVYKLP 113 (150)
T ss_dssp CCTTCEEEESCC------------------------------------------------SSCSSBSEEEEEGGGEEECC
T ss_pred cccCcccccccc------------------------------------------------cccccccccccccccccccc
Confidence 999999985421 13699999999999999999
Q ss_pred CCCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 166 PLAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 166 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+++++++||++++...|+|+++...+..+.|+++||+
T Consensus 114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL 150 (150)
T d1yb5a1 114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 150 (150)
T ss_dssp TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence 9999999999999999999998888889999999984
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.96 E-value=7.3e-29 Score=206.13 Aligned_cols=173 Identities=32% Similarity=0.515 Sum_probs=154.0
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++.|++++|++.|||+++++.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++++
T Consensus 1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~ 80 (174)
T d1f8fa2 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS 80 (174)
T ss_dssp SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence 35778999999999999999899999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccccc-ccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINV-LNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~ 326 (380)
++.+ +.+.+++++++++|+||||+|++..++.++++++++ |+++++|.........++...+ .+++++.|+.++.+
T Consensus 81 ~~~~--~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~ 157 (174)
T d1f8fa2 81 KTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSG 157 (174)
T ss_dssp TTSC--HHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred CCcC--HHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCC
Confidence 8766 899999999889999999999988999999999997 9999999865454555555444 49999999987777
Q ss_pred CCCCChHHHHHHHHcCC
Q 016933 327 KPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ 343 (380)
..+++++++++++++|+
T Consensus 158 ~~~~~~~~~~~l~~~Gk 174 (174)
T d1f8fa2 158 SPKKFIPELVRLYQQGK 174 (174)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 66677899999999885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.96 E-value=4.6e-28 Score=200.85 Aligned_cols=173 Identities=44% Similarity=0.775 Sum_probs=150.0
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+.+||.+.|++.|+|+++++.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++|+++
T Consensus 2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~ 81 (174)
T d1p0fa2 2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD 81 (174)
T ss_dssp CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence 56799999999999999888999999999999999999999999999999989999999999999999999999999877
Q ss_pred CCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCCC
Q 016933 250 HDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPR 329 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~ 329 (380)
.+....+..+..+++++|++||++|+...+..++..+.+++|+++++|.......+++++..+.++++|.|+.++.+..
T Consensus 82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~- 160 (174)
T d1p0fa2 82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKG- 160 (174)
T ss_dssp CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCCG-
T ss_pred chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCCH-
Confidence 6644555556666669999999999988899999888763489999998776777777665566889999998776543
Q ss_pred CChHHHHHHHHcCC
Q 016933 330 TDLPSVVDMYMNKQ 343 (380)
Q Consensus 330 ~~~~~~~~~~~~~~ 343 (380)
++++++++++++||
T Consensus 161 ~d~~~lidl~~~gK 174 (174)
T d1p0fa2 161 EEVSRLVDDYMKKK 174 (174)
T ss_dssp GGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 47999999999885
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.5e-28 Score=196.86 Aligned_cols=140 Identities=22% Similarity=0.293 Sum_probs=122.0
Q ss_pred hhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCCCCCCCC
Q 016933 13 AAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVSDLEVGD 90 (380)
Q Consensus 13 a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~~~~~Gd 90 (380)
.+.+.++|.| |++++++.|.|+++||||||++++||++|+.+++|.++...+|.++|||++|+|+++|+++++|++||
T Consensus 3 ~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGd 82 (147)
T d1qora1 3 RIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGD 82 (147)
T ss_dssp EEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTC
T ss_pred EEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeecccccccc
Confidence 4667888887 99999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred EEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCCc
Q 016933 91 HVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPL 170 (380)
Q Consensus 91 rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~~ 170 (380)
||+... .+.|+|+||+.++.+.++++|+++++
T Consensus 83 rV~~~~------------------------------------------------~~~G~~ae~~~v~~~~~~~~P~~~~~ 114 (147)
T d1qora1 83 RVVYAQ------------------------------------------------SALGAYSSVHNIIADKAAILPAAIKV 114 (147)
T ss_dssp EEEESC------------------------------------------------CSSCCSBSEEEEEGGGEEECCTTSCC
T ss_pred eeeeec------------------------------------------------cccccceeEEEEehHHeEEcCcccch
Confidence 997431 12369999999999999999999988
Q ss_pred cchh--hcchhhhhhhhhhhhccCCCCCCeEEE
Q 016933 171 DKVC--ILSCGVSTGLGATLNVAKPERGSSVAV 201 (380)
Q Consensus 171 ~~aa--~l~~~~~ta~~~l~~~~~~~~g~~vlI 201 (380)
+.++ ++++...++++++.+ .++++|++|||
T Consensus 115 ~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI 146 (147)
T d1qora1 115 DVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI 146 (147)
T ss_dssp CCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence 7554 456667777777654 67999999998
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=99.95 E-value=1.1e-27 Score=198.11 Aligned_cols=173 Identities=44% Similarity=0.845 Sum_probs=148.0
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||.+.|++.|+|+++.+.+++++|++|||+|+|++|++++|+||.+|+.+|++++.+++|+++++++|+++++++.
T Consensus 2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~ 81 (174)
T d1e3ia2 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR 81 (174)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence 46789999999999999988899999999999999999999999999999998999999999999999999999999876
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
..+....+..+...++++|++|||+|++..++.++++++++.|+++++|...+. ..++...+..+++|.|+.++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~--~~i~~~~~~~~k~i~Gs~~Gs~~~ 159 (174)
T d1e3ia2 82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE--MTIPTVDVILGRSINGTFFGGWKS 159 (174)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSE--EEEEHHHHHTTCEEEECSGGGCCH
T ss_pred cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCc--cccchHHHhccCEEEEEEeeCCCh
Confidence 655445555656666699999999999999999999999933999999987533 333344445677899998887777
Q ss_pred CCChHHHHHHHHcCC
Q 016933 329 RTDLPSVVDMYMNKQ 343 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~ 343 (380)
.+++.++++++++||
T Consensus 160 ~~d~p~li~l~~~GK 174 (174)
T d1e3ia2 160 VDSVPNLVSDYKNKK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 778889999998875
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=4e-28 Score=190.57 Aligned_cols=130 Identities=22% Similarity=0.197 Sum_probs=117.1
Q ss_pred hhhhhhccCCCCeEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCCCC
Q 016933 11 CKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLEVG 89 (380)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~~G 89 (380)
|||+++.++|+++++++++.|.|+++|||||++++|||++|+..+.|.++. ..+|+++|||++|+| +|
T Consensus 1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG 69 (131)
T d1iz0a1 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG 69 (131)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence 899999999999999999999999999999999999999999999987654 579999999999999 39
Q ss_pred CEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCCCC
Q 016933 90 DHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAP 169 (380)
Q Consensus 90 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~~~ 169 (380)
|||+... .+|+|+||+.++++.++++|++++
T Consensus 70 d~V~~~~-------------------------------------------------~~G~~aey~~v~~~~~~~~P~~~~ 100 (131)
T d1iz0a1 70 RRYAALV-------------------------------------------------PQGGLAERVAVPKGALLPLPEGRP 100 (131)
T ss_dssp EEEEEEC-------------------------------------------------SSCCSBSEEEEEGGGCEECCTTCC
T ss_pred ceEEEEe-------------------------------------------------ccCccceeeeeCHHHeEEccCCCC
Confidence 9998542 136999999999999999999999
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEE
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVF 202 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~ 202 (380)
+++||++++.+.|||++|.+++ +.|++||++
T Consensus 101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l 131 (131)
T d1iz0a1 101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL 131 (131)
T ss_dssp CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence 9999999999999999987765 458998863
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.95 E-value=4.4e-27 Score=196.01 Aligned_cols=174 Identities=49% Similarity=0.824 Sum_probs=147.7
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||.++|++.|+|+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++.
T Consensus 2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~ 81 (176)
T d2fzwa2 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence 56889999999999999988889999999999999999999999999999988999999999999999999999999987
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC-ceeeccccccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD-AVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
+.+....+.++..+++++|++||++|....+..+..+++++ +.+++++..... .........+.++++|.|+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2fzwa2 82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence 65545667777777779999999999988889999999996 787776544333 3333334445688999999888777
Q ss_pred CCCChHHHHHHHHcCC
Q 016933 328 PRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (380)
..+++.++++++++||
T Consensus 161 ~~~d~~~li~l~~~GK 176 (176)
T d2fzwa2 161 SVESVPKLVSEYMSKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6778899999998885
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=7.3e-28 Score=195.12 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=124.3
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCC-CCCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQ-TPLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~-~~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+++++ ++++++++|+|++|||||||.++|||++|++.+.|.++ ....|+++|+|++|+|++ +.++.|+
T Consensus 4 ~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~~ 81 (152)
T d1xa0a1 4 FQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRFR 81 (152)
T ss_dssp EEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSCC
T ss_pred eEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCccc
Confidence 999999999987 55889999999999999999999999999999888765 357899999999999999 5567899
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|+...... + ...+|+||||+++|.+.++++|++
T Consensus 82 ~g~~v~~~~~~~------------------------~-------------------~~~~G~~aEy~~v~~~~~~~iP~~ 118 (152)
T d1xa0a1 82 EGDEVIATGYEI------------------------G-------------------VTHFGGYSEYARLHGEWLVPLPKG 118 (152)
T ss_dssp TTCEEEEESTTB------------------------T-------------------TTBCCSSBSEEEECGGGCEECCTT
T ss_pred cCCEEEEecCcc------------------------c-------------------cccCCCcceeeeehhhccccCCCC
Confidence 999998542110 0 111369999999999999999999
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEc
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFG 203 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G 203 (380)
++ ++||+++++..|+|.++....+++ |++|||+|
T Consensus 119 l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~ 152 (152)
T d1xa0a1 119 LE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA 152 (152)
T ss_dssp HH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred CC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence 97 578889999999998888888886 99999975
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.94 E-value=7.1e-27 Score=193.54 Aligned_cols=170 Identities=31% Similarity=0.510 Sum_probs=145.7
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+|+++|+.++++++|+|+++ +.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++++
T Consensus 1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~ 79 (174)
T d1jqba2 1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY 79 (174)
T ss_dssp SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence 47889999999999999994 77999999999999999999999999999999889999999999999999999999998
Q ss_pred CCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc---cccccEEEeeee
Q 016933 248 SEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN---VLNERTLKGTFF 323 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~~~~~~i~g~~~ 323 (380)
++.+ +.+.+.+++++ ++|++|||+|++..+++++++++++ |+++++|.......+.++... +++++++.++..
T Consensus 80 ~~~~--~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 156 (174)
T d1jqba2 80 KNGH--IEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 156 (174)
T ss_dssp GGSC--HHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCC
T ss_pred cchh--HHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecC
Confidence 8766 88999999988 8999999999988899999999997 999999987655555544433 347788988765
Q ss_pred cCCCCCCChHHHHHHHHcCC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (380)
+.. +..+++++++++.|+
T Consensus 157 ~~~--r~~~e~l~~li~~gk 174 (174)
T d1jqba2 157 PGG--RLRAERLRDMVVYNR 174 (174)
T ss_dssp CCH--HHHHHHHHHHHHTTS
T ss_pred CCC--cccHHHHHHHHHcCC
Confidence 443 234567778887764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7.9e-27 Score=193.90 Aligned_cols=166 Identities=21% Similarity=0.290 Sum_probs=142.3
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+|+++||++++++.|||++|.+.+++++|++|||+|+ |++|++++|+||.+|+ +|++++++++|.++++++|+++++|
T Consensus 1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~ 79 (174)
T d1yb5a2 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN 79 (174)
T ss_dssp SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence 5789999999999999999988899999999999996 9999999999999999 8999989999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
+++.+ +.+.+++.+++ ++|++||++|+ +.++.++++++++ |+++.+|... .. ++++.. +.+++++.|+.++
T Consensus 80 ~~~~~--~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~-~~--~~~~~~~~~k~~~i~g~~~~ 152 (174)
T d1yb5a2 80 HREVN--YIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRG-TI--EINPRDTMAKESSIIGVTLF 152 (174)
T ss_dssp TTSTT--HHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCS-CE--EECTHHHHTTTCEEEECCGG
T ss_pred ccccc--HHHHhhhhhccCCceEEeecccH-HHHHHHHhccCCC-CEEEEEecCC-CC--CCCHHHHHHCCCEEEEEEec
Confidence 98876 99999999888 89999999997 7899999999997 9999999754 33 333332 4489999998765
Q ss_pred CCCCCCChHHHHHHHHcC
Q 016933 325 NYKPRTDLPSVVDMYMNK 342 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (380)
.. ..+++++++++++++
T Consensus 153 ~~-~~~~~~~~~~~l~~g 169 (174)
T d1yb5a2 153 SS-TKEEFQQYAAALQAG 169 (174)
T ss_dssp GC-CHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHH
Confidence 43 234577777776654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.94 E-value=2.2e-26 Score=191.64 Aligned_cols=175 Identities=46% Similarity=0.873 Sum_probs=146.3
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||.++|++.|+|+++.+.+++++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++.
T Consensus 2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~ 81 (176)
T d2jhfa2 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence 56889999999999999998999999999999999999999999999999988999999999999999999999999876
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+....+.++...++++|++||++|.+..+..++..++.++|.++..+..............+.+++++.|+.++++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~ 161 (176)
T d2jhfa2 82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKS 161 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCH
T ss_pred CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCCH
Confidence 65444555566666669999999999988899999999996345555555443444444445566999999998887777
Q ss_pred CCChHHHHHHHHcCC
Q 016933 329 RTDLPSVVDMYMNKQ 343 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~ 343 (380)
++++.++++++++||
T Consensus 162 ~~~~~~li~~~~~GK 176 (176)
T d2jhfa2 162 KDSVPKLVADFMAKK 176 (176)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 778999999998875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=4.1e-27 Score=197.47 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=146.5
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
+|||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++++++++.++++++|+++++++++
T Consensus 1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~ 79 (183)
T d1pqwa_ 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS 79 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence 5799999999999999989999999999999986 9999999999999999 8888889999999999999999999887
Q ss_pred CCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC-
Q 016933 250 HDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK- 327 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~- 327 (380)
.+ +.+.+++.+++ ++|++||++|+ +.++.++++++++ |+++.+|..............+.+++++.++......
T Consensus 80 ~~--~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T d1pqwa_ 80 VD--FADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK 155 (183)
T ss_dssp ST--HHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred cC--HHHHHHHHhCCCCEEEEEecccc-hHHHHHHHHhcCC-CEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence 76 99999999987 99999999998 7899999999997 9999999765443333334445688888876543211
Q ss_pred -----CCCChHHHHHHHHcCCCCCCC
Q 016933 328 -----PRTDLPSVVDMYMNKQLELEK 348 (380)
Q Consensus 328 -----~~~~~~~~~~~~~~~~~~~~~ 348 (380)
.++.++++++++++|++++.|
T Consensus 156 ~~~~~~~~~~~~v~~~i~~G~i~p~P 181 (183)
T d1pqwa_ 156 LQPARYRQLLQHILQHVADGKLEVLP 181 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred cCHHHHHHHHHHHHHHHHCCCCceeC
Confidence 124578888999999887754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.94 E-value=1.4e-26 Score=192.17 Aligned_cols=172 Identities=37% Similarity=0.701 Sum_probs=147.6
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+|+.+|+.+||+++.+++|+++++++|+++++|+.
T Consensus 3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~ 82 (176)
T d1d1ta2 3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 82 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence 57899999999999999988889999999999999999999999999999988999999999999999999999999987
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
+.+. +.+.+.+.+.+ ++|+++|++|.+..+..++..+..++|+++++|.........+++..+.+++++.|+.++...
T Consensus 83 ~~~~-~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 161 (176)
T d1d1ta2 83 DSTK-PISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLK 161 (176)
T ss_dssp GCSS-CHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred ccch-HHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeCCC
Confidence 6543 34445555555 999999999998888888887766459999999887666677766666688999999888777
Q ss_pred CCCChHHHHHHHHc
Q 016933 328 PRTDLPSVVDMYMN 341 (380)
Q Consensus 328 ~~~~~~~~~~~~~~ 341 (380)
+++++.++++++.+
T Consensus 162 ~~~dip~li~~~~~ 175 (176)
T d1d1ta2 162 SRDDVPKLVTEFLA 175 (176)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhC
Confidence 77788888887654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=3e-26 Score=191.80 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=144.5
Q ss_pred ccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSE 249 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~ 249 (380)
++.+|.+.|+.+|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++.+
T Consensus 3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~ 82 (182)
T d1vj0a2 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE 82 (182)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence 46788899999999999888889999999999999999999999999999988999999999999999999999999987
Q ss_pred CC-ccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc--ccccccEEEeeeecC
Q 016933 250 HD-RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI--NVLNERTLKGTFFGN 325 (380)
Q Consensus 250 ~~-~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~~i~g~~~~~ 325 (380)
.+ .++.+.+.+.+.+ ++|+||||+|++..++.++++++++ |+++++|...+...+.+... .+.|++++.|++.+.
T Consensus 83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~ 161 (182)
T d1vj0a2 83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD 161 (182)
T ss_dssp SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence 65 3355667777877 8999999999988899999999997 99999998765556665543 345899999987543
Q ss_pred CCCCCChHHHHHHHHcC
Q 016933 326 YKPRTDLPSVVDMYMNK 342 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (380)
.+++++++++++++
T Consensus 162 ---~~~~~~~~~~i~~~ 175 (182)
T d1vj0a2 162 ---TSHFVKTVSITSRN 175 (182)
T ss_dssp ---HHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHC
Confidence 24577888887765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.93 E-value=1.4e-25 Score=186.53 Aligned_cols=174 Identities=53% Similarity=0.924 Sum_probs=142.6
Q ss_pred CccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 169 PLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 169 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++++||.+.|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|+.+|++++++++|+++++++|+++++|+.
T Consensus 2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~ 81 (175)
T d1cdoa2 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN 81 (175)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence 57889999999999999988899999999999999999999999999999998999999999999999999999999987
Q ss_pred CCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCCC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKP 328 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 328 (380)
+.+....+..+...++++|+++|++|+...+..++.++.++++.++..|... ..........+.+++++.|+.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~-~~~~~~~~~~~~~~~~i~Gs~~G~~~~ 160 (175)
T d1cdoa2 82 DHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD-LHDVATRPIQLIAGRTWKGSMFGGFKG 160 (175)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS-SSCEEECHHHHHTTCEEEECSGGGCCH
T ss_pred CcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC-CcccCccHHHHHCCcEEEEEEEeCCcH
Confidence 6543233334444445999999999998888999998888634455555544 333333344456889999998887776
Q ss_pred CCChHHHHHHHHcCC
Q 016933 329 RTDLPSVVDMYMNKQ 343 (380)
Q Consensus 329 ~~~~~~~~~~~~~~~ 343 (380)
++++.++++++++||
T Consensus 161 ~~d~~~~i~l~~~gK 175 (175)
T d1cdoa2 161 KDGVPKMVKAYLDKK 175 (175)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 778999999998875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=5.6e-26 Score=188.03 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=146.6
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++.+||+++|++.|||+++ +..++++|++|||+|+ |++|++++|+++..|+.+|++++++++|+++++++|++++++
T Consensus 1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~ 79 (170)
T d1jvba2 1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN 79 (170)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence 57899999999999999995 6789999999999996 999999999999999779999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
+++.+ +.+.+++.+.+ ++|++|||+|++..++.++++++++ |+++++|....+..++... .+.+++++.|++.+.
T Consensus 80 ~~~~~--~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~~k~i~i~Gs~~~~ 155 (170)
T d1jvba2 80 ASMQD--PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADLHYHAPL-ITLSEIQFVGSLVGN 155 (170)
T ss_dssp TTTSC--HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCCCCCHHH-HHHHTCEEEECCSCC
T ss_pred cCCcC--HHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccCccccCHHH-HHhCCcEEEEEecCC
Confidence 88766 88888888877 8999999999988899999999997 9999999876554444333 245999999987653
Q ss_pred CCCCCChHHHHHHHHcCC
Q 016933 326 YKPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ 343 (380)
.++++++++++++||
T Consensus 156 ---~~d~~~~l~lv~~GK 170 (170)
T d1jvba2 156 ---QSDFLGIMRLAEAGK 170 (170)
T ss_dssp ---HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHHHcCC
Confidence 356999999999885
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.1e-25 Score=187.96 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=121.1
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+|+++||+++++++|||++|.+.+++++|++|||+|+ |++|++++|+||..|+ +|++++++++|+++++++|+++++|
T Consensus 1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence 5889999999999999999988899999999999976 8899999999999999 9999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD 302 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~ 302 (380)
+++.+ +.+.+++++++ ++|+++|++|+ +.+..++++++++ |+++.++.....
T Consensus 80 ~~~~d--~~~~v~~~t~g~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~ 132 (179)
T d1qora2 80 YREED--LVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFGNSSGA 132 (179)
T ss_dssp TTTSC--HHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEE-EEEEECCCTTCC
T ss_pred CCCCC--HHHHHHHHhCCCCeEEEEeCccH-HHHHHHHHHHhcC-CeeeecccccCC
Confidence 98876 99999999988 99999999987 7899999999997 999999876533
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.7e-25 Score=181.20 Aligned_cols=170 Identities=22% Similarity=0.345 Sum_probs=139.7
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+|+++||.+ .++++||++ .+++++++|++|+|+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++
T Consensus 1 vS~e~Aal~-epla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~ 78 (171)
T d1pl8a2 1 VTFEEGALI-EPLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 78 (171)
T ss_dssp SCHHHHHHH-HHHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHH-HHHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence 467888765 488999999 467899999999999999999999999999999889999999999999999999999988
Q ss_pred CCCCcc-HHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCC
Q 016933 248 SEHDRP-IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 326 (380)
++.+.. ..+.+....+.++|++|||+|++..++.++++++++ |+++++|.......++... .+.|++++.|++.
T Consensus 79 ~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~~~~~~~~~-~~~k~l~i~Gs~~--- 153 (171)
T d1pl8a2 79 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSEMTTVPLLH-AAIREVDIKGVFR--- 153 (171)
T ss_dssp SSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCSCCCCCHHH-HHHTTCEEEECCS---
T ss_pred cccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCCCCCccCHHH-HHHCCcEEEEEeC---
Confidence 776522 223333334448999999999988999999999997 9999999876444444322 2459999999853
Q ss_pred CCCCChHHHHHHHHcCCCC
Q 016933 327 KPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~ 345 (380)
..++++++++++++|+++
T Consensus 154 -~~~~~~~al~li~~gkid 171 (171)
T d1pl8a2 154 -YCNTWPVAISMLASKSVN 171 (171)
T ss_dssp -CSSCHHHHHHHHHTTSCC
T ss_pred -CHhHHHHHHHHHHcCCCC
Confidence 235799999999999863
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=8.2e-26 Score=186.37 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=130.7
Q ss_pred CCccchhhcchhhhhhhhhh---hhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGAT---LNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+|+++||+++++++|||.++ .+....++|++|||+|+ |++|.+++|+||.+|+ +|+++.+++++.++++++|+++
T Consensus 1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~ 79 (176)
T d1xa0a2 1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE 79 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence 57899999999999999664 45688899999999986 9999999999999999 8999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 322 (380)
++|+++. +.+.++...++++|+|||++|+ +.+..++++|+++ |+++.+|...+ ....++... +.|++++.|..
T Consensus 80 vi~~~~~---~~~~~~~~~~~gvD~vid~vgg-~~~~~~l~~l~~~-Griv~~G~~~g-~~~~~~~~~~~~k~~~i~Gv~ 153 (176)
T d1xa0a2 80 VLAREDV---MAERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGID 153 (176)
T ss_dssp EEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEECC
T ss_pred eeecchh---HHHHHHHhhccCcCEEEEcCCc-hhHHHHHHHhCCC-ceEEEeecccC-cccCCCHHHHHHCCcEEEEEe
Confidence 9998653 3344444445599999999998 7999999999997 99999998753 333343333 45999999964
Q ss_pred ecCCCCCCChHHHHHHHHcCCCCC
Q 016933 323 FGNYKPRTDLPSVVDMYMNKQLEL 346 (380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~ 346 (380)
.. ..+.++..++++.+. ++++|
T Consensus 154 ~~-~~~~~~~~~~~~~la-g~lkP 175 (176)
T d1xa0a2 154 SV-YCPMDLRLRIWERLA-GDLKP 175 (176)
T ss_dssp SS-SCCHHHHHHHHHHHH-TTTCC
T ss_pred CC-cCCHHHHHHHHHHHh-cccCC
Confidence 32 223344555666653 55544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=3.2e-25 Score=182.65 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=139.6
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++||+++|+++|||+++ +.+++++|++|+|+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++++
T Consensus 1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence 47899999999999999996 56899999999999999999999999999998 99999999999999999999999998
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
.+.+ +.+.+++.+. +.+.+++++++++.++.++++++++ |+++++|.......++... .+.+++++.|++.+.
T Consensus 79 ~~~~--~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~~k~~~i~Gs~~~~-- 151 (166)
T d1llua2 79 RQED--PVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPPGDFPTPIFD-VVLKGLHIAGSIVGT-- 151 (166)
T ss_dssp TTSC--HHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCSSEEEEEHHH-HHHTTCEEEECCSCC--
T ss_pred cchh--HHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecCCCccCCHHH-HHhCCcEEEEEeecC--
Confidence 8776 7777877665 4666777777779999999999997 9999999865433333322 245999999987543
Q ss_pred CCCChHHHHHHHHcC
Q 016933 328 PRTDLPSVVDMYMNK 342 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (380)
+++++++++++++|
T Consensus 152 -~~d~~e~l~l~~~G 165 (166)
T d1llua2 152 -RADLQEALDFAGEG 165 (166)
T ss_dssp -HHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHCc
Confidence 35689999998887
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.92 E-value=4.2e-25 Score=182.94 Aligned_cols=164 Identities=20% Similarity=0.318 Sum_probs=139.2
Q ss_pred ccchhhcchhhhhhhhhhhhcc-CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 170 LDKVCILSCGVSTGLGATLNVA-KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 170 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+.++|+++|+++|||+++.+.. .+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++++++
T Consensus 6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~ 85 (172)
T d1h2ba2 6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 85 (172)
T ss_dssp HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence 5788999999999999987655 489999999999999999999999999988999999999999999999999999987
Q ss_pred CCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCC
Q 016933 249 EHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNY 326 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~ 326 (380)
++ ..+.+.+.+.+ ++|++||++|+...++.++++++++ |+++++|... .. .++.. .+.++++|.|++.+.
T Consensus 86 ~~---~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~-~~--~~~~~~l~~k~~~i~Gs~~~~- 157 (172)
T d1h2ba2 86 RD---PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG-EL--RFPTIRVISSEVSFEGSLVGN- 157 (172)
T ss_dssp SC---HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS-CC--CCCHHHHHHTTCEEEECCSCC-
T ss_pred cc---HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc-cc--cCCHHHHHhCCcEEEEEEecC-
Confidence 65 44555666666 8999999999988899999999997 9999999754 33 33333 345999999997654
Q ss_pred CCCCChHHHHHHHHcCC
Q 016933 327 KPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ 343 (380)
.++++++++++++||
T Consensus 158 --~~d~~~~l~l~~~GK 172 (172)
T d1h2ba2 158 --YVELHELVTLALQGK 172 (172)
T ss_dssp --HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHHHcCC
Confidence 356899999998885
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.2e-25 Score=177.46 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=110.0
Q ss_pred hhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCCC
Q 016933 11 CKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDLE 87 (380)
Q Consensus 11 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~~ 87 (380)
|||+++.+++++ +++++++.|+|++|||||||.|+|||++|+....|.++. ..+|+++|+|++|+|+++|. ..|+
T Consensus 1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~ 78 (146)
T d1o89a1 1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH 78 (146)
T ss_dssp CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence 899999998887 778999999999999999999999999999999987653 57899999999999999876 4799
Q ss_pred CCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCCC
Q 016933 88 VGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPL 167 (380)
Q Consensus 88 ~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~~ 167 (380)
+||+|++..... |. ..+|+||||+.+|.++++++|++
T Consensus 79 ~g~~v~~~~~~~------------------------g~-------------------~~~G~~Aey~~v~~~~vv~lP~~ 115 (146)
T d1o89a1 79 AGQEVLLTGWGV------------------------GE-------------------NHWGGLAEQARVKGDWLVAMPQG 115 (146)
T ss_dssp TTCEEEEECTTB------------------------TT-------------------TBCCSSBSEEEECGGGCEECCTT
T ss_pred ceeeEEeecccc------------------------ee-------------------cCCCcceeeeeeeeeeEEECCCC
Confidence 999998652110 11 12469999999999999999999
Q ss_pred CCccchhhcchhhhhhhhh
Q 016933 168 APLDKVCILSCGVSTGLGA 186 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~ 186 (380)
+|+++||+++++..||+..
T Consensus 116 ls~~eAA~l~~a~~tA~~~ 134 (146)
T d1o89a1 116 QAAKEISLSEAPNFAEAII 134 (146)
T ss_dssp SCCEEECGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999888888654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.8e-25 Score=183.27 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=136.7
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
++++.||+++|+..|+|+++ +.+++++|++|||+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++++
T Consensus 1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~ 78 (168)
T d1piwa2 1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIAT 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEG
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeec
Confidence 35677899999999999996 56899999999999999999999999999999 89999999999999999999999987
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChh--hHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNID--NMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGN 325 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 325 (380)
.+.+ ++.+ ...+++|+++|++++.. .+..++++++++ |+++++|.......++.... +.++++|.|+..++
T Consensus 79 ~~~~-~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~k~~~i~Gs~~g~ 151 (168)
T d1piwa2 79 LEEG-DWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQHEMLSLKPY-GLKAVSISYSALGS 151 (168)
T ss_dssp GGTS-CHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCSSCCEEECGG-GCBSCEEEECCCCC
T ss_pred cchH-HHHH----hhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccccccccHHHH-HhCCcEEEEEeeCC
Confidence 6543 2322 23348999999988643 467899999997 99999998765555554443 45899999987654
Q ss_pred CCCCCChHHHHHHHHcCCCC
Q 016933 326 YKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~ 345 (380)
.++++++++++++|+++
T Consensus 152 ---~~~~~e~l~li~~gkIk 168 (168)
T d1piwa2 152 ---IKELNQLLKLVSEKDIK 168 (168)
T ss_dssp ---HHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHHHHHhCCCC
Confidence 45799999999999763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.92 E-value=4.6e-24 Score=176.41 Aligned_cols=166 Identities=25% Similarity=0.369 Sum_probs=135.8
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+|+++||.+ .++++||+++ +++++++|++|||+|+|++|++++|+||.+|+ +|++++++++|+++++++|++.+++.
T Consensus 1 VS~e~Aal~-ePla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 1 VSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp SCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHH-HHHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence 477888766 4788999994 77899999999999999999999999999999 89999999999999999999987766
Q ss_pred CCCCc---cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeee
Q 016933 248 SEHDR---PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFF 323 (380)
Q Consensus 248 ~~~~~---~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~ 323 (380)
+..+. ++.+.+.+..++++|++|||+|++..++.++++++++ |+++++|....... ++... +.+++++.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~--~~~~~~~~k~i~i~gs~~ 154 (170)
T d1e3ja2 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVT--VPLVNACAREIDIKSVFR 154 (170)
T ss_dssp CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSSCCC--CCHHHHHTTTCEEEECCS
T ss_pred cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCCCCCC--cCHHHHHHCCCEEEEEEC
Confidence 54332 3445555555569999999999988899999999997 99999998764333 33333 449999999753
Q ss_pred cCCCCCCChHHHHHHHHcCC
Q 016933 324 GNYKPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (380)
+.++++++++++++|+
T Consensus 155 ----~~~~~~~ai~li~~Gk 170 (170)
T d1e3ja2 155 ----YCNDYPIALEMVASGR 170 (170)
T ss_dssp ----CSSCHHHHHHHHHTTS
T ss_pred ----CHHHHHHHHHHHHcCC
Confidence 2357999999999885
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=1.3e-24 Score=179.33 Aligned_cols=168 Identities=25% Similarity=0.410 Sum_probs=142.5
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
+|+++||+++|++.|||+++ +..++++|++|||+|+|++|++++|+|+..|+ +|++++++++|+++++++|++.++++
T Consensus 1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~ 78 (168)
T d1rjwa2 1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence 57899999999999999995 57889999999999999999999999999999 89999999999999999999999998
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccccccccEEEeeeecCCC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYK 327 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 327 (380)
.+.+ +.+.+++.+.+..|+ ++++++...++.++++++++ |+++++|.......++... .+.+++++.|+..+.
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~-v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~~~~~~~~~~-~~~~~~~i~gs~~~~-- 151 (168)
T d1rjwa2 79 LKED--AAKFMKEKVGGVHAA-VVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEMPIPIFD-TVLNGIKIIGSIVGT-- 151 (168)
T ss_dssp TTSC--HHHHHHHHHSSEEEE-EESSCCHHHHHHHHHHEEEE-EEEEECCCCSSEEEEEHHH-HHHTTCEEEECCSCC--
T ss_pred ccch--hhhhcccccCCCceE-EeecCCHHHHHHHHHHhccC-CceEecccccCCCCCCHHH-HHHCCcEEEEEeeCC--
Confidence 8876 888888888764444 45666668999999999997 9999999876444444322 245999999987543
Q ss_pred CCCChHHHHHHHHcCCCC
Q 016933 328 PRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (380)
+++++++++++++|+++
T Consensus 152 -~~~~~~~l~l~~~Gkik 168 (168)
T d1rjwa2 152 -RKDLQEALQFAAEGKVK 168 (168)
T ss_dssp -HHHHHHHHHHHHTTSCC
T ss_pred -HHHHHHHHHHHHhCCCC
Confidence 45799999999999763
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.91 E-value=1.1e-24 Score=182.04 Aligned_cols=164 Identities=17% Similarity=0.205 Sum_probs=132.9
Q ss_pred hhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 174 CILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
+++.+++.|||++|.+.+++++|++|||+|+ |++|++++|+||..|+ +||++++++++.++++++|+++++++++.+
T Consensus 8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~- 85 (182)
T d1v3va2 8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKTVN- 85 (182)
T ss_dssp TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTSCS-
T ss_pred HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccccc-
Confidence 4678889999999999999999999999987 9999999999999999 999999999999999999999999988776
Q ss_pred cHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC-----ceeecccc-ccccccEEEeeeecC
Q 016933 253 PIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD-----AVFMTKPI-NVLNERTLKGTFFGN 325 (380)
Q Consensus 253 ~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~-~~~~~~~i~g~~~~~ 325 (380)
+.+.+.+.+.+ ++|+|||++|+ +.++.++++++++ |+++.+|..+.. ........ .+.+++++.|++...
T Consensus 86 -~~~~~~~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~ 162 (182)
T d1v3va2 86 -SLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR 162 (182)
T ss_dssp -CHHHHHHHHCTTCEEEEEESSCH-HHHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred -HHHHHHHHhhcCCCceeEEecCc-hhhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence 66777766666 99999999997 8899999999997 999999964321 11122222 234899999987655
Q ss_pred CCCC---CChHHHHHHHHcC
Q 016933 326 YKPR---TDLPSVVDMYMNK 342 (380)
Q Consensus 326 ~~~~---~~~~~~~~~~~~~ 342 (380)
+..+ +.++++++++++|
T Consensus 163 ~~~~~~~~~~~~l~~~i~~G 182 (182)
T d1v3va2 163 WQGDVREKALRDLMKWVLEG 182 (182)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHhCc
Confidence 4321 2356666666654
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.91 E-value=9.4e-27 Score=193.76 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=127.3
Q ss_pred hhhhhhhccCCCC---eE--EEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC----------CCCCccccccccE
Q 016933 10 TCKAAVAWEAGKP---LI--IQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT----------PLFPRIFGHEAAG 74 (380)
Q Consensus 10 ~~~a~~~~~~~~~---~~--~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~----------~~~p~v~G~e~vG 74 (380)
||||+++.++|+| ++ ..+++.|+|+++||||||++++||++|+++++|..+. ...|.++|+|++|
T Consensus 3 t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g 82 (175)
T d1gu7a1 3 TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLF 82 (175)
T ss_dssp EEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEE
T ss_pred eeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccccc
Confidence 5999999999987 44 4566677889999999999999999999998875432 3577899999999
Q ss_pred EEEEeCCCCCCCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEE
Q 016933 75 VVESVGEGVSDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYT 154 (380)
Q Consensus 75 ~V~~vG~~v~~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~ 154 (380)
+|+++|.++..++.||||..... ..|+|+||+
T Consensus 83 ~V~~~~~~~~~~~~g~~v~~~~~------------------------------------------------~~g~~aey~ 114 (175)
T d1gu7a1 83 EVIKVGSNVSSLEAGDWVIPSHV------------------------------------------------NFGTWRTHA 114 (175)
T ss_dssp EEEEECTTCCSCCTTCEEEESSS------------------------------------------------CCCCSBSEE
T ss_pred ccccccccccccccccceecccc------------------------------------------------cccccccee
Confidence 99999999999999999985421 135899999
Q ss_pred EEeccceEeCCCCCCccchhhcchhhhhhhhhhhh-ccCCCCCCeEEEEc-C-CHHHHHHHH
Q 016933 155 VVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLN-VAKPERGSSVAVFG-L-GAVGLAAAE 213 (380)
Q Consensus 155 ~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~vlI~G-~-g~~G~~ai~ 213 (380)
.+++++++++|++++.+. ++.+...|||+++.. ..++++|++|||+| + |++|++++|
T Consensus 115 ~v~~~~~~~iP~~~~~~~--a~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ 174 (175)
T d1gu7a1 115 LGNDDDFIKLPNPAQSKA--NGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174 (175)
T ss_dssp EEEGGGEEEECCHHHHHH--TTCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred eehhhhccCCCccchhhh--hccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence 999999999999875443 345577899988654 46799999999997 4 679988876
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=2.1e-26 Score=188.53 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=124.2
Q ss_pred hhhhhhhccCCCC--eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCC-CCCCccccccccEEEEEeCCCCCCC
Q 016933 10 TCKAAVAWEAGKP--LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQT-PLFPRIFGHEAAGVVESVGEGVSDL 86 (380)
Q Consensus 10 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~-~~~p~v~G~e~vG~V~~vG~~v~~~ 86 (380)
+|||+++.+++.+ ++++++++|+|++|||||||+|+|||++|+..+.|.++. ...|.++|+|++|+|++ +.++++
T Consensus 3 ~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~ 80 (162)
T d1tt7a1 3 LFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRF 80 (162)
T ss_dssp EEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTC
T ss_pred cEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--cccccc
Confidence 5899999877665 999999999999999999999999999999999887764 46789999999999998 456789
Q ss_pred CCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeCCC
Q 016933 87 EVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINP 166 (380)
Q Consensus 87 ~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~p~ 166 (380)
++||+|+...... | ...+|+|+||+.+|+++++++|+
T Consensus 81 ~~g~~v~~~~~~~------------------------g-------------------~~~~G~~aey~~v~~~~l~~iP~ 117 (162)
T d1tt7a1 81 AEGDEVIATSYEL------------------------G-------------------VSRDGGLSEYASVPGDWLVPLPQ 117 (162)
T ss_dssp CTTCEEEEESTTB------------------------T-------------------TTBCCSSBSSEEECGGGEEECCT
T ss_pred ccceeeEeeeccc------------------------e-------------------eccccccceEEEecHHHEEECCC
Confidence 9999998653210 1 11236999999999999999999
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL 204 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~ 204 (380)
++++++||.+++.++|||.++. ...+..+++|||.|+
T Consensus 118 ~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga 154 (162)
T d1tt7a1 118 NLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI 154 (162)
T ss_dssp TCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence 9999999999999999998753 334555577888776
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.2e-24 Score=179.41 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=131.8
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~ 247 (380)
.+++.+|+++|+..|+|+++ +.+++++|++|||+|+|++|++++|+||.+|+ ++++++++++|+++++++|+++++++
T Consensus 4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS 81 (168)
T ss_dssp GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence 35678888999999999996 67999999999999999999999999999999 77788899999999999999999998
Q ss_pred CCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeeecCC
Q 016933 248 SEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFFGNY 326 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~~~~ 326 (380)
.+.+ . .....+++|++||++|.+..++.++++++++ |+++++|..... ...+... .+.+++++.|+..+.
T Consensus 82 ~~~~--~----~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~l~~k~~~i~Gs~~~~- 152 (168)
T d1uufa2 82 RNAD--E----MAAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATP-HKSPEVFNLIMKRRAIAGSMIGG- 152 (168)
T ss_dssp TCHH--H----HHTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCC-
T ss_pred chhh--H----HHHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCCC-cccccHHHHHHCCcEEEEEeecC-
Confidence 7643 1 1112238999999999988899999999997 999999986532 3233333 345899999987544
Q ss_pred CCCCChHHHHHHHHcCCC
Q 016933 327 KPRTDLPSVVDMYMNKQL 344 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (380)
.+++++++++++++++
T Consensus 153 --~~d~~e~l~l~a~~~I 168 (168)
T d1uufa2 153 --IPETQEMLDFCAEHGI 168 (168)
T ss_dssp --HHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHcCC
Confidence 3568889998887653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.90 E-value=2.7e-24 Score=180.73 Aligned_cols=172 Identities=16% Similarity=0.213 Sum_probs=132.4
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEE-cC-CHHHHHHHHHHHHcCCcEEEEEcCCh----hHHHHHHhcCC
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVF-GL-GAVGLAAAEGARIAGASRIIGVDRSS----KRFEEAKKFGV 241 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~-G~-g~~G~~ai~la~~~g~~~vi~~~~~~----~~~~~~~~lG~ 241 (380)
+|+++||+++++++|||++|.+.+++++|++++|+ |+ |++|++++|+||.+|+ +||++.++. ++.+.++++|+
T Consensus 1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa 79 (189)
T d1gu7a2 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA 79 (189)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence 57899999999999999999889999999999997 55 9999999999999999 777775543 45677899999
Q ss_pred ceEecCCCCC-ccHHHHHHHHh---CCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-ccccc
Q 016933 242 TDFVNTSEHD-RPIQEVIAEMT---NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNER 316 (380)
Q Consensus 242 ~~vi~~~~~~-~~~~~~~~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~ 316 (380)
++++++++.+ .++.+.+++.+ ++++|++||++|+ +.+..++++|+++ |+++.+|...+. ...++... +.+++
T Consensus 80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~-~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~~~~~~l~~k~~ 156 (189)
T d1gu7a2 80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNN-GLMLTYGGMSFQ-PVTIPTSLYIFKNF 156 (189)
T ss_dssp SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCH-HHHHHHHHTSCTT-CEEEECCCCSSC-CEEECHHHHHHSCC
T ss_pred cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCc-chhhhhhhhhcCC-cEEEEECCccCC-CccCcHHHHHHCCc
Confidence 9999876432 33555565543 4489999999997 7789999999997 999999976533 33333333 44899
Q ss_pred EEEeeeecCCCCC------CChHHHHHHHHcCC
Q 016933 317 TLKGTFFGNYKPR------TDLPSVVDMYMNKQ 343 (380)
Q Consensus 317 ~i~g~~~~~~~~~------~~~~~~~~~~~~~~ 343 (380)
++.|++++.+... +.+.++++++++|+
T Consensus 157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 189 (189)
T d1gu7a2 157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 189 (189)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence 9999876543221 23566666666653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.2e-24 Score=178.07 Aligned_cols=146 Identities=19% Similarity=0.293 Sum_probs=118.1
Q ss_pred CCccchhhcchhhhhhhhhhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEec
Q 016933 168 APLDKVCILSCGVSTGLGATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVN 246 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~ 246 (380)
+++++||++++++.|||+++ +.+++++|++|||+|+ |++|++++|+||.+|+ +|++++++++|.+.++++|+++++|
T Consensus 1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~ 78 (171)
T d1iz0a2 1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT 78 (171)
T ss_dssp CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence 57899999999999999997 4589999999999996 9999999999999999 8999999999999999999999998
Q ss_pred CCCCCccHHHHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeeeec
Q 016933 247 TSEHDRPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTFFG 324 (380)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~~~ 324 (380)
+.+ .. .+.+.+ ++|+|||++| +.++.++++++++ |+++.+|...+ ....++... +.|++++.|++..
T Consensus 79 ~~~----~~---~~~~~~~g~D~v~d~~G--~~~~~~~~~l~~~-G~~v~~G~~~g-~~~~~~~~~~~~k~~~i~g~~~~ 147 (171)
T d1iz0a2 79 YAE----VP---ERAKAWGGLDLVLEVRG--KEVEESLGLLAHG-GRLVYIGAAEG-EVAPIPPLRLMRRNLAVLGFWLT 147 (171)
T ss_dssp GGG----HH---HHHHHTTSEEEEEECSC--TTHHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHH
T ss_pred hhh----hh---hhhhccccccccccccc--hhHHHHHHHHhcC-CcEEEEeCCCC-CCCCccHHHHHHCCcEEEEEeCc
Confidence 754 32 333334 8999999987 4689999999997 99999998653 233333333 4599999998765
Q ss_pred CC
Q 016933 325 NY 326 (380)
Q Consensus 325 ~~ 326 (380)
.+
T Consensus 148 ~~ 149 (171)
T d1iz0a2 148 PL 149 (171)
T ss_dssp HH
T ss_pred Ch
Confidence 54
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=2e-23 Score=174.92 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=128.3
Q ss_pred CCCccchhhcchhhhhhhhhhhhccCCCCC--CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHH-HHHHhcCCc
Q 016933 167 LAPLDKVCILSCGVSTGLGATLNVAKPERG--SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRF-EEAKKFGVT 242 (380)
Q Consensus 167 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~-~~~~~lG~~ 242 (380)
++|+.+.| +++++.|||++|.+.+++++| ++|||+|+ |++|++++|+||.+|+.+|+++++++++. ++.+++|++
T Consensus 1 ~~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad 79 (187)
T d1vj1a2 1 HLSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD 79 (187)
T ss_dssp CGGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred CccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce
Confidence 35566644 677899999999999999987 88999986 99999999999999997788776666554 555689999
Q ss_pred eEecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCC-ceeecc-------c-cccc
Q 016933 243 DFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKD-AVFMTK-------P-INVL 313 (380)
Q Consensus 243 ~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~-------~-~~~~ 313 (380)
+++|+.+++ +.+.+++.++.++|+|||++|+ +.++.++++++++ |+++.+|..++. ...+.. . ....
T Consensus 80 ~vi~~~~~~--~~~~~~~~~~~GvDvv~D~vGg-~~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~ 155 (187)
T d1vj1a2 80 AAVNYKTGN--VAEQLREACPGGVDVYFDNVGG-DISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKE 155 (187)
T ss_dssp EEEETTSSC--HHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHH
T ss_pred EEeeccchh--HHHHHHHHhccCceEEEecCCc-hhHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHh
Confidence 999998877 8899999887799999999997 7899999999997 999999975421 111111 1 1123
Q ss_pred cccEEEeeeecCCCCC--CChHHHHHHHHcCC
Q 016933 314 NERTLKGTFFGNYKPR--TDLPSVVDMYMNKQ 343 (380)
Q Consensus 314 ~~~~i~g~~~~~~~~~--~~~~~~~~~~~~~~ 343 (380)
+++++.|+....+.++ +.++++++++++||
T Consensus 156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk 187 (187)
T d1vj1a2 156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK 187 (187)
T ss_dssp TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence 7888888765544321 23566777777764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=4.3e-22 Score=167.34 Aligned_cols=166 Identities=23% Similarity=0.212 Sum_probs=133.1
Q ss_pred cchhhcchhhhhhhhhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC
Q 016933 171 DKVCILSCGVSTGLGATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH 250 (380)
Q Consensus 171 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~ 250 (380)
++.++|...++|||+++ +.+++++|++|||+|+|++|++++++|+.+|+.+|++++.+++|+++++++|+++++++.+.
T Consensus 2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~ 80 (195)
T d1kola2 2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDT 80 (195)
T ss_dssp HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSS
T ss_pred chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCc
Confidence 45677888999999995 67999999999999999999999999999999899999999999999999999999998776
Q ss_pred CccHHHHHHHHhCC-CccEEEEcccC---------------hhhHHHHHHHhhcCCcEEEEEcCCCCCceee--------
Q 016933 251 DRPIQEVIAEMTNG-GVDRSVECTGN---------------IDNMISAFECVHDGWGVAVLVGVPSKDAVFM-------- 306 (380)
Q Consensus 251 ~~~~~~~~~~~~~~-~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-------- 306 (380)
+ +.+.+.+++++ ++|++||++|. ++.++.++++++++ |+++++|...+.....
T Consensus 81 ~--~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~~ 157 (195)
T d1kola2 81 P--LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIG 157 (195)
T ss_dssp C--HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHTT
T ss_pred C--HHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhcC
Confidence 6 88999999988 99999999984 36899999999997 9999999754322211
Q ss_pred ---ccc-cccccccEEEeeeecCCCCCCChHHHHHHHHcCC
Q 016933 307 ---TKP-INVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQ 343 (380)
Q Consensus 307 ---~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 343 (380)
+.. ..+.|++++.+- ....++.+.++++++.++|
T Consensus 158 ~~~~~~~~~~~k~~~i~~g---~~~v~~~~~~Ll~~I~~~k 195 (195)
T d1kola2 158 SLSIRFGLGWAKSHSFHTG---QTPVMKYNRALMQAIMWDR 195 (195)
T ss_dssp CCCCCHHHHHHTTCEEEES---SCCHHHHHHHHHHHHHTTS
T ss_pred ceeeeHHHHHhhcceeccC---CCchHHHHHHHHHHHHcCC
Confidence 111 113366776542 2222334677777776653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.2e-22 Score=163.78 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=119.0
Q ss_pred CCccchhhcchhhhhhhhhhh---hccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce
Q 016933 168 APLDKVCILSCGVSTGLGATL---NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD 243 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~ 243 (380)
+++.+||+++++..|||++++ +....+++++|||+|+ |++|++++|+||.+|+ +||++++++++.+.++++|+++
T Consensus 1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~ 79 (177)
T d1o89a2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR 79 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence 578999999999999998753 3344556679999987 9999999999999999 8999999999999999999999
Q ss_pred EecCCCCCccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeeccccc-cccccEEEeee
Q 016933 244 FVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPIN-VLNERTLKGTF 322 (380)
Q Consensus 244 vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~g~~ 322 (380)
++++++.+ +. +.+.+..+|.++|++|+ +.+..++++++++ |+++.+|...+. ....+... +.+++++.|+.
T Consensus 80 vi~~~~~~--~~---~~l~~~~~~~vvD~Vgg-~~~~~~l~~l~~~-Griv~~G~~~~~-~~~~~~~~~~~k~~~i~G~~ 151 (177)
T d1o89a2 80 VLPRDEFA--ES---RPLEKQVWAGAIDTVGD-KVLAKVLAQMNYG-GCVAACGLAGGF-TLPTTVMPFILRNVRLQGVD 151 (177)
T ss_dssp EEEGGGSS--SC---CSSCCCCEEEEEESSCH-HHHHHHHHTEEEE-EEEEECCCTTCS-CCCCCSHHHHHHCCEEEECC
T ss_pred ccccccHH--HH---HHHHhhcCCeeEEEcch-HHHHHHHHHhccc-cceEeecccCCc-cccccHHHHHHCCCeEEEEe
Confidence 99987654 21 12233468999999998 7899999999997 999999987643 33333333 45999999975
Q ss_pred e
Q 016933 323 F 323 (380)
Q Consensus 323 ~ 323 (380)
.
T Consensus 152 ~ 152 (177)
T d1o89a2 152 S 152 (177)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=2.5e-21 Score=158.10 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=109.2
Q ss_pred hhhhhhh---hhhhccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccH
Q 016933 179 GVSTGLG---ATLNVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPI 254 (380)
Q Consensus 179 ~~~ta~~---~l~~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~ 254 (380)
+..|||. +|.+....+++++|||+|+ |++|++++|+||.+|+ +||++.++++|.++++++|+++++++++..
T Consensus 4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~~~--- 79 (167)
T d1tt7a2 4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISREDVY--- 79 (167)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHHHC---
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccchh---
Confidence 4566664 4555666778889999987 9999999999999999 899999999999999999999999875421
Q ss_pred HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccccccEEEeeee
Q 016933 255 QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVLNERTLKGTFF 323 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~g~~~ 323 (380)
.+.++...++++|+|||++|+ +.+..++++++++ |+++.+|...+. ..+++.. .+.+++++.|+..
T Consensus 80 ~~~~~~~~~~gvd~vid~vgg-~~~~~~~~~l~~~-G~iv~~G~~~g~-~~~~~~~~l~~k~~~i~G~~~ 146 (167)
T d1tt7a2 80 DGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGGG-EVPATVYPFILRGVSLLGIDS 146 (167)
T ss_dssp SSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSCS-CEEECSHHHHTSCCEEEECCS
T ss_pred chhhhcccCCCceEEEecCcH-HHHHHHHHHhccC-ceEEEeeccCCC-cccCCHHHHHHCCcEEEEEec
Confidence 111222334489999999998 7899999999997 999999988743 3344433 3559999999653
|
| >d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.64 E-value=1.1e-15 Score=120.96 Aligned_cols=131 Identities=16% Similarity=0.094 Sum_probs=96.0
Q ss_pred hhhhhhccC--CCC----eEEEEeecCCCCCCeEEEEEeeeecCcccchhhccCCCCCCCCccccccccEEEEEeCCCCC
Q 016933 11 CKAAVAWEA--GKP----LIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLFPRIFGHEAAGVVESVGEGVS 84 (380)
Q Consensus 11 ~~a~~~~~~--~~~----~~~~~~~~p~~~~~eVlV~v~~~~l~~~D~~~~~g~~~~~~~p~v~G~e~vG~V~~vG~~v~ 84 (380)
.|+|++.+. |.| |++++.++|+|++||||||++|.++++....... ......++..+++|+|++ |+.+
T Consensus 4 ~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~----~~~~g~~~~g~~vg~Vv~--S~~~ 77 (147)
T d1v3va1 4 AKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK----RLKEGAVMMGQQVARVVE--SKNS 77 (147)
T ss_dssp EEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG----GSCTTSBCCCCEEEEEEE--ESCT
T ss_pred cEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc----ccccCCccccceEEEEEE--eCCC
Confidence 567766544 433 9999999999999999999999999875433222 122333566789999988 5668
Q ss_pred CCCCCCEEEecCccCCCCCccccCCCcCCCcccccCCCCcccccCCCcccccCCCccccccCCcceeeEEEEeccceEeC
Q 016933 85 DLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKI 164 (380)
Q Consensus 85 ~~~~GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~g~~~~~~~~~G~~a~~~~v~~~~~~~~ 164 (380)
+|++||+|+.. ++|+||.+++.+.+.++
T Consensus 78 ~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~kv 105 (147)
T d1v3va1 78 AFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLEKL 105 (147)
T ss_dssp TSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCEEC
T ss_pred cccCCCEEEEc----------------------------------------------------cCCEeEEEeccceeeEc
Confidence 89999999833 37999999999999999
Q ss_pred CCCCC-----ccchhhcchhhhhhhh-hhhhccCCCCCCeEEE
Q 016933 165 NPLAP-----LDKVCILSCGVSTGLG-ATLNVAKPERGSSVAV 201 (380)
Q Consensus 165 p~~~~-----~~~aa~l~~~~~ta~~-~l~~~~~~~~g~~vlI 201 (380)
|+..+ ....+++.....||++ .|+ ...+.|++||+
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~ 146 (147)
T d1v3va1 106 LTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT 146 (147)
T ss_dssp CTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred cccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence 87643 3344556666677544 543 44567999986
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=9.5e-15 Score=101.12 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCccchhhcchhhhhhhhhhh---hccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 168 APLDKVCILSCGVSTGLGATL---NVAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 168 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|+++|+.+++++.|||.+++ +....+++++|||+|+ |++|.+++|+||.+|+ +|+++.+++++.++++++|+
T Consensus 1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA 77 (77)
T d1o8ca2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA 77 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence 578999999999999988754 4566789999999987 9999999999999999 89999999999999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.17 E-value=2.7e-06 Score=66.73 Aligned_cols=100 Identities=22% Similarity=0.155 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+..+|+|+|+|..|+.|+..|+.+|+ .|.+++.+.++++.+++.....+......+..+.+.++ ..|+|+.++=
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~-----~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA-----EADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHH-----TCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhc-----cCcEEEEeee
Confidence 45789999999999999999999999 99999999999999988654332111111112333332 4899999875
Q ss_pred Chh------hHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 275 NID------NMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 275 ~~~------~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
-+. ..+.+++.++++ ..++.+....+
T Consensus 105 ipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG 136 (168)
T d1pjca1 105 VPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG 136 (168)
T ss_dssp CTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred cCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence 321 356899999997 99999887553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.05 E-value=1.1e-05 Score=64.04 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecC-CCC-----------------CccHHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNT-SEH-----------------DRPIQE 256 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~-~~~-----------------~~~~~~ 256 (380)
+..+|+|+|+|..|+.|+..|+.+|+ .|.+++.+.++++.+++++...+... ... .....+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999988554210 000 011233
Q ss_pred HHHHHhCCCccEEEEcccChh------hHHHHHHHhhcCCcEEEEEcCCC
Q 016933 257 VIAEMTNGGVDRSVECTGNID------NMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 257 ~~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+.+... ..|+|+-++=-+. ..+.+++.|+++ +.++.+....
T Consensus 107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidq 154 (183)
T d1l7da1 107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEA 154 (183)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGG
T ss_pred HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecC
Confidence 3444333 5899998864321 356899999997 9999887654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.66 E-value=0.00026 Score=59.75 Aligned_cols=105 Identities=24% Similarity=0.124 Sum_probs=73.9
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCC--ccHHHHHHHHhCCCccEE
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHD--RPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~--~~~~~~~~~~~~~~~d~v 269 (380)
-+|+++||+|+ +++|.+.++.....|+ +|+..++++++.+.+++.+...+ .|..+.+ ..+.+.+.+.. +++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDiL 80 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYAL-GRVDVL 80 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhc-CCCCeE
Confidence 36899999997 9999999999989999 89999999999999888887543 3333321 12333333333 379999
Q ss_pred EEcccCh-------------------------hhHHHHHHHhhcC-CcEEEEEcCCC
Q 016933 270 VECTGNI-------------------------DNMISAFECVHDG-WGVAVLVGVPS 300 (380)
Q Consensus 270 ~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~~~ 300 (380)
++++|.. .....+++.|.+. +|+++.++...
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~ 137 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 137 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence 9998752 1344556666442 38899887643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.65 E-value=0.00014 Score=56.85 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
+--.+.+|||+|+|.+|.+.+..+...|++.++++.++.+|. ++++++|.. ++.+++ +.+.+. .+|+||
T Consensus 20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~~----~~~~l~-----~~Divi 89 (159)
T d1gpja2 20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFDE----LVDHLA-----RSDVVV 89 (159)
T ss_dssp SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGGG----HHHHHH-----TCSEEE
T ss_pred CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccchh----HHHHhc-----cCCEEE
Confidence 334678999999999999999999889998899999998775 466778863 443332 444332 489999
Q ss_pred EcccChh
Q 016933 271 ECTGNID 277 (380)
Q Consensus 271 d~~g~~~ 277 (380)
.|++.+.
T Consensus 90 ~atss~~ 96 (159)
T d1gpja2 90 SATAAPH 96 (159)
T ss_dssp ECCSSSS
T ss_pred EecCCCC
Confidence 9998753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=0.00011 Score=58.20 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=56.2
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCc
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
++...+.++++|||+|+|+.+.+++..++..|++++.++.|+.+|.+.+.+ ++...+ +... ...+
T Consensus 9 l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~-~~~~-------------~~~~ 74 (167)
T d1npya1 9 IEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI-NSLE-------------NQQA 74 (167)
T ss_dssp HHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE-SCCT-------------TCCC
T ss_pred HHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh-hccc-------------ccch
Confidence 455666678999999999999999999999999889999999998776654 554332 2111 1258
Q ss_pred cEEEEccc
Q 016933 267 DRSVECTG 274 (380)
Q Consensus 267 d~v~d~~g 274 (380)
|++++|+.
T Consensus 75 DliINaTp 82 (167)
T d1npya1 75 DILVNVTS 82 (167)
T ss_dssp SEEEECSS
T ss_pred hhheeccc
Confidence 99999975
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.64 E-value=2.3e-05 Score=64.70 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=72.9
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceEecCCCC-CccHHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDFVNTSEH-DRPIQEVIAEM 261 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~vi~~~~~-~~~~~~~~~~~ 261 (380)
+.+..++++|++||.+|+| .|+.++.+|+..|. +|++++.+++-.+.+ +++|.+.+.....+ ...+ .
T Consensus 70 ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~------~ 141 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF------P 141 (215)
T ss_dssp HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------G
T ss_pred HHHhhccCccceEEEecCC-CChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC------c
Confidence 3567889999999999986 48888999998886 899999988655544 44777654322221 1001 1
Q ss_pred hCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 262 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
..+.||.|+-+.+.......+++.|+++ |+++..
T Consensus 142 ~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p 175 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 175 (215)
T ss_dssp GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred ccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence 1237999988877766677899999997 998863
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=7.4e-05 Score=61.69 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=72.8
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecC-CCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNT-SEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~-~~~~~~~~~~~~~ 260 (380)
+.+..++++|++||-+|+|. |..++.+|+..|. .+|++++.+++..+.+++ .+.+.+.-. .+....+
T Consensus 67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~------ 139 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV------ 139 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------
T ss_pred HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc------
Confidence 45678899999999999875 8888999998863 389999999988877765 344333211 1111000
Q ss_pred HhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 261 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
...+.||+|+...+-......+++.|+|+ |+++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p 174 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 174 (213)
T ss_dssp GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred ccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence 11236999998877656667889999997 998863
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.45 E-value=0.00061 Score=57.56 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=70.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceEe---cCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDFV---NTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~vi---~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++++..... |..+.+ ..+.+.+.+.. +.+|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~iD 82 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh-CCCC
Confidence 5789999987 8999999988888999 899999998887655 446654432 222211 12333333332 4799
Q ss_pred EEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 268 RSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 268 ~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+++++.|.. .....++..|++.+|+++.++...
T Consensus 83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~ 140 (253)
T d1hxha_ 83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS 140 (253)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence 999999852 134466677765459999988643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.0009 Score=56.34 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc-eE--ecCCCCC--ccHHHHHHHHhCCCccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT-DF--VNTSEHD--RPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~-~v--i~~~~~~--~~~~~~~~~~~~~~~d~ 268 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+.+.... .. .|..+.+ ..+.+.+.+.. +++|+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~iDi 82 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDC 82 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc-CCCCE
Confidence 5899999997 9999999988888999 899999999988877664332 22 2333321 12223333332 37999
Q ss_pred EEEcccCh--------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 269 SVECTGNI--------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 269 v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++++.|.. .....+++.|++++|+++.++..
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~ 139 (250)
T d1ydea1 83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL 139 (250)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence 99998741 13445566665544899988753
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.31 E-value=0.00019 Score=60.40 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=69.7
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cC-CceEecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FG-VTDFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG-~~~vi~~~~~~~~~~~~~~~ 260 (380)
+....+++||++||=.|+|. |.+++.+|+..|. .+|++++.+++..+.+++ ++ .+.+- ....| +.+.
T Consensus 77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~-~~~~D--i~~~--- 149 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSRSD--IADF--- 149 (250)
T ss_dssp ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EECSC--TTTC---
T ss_pred HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceE-EEEee--eecc---
Confidence 34568899999999998764 7788889988753 389999999998888875 22 22221 11111 1110
Q ss_pred HhCCCccEEE-EcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 261 MTNGGVDRSV-ECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 261 ~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
...+.+|.|| |.......+..+.+.|+|+ |+++++..
T Consensus 150 ~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P 187 (250)
T d1yb2a1 150 ISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 187 (250)
T ss_dssp CCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred cccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence 1123789886 5444446789999999997 99998744
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.001 Score=55.71 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=68.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce---EecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD---FVNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~---vi~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+. +++... ..|..+.+ ..+.+.+.+.. +++|
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD 80 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEF-GEVD 80 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHT-CSCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhccc-CCcc
Confidence 5789999987 9999999988888999 8999999998876554 355432 23433322 12333333332 4799
Q ss_pred EEEEcccCh-------------------------hhHHHHHHHh--hcCCcEEEEEcCC
Q 016933 268 RSVECTGNI-------------------------DNMISAFECV--HDGWGVAVLVGVP 299 (380)
Q Consensus 268 ~v~d~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~~ 299 (380)
+++++.|.. .....+++.+ +.+ |+++.++..
T Consensus 81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~ 138 (243)
T d1q7ba_ 81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSV 138 (243)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCH
T ss_pred eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecch
Confidence 999998752 1344555665 344 899999763
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.26 E-value=0.0007 Score=57.34 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=57.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+... . .|..+.+ ..+.+.+.+..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 6899999997 9999999999889999 899999998775544 4455433 2 2333322 1233444555556
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
..|+++++.|.
T Consensus 84 ~idilinnag~ 94 (258)
T d1ae1a_ 84 KLNILVNNAGV 94 (258)
T ss_dssp CCCEEEECCCC
T ss_pred CcEEEeccccc
Confidence 79999998885
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.0007 Score=56.76 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceE-ecCCCCC--ccHHHHHHHHhCCCccEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDF-VNTSEHD--RPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~v-i~~~~~~--~~~~~~~~~~~~~~~d~v 269 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+.+ +++..+ .|..+.+ ..+.+.+.+.. +++|++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iDil 81 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL-GRLDGV 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH-SSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc-CCceEE
Confidence 4789999997 8999999999999999 89999999988776644 665443 3433322 12333333333 379999
Q ss_pred EEcccC
Q 016933 270 VECTGN 275 (380)
Q Consensus 270 ~d~~g~ 275 (380)
++++|.
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.001 Score=55.79 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=54.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++++.+.+ ++....+..+-.+.+-.+.+.+.. +++|+++++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-g~iDilVnn 83 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV-GPVDLLVNN 83 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC-CCCCEEEEC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh-CCceEEEec
Confidence 6899999997 9999999998888999 89999999988766544 443232222222222222222222 379999998
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 84 Ag~ 86 (244)
T d1pr9a_ 84 AAV 86 (244)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.24 E-value=0.0002 Score=59.32 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=70.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--ce--EecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--TD--FVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--~~--vi~~~~~~~~~~~~~~~~~ 262 (380)
+.+...+++|++||-+|+| .|+.++.+|+.. . +|++++.+++..+.+++.-. .. ++. .+....+. .
T Consensus 62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l~-~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~-~d~~~g~~------~ 131 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLIL-GDGTLGYE------E 131 (224)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEE-SCGGGCCG------G
T ss_pred HHHHhhhcccceEEEecCC-CCHHHHHHHHHh-c-ccccccccHHHHHHHHHHHhccccccccc-Cchhhcch------h
Confidence 3567789999999999987 578888888864 4 89999999998888877322 11 221 11110110 1
Q ss_pred CCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+.||.|+-+.+.+.....++++|+++ |+++..
T Consensus 132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred hhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence 237999987766656677889999997 998864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0013 Score=51.85 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=53.7
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cC---CceEecCCCCCccHHHHHHHHh
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FG---VTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG---~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
|.+..-..+|++|||+|+|+.+.+++..+..+|+ +|+.+.|+.+|.+.+.+ +. ....+..++ ..
T Consensus 9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----------~~ 76 (170)
T d1nyta1 9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----------LE 76 (170)
T ss_dssp HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----------GT
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc-----------cc
Confidence 3333334678999999999999999999999999 79999999988766654 32 111222111 11
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
...+|++++|+..
T Consensus 77 ~~~~dliIN~Tp~ 89 (170)
T d1nyta1 77 GHEFDLIINATSS 89 (170)
T ss_dssp TCCCSEEEECCSC
T ss_pred ccccceeeccccc
Confidence 2368999999865
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.13 E-value=0.00029 Score=56.91 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CC-ceEecCCCCCccHHHHHHHHhCCC
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GV-TDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~-~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
--+|+++||+|+ |++|...+..+...|+ +|+.++++.++.+.+.+ + .. ....|..+ .+.+.+.. ++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~-~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-----DASRAEAV-KG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-----HHHHHHHT-TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc-----HHHHHHHh-cC
Confidence 347899999997 9999999999999999 89999999988766644 2 21 12233333 12344443 36
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++|++.|.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 9999999874
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.12 E-value=0.0055 Score=44.40 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC--hhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS--SKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~--~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.|++|||+|+|.+|..-+..+...|+ +|++++.. ++-..++++-+.. .+...-.+.++ .++++|+-+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~-~~~~~~~~~dl---------~~~~lv~~a 79 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLT-LVEGPFDETLL---------DSCWLAIAA 79 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCE-EEESSCCGGGG---------TTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCce-eeccCCCHHHh---------CCCcEEeec
Confidence 46899999999999999999999999 77776543 3333444332332 22211111111 268999999
Q ss_pred ccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 273 TGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
.+..+.-....+..++. |..+.+....
T Consensus 80 t~d~~~n~~i~~~a~~~-~ilVNv~D~p 106 (113)
T d1pjqa1 80 TDDDTVNQRVSDAAESR-RIFCNVVDAP 106 (113)
T ss_dssp CSCHHHHHHHHHHHHHT-TCEEEETTCT
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEeCCCh
Confidence 98866656777888886 9888876643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.11 E-value=0.0017 Score=54.34 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+. +++.-..+..+-.+.+..+.+.+.. +++|+++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g~iDilVnn 81 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI-GPVDLLVNN 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC-CCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc-CCCeEEEEC
Confidence 5899999997 8999999998888999 8999999988876554 4433222222222222222222222 379999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 82 Ag~ 84 (242)
T d1cyda_ 82 AAL 84 (242)
T ss_dssp CCC
T ss_pred Ccc
Confidence 874
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00098 Score=55.94 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=57.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++++.+.+.........+....+..+...+.. +..|+++++.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~id~lVn~a 82 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNVA 82 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecccccccccccccc-ccceeEEecc
Confidence 5789999987 9999999999989999 99999999988877766433333222223333444444433 3799999998
Q ss_pred cC
Q 016933 274 GN 275 (380)
Q Consensus 274 g~ 275 (380)
|.
T Consensus 83 g~ 84 (245)
T d2ag5a1 83 GF 84 (245)
T ss_dssp CC
T ss_pred cc
Confidence 75
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.08 E-value=0.0013 Score=55.59 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=54.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce-E--ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD-F--VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.++.....|+ +|+..++++++.+.+. +.|... . .|..+.+ ..+.+.+.+..++
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 6899999997 8999998888888999 8999999988775543 345433 2 2333222 1233333333344
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 86 ~idilvnnAG~ 96 (259)
T d2ae2a_ 86 KLNILVNNAGI 96 (259)
T ss_dssp CCCEEEECCCC
T ss_pred CceEEEECCce
Confidence 79999999885
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.0037 Score=52.45 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=68.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-----HhcCCceE---ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-----KKFGVTDF---VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~ 263 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+..
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF- 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence 4789999987 9999999999889999 899999998775433 34565432 2333322 12333333333
Q ss_pred CCccEEEEcccCh-------------------------hhHHHHHHHhhcC-CcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI-------------------------DNMISAFECVHDG-WGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~~ 299 (380)
+++|++++++|.. .....++..|.+. +|+++.++..
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 3799999998852 2344567777442 3788888753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.99 E-value=0.0012 Score=55.79 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce---EecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD---FVNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~---vi~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+.+ .+... ..|..+.+ ..+.+.+.+..++
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 5899999987 9999999988888999 89999999887655432 33322 22333322 2233344444455
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 86 ~idilvnnAG~ 96 (259)
T d1xq1a_ 86 KLDILINNLGA 96 (259)
T ss_dssp CCSEEEEECCC
T ss_pred Ccccccccccc
Confidence 79999999885
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.98 E-value=0.0039 Score=48.96 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+++|||+|+|.+|..+++.+...|+ +|++++++.++.+.+.+-...........+ ......... ...|.++.+..
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~--~~~~~~~~i-~~~~~~i~~~~ 76 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVN--DDAALDAEV-AKHDLVISLIP 76 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTT--CHHHHHHHH-TTSSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccccc--chhhhHhhh-hccceeEeecc
Confidence 36899999999999999988888899 899999999998887663332322222221 111111111 24688888877
Q ss_pred ChhhHHHHHHHhhcCCcEEEEE
Q 016933 275 NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
..........++..+ ..++..
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~ 97 (182)
T d1e5qa1 77 YTFHATVIKSAIRQK-KHVVTT 97 (182)
T ss_dssp GGGHHHHHHHHHHHT-CEEECS
T ss_pred chhhhHHHHHHHhhc-cceeec
Confidence 655555555556664 555443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.003 Score=53.64 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-----cCCce-EecCCCCCccH----HHHHHHHh
Q 016933 194 ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-----FGVTD-FVNTSEHDRPI----QEVIAEMT 262 (380)
Q Consensus 194 ~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-----lG~~~-vi~~~~~~~~~----~~~~~~~~ 262 (380)
-+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+.+ .+... .+..+..+... .+.+...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~- 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL- 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH-
Confidence 36899999997 9999998888888999 99999999998776643 23322 22222222112 2222222
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
.+..|++++..|.
T Consensus 90 ~g~~~~li~nag~ 102 (269)
T d1xu9a_ 90 MGGLDMLILNHIT 102 (269)
T ss_dssp HTSCSEEEECCCC
T ss_pred hCCcccccccccc
Confidence 2368888887664
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.0016 Score=55.25 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=72.5
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCce-E-ecCCCCCccHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTD-F-VNTSEHDRPIQEVIA 259 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~-v-i~~~~~~~~~~~~~~ 259 (380)
+....++++|++||=.|+|. |.+++.+|+..|. .+|++++.+++..+.+++ +|... + +...+...
T Consensus 95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~------- 166 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE------- 166 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-------
T ss_pred HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-------
Confidence 45678999999999998864 7888899998752 299999999998888765 55422 2 22222100
Q ss_pred HHhCCCccEEEEcccC-hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 260 EMTNGGVDRSVECTGN-IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
......+|.|+--... ...+..+.+.|+|+ |+++.+..
T Consensus 167 ~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~P 205 (266)
T d1o54a_ 167 GFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP 205 (266)
T ss_dssp CCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred cccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEeC
Confidence 1112268877655554 46789999999997 99987643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.88 E-value=0.0019 Score=54.07 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hcCCce-E--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+. +++... . .|..+.+ ..+.+.+.+.. +++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id 82 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAF-GGLH 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHh-CCCe
Confidence 5799999997 9999999988888999 8999999998876554 454322 1 2333322 12333333333 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 83 ilinnAG~ 90 (244)
T d1nffa_ 83 VLVNNAGI 90 (244)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999885
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0066 Score=51.00 Aligned_cols=79 Identities=25% Similarity=0.388 Sum_probs=54.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCc-eE----ecCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVT-DF----VNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~-~v----i~~~~~~--~~~~~~~~~~~ 262 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.+.. .+ .|..+.+ ..+.+.+.+..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4789999997 9999998888888999 899999999886664 333321 22 2333322 12333344433
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 88 -g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 88 -SGVDICINNAGL 99 (257)
T ss_dssp -CCCSEEEECCCC
T ss_pred -CCCCEEEecccc
Confidence 479999999886
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.84 E-value=0.0074 Score=47.55 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCC--------CccHHHHHHHHhCCCcc
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEH--------DRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~--------~~~~~~~~~~~~~~~~d 267 (380)
.++|.|+|+|.+|++.+..+...|+ .|+.+++++++.+.+++.+.......... ..+..+.+ ..+|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~aD 74 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDAD 74 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCCC
Confidence 3689999999999999999999999 99999999999999988664322111000 01122222 2589
Q ss_pred EEEEcccChhhHHHHHHHhh
Q 016933 268 RSVECTGNIDNMISAFECVH 287 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~ 287 (380)
++|-++... .....++.++
T Consensus 75 ~iii~v~~~-~~~~~~~~i~ 93 (184)
T d1bg6a2 75 VILIVVPAI-HHASIAANIA 93 (184)
T ss_dssp EEEECSCGG-GHHHHHHHHG
T ss_pred EEEEEEchh-HHHHHHHHhh
Confidence 999999874 3444444444
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.84 E-value=0.00028 Score=59.09 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC----ccHHHHHHHHhCC-CccE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD----RPIQEVIAEMTNG-GVDR 268 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~----~~~~~~~~~~~~~-~~d~ 268 (380)
.|++|||+|+ +++|.+.++.....|+ +|+.+++++.+.. .....+.....+ ..+...+.+.... ++|+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 74 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA 74 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence 4789999997 9999999999999999 8988877654321 111122222211 1123333344343 7999
Q ss_pred EEEcccCh--------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 269 SVECTGNI--------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 269 v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++++|.. .....+++.++++ |+++.++..
T Consensus 75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~ 130 (236)
T d1dhra_ 75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAK 130 (236)
T ss_dssp EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccH
Confidence 99998741 1233466677886 999999764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.82 E-value=0.0022 Score=53.97 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=54.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCce-E--ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTD-F--VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+ +++|... . .|..+.+ ..+.+.+.+.. +++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD 81 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEF-GSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHc-CCcc
Confidence 5899999987 8999998888888999 899999998877655 4465432 1 2333221 12333333333 3799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 ilVnnAg~ 89 (254)
T d1hdca_ 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEecCcc
Confidence 99999875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.81 E-value=0.0054 Score=51.38 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=53.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~ 264 (380)
.++++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+.. +
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH-K 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc-C
Confidence 4688999987 8999998888878899 899999998876544 34554322 2333321 12333333332 4
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 79999998875
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.79 E-value=0.0019 Score=55.19 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=54.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE---ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+ +++|.... .|..+.+ ..+.+.+.+.. +.+|
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id 81 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARF-GKID 81 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHh-CCcc
Confidence 5899999987 9999999988888999 999999999887554 44664332 2333221 12222333322 3799
Q ss_pred EEEEccc
Q 016933 268 RSVECTG 274 (380)
Q Consensus 268 ~v~d~~g 274 (380)
+++++.|
T Consensus 82 ilvnnAG 88 (276)
T d1bdba_ 82 TLIPNAG 88 (276)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9999887
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=96.79 E-value=0.0038 Score=52.94 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC---ceEe--cCCCCC--ccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV---TDFV--NTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~---~~vi--~~~~~~--~~~~~~~~~~~~~~ 265 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+.+ ++. ...+ |..+.+ ..+.+.+.+.. +.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH-GK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHc-CC
Confidence 5799999997 9999999888888999 89999999988765543 432 1222 333321 12223333332 47
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++++++|.
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 9999998873
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.77 E-value=0.0029 Score=53.39 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=54.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCceE---ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTDF---VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~v---i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+. +.|.+.. .|..+.+ ..+.+.+.+.. +
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-G 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence 5899999987 9999998888888999 8999999998776543 3454332 2333322 12333333333 4
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
.+|+++++.|.
T Consensus 82 ~iDilVnnaG~ 92 (260)
T d1zema1 82 KIDFLFNNAGY 92 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCeehhhhcc
Confidence 79999998874
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.76 E-value=0.0012 Score=55.43 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCCce--Ee--cCCCCC--ccHHHHHHHHhCC-Cc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVTD--FV--NTSEHD--RPIQEVIAEMTNG-GV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~~~--vi--~~~~~~--~~~~~~~~~~~~~-~~ 266 (380)
.++|||+|+ +++|++.++.....|+. +|+.+.++.++.+.+++..... ++ |..+.+ ..+.+.+.+..+. +.
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i 82 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL 82 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence 378999997 99999988777667863 7888889999988887754322 22 333321 2244445444444 69
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 83 dilinnAG~ 91 (250)
T d1yo6a1 83 SLLINNAGV 91 (250)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999999884
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.75 E-value=0.002 Score=54.34 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE---ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+ +++|.... .|..+.+ ..+.+.+.+.. +++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~-g~iD 81 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRW-GSID 81 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHh-CCcc
Confidence 5789999987 9999999988888999 899999998876544 55775432 2333322 12333333332 4799
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++++.|.
T Consensus 82 ilVnnAg~ 89 (256)
T d1k2wa_ 82 ILVNNAAL 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 99999885
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0075 Score=47.74 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA 236 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~ 236 (380)
-++++|||+|+|+.+.+++..+...|+++++.+.++.++.+.+
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~ 58 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 58 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence 3678999999999999999888889998999999987765543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0024 Score=52.66 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=67.1
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCc-----eE-ecCCCCCccHHHHHH
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVT-----DF-VNTSEHDRPIQEVIA 259 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~-----~v-i~~~~~~~~~~~~~~ 259 (380)
..+++|++||-+|+| .|+.++.+|+..| ..+|++++.+++-.+.+++ .+.. .+ +...+....+
T Consensus 72 ~~l~~g~~VLdiG~G-sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~----- 145 (224)
T d1i1na_ 72 DQLHEGAKALDVGSG-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY----- 145 (224)
T ss_dssp TTSCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-----
T ss_pred hccCCCCeEEEecCC-CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-----
Confidence 378999999999986 4888889999876 3389999999987776643 2221 11 1111100000
Q ss_pred HHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEE
Q 016933 260 EMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
...+.||+|+-+.........+++.|+++ |+++..
T Consensus 146 -~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p 180 (224)
T d1i1na_ 146 -AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP 180 (224)
T ss_dssp -GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred -chhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence 01237999998877666778899999997 999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0036 Score=52.23 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCCce---EecCCCCCccHHHHHHHHh--CC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGVTD---FVNTSEHDRPIQEVIAEMT--NG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~~~---vi~~~~~~~~~~~~~~~~~--~~ 264 (380)
.|+++||+|+ +++|...+......|+ +|+.+++++++++.+. +.|... ..|..+.+ ...+.++... -+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~-~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE-DIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH-HHHHHHHHHHHHcC
Confidence 5899999997 8999988877778899 8999999998876553 355432 23333322 2223333221 23
Q ss_pred CccEEEEcccCh-------------------------hhHHHHHHHhhcC-CcEEEEEcCCCC
Q 016933 265 GVDRSVECTGNI-------------------------DNMISAFECVHDG-WGVAVLVGVPSK 301 (380)
Q Consensus 265 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~g~~~~ 301 (380)
.+|++++++|.. .+...++..+..+ +|+++.++....
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~ 146 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG 146 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence 799999998862 1233455555442 378888887653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.68 E-value=0.0042 Score=46.42 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=55.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
++++|+|.|.+|...++.+...|. .|++++.++++.+.+++.|...++- +..+... +.+..-..+|.++-+++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~g-d~~~~~~---l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIA-NATEENE---LLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEEC-CTTCTTH---HHHHTGGGCSEEEECCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceee-ecccchh---hhccCCccccEEEEEcCch
Confidence 357888999999999999999999 8999999999999999988755442 3322223 3333222578888887764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.68 E-value=0.0073 Score=51.15 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC-hhHHH----HHHhcCCceEe-cCCCCC-ccHHHH---HHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS-SKRFE----EAKKFGVTDFV-NTSEHD-RPIQEV---IAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~-~~~~~----~~~~lG~~~vi-~~~~~~-~~~~~~---~~~~~~ 263 (380)
+|+++||+|+ +++|.+.++.....|+ +|+..+++ ++..+ .+++.|.+... ..+-.+ ..+.+. +.+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~- 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF- 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh-
Confidence 4799999997 9999999999999999 78777665 44433 34456654432 222222 123333 33332
Q ss_pred CCccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++|+++++.|.. .....++..|.++ |+++.++..
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~ 154 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 154 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence 3799999988752 2355677778886 888887653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.67 E-value=0.013 Score=50.32 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=65.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC---------hhHHHH----HHhcCCceEecCCCCC--ccHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS---------SKRFEE----AKKFGVTDFVNTSEHD--RPIQEVI 258 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~---------~~~~~~----~~~lG~~~vi~~~~~~--~~~~~~~ 258 (380)
+|+++||+|+ +++|.+.+......|+ +|+..+++ .++.+. +...+.....+..+.+ ..+.+.+
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 84 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA 84 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence 4789999997 9999999988889999 88887543 222222 2334444455554432 1233333
Q ss_pred HHHhCCCccEEEEcccCh-------------------------hhHHHHHHHhhc-CCcEEEEEcCC
Q 016933 259 AEMTNGGVDRSVECTGNI-------------------------DNMISAFECVHD-GWGVAVLVGVP 299 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~ 299 (380)
.+.. +++|+++++.|.. .....++..|.+ ++|+||.++..
T Consensus 85 ~~~~-G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~ 150 (302)
T d1gz6a_ 85 LDTF-GRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA 150 (302)
T ss_dssp HHHT-SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred HHHc-CCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence 3332 4799999998852 134455666632 23899999763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0015 Score=52.98 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.++|+|+|+ |.+|...+..+...|. +|+++.+++++.......++..+ .-+-.+ . +.+.+... +.|+||.++|
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~-~gD~~d--~-~~l~~al~-~~d~vi~~~g 76 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVV-VGDVLQ--A-ADVDKTVA-GQDAVIVLLG 76 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEE-ESCTTS--H-HHHHHHHT-TCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccccc-cccccc--h-hhHHHHhc-CCCEEEEEec
Confidence 368999997 9999999988888899 89999999988765555555433 222222 2 22333333 5899999998
Q ss_pred Chh----------hHHHHHHHhhcC-CcEEEEEcC
Q 016933 275 NID----------NMISAFECVHDG-WGVAVLVGV 298 (380)
Q Consensus 275 ~~~----------~~~~~~~~l~~~-~G~~v~~g~ 298 (380)
... ....+++.++.. ..+++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 531 122445555543 136777654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=96.63 E-value=0.0041 Score=51.77 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=69.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceE---ecCCCCC--ccHHHHHHHHhCCCcc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~d 267 (380)
.|+++||+|+ +++|.+.++-....|+ +|+.+.++.++.+.+ ++++.+.. .|..+.+ .++.+.+.+.. +++|
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~-g~iD 81 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF-GRLH 81 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHh-CCcc
Confidence 5899999997 8999999999999999 999999999876554 45775432 2333222 12233333332 3799
Q ss_pred EEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 268 RSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 268 ~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+++.|.. ......+..+..+ +.++..+...
T Consensus 82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a 138 (241)
T d2a4ka1 82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVA 138 (241)
T ss_dssp EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCT
T ss_pred Eeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccc
Confidence 999988742 1234556667775 7777766543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.63 E-value=0.00038 Score=58.15 Aligned_cols=97 Identities=24% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC----ccHHHHHHHHh-CCCccEE
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD----RPIQEVIAEMT-NGGVDRS 269 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~----~~~~~~~~~~~-~~~~d~v 269 (380)
+.+|||+|+ +++|.+.++.....|+ +|+.+++++++.. .....+..+... ....+.+.... .+.+|++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 457899997 9999999999888999 8999988765321 111122222111 11122233332 3479999
Q ss_pred EEcccCh--------------------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 270 VECTGNI--------------------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 270 ~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++++|.. ......+..++++ |+++.++..
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~ 130 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA 130 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccH
Confidence 9998741 1234566677886 999998764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.60 E-value=0.014 Score=43.32 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=55.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.|+|.|.|.+|...++.+...|. .|++++.++++.+.+.+ ++.. ++.-+..+ .+.+++..-..+|.++-+++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~---~~~l~~~~i~~a~~vv~~t~~d 76 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDCTK---IKTLEDAGIEDADMYIAVTGKE 76 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCTTS---HHHHHHTTTTTCSEEEECCSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcccc---hhhhhhcChhhhhhhcccCCcH
Confidence 58999999999999999999999 99999999999988765 5654 44333333 2234444334789999988874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.59 E-value=0.0052 Score=52.66 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=71.5
Q ss_pred hhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH
Q 016933 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 186 ~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.+.+.+++++|++||=+|+|- |.+++.+|+..|+ +|++++.|++..+.+++ .|....+.....+ . ..
T Consensus 52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d--~-----~~ 122 (291)
T d1kpia_ 52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG--W-----EE 122 (291)
T ss_dssp HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC--G-----GG
T ss_pred HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhc--c-----cc
Confidence 346788999999999999763 4467889999999 99999999988666544 5554322221111 1 11
Q ss_pred hCCCccEEEE-----cccC----------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 262 TNGGVDRSVE-----CTGN----------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 262 ~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+.||.|+. .++. +..+..+.+.|+|+ |++++-...
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i~ 174 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT 174 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEEE
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEEe
Confidence 2347998864 3332 24578899999997 999876543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.57 E-value=0.001 Score=54.80 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=63.8
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHc---CC---cEEEEEcCChhHHHHHHh---------cCCceEe-cCCCCCccH
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIA---GA---SRIIGVDRSSKRFEEAKK---------FGVTDFV-NTSEHDRPI 254 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~---g~---~~vi~~~~~~~~~~~~~~---------lG~~~vi-~~~~~~~~~ 254 (380)
..+++|++||.+|+| .|+.++.+++.. |+ .+|++++.+++-.+.+++ .+...+. ...+....+
T Consensus 76 ~~l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~ 154 (223)
T d1r18a_ 76 DHLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY 154 (223)
T ss_dssp TTCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred hccCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc
Confidence 378999999999874 256665555544 42 279999998876666543 1222221 111111001
Q ss_pred HHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEE-EcC
Q 016933 255 QEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVL-VGV 298 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~-~g~ 298 (380)
...+.||.|+-+.+.+.....+++.|+++ |+++. ++.
T Consensus 155 ------~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~pvg~ 192 (223)
T d1r18a_ 155 ------PPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVGP 192 (223)
T ss_dssp ------GGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEESC
T ss_pred ------ccccceeeEEEEeechhchHHHHHhcCCC-cEEEEEEec
Confidence 01237999988877766677889999997 99976 443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.0082 Score=49.61 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++. ++.+...+ .|..+ .+ +.+.+.. +.+|+++++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~~---~~-~~~~~~~-g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLRK---DL-DLLFEKV-KEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTTT---CH-HHHHHHS-CCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchHH---HH-HHHHHHh-CCCcEEEec
Confidence 5799999997 9999999999999999 899998887654 45555443 23322 13 3333333 479999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 74 AG~ 76 (234)
T d1o5ia_ 74 AGG 76 (234)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.005 Score=47.43 Aligned_cols=101 Identities=24% Similarity=0.241 Sum_probs=70.4
Q ss_pred hhhhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHh
Q 016933 184 LGATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 184 ~~~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
+.++.+..+ .-.|++++|+|-|-+|...++.++.+|+ +|++++.++-+.-.+.--|.. +.. +.+.+
T Consensus 11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v~~-------~~~a~---- 77 (163)
T d1li4a1 11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-VTT-------MDEAC---- 77 (163)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHHT----
T ss_pred HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-eee-------hhhhh----
Confidence 344455444 4589999999999999999999999999 999999988654333333442 221 22222
Q ss_pred CCCccEEEEcccChhh-HHHHHHHhhcCCcEEEEEcCC
Q 016933 263 NGGVDRSVECTGNIDN-MISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~ 299 (380)
...|+++-++|..+. -...++.|+++ ..++.+|..
T Consensus 78 -~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~Ghf 113 (163)
T d1li4a1 78 -QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGHF 113 (163)
T ss_dssp -TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECSSS
T ss_pred -hhccEEEecCCCccchhHHHHHhccCC-eEEEEeccc
Confidence 247999999998554 44778888885 555555554
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0029 Score=53.26 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=54.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCC--ccHHHHHHHHhCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHD--RPIQEVIAEMTNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~ 264 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+.. +
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~-g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-G 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence 6799999987 9999999888888999 899999998876544 44565332 2332221 12333333333 3
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 79999999875
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.53 E-value=0.002 Score=54.26 Aligned_cols=104 Identities=8% Similarity=0.083 Sum_probs=61.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE----ecCCCCCccHHHHHHHHhC--
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF----VNTSEHDRPIQEVIAEMTN-- 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v----i~~~~~~~~~~~~~~~~~~-- 263 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+.++.++.+.+.+ .+-..+ .|...+...+.+.+.....
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 82 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence 4899999987 8999998888888899 66666565544443332 222121 2322221223333333222
Q ss_pred CCccEEEEcccCh-----------------hhHHHHHHHhhc----CCcEEEEEcCC
Q 016933 264 GGVDRSVECTGNI-----------------DNMISAFECVHD----GWGVAVLVGVP 299 (380)
Q Consensus 264 ~~~d~v~d~~g~~-----------------~~~~~~~~~l~~----~~G~~v~~g~~ 299 (380)
+.+|++++++|.. .....++..+.. ..|+++.++..
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~ 139 (254)
T d1sbya1 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV 139 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence 3799999999863 123344555532 12888888654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.51 E-value=0.0064 Score=51.88 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=70.4
Q ss_pred hhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH
Q 016933 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 186 ~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.+.+..++++|++||=+|+| .|.+++.+|+..|+ +|++++.|++..+++++ .|...-+.....+ + . .
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d--~----~-~ 123 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCG-WGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG--W----E-Q 123 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC--G----G-G
T ss_pred HHHHHcCCCCCCEEEEecCc-chHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh--h----h-c
Confidence 34677899999999999986 36778899999999 99999999998887765 3322111111111 1 0 1
Q ss_pred hCCCccEEEE-----cccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVE-----CTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.++.+|.|+. .++.. ..+..+.+.|+|+ |++++...
T Consensus 124 ~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~i 167 (285)
T d1kpga_ 124 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI 167 (285)
T ss_dssp CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEEE
Confidence 1346887754 33332 4577889999997 99886544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.50 E-value=0.0089 Score=46.36 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=53.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-ceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|.|+|.|.+|...+...+..|. +|++.++++++.+.+++.|. +...+..+ .+ ...|+||-++..
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~-------~~-----~~~DiIilavp~- 67 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS-------LL-----QTAKIIFLCTPI- 67 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG-------GG-----TTCSEEEECSCH-
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc-------cc-----cccccccccCcH-
Confidence 58899999999988888888899 99999999999999999885 33322111 11 257999988854
Q ss_pred hhHHHHHHHh
Q 016933 277 DNMISAFECV 286 (380)
Q Consensus 277 ~~~~~~~~~l 286 (380)
+.....++.+
T Consensus 68 ~~~~~vl~~l 77 (165)
T d2f1ka2 68 QLILPTLEKL 77 (165)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 3333344443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.49 E-value=0.0047 Score=52.64 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=70.2
Q ss_pred hhhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHH
Q 016933 185 GATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 185 ~~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~ 260 (380)
..+.+..++++|++||=+|+|- |.++..+++..|+ +|++++.+++..+.+++ .|....+.....+ . .
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d--~-----~ 112 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG--W-----E 112 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC--G-----G
T ss_pred HHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhh--h-----h
Confidence 3456778899999999999763 3456778888899 99999999998887765 3432211111111 1 0
Q ss_pred HhCCCccEEEE-----cccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 261 MTNGGVDRSVE-----CTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 261 ~~~~~~d~v~d-----~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
...+.+|.|+. .++.. ..+..+.+.|+|+ |++++-..
T Consensus 113 ~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~i 157 (280)
T d2fk8a1 113 DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSS 157 (280)
T ss_dssp GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEEe
Confidence 12347888854 33332 4578899999997 99987543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.44 E-value=0.0082 Score=50.45 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHH----HHHhcCCceE-ecCCCCC----ccHHHHHHHH
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFE----EAKKFGVTDF-VNTSEHD----RPIQEVIAEM 261 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~----~~~~lG~~~v-i~~~~~~----~~~~~~~~~~ 261 (380)
.-.|+++||+|+ +++|.+.++.....|+ +|+.. .++++..+ .+++.|.+.. +..+-.+ ..+.+.+.+.
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 346899999987 9999999999999999 66654 55555443 3445676442 2222222 1233333333
Q ss_pred hCCCccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 TNGGVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
. ++.|+++++.|.. .....++..++++ |.++.+..
T Consensus 82 ~-g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s 141 (259)
T d1ja9a_ 82 F-GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS 141 (259)
T ss_dssp H-SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred c-CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence 3 3799999998852 2455677778886 88777754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.43 E-value=0.0065 Score=50.84 Aligned_cols=79 Identities=27% Similarity=0.331 Sum_probs=54.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC--c-eEe--cCCCCC--ccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV--T-DFV--NTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~--~-~vi--~~~~~~--~~~~~~~~~~~~~~ 265 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+.+.+ ++. . ..+ |..+.+ ..+.+.+.+.. ++
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh-CC
Confidence 4789999987 9999999988888999 89999999988776644 332 1 122 332221 12333443333 47
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|+++++.|.
T Consensus 83 iDiLVnnAg~ 92 (251)
T d1zk4a1 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred ceEEEecccc
Confidence 9999999875
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0078 Score=51.07 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=63.5
Q ss_pred CCeE-EEEcC-CHHHHHHHH-HHHHcCCcEEEEEcCChhHHHHH----HhcCCce-E--ecCCCCC--ccHHHHHHHHhC
Q 016933 196 GSSV-AVFGL-GAVGLAAAE-GARIAGASRIIGVDRSSKRFEEA----KKFGVTD-F--VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 196 g~~v-lI~G~-g~~G~~ai~-la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~-v--i~~~~~~--~~~~~~~~~~~~ 263 (380)
|+.| ||+|+ +++|++.+. ||+..|+ +|+..+++.++.+.+ ++.|... + .|..+.+ ..+.+.+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~- 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY- 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence 6667 67787 999998665 6666688 899999999886544 3334322 2 2333322 12334444433
Q ss_pred CCccEEEEcccCh-------------------------hhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRSVECTGNI-------------------------DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+.+|++++..|.. .....++..|++. |+++.++.
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS 138 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS 138 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence 3799999998852 1233445566775 89988865
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.40 E-value=0.0068 Score=50.90 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCC--ccHHHHHHHHhCCC
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~ 265 (380)
|+.+||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+.. ++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-GP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-CS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence 577899987 9999998888888999 899999998876554 34554332 2333322 12333333332 47
Q ss_pred ccEEEEcccC
Q 016933 266 VDRSVECTGN 275 (380)
Q Consensus 266 ~d~v~d~~g~ 275 (380)
+|++++++|.
T Consensus 80 iDilVnnAG~ 89 (257)
T d2rhca1 80 VDVLVNNAGR 89 (257)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEecccc
Confidence 9999999885
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=96.40 E-value=0.0044 Score=52.28 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh-HH----HHHHhcCCceE---ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK-RF----EEAKKFGVTDF---VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~-~~----~~~~~lG~~~v---i~~~~~~--~~~~~~~~~~~~ 263 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.++++.+ +. +.+++.|.+.. .|..+.+ ..+.+.+.+..
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~- 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF- 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence 5789999987 9999998888888999 8888887753 33 33455665432 2333321 12233333333
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 84 G~iDiLVnnAG~ 95 (261)
T d1geea_ 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEeecccee
Confidence 479999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.39 E-value=0.009 Score=46.75 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCC---ceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGV---TDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~---~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
..++++|+|+|+|+++.+++..+...+. +|+.+.|+.++.+.+.+ ++. ...+..++. ....+|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-----------~~~~~di 82 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-----------PLQTYDL 82 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-----------CCSCCSE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhccc-----------cccccce
Confidence 4578899999999999998887776554 89999999988766644 321 112221111 1236899
Q ss_pred EEEcccC
Q 016933 269 SVECTGN 275 (380)
Q Consensus 269 v~d~~g~ 275 (380)
+++|+..
T Consensus 83 iIN~tp~ 89 (171)
T d1p77a1 83 VINATSA 89 (171)
T ss_dssp EEECCCC
T ss_pred eeecccc
Confidence 9999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.38 E-value=0.0086 Score=51.28 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=52.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-----HhcCCce-EecCCCCCc-cHHHHHHHH--hCC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-----KKFGVTD-FVNTSEHDR-PIQEVIAEM--TNG 264 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-----~~lG~~~-vi~~~~~~~-~~~~~~~~~--~~~ 264 (380)
+|+++||+|+ +++|.+.+......|+ +|+.++++.++.+.+ .+.|... .+..+-.+. ...+.+... ..+
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 5799999987 9999999988888999 999999998775433 2344433 232222221 122222221 124
Q ss_pred CccEEEEcccC
Q 016933 265 GVDRSVECTGN 275 (380)
Q Consensus 265 ~~d~v~d~~g~ 275 (380)
++|+++++.|.
T Consensus 103 ~iDilvnnAg~ 113 (294)
T d1w6ua_ 103 HPNIVINNAAG 113 (294)
T ss_dssp SCSEEEECCCC
T ss_pred ccchhhhhhhh
Confidence 79999999885
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0059 Score=51.22 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-c----CCceE----ecCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-F----GVTDF----VNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-l----G~~~v----i~~~~~~--~~~~~~~~~~~ 262 (380)
.|+++||+|+ +++|.+.+......|+ +|+.++++.++.+.+.+ + +...+ .|..+.+ ..+.+.+.+..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 4889999997 9999999998888999 89999999887665432 2 22122 2333322 12333333332
Q ss_pred CCCccEEEEcccCh-----------------hhHHHHHHHhhcC----CcEEEEEcCC
Q 016933 263 NGGVDRSVECTGNI-----------------DNMISAFECVHDG----WGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~~g~~-----------------~~~~~~~~~l~~~----~G~~v~~g~~ 299 (380)
+++|+++++.|.. .....+++.+.+. .|+++.++..
T Consensus 81 -G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 81 -GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp -SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred -CCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 3799999998853 1233445555431 2788888764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.36 E-value=0.0075 Score=50.69 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----c--CCce---EecCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----F--GVTD---FVNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----l--G~~~---vi~~~~~~--~~~~~~~~~~~ 262 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+.+ . +... ..|..+.+ ..+.+.+.+..
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 4789999987 8999999998889999 89999999988665432 2 2221 12433322 12233333333
Q ss_pred CCCccEEEEcccC
Q 016933 263 NGGVDRSVECTGN 275 (380)
Q Consensus 263 ~~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 82 -G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 82 -GRIDGFFNNAGI 93 (258)
T ss_dssp -SCCSEEEECCCC
T ss_pred -CCCCEEEECCcc
Confidence 379999998873
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.33 E-value=0.0083 Score=50.88 Aligned_cols=79 Identities=29% Similarity=0.366 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH----hcCC--ceE----ecCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK----KFGV--TDF----VNTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~----~lG~--~~v----i~~~~~~--~~~~~~~~~~ 261 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+. +.|. ..+ .|..+.+ ..+.+.+.+.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 5789999987 9999999888888999 8999999988766543 3443 122 2333322 1233333333
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +.+|+++++.|.
T Consensus 82 ~-G~iDilVnnAG~ 94 (274)
T d1xhla_ 82 F-GKIDILVNNAGA 94 (274)
T ss_dssp H-SCCCEEEECCCC
T ss_pred c-CCceEEEeeccc
Confidence 3 379999998874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=96.33 E-value=0.0083 Score=50.03 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCCceE---ecCCCCC--ccHHHHHHHHhCCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGV 266 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~ 266 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.++++++ ..+.+++.|.... .|..+.+ ..+.+.+.+.. +++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-G~i 81 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRC 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc-CCC
Confidence 4789999987 8999999999989999 8888887653 3345566775432 2333322 12333333332 479
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|+++++.|.
T Consensus 82 DilVnnAG~ 90 (247)
T d2ew8a1 82 DILVNNAGI 90 (247)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999885
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0093 Score=51.23 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH-hc--------CCceE---ecCCCCC--ccHHHH
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK-KF--------GVTDF---VNTSEHD--RPIQEV 257 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~-~l--------G~~~v---i~~~~~~--~~~~~~ 257 (380)
.-+|+++||+|+ +++|.+.++.....|+ +|+.++++.++.+.+. ++ +...+ .|..+.+ ..+.+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 347899999987 9999999888888999 8999999988765442 22 22221 2333221 122333
Q ss_pred HHHHhCCCccEEEEcccC
Q 016933 258 IAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 258 ~~~~~~~~~d~v~d~~g~ 275 (380)
+.+.. +++|+++++.|.
T Consensus 88 ~~~~~-G~iDiLVnnAg~ 104 (297)
T d1yxma1 88 TLDTF-GKINFLVNNGGG 104 (297)
T ss_dssp HHHHH-SCCCEEEECCCC
T ss_pred HHHHh-CCeEEEEeeccc
Confidence 33332 379999999875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.22 E-value=0.01 Score=50.17 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC--ceE----ecCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV--TDF----VNTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~--~~v----i~~~~~~--~~~~~~~~~~ 261 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+.+ .+. ..+ .|..+.+ ..+.+.+.+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999987 9999999988888999 89999999988765533 332 112 2333322 1233333333
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 83 ~-g~iDilvnnAG~ 95 (272)
T d1xkqa_ 83 F-GKIDVLVNNAGA 95 (272)
T ss_dssp H-SCCCEEEECCCC
T ss_pred h-CCceEEEeCCcc
Confidence 2 379999999774
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.21 E-value=0.0045 Score=52.15 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHH-----HHhcCCceE---ecCCCCC--ccHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEE-----AKKFGVTDF---VNTSEHD--RPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~-----~~~lG~~~v---i~~~~~~--~~~~~~~~~~~~ 263 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++.+. .++.|.+.. .|..+.+ ..+.+.+.+..
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~- 85 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL- 85 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh-
Confidence 4789999987 8999999998888999 89999888766533 234565332 2333322 12333333332
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 86 g~iDilVnnAg~ 97 (260)
T d1h5qa_ 86 GPISGLIANAGV 97 (260)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCcEecccccc
Confidence 479999998874
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0026 Score=53.08 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=69.2
Q ss_pred hhhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH
Q 016933 186 ATLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 186 ~l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~ 261 (380)
.|....++++|++||=+|+|. |..+..+++..|+ +|++++.++...+.+++ .|...-+.....+ +.+ + .
T Consensus 24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d--~~~-~--~ 96 (245)
T d1nkva_ 24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND--AAG-Y--V 96 (245)
T ss_dssp HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC--CTT-C--C
T ss_pred HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhH--Hhh-c--c
Confidence 355778899999999888753 5667788888898 99999999988877665 4543211111111 000 0 1
Q ss_pred hCCCccEEEEcc------cChhhHHHHHHHhhcCCcEEEEEc
Q 016933 262 TNGGVDRSVECT------GNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 262 ~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
..+.||+|+-.- .-...+..+.+.|+|+ |++++..
T Consensus 97 ~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~ 137 (245)
T d1nkva_ 97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 137 (245)
T ss_dssp CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence 223799887532 1235688899999997 9988753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.20 E-value=0.0076 Score=50.82 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=52.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc--eE----ecCCCCC--ccHHHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT--DF----VNTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~--~v----i~~~~~~--~~~~~~~~~~ 261 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++++++.+.+ .|.. .+ .|..+.+ ..+.+.+.+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5788999987 9999999988888999 89999999888765432 3321 12 2333322 1122333222
Q ss_pred hCCCccEEEEcccC
Q 016933 262 TNGGVDRSVECTGN 275 (380)
Q Consensus 262 ~~~~~d~v~d~~g~ 275 (380)
. +++|+++++.|.
T Consensus 83 ~-g~iDilvnnAG~ 95 (264)
T d1spxa_ 83 F-GKLDILVNNAGA 95 (264)
T ss_dssp H-SCCCEEEECCC-
T ss_pred h-CCCCEeeccccc
Confidence 2 479999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0019 Score=56.27 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=67.9
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHh----cC-----------CceE--ecCC
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKK----FG-----------VTDF--VNTS 248 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~----lG-----------~~~v--i~~~ 248 (380)
+....+++||++||=.|+|. |.+++.+|+..|.+ +|++++.+++..+.+++ ++ .+.+ ...+
T Consensus 90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 35667899999999888764 88899999988743 89999999998888764 11 1111 1111
Q ss_pred CCCccHHHHHHHHhCCCccEEE-EcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 249 EHDRPIQEVIAEMTNGGVDRSV-ECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
-.+ + ...+..+.+|.|| |.-.....+..+.+.|+|+ |+++.+-.
T Consensus 169 i~~--~---~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~P 213 (324)
T d2b25a1 169 ISG--A---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 213 (324)
T ss_dssp TTC--C---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred hhh--c---ccccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEeC
Confidence 111 1 1111223578765 4433335789999999997 99987753
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=96.13 E-value=0.021 Score=47.67 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=52.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH-------HHHHHhcCCceE-ecCCCCCc-cHHHHHHHH
Q 016933 192 KPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR-------FEEAKKFGVTDF-VNTSEHDR-PIQEVIAEM 261 (380)
Q Consensus 192 ~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~-------~~~~~~lG~~~v-i~~~~~~~-~~~~~~~~~ 261 (380)
..+|+.++||+|+ |++|++.+..+-..|++.|+.+.++..+ .+.+++.|+... +..+-.+. ...+.+..+
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i 84 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 84 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence 4689999999997 9999998887777898667777665322 233345666432 22222221 233333333
Q ss_pred hCC-CccEEEEcccC
Q 016933 262 TNG-GVDRSVECTGN 275 (380)
Q Consensus 262 ~~~-~~d~v~d~~g~ 275 (380)
... ..|.++++.|.
T Consensus 85 ~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 85 GDDVPLSAVFHAAAT 99 (259)
T ss_dssp CTTSCEEEEEECCCC
T ss_pred ccccccccccccccc
Confidence 233 68999998875
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.13 E-value=0.013 Score=48.94 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=51.4
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCc----cHHHHHHHHhC
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDR----PIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~----~~~~~~~~~~~ 263 (380)
+|+++||+|+ | ++|.+.++.....|+ +|+..+++++..+.+++ .+....+..+-.+. .+.+.+.+..
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~- 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF- 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-
Confidence 5799999997 5 699998888888899 88888888765544433 34333433332221 2333333333
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+++|+++++.|.
T Consensus 85 g~iDilVnnag~ 96 (256)
T d1ulua_ 85 GGLDYLVHAIAF 96 (256)
T ss_dssp SSEEEEEECCCC
T ss_pred CCceEEEecccc
Confidence 379999998864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.12 E-value=0.017 Score=48.37 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=70.9
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cC---CceE-ecCCCCCccHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FG---VTDF-VNTSEHDRPIQEV 257 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG---~~~v-i~~~~~~~~~~~~ 257 (380)
+....+++||++||=.|+| .|.+++.+|+..|- .+|++++.+++..+.+++ ++ .+.+ +...+ ..+
T Consensus 88 Ii~~l~i~PG~~VLE~G~G-sG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d----~~~- 161 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD----LAD- 161 (264)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC----GGG-
T ss_pred HHHHhCCCCCCEEEecCcC-CcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc----ccc-
Confidence 4567889999999988876 38888899998863 399999999999888875 11 1222 11111 100
Q ss_pred HHHHhCCCccEEE-EcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 258 IAEMTNGGVDRSV-ECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 258 ~~~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+..+.+|.|| |.-.....+..+.+.|+++ |+++.+-.
T Consensus 162 -~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~P 201 (264)
T d1i9ga_ 162 -SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 201 (264)
T ss_dssp -CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred -ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEeC
Confidence 001123789765 4443346788999999997 99987743
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.12 E-value=0.03 Score=43.39 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=62.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCC-ceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGV-TDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~-~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++|+|+|.|.+|...+..++..|.. +|++++++++..+.+++.|. +.+....+. ......|+|+-|+.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~dlIila~p 71 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAK----------VEDFSPDFVMLSSP 71 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGG----------GGGTCCSEEEECSC
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhh----------hhccccccccccCC
Confidence 3699999999999888888888743 89999999999999999886 333322111 01125788888876
Q ss_pred Chh---hHHHHHHHhhcCCcEEEEEcCC
Q 016933 275 NID---NMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 275 ~~~---~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
... .+......+.++ -.++.++..
T Consensus 72 ~~~~~~vl~~l~~~~~~~-~ii~d~~s~ 98 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSED-ATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred chhhhhhhhhhhcccccc-ccccccccc
Confidence 532 234445556664 556566554
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.12 E-value=0.015 Score=46.09 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=65.6
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce----------EecCCCCC---ccH
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD----------FVNTSEHD---RPI 254 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~----------vi~~~~~~---~~~ 254 (380)
+....+.+|++||.+|+|. |..++.+|+. |+ +|++++.|+.-++.+++..... ........ .++
T Consensus 13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 3445688999999999863 7788888874 99 9999999999999998732110 00000000 000
Q ss_pred HHHHHHHhCCCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 255 QEVIAEMTNGGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 255 ~~~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+ +.......+|+|++...- ...+..+.++|+++ |++++..
T Consensus 90 ~~-l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~ 138 (201)
T d1pjza_ 90 FA-LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT 138 (201)
T ss_dssp SS-STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred cc-cccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence 00 000011258998875431 23567888999997 9876543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0072 Score=42.03 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+|++|+|+|.|..|+++++++...|+ +|++.+...
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 46889999999999999999999999 899998744
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0088 Score=49.38 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
++++.+||=+|+| .|..+..+++ .|+ +|++++.+++..+.+++.+...++..+..+ + ....+.+|+|+..
T Consensus 40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~~~--l-----~~~~~~fD~ii~~ 109 (246)
T d2avna1 40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKAED--L-----PFPSGAFEAVLAL 109 (246)
T ss_dssp CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCTTS--C-----CSCTTCEEEEEEC
T ss_pred cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeecccccccccccccccccccccccc--c-----ccccccccceeee
Confidence 4577888888887 6888888887 588 899999999999999998776665443332 1 1123479998864
Q ss_pred ccC-------hhhHHHHHHHhhcCCcEEEEE
Q 016933 273 TGN-------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 273 ~g~-------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
... ...+..+.+.|+|+ |.+++.
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~ 139 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPD-GLLIAT 139 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence 331 23577888999997 988754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=96.03 E-value=0.011 Score=49.58 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=64.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh-hHHHHH-----HhcCCceE---ecCCCCC--ccHHHHHHHHh
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS-KRFEEA-----KKFGVTDF---VNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~-~~~~~~-----~~lG~~~v---i~~~~~~--~~~~~~~~~~~ 262 (380)
+|+++||+|+ +++|.+.+......|+ +|+.+++++ ++.+.+ .+.|.... .|..+.+ ..+.+.+.+..
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 6889999987 9999998888888999 899888864 444333 22454332 2333221 12333333333
Q ss_pred CCCccEEEEcccCh-------------------------hhHHHHHHHhhc-CCcEEEEEcCC
Q 016933 263 NGGVDRSVECTGNI-------------------------DNMISAFECVHD-GWGVAVLVGVP 299 (380)
Q Consensus 263 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~ 299 (380)
+++|++++++|.. .....++..+.+ ++|+++.+...
T Consensus 82 -G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~ 143 (260)
T d1x1ta1 82 -GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASA 143 (260)
T ss_dssp -SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred -CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccc
Confidence 4799999998852 123345555543 23899988764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.00 E-value=0.014 Score=48.90 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=50.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCceE---ecCCCCC--ccHHHHHHHHhCCCc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTDF---VNTSEHD--RPIQEVIAEMTNGGV 266 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~v---i~~~~~~--~~~~~~~~~~~~~~~ 266 (380)
+.+||+|+ +++|.+.+......|+ +|+.+++++++.+.+ ++.|.+.. .|..+.+ ..+.+.+.+.. +++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i 79 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GGF 79 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT-TCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh-CCc
Confidence 34688987 8999998888878899 899999999886554 34554332 2333322 12333333322 379
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
|++++++|.
T Consensus 80 DilVnnAG~ 88 (255)
T d1gega_ 80 DVIVNNAGV 88 (255)
T ss_dssp CEEEECCCC
T ss_pred cEEEecccc
Confidence 999999875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=95.96 E-value=0.03 Score=42.56 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=54.6
Q ss_pred eEEEEcCCHHHHHHHH-HHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGLGAVGLAAAE-GARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~-la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|.++|+|.+|.+.+. +.+.-+. ++++.++++++.+.+++ +|....-+.++- ...|+||=++-
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~-~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v-------------~~~Div~lavk- 66 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVETSATLPEL-------------HSDDVLILAVK- 66 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCEEESSCCCC-------------CTTSEEEECSC-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCC-cEEEEeCChhHHHHhhhhcccccccccccc-------------cccceEEEecC-
Confidence 5889999999998776 5554335 99999999998877765 666432211110 14688888875
Q ss_pred hhhHHHHHHHhhcCCcEEE
Q 016933 276 IDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 276 ~~~~~~~~~~l~~~~G~~v 294 (380)
|+.+...++.+.+. ++++
T Consensus 67 P~~~~~v~~~l~~~-~~~v 84 (152)
T d1yqga2 67 PQDMEAACKNIRTN-GALV 84 (152)
T ss_dssp HHHHHHHHTTCCCT-TCEE
T ss_pred HHHHHHhHHHHhhc-ccEE
Confidence 45666666666664 5544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.95 E-value=0.017 Score=48.14 Aligned_cols=95 Identities=23% Similarity=0.281 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCCccE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
.++|++||=+|+|. |.+++.+++ +|+ +|++++.+++..+.+++ .|....+.. .+ +.+ ....+.||+
T Consensus 118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~--~d--~~~---~~~~~~fD~ 187 (254)
T d2nxca1 118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE--GS--LEA---ALPFGPFDL 187 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE--SC--HHH---HGGGCCEEE
T ss_pred cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe--cc--ccc---cccccccch
Confidence 57899999888763 666666555 688 89999999998888765 344322111 11 222 122348999
Q ss_pred EEEcccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 269 SVECTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 269 v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+...... +.+..+.+.|+|+ |++++.|.
T Consensus 188 V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi 219 (254)
T d2nxca1 188 LVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred hhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence 98654432 3456788899997 99987654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.95 E-value=0.048 Score=41.85 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=62.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
+|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.++... .. ..+.++ ..|++|-|+..++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~---~~----~~e~~~-----~~d~ii~~v~~~~ 68 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETA---ST----AKAIAE-----QCDVIITMLPNSP 68 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC---SS----HHHHHH-----HCSEEEECCSSHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhc---cc----HHHHHh-----CCCeEEEEcCCHH
Confidence 58899999999988877777899 89999999999999999887432 11 223232 3789999987765
Q ss_pred hHHHH-------HHHhhcCCcEEEEEcCCC
Q 016933 278 NMISA-------FECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 278 ~~~~~-------~~~l~~~~G~~v~~g~~~ 300 (380)
..... ...+.++ ..++.++...
T Consensus 69 ~v~~v~~~~~~~~~~~~~g-~iiid~sT~~ 97 (161)
T d1vpda2 69 HVKEVALGENGIIEGAKPG-TVLIDMSSIA 97 (161)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECSCCC
T ss_pred HHHHHHhCCcchhhccCCC-CEEEECCCCC
Confidence 55543 3444554 5555555543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0017 Score=53.79 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce--EecCCCCCccHHHHHHHHhCCCccEE-
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD--FVNTSEHDRPIQEVIAEMTNGGVDRS- 269 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~--vi~~~~~~~~~~~~~~~~~~~~~d~v- 269 (380)
..+|.+||=+|+| .|..+..+++..+. +|++++.+++..+.+++..... .+.....+ +......+..+.+|.+
T Consensus 51 ~~~g~~VLdIGcG-~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 51 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL--WEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTTCEEEEEECCT-TSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESC--HHHHGGGSCTTCEEEEE
T ss_pred ccCCCeEEEeecc-chHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccccc--cccccccccccccccee
Confidence 3678899999876 36778888886655 8999999999999888743321 11111111 3333334444578887
Q ss_pred EEcccCh----------hhHHHHHHHhhcCCcEEEEE
Q 016933 270 VECTGNI----------DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 270 ~d~~g~~----------~~~~~~~~~l~~~~G~~v~~ 296 (380)
||.+... ..+..+.+.|+|+ |+++..
T Consensus 127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~ 162 (229)
T d1zx0a1 127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC 162 (229)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred ecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence 5655431 2456788999997 998764
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.88 E-value=0.0044 Score=51.80 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=49.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHH---HcCCcEEEEEcCChhHHHHHHhc---CCc-eE--ecCCCCC--ccHHHHHHHHhC-
Q 016933 197 SSVAVFGL-GAVGLAAAEGAR---IAGASRIIGVDRSSKRFEEAKKF---GVT-DF--VNTSEHD--RPIQEVIAEMTN- 263 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~---~~g~~~vi~~~~~~~~~~~~~~l---G~~-~v--i~~~~~~--~~~~~~~~~~~~- 263 (380)
++|||+|+ +++|++.++... ..|+ +|+.+++++++.+.++++ +.. .+ +|..+.+ ..+.+.++....
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 81 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD 81 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence 57999997 999998775443 3477 899999998876655442 222 12 3443332 123344443333
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|++++..|.
T Consensus 82 ~~iDiLvnNAg~ 93 (248)
T d1snya_ 82 QGLNVLFNNAGI 93 (248)
T ss_dssp GCCSEEEECCCC
T ss_pred CCcceEEeeccc
Confidence 379999998774
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=95.78 E-value=0.042 Score=45.41 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=62.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEE-cCChhHHHHH----HhcCCce-Ee--cCCCCC--ccHHHHHHHHhCCC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGV-DRSSKRFEEA----KKFGVTD-FV--NTSEHD--RPIQEVIAEMTNGG 265 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~-~~~~~~~~~~----~~lG~~~-vi--~~~~~~--~~~~~~~~~~~~~~ 265 (380)
..+||+|+ +++|.+.+......|+ +|+.. .+++++.+.+ ++.|.+. .+ |..+.+ ..+.+.+.+.. ++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CC
Confidence 46788887 9999999888888999 77665 5566655444 3456433 22 333321 12333333332 47
Q ss_pred ccEEEEcccCh-------------------------hhHHHHHHHh--hcCCcEEEEEcCC
Q 016933 266 VDRSVECTGNI-------------------------DNMISAFECV--HDGWGVAVLVGVP 299 (380)
Q Consensus 266 ~d~v~d~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~~ 299 (380)
+|+++++.|.. .....++..| +.+ |+++.++..
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~ 139 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASV 139 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCT
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcCh
Confidence 99999998752 1334455555 444 999998764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.65 E-value=0.0026 Score=52.92 Aligned_cols=75 Identities=24% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC--ccHHHHHHHHhCCCccEEEE
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD--RPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~--~~~~~~~~~~~~~~~d~v~d 271 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+.. ...|..+.+ ..+.+.+.+.. +++|++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~~~~v~~~~~~~~~~~-g~iDiLVn 79 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTDSDAVDRAFTAVEEHQ-GPVEVLVS 79 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTCHHHHHHHHHHHHHHH-SSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCCHHHHHHHHHHHHHhc-CCceEEEe
Confidence 5799999997 8999999999989999 99999888765432211 123333322 12333344433 37999999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
++|.
T Consensus 80 nAG~ 83 (237)
T d1uzma1 80 NAGL 83 (237)
T ss_dssp ECSC
T ss_pred eecc
Confidence 9875
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.54 E-value=0.026 Score=45.19 Aligned_cols=82 Identities=26% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|.+|+|.|.|.+|..++.++...|+ +|++.+.+.++.+....+|++.+ ..++ +..-..|+.+=|.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~~~-----------~~~~~~DI~iPcA 91 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALED-----------VLSTPCDVFAPCA 91 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGG-----------GGGCCCSEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Cccc-----------cccccceeeeccc
Confidence 378999999999999999999999999 99999999999999988887543 2111 1223688888776
Q ss_pred cChhhHHHHHHHhhc
Q 016933 274 GNIDNMISAFECVHD 288 (380)
Q Consensus 274 g~~~~~~~~~~~l~~ 288 (380)
.....-....+.++-
T Consensus 92 ~~~~I~~~~a~~i~a 106 (201)
T d1c1da1 92 MGGVITTEVARTLDC 106 (201)
T ss_dssp CSCCBCHHHHHHCCC
T ss_pred ccccccHHHHhhhhh
Confidence 554444555565544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.49 E-value=0.021 Score=48.13 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=49.9
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH---hcCC-ceEecCCCCC-cc---HHHHHHHHhC
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEAK---KFGV-TDFVNTSEHD-RP---IQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~---~lG~-~~vi~~~~~~-~~---~~~~~~~~~~ 263 (380)
+|+++||+|+ | ++|.+.+..+...|+ +|+.++++++..+.++ +.+. ..++..+..+ .. +.+.+.+..
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~- 81 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL- 81 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc-
Confidence 5899999986 5 699998888889999 8999988875333333 2222 2232222221 12 223333332
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++.+.|.
T Consensus 82 g~id~lV~nag~ 93 (274)
T d2pd4a1 82 GSLDFIVHSVAF 93 (274)
T ss_dssp SCEEEEEECCCC
T ss_pred CCCCeEEeeccc
Confidence 479999988874
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=95.47 E-value=0.013 Score=48.00 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=67.9
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce--EecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD--FVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~--vi~~~~~~~~~~~~~~~ 260 (380)
+.+.++++++++||=+|+| .|..+..+++. |+ +|++++.+++-.+.+++ .+.+. ++..+..+ + .
T Consensus 7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~--l-----~ 76 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ--M-----P 76 (231)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C--C-----C
T ss_pred HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccccc--c-----c
Confidence 4577889999999999986 56777777754 66 89999999987777654 44433 22222111 0 0
Q ss_pred HhCCCccEEEEccc-----C-hhhHHHHHHHhhcCCcEEEEEc
Q 016933 261 MTNGGVDRSVECTG-----N-IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 261 ~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+..+.||+|+-.-. . ...+..+.+.|+|+ |++++..
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~ 118 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 118 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence 12347999975432 2 24578999999997 9988764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=95.47 E-value=0.023 Score=43.43 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=70.4
Q ss_pred hhhhccC-CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC
Q 016933 186 ATLNVAK-PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 186 ~l~~~~~-~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
++.+... +-.|++++|.|=|-+|.-.++-+|.+|+ +|+++..++-+.=.+.-=|. .|.. ..+.+ +
T Consensus 12 ~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~~-------~~~a~-----~ 77 (163)
T d1v8ba1 12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVVT-------LDEIV-----D 77 (163)
T ss_dssp HHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EECC-------HHHHT-----T
T ss_pred HHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccCc-------hhHcc-----c
Confidence 3444433 4689999999999999999999999999 99999988855333322233 2321 22222 2
Q ss_pred CccEEEEcccChhh-HHHHHHHhhcCCcEEEEEcCCC
Q 016933 265 GVDRSVECTGNIDN-MISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 265 ~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
..|+++-++|..+. -..-++.|+++ ..+...|-..
T Consensus 78 ~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GHfd 113 (163)
T d1v8ba1 78 KGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGHFD 113 (163)
T ss_dssp TCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred cCcEEEEcCCCCccccHHHHHHhhCC-eEEEeccccc
Confidence 57999999999764 45778888886 6666666543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.44 E-value=0.0038 Score=52.38 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=50.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc----eEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT----DFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~----~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+.||+|+ +++|++.+......|+ +|+..+++.++.+.+++.+.. .+.+.++ -..+.+.+.+.. +++|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~-~~~~~~~~~~~~-G~iDiLVnN 78 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVSN 78 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH-HHHHHHHHHHHc-CCCCEEEEC
Confidence 6789997 8999998888888999 899999988888777664322 1222222 123444444443 379999987
Q ss_pred cc
Q 016933 273 TG 274 (380)
Q Consensus 273 ~g 274 (380)
.|
T Consensus 79 Ag 80 (252)
T d1zmta1 79 DI 80 (252)
T ss_dssp CC
T ss_pred Cc
Confidence 65
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.38 E-value=0.054 Score=43.12 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...+++++.+|+ +|++.++........ .+.. ..+ +.+.+++ .|+++-++.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~----~~~----l~~~l~~-----sDii~~~~p 105 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY----VDS----LDDLYKQ-----ADVISLHVP 105 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB----CSC----HHHHHHH-----CSEEEECSC
T ss_pred cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee----ecc----ccccccc-----cccccccCC
Confidence 47899999999999999999999999 999998765433222 1211 111 4443333 688877764
Q ss_pred Ch-h---h-HHHHHHHhhcCCcEEEEEcC
Q 016933 275 NI-D---N-MISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~-~---~-~~~~~~~l~~~~G~~v~~g~ 298 (380)
.. + . -...++.++++ ..+|.++-
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~sR 133 (197)
T d1j4aa1 106 DVPANVHMINDESIAKMKQD-VVIVNVSR 133 (197)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred ccccccccccHHHHhhhCCc-cEEEecCc
Confidence 21 1 2 24677888886 77766643
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.32 E-value=0.058 Score=44.39 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=62.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCc------EEEEEcCChhHHHHHH----hcCCce-Ee--cCCCCC--ccHHHHHHHH
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGAS------RIIGVDRSSKRFEEAK----KFGVTD-FV--NTSEHD--RPIQEVIAEM 261 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~------~vi~~~~~~~~~~~~~----~lG~~~-vi--~~~~~~--~~~~~~~~~~ 261 (380)
.|||+|+ +++|.+.+......|++ .|+..++++++++.+. +.|... .+ |..+.+ ..+.+.+.+.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4688997 89999988877778883 3888889988776553 345432 22 333322 1233333333
Q ss_pred hCCCccEEEEcccCh-------------------------hhHHHHHHHhhc-CCcEEEEEcCC
Q 016933 262 TNGGVDRSVECTGNI-------------------------DNMISAFECVHD-GWGVAVLVGVP 299 (380)
Q Consensus 262 ~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~ 299 (380)
. +.+|+++++.|.. .....++..|.+ ++|+++.++..
T Consensus 83 ~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~ 145 (240)
T d2bd0a1 83 Y-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV 145 (240)
T ss_dssp T-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred c-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEech
Confidence 2 3799999998852 123445555633 23899988764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=95.23 E-value=0.039 Score=45.13 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=67.0
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--ecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~~~~~~~~~~ 260 (380)
|...+++++|++||=+|+|. |..+..+++. +. +|++++.|+.-++.+++ .|.+.+ +.-+..+ + .
T Consensus 8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~--~-----~ 77 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES--L-----P 77 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB--C-----C
T ss_pred HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccccc--c-----c
Confidence 45778999999999898763 6777788774 56 89999999987766654 343322 1111111 0 0
Q ss_pred HhCCCccEEEEcccC------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 261 MTNGGVDRSVECTGN------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 261 ~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+..+.||+|+..-.- ...+..+.+.|+|+ |++++..
T Consensus 78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~ 119 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD 119 (234)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence 123479998864321 24588999999997 9988753
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.013 Score=42.16 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCCC-CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 193 PERG-SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 193 ~~~g-~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
+.++ .+|.|+|+|.+|.+.++-|+.+|+ ++++.+.+++
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~ 45 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD 45 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 3444 469999999999999999999999 8999987665
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.18 E-value=0.031 Score=44.07 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=65.0
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~~ 262 (380)
....++++|++||=+|+|. |..++.+|+. +. +|++++.+++..+.+++ .|.. .+- ....+ ..+... .
T Consensus 26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~-~~~gd--a~~~~~--~ 97 (186)
T d1l3ia_ 26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVT-LMEGD--APEALC--K 97 (186)
T ss_dssp HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEE-EEESC--HHHHHT--T
T ss_pred HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceE-EEECc--hhhccc--c
Confidence 3456789999998888642 4555666664 44 89999999998888765 5542 221 11112 222221 1
Q ss_pred CCCccEEEEcccC---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 263 NGGVDRSVECTGN---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 263 ~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+.+|.|+-..+. .+.+..+.+.|+++ |++++...
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~~ 135 (186)
T d1l3ia_ 98 IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTAI 135 (186)
T ss_dssp SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred cCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEee
Confidence 2379988865433 24577888899997 99876643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.13 E-value=0.096 Score=42.02 Aligned_cols=102 Identities=17% Similarity=0.032 Sum_probs=65.2
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
....++||++||=+|+|. |..+..+|+..+-.+|++++.+++..+.+++ .+-...+..+..+... . .....
T Consensus 50 ~~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~---~-~~~~~ 124 (209)
T d1nt2a_ 50 HRLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK---Y-SGIVE 124 (209)
T ss_dssp CCCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGG---T-TTTCC
T ss_pred ccCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccc---c-ccccc
Confidence 346799999999999753 6677788888775599999999988877654 3322222222211100 0 00112
Q ss_pred CccEEEEcccCh----hhHHHHHHHhhcCCcEEEEE
Q 016933 265 GVDRSVECTGNI----DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 265 ~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 296 (380)
.+|+++.....+ ..+..+.+.|+++ |++++.
T Consensus 125 ~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 159 (209)
T d1nt2a_ 125 KVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM 159 (209)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred eEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEE
Confidence 577776654322 2467788999997 998765
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=95.09 E-value=0.02 Score=48.59 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=69.1
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-e--EecCCCCCccHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-D--FVNTSEHDRPIQEVIA 259 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~--vi~~~~~~~~~~~~~~ 259 (380)
|.....++++++||=+|+| .|..+..+|+..|+ +|++++.++...+.+++ .|.. . ++..+..+ +
T Consensus 59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~--l----- 129 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE--I----- 129 (282)
T ss_dssp HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS--C-----
T ss_pred HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccccc--c-----
Confidence 3456789999999999986 46677888888898 89999999988777765 3432 1 22211111 0
Q ss_pred HHhCCCccEEEEccc-----C-hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 260 EMTNGGVDRSVECTG-----N-IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 260 ~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
....+.||+|+-.-. . ...+..+.+.|+|+ |++++...
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~ 173 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 173 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 011236999875322 1 24578999999997 99887653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.07 E-value=0.11 Score=39.79 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=58.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
.+|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+++.+....-+ ..+.+ ...|+++-|+...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~-------~~e~~-----~~~diii~~v~~~ 68 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAARS-------ARDAV-----QGADVVISMLPAS 68 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEECSS-------HHHHH-----TSCSEEEECCSCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhccccch-------hhhhc-----cccCeeeecccch
Confidence 368899999999977776666799 9999999999999998888643211 22212 1367777777765
Q ss_pred hhHHHH-------HHHhhcCCcEEEEEcCC
Q 016933 277 DNMISA-------FECVHDGWGVAVLVGVP 299 (380)
Q Consensus 277 ~~~~~~-------~~~l~~~~G~~v~~g~~ 299 (380)
...... ...+.++ -.++.++..
T Consensus 69 ~~~~~v~~~~~~~~~~l~~g-~iiid~st~ 97 (162)
T d3cuma2 69 QHVEGLYLDDDGLLAHIAPG-TLVLECSTI 97 (162)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECSCC
T ss_pred hhHHHHHhccccccccCCCC-CEEEECCCC
Confidence 544433 3334453 445545444
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.00 E-value=0.16 Score=38.65 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=55.6
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHcCCcEEEEE-cCCh--hHHHHHHhcCCceEecCCCCCccHHHHHHHHhC-CCccEEEE
Q 016933 197 SSVAVFGLGAVGL-AAAEGARIAGASRIIGV-DRSS--KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN-GGVDRSVE 271 (380)
Q Consensus 197 ~~vlI~G~g~~G~-~ai~la~~~g~~~vi~~-~~~~--~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~-~~~d~v~d 271 (380)
=++.|+|+|.+|. +.+++.+....-.++++ +++. ....+.+++|...... ..+.+.+... .++|+||+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~-------~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA-------GVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS-------HHHHHHHSGGGGGEEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccccc-------ceeeeeecccccccCEEEE
Confidence 3689999999987 56677776644366665 3443 3456778888754321 2333333222 26999999
Q ss_pred cccChhhHHHH--HHHhhcCCcEEEEEcCC
Q 016933 272 CTGNIDNMISA--FECVHDGWGVAVLVGVP 299 (380)
Q Consensus 272 ~~g~~~~~~~~--~~~l~~~~G~~v~~g~~ 299 (380)
++....+.... .+.++. |..+.-...
T Consensus 78 ATpag~h~~~~~~~~aa~~--G~~VID~s~ 105 (157)
T d1nvmb1 78 ATSASAHVQNEALLRQAKP--GIRLIDLTP 105 (157)
T ss_dssp CSCHHHHHHHHHHHHHHCT--TCEEEECST
T ss_pred cCCchhHHHhHHHHHHHHc--CCEEEEccc
Confidence 98764455433 334544 555544433
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.052 Score=45.05 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=51.1
Q ss_pred CCCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCC-ccHHHHHHHHhC--
Q 016933 194 ERGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHD-RPIQEVIAEMTN-- 263 (380)
Q Consensus 194 ~~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~-~~~~~~~~~~~~-- 263 (380)
-+|+++||+|+ | ++|.+.+......|+ +|+..+++++..+.+++ .+....+..+..+ ....+.......
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 36899999987 5 688888888888999 78888888765554433 4444433333322 122223333222
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+..|+.+++++.
T Consensus 82 ~~~d~~v~~a~~ 93 (258)
T d1qsga_ 82 PKFDGFVHSIGF 93 (258)
T ss_dssp SSEEEEEECCCC
T ss_pred cccceEEEeecc
Confidence 278999988654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.13 Score=44.25 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=68.4
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc-----------CCc----eEecCCCCC
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF-----------GVT----DFVNTSEHD 251 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l-----------G~~----~vi~~~~~~ 251 (380)
+.+..+++++++||=+|+| .|..++++|+..++.++++++.++...+.+++. |.. .++.-+-.+
T Consensus 143 ~~~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~ 221 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 221 (328)
T ss_dssp HHHHSCCCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred HHHHcCCCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence 4677889999999888876 488888999999987899999999877766542 211 122222222
Q ss_pred ccHHHHHHHHhCCCccEEEEccc--Ch---hhHHHHHHHhhcCCcEEEEEc
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTG--NI---DNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g--~~---~~~~~~~~~l~~~~G~~v~~g 297 (380)
..+.+.+. .+|+|+-..- .+ ..+..+.+.|+|+ |+++..-
T Consensus 222 ~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~ 266 (328)
T d1nw3a_ 222 EEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK 266 (328)
T ss_dssp HHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred cccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence 22333332 2578774211 12 3456778889997 9998764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.92 E-value=0.096 Score=42.61 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=67.6
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhc----CCceEecCCCCCccHHHHHHHHh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKF----GVTDFVNTSEHDRPIQEVIAEMT 262 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~l----G~~~vi~~~~~~~~~~~~~~~~~ 262 (380)
.+...++||++||=+|+|. |..+..+|+..|- .+|++++.+++..+.+++. +....+..+..... .. ...
T Consensus 66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~---~~-~~~ 140 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE---EY-RAL 140 (227)
T ss_dssp CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG---GG-TTT
T ss_pred ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc---cc-ccc
Confidence 3556799999999998763 7788899998863 4999999999988877653 22222222222110 01 011
Q ss_pred CCCccEEEEcccCh----hhHHHHHHHhhcCCcEEEEE
Q 016933 263 NGGVDRSVECTGNI----DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 263 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 296 (380)
...+|+++.-+..+ ..+..+...|+++ |+++++
T Consensus 141 ~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~ 177 (227)
T d1g8aa_ 141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence 23678887655432 2477888899997 988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.011 Score=48.51 Aligned_cols=106 Identities=15% Similarity=0.033 Sum_probs=66.7
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceE-------------ecCCCCCcc-H
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDF-------------VNTSEHDRP-I 254 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~v-------------i~~~~~~~~-~ 254 (380)
+...+.++.+||..|+|. |..+..+|+ .|+ .|++++.|+..++.+++...... .......-+ +
T Consensus 39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 345678899999999875 788888887 699 99999999999988776322110 000000000 0
Q ss_pred HHHHHHH---hCCCccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 255 QEVIAEM---TNGGVDRSVECTGN--------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 255 ~~~~~~~---~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
...+..+ ..+.+|+|+++..- ...+..+.++|+|+ |++++...
T Consensus 116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~ 169 (229)
T d2bzga1 116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL 169 (229)
T ss_dssp ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence 0001111 12368999987531 23567899999997 98776643
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.84 E-value=0.17 Score=38.04 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=63.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChh---HHHHHHhcCCceEecCCCCCcc---------------HH
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSK---RFEEAKKFGVTDFVNTSEHDRP---------------IQ 255 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~---~~~~~~~lG~~~vi~~~~~~~~---------------~~ 255 (380)
++|.|+|+ |.+|.-++.+.+.. .. +|+++..... =.+.++++.+..++..++.... -.
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~ 81 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 81 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence 78999998 99999999999876 45 7777755432 2355567888887654432110 11
Q ss_pred HHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEE
Q 016933 256 EVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 256 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v 294 (380)
+.+.+.....+|+++.++.+-.-+...+.+++.+ -++.
T Consensus 82 ~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g-k~ia 119 (150)
T d1r0ka2 82 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG-KTVA 119 (150)
T ss_dssp HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT-SEEE
T ss_pred cchheecccccceeeeecCchhHHHHHHHHHhcC-CEEE
Confidence 1222233336899988877667788888888884 4443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.023 Score=47.17 Aligned_cols=47 Identities=30% Similarity=0.326 Sum_probs=38.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVT 242 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~ 242 (380)
+|+++||+|+ +++|.+.++.....|+ +|+.+++++++.+.+ ++++..
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~ 52 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN 52 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence 6899999997 9999999999989999 899999888766544 446553
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.71 E-value=0.018 Score=48.27 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce---EecCCCCCccHHHHHHHHhC-
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD---FVNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~---vi~~~~~~~~~~~~~~~~~~- 263 (380)
.+++|++||-.|+| +|..++.+|+...+ +|++++.+++..+++++ .|.+. ++.-+..+ +..
T Consensus 104 ~~~~g~~VlD~~aG-~G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~---------~~~~ 172 (260)
T d2frna1 104 VAKPDELVVDMFAG-IGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD---------FPGE 172 (260)
T ss_dssp HCCTTCEEEETTCT-TTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT---------CCCC
T ss_pred hcCCccEEEECcce-EcHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH---------hccC
Confidence 36889999988764 35556667775445 99999999999888865 34422 23222211 112
Q ss_pred CCccEEE-Ec-ccChhhHHHHHHHhhcCCcEEEEEc
Q 016933 264 GGVDRSV-EC-TGNIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 264 ~~~d~v~-d~-~g~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+.+|.|+ +. ..+.+.+..++..++++ |.+..+.
T Consensus 173 ~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~ 207 (260)
T d2frna1 173 NIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHN 207 (260)
T ss_dssp SCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEe
Confidence 2688664 32 34446788899999996 8776543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.012 Score=39.18 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
++|.|+|+|.+|.|.++-|+.+|. ++++++.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence 478999999999999999999999 8888876544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.63 E-value=0.048 Score=46.27 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC--------ceE-ecCCCCCccHHHHHHHHhCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV--------TDF-VNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~--------~~v-i~~~~~~~~~~~~~~~~~~~ 264 (380)
...++|||+|+|. |.++-.+++..+..+|.+++.+++-.+.++++-. ..+ +... | -.+.+++...+
T Consensus 79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~--D--a~~~l~~~~~~ 153 (290)
T d1xj5a_ 79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG--D--GVAFLKNAAEG 153 (290)
T ss_dssp SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES--C--HHHHHHTSCTT
T ss_pred CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc--c--HHHHHhhcccc
Confidence 3447899998654 4455577777777689999999999999887431 111 1111 1 44556555445
Q ss_pred CccEEE-Eccc---------ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 265 GVDRSV-ECTG---------NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 265 ~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.+|+|+ |+.. +.+.+..+-++|+++ |.++.-..
T Consensus 154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~ 196 (290)
T d1xj5a_ 154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQAE 196 (290)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence 899865 5443 235688999999997 99886543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.62 E-value=0.039 Score=41.95 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|.++|+|.+|.+.+.-....|. ++++.+++.++.+.+ +++|...+- + ..+.++ ..|+||=|+- +
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~---~----~~~~~~-----~~dvIilavk-p 67 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM---S----HQDLID-----QVDLVILGIK-P 67 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS---S----HHHHHH-----TCSEEEECSC-G
T ss_pred EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec---h----hhhhhh-----ccceeeeecc-h
Confidence 57889999999987775555677 899999998887665 567764321 1 222222 4799999985 4
Q ss_pred hhHHHHHHHhhcCCcEEEEEc
Q 016933 277 DNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 277 ~~~~~~~~~l~~~~G~~v~~g 297 (380)
+.+...++.+.++ ..++.+.
T Consensus 68 ~~~~~vl~~l~~~-~~iis~~ 87 (152)
T d2ahra2 68 QLFETVLKPLHFK-QPIISMA 87 (152)
T ss_dssp GGHHHHHTTSCCC-SCEEECC
T ss_pred HhHHHHhhhcccc-eeEeccc
Confidence 7778888888875 6666443
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=94.58 E-value=0.055 Score=45.10 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=52.9
Q ss_pred CCCCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChhHH-H-HHHhcCCce---EecCCCCC--ccHHHHHHHHh
Q 016933 193 PERGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSKRF-E-EAKKFGVTD---FVNTSEHD--RPIQEVIAEMT 262 (380)
Q Consensus 193 ~~~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~~~-~-~~~~lG~~~---vi~~~~~~--~~~~~~~~~~~ 262 (380)
+-+|+++||+|+ | ++|.+.++-+...|+ +|+.+.+++++. + ..++++... ..|..+.+ ....+.+.+..
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence 346899999984 4 599998888888999 888888887764 3 334455433 12222211 23444455444
Q ss_pred CC--CccEEEEcccC
Q 016933 263 NG--GVDRSVECTGN 275 (380)
Q Consensus 263 ~~--~~d~v~d~~g~ 275 (380)
.. ..|+++++.|.
T Consensus 82 ~~~~~ld~~i~~ag~ 96 (268)
T d2h7ma1 82 GAGNKLDGVVHSIGF 96 (268)
T ss_dssp CTTCCEEEEEECCCC
T ss_pred ccCCCcceeeecccc
Confidence 33 68999998873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.024 Score=48.86 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=33.8
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
+.+...+.+|++||-+|+| .|.+++.+|+ .|+++|++++.++.-.
T Consensus 27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~ 71 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILY 71 (311)
T ss_dssp HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHH
T ss_pred HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence 4445566789999999986 5666776666 5877999999888543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.40 E-value=0.073 Score=43.35 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=69.9
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH----
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM---- 261 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~---- 261 (380)
.+..+.++||-+|.+ +|+.++.+|+.+.- .+++.++.+++..+.+++ .|...-+.....+ ..+.+.++
T Consensus 55 ~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~--a~~~L~~l~~~~ 131 (227)
T d1susa1 55 LKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP--ALPVLDEMIKDE 131 (227)
T ss_dssp HHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHCG
T ss_pred HHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehH--HHHHHHHHHhcc
Confidence 334456789988864 58889999998742 399999999988877765 5664433332232 44444444
Q ss_pred -hCCCccEEE-EcccC--hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 262 -TNGGVDRSV-ECTGN--IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 262 -~~~~~d~v~-d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
..+.||.|| |+--. ...++.+++.++++ |.++.-...
T Consensus 132 ~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DNvl 172 (227)
T d1susa1 132 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDNTL 172 (227)
T ss_dssp GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEETTT
T ss_pred ccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEccCC
Confidence 234799986 44322 24578999999997 888766543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.37 E-value=0.16 Score=39.32 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=63.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcC--ChhHHHHHHhcCCceEecCCCCCccHHH-------HHHHHhCCCcc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRIIGVDR--SSKRFEEAKKFGVTDFVNTSEHDRPIQE-------VIAEMTNGGVD 267 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~--~~~~~~~~~~lG~~~vi~~~~~~~~~~~-------~~~~~~~~~~d 267 (380)
+|.|.|-|-+|...+..+... .. .++++.. +......+.+.+.+......+....+.+ .+.+. ..++|
T Consensus 4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vD 81 (172)
T d2czca2 4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL-LEKVD 81 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH-HTTCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhh-hccCC
Confidence 588999999999887776543 34 6666632 3345566667765543321111000111 01111 12699
Q ss_pred EEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 268 RSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
+|+||+|.....+.+-.++..+ -+.++.+.+..
T Consensus 82 vViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~~ 114 (172)
T d2czca2 82 IIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKA 114 (172)
T ss_dssp EEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCG
T ss_pred EEEECCCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence 9999999877778888999997 88888877543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.29 E-value=0.073 Score=42.98 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=47.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+|||+|+ |.+|...+..+...|.. .|+.+.+++++.+.+.. +... +.-+-.+ . +.+.+... ++|.|+++.+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~-~~~d~~~--~-~~~~~~~~-~~d~vi~~a~ 77 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADV-FIGDITD--A-DSINPAFQ-GIDALVILTS 77 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTE-EECCTTS--H-HHHHHHHT-TCSEEEECCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEE-EEeeecc--c-cccccccc-cceeeEEEEe
Confidence 58999997 99999999998888853 57777788877655432 3322 2222222 2 22333332 5899999876
Q ss_pred C
Q 016933 275 N 275 (380)
Q Consensus 275 ~ 275 (380)
.
T Consensus 78 ~ 78 (252)
T d2q46a1 78 A 78 (252)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.29 E-value=0.21 Score=40.57 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=65.2
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC----ceEecCCCCCccHHHHHHHHhC
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV----TDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~----~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.+...++||++||=+|+| .|..+..+|+.....+|++++.+++..+.+++.-. ...+..+..... .... ..
T Consensus 67 l~~l~ikpG~~VLDlGcG-sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~---~~~~-~~ 141 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGAS-AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ---EYAN-IV 141 (230)
T ss_dssp CCCCCCCTTCEEEEESCC-SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG---GGTT-TC
T ss_pred HHhCCCCCCCEEEEeCEE-cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc---cccc-cc
Confidence 356679999999999986 37777888887644599999999998887776422 122222222110 0000 01
Q ss_pred CCccEEEEcccCh----hhHHHHHHHhhcCCcEEEEE
Q 016933 264 GGVDRSVECTGNI----DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 264 ~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~ 296 (380)
..+|+++...... ..+..+...|+++ |.+++.
T Consensus 142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~ 177 (230)
T d1g8sa_ 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence 1456666655432 2467788889997 988765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.27 E-value=0.1 Score=42.75 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=64.5
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCce-EecCCCCCccHHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTD-FVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~-vi~~~~~~~~~~~~~~~~ 261 (380)
++......+.++||=+|+|. |..+..+++ .|+ +|++++.+++-++.+++. +... ++.-+- .++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---------~~l 100 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---------LEI 100 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---------GGC
T ss_pred HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehhh---------hhc
Confidence 34445667778999999874 777777777 588 899999999888887763 3221 221111 111
Q ss_pred h-CCCccEEEEcccC---------hhhHHHHHHHhhcCCcEEEE
Q 016933 262 T-NGGVDRSVECTGN---------IDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 262 ~-~~~~d~v~d~~g~---------~~~~~~~~~~l~~~~G~~v~ 295 (380)
. ++.+|+|+...+. ...+..+.++|+|+ |.+++
T Consensus 101 ~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii 143 (251)
T d1wzna1 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT 143 (251)
T ss_dssp CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence 1 2379998875432 13577899999997 98875
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.20 E-value=0.02 Score=45.27 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+++|+|+|+|..|+.++..++..|++.|+++++++
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 57899999999999999999999985587887655
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.17 E-value=0.41 Score=35.14 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=42.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGL-GAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|.|.|+ |-+|.+.+..+... +. ++++.....+....+. ..++|+++|.+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~~~~~~~~-------------------------~~~~DvvIDFS~p 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAGDPLSLLT-------------------------DGNTEVVIDFTHP 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTTCCTHHHH-------------------------TTTCSEEEECCCT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCchhhhc-------------------------cccCCEEEEcccH
Confidence 5789997 99999988877654 56 5544322111111111 2256777777654
Q ss_pred hhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 276 IDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 276 ~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+...++..... |.-+.+|.+.
T Consensus 55 -~~~~~~~~~~~~~-~~~~ViGTTG 77 (135)
T d1yl7a1 55 -DVVMGNLEFLIDN-GIHAVVGTTG 77 (135)
T ss_dssp -TTHHHHHHHHHHT-TCEEEECCCC
T ss_pred -HHHHHHHHHHHhc-CCCEEEeccc
Confidence 4444444444443 5555666654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.011 Score=45.73 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=53.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCce-----EecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTD-----FVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~-----vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+|+|+|+|.+|.+.+..+...|. .|..+++++++.+..+..+.+. .+..+. .+.+ +.+|++|-+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~D~iii~ 70 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-----PDFL-----ATSDLLLVT 70 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-----HHHH-----HTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccch-----hhhh-----cccceEEEe
Confidence 68999999999987777777898 8999988876554333333211 111111 1111 258999999
Q ss_pred ccChhhHHHHHHHh----hcCCcEEEEEc
Q 016933 273 TGNIDNMISAFECV----HDGWGVAVLVG 297 (380)
Q Consensus 273 ~g~~~~~~~~~~~l----~~~~G~~v~~g 297 (380)
+-.. .+...++.+ .++ ..++.+.
T Consensus 71 vka~-~~~~~~~~l~~~~~~~-~~Iv~~q 97 (167)
T d1ks9a2 71 LKAW-QVSDAVKSLASTLPVT-TPILLIH 97 (167)
T ss_dssp SCGG-GHHHHHHHHHTTSCTT-SCEEEEC
T ss_pred eccc-chHHHHHhhccccCcc-cEEeecc
Confidence 9874 344444444 343 4565553
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.14 E-value=0.046 Score=47.48 Aligned_cols=48 Identities=29% Similarity=0.308 Sum_probs=39.4
Q ss_pred ccCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 190 VAKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
..-+++|++|||+|+ |-+|...+..+...|+ +|+++.++.++.+.++.
T Consensus 5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQK 53 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred CCCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHHH
Confidence 345788999999997 9999988887777899 89998898877766544
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.14 Score=45.41 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=67.8
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC---------------CceE-ecCCCC
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG---------------VTDF-VNTSEH 250 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG---------------~~~v-i~~~~~ 250 (380)
+++..++++|+++|=+|+| +|..++++|+..|+.++++++.++...+.+++.. .... +.-+..
T Consensus 208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 4577889999998777876 5899999999999879999999998777775421 1111 111111
Q ss_pred CccHHHHHHHHhCCCccEEEEc-c-cC---hhhHHHHHHHhhcCCcEEEEEc
Q 016933 251 DRPIQEVIAEMTNGGVDRSVEC-T-GN---IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~v~d~-~-g~---~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+....+ ... ..+|+++-. . -. ...+..+.+.|+|| |+++...
T Consensus 287 ~~~~~d---~~~-~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~ 333 (406)
T d1u2za_ 287 DNNRVA---ELI-PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK 333 (406)
T ss_dssp TCHHHH---HHG-GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred hccccc---ccc-ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence 111211 111 146777642 1 11 23467888899997 9998764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=93.97 E-value=0.11 Score=41.04 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|+++.|+|.|.+|...+++++.+|. +|++.++...........+... ..+ +.+.++. .|+|.-+..
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~~~----l~~ll~~-----sD~v~l~~p 112 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---HDS----LDSLLSV-----SQFFSLNAP 112 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---CSS----HHHHHHH-----CSEEEECCC
T ss_pred cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---cCC----HHHHHhh-----CCeEEecCC
Confidence 47999999999999999999999999 8999877554333333322211 111 3333322 577766543
Q ss_pred C-hh---h-HHHHHHHhhcCCcEEEEEcC
Q 016933 275 N-ID---N-MISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~-~~---~-~~~~~~~l~~~~G~~v~~g~ 298 (380)
- ++ . -...++.++++ ..+|.++-
T Consensus 113 lt~~T~~li~~~~l~~mk~~-a~lIN~sR 140 (191)
T d1gdha1 113 STPETRYFFNKATIKSLPQG-AIVVNTAR 140 (191)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred CCchHhheecHHHhhCcCCc-cEEEecCC
Confidence 2 11 1 22666777775 66665543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=93.87 E-value=0.46 Score=35.42 Aligned_cols=90 Identities=17% Similarity=0.099 Sum_probs=59.4
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC--CccEEEEcc
Q 016933 197 SSVAVFG-LGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG--GVDRSVECT 273 (380)
Q Consensus 197 ~~vlI~G-~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~--~~d~v~d~~ 273 (380)
++|+|+| .|.+|...+...+..|+ .|.+.+++..........+++.++...... ...+.+.+..+. .=.+++|+.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~v~~~~~~~~~~~~iiiD~~ 87 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVPIN-LTLETIERLKPYLTENMLLADLT 87 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSCGG-GHHHHHHHHGGGCCTTSEEEECC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccchh-hheeeeecccccccCCceEEEec
Confidence 5799999 69999999998888999 899999988776666666777665443322 244444444332 235888887
Q ss_pred cChhhHHHHHHHhhc
Q 016933 274 GNIDNMISAFECVHD 288 (380)
Q Consensus 274 g~~~~~~~~~~~l~~ 288 (380)
+........+....+
T Consensus 88 Svk~~~~~~~~~~~~ 102 (152)
T d2pv7a2 88 SVKREPLAKMLEVHT 102 (152)
T ss_dssp SCCHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHcc
Confidence 754443333333333
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.84 E-value=0.11 Score=37.58 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
++++++++|+|+|.+|.-++..++..|. +|..+.+++.
T Consensus 27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~ 64 (121)
T d1d7ya2 27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR 64 (121)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence 4677899999999999999999999999 8888877653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.83 E-value=0.065 Score=38.72 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=34.9
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.+.....++++|+|+|+|.+|+-.++.++.+|. +|..+.+.+
T Consensus 14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence 344556788999999999999999999999998 888886654
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.53 Score=40.80 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCC----------------
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEH---------------- 250 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~---------------- 250 (380)
+...+++++.|+..++|..|.+.+..|+.+|.+-++++. .+++|.+.++.+|++.+......
T Consensus 90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~ 169 (355)
T d1jbqa_ 90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLK 169 (355)
T ss_dssp HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHH
T ss_pred HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHH
Confidence 445567777776667899999999999999995444443 46689999999999765421110
Q ss_pred --------------Cc-------cHHHHHHHHhCCCccEEEEcccChhhHH---HHHHHhhcCCcEEEEEcC
Q 016933 251 --------------DR-------PIQEVIAEMTNGGVDRSVECTGNIDNMI---SAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 251 --------------~~-------~~~~~~~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g~ 298 (380)
+. .....+.+..++.+|.++-++|+..++. ..++...+. -+++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep 240 (355)
T d1jbqa_ 170 NEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP 240 (355)
T ss_dssp HHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred HhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence 00 0112233333457899999999866655 344445555 67766644
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.75 E-value=0.36 Score=36.09 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKR 232 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~ 232 (380)
..+.+|.|+|+|.+|...+..+...+ +.+++.++.++++
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~ 43 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK 43 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence 34678999999999998888887766 4589999988876
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.71 E-value=0.089 Score=42.24 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=61.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCce-EecCCCCCccHHHHHHHHhCCCcc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTD-FVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
++++++||=+|+|. |..+..+++ .|+ +|++++.|++..+.+++ .+... .+..+..+ + ....+.+|
T Consensus 35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~--l-----~~~~~~fD 104 (226)
T d1ve3a1 35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK--L-----SFEDKTFD 104 (226)
T ss_dssp CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS--C-----CSCTTCEE
T ss_pred cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccccc--c-----cccCcCce
Confidence 56888999999864 777788887 477 89999999998877765 33221 22111111 0 01123789
Q ss_pred EEEEcccC--------hhhHHHHHHHhhcCCcEEEEE
Q 016933 268 RSVECTGN--------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 268 ~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+-...- ...+..+.+.|+|+ |++++.
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~ 140 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY 140 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence 98764331 12577899999997 998754
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=93.71 E-value=0.54 Score=39.37 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=69.5
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCCC--------------
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEHD-------------- 251 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~~-------------- 251 (380)
.+...+.++..|+...+|..|++++..|+.+|.+-++.+. .++.|.+.++.+|++.++...+.+
T Consensus 52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~ 131 (292)
T d2bhsa1 52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR 131 (292)
T ss_dssp HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred HHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence 3445566677666667899999999999999995444442 367888999999997544222210
Q ss_pred ------------c-------cHHHHHHHHhCCCccEEEEcccChhhHHHHHHH---hhcCCcEEEEEcC
Q 016933 252 ------------R-------PIQEVIAEMTNGGVDRSVECTGNIDNMISAFEC---VHDGWGVAVLVGV 298 (380)
Q Consensus 252 ------------~-------~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~---l~~~~G~~v~~g~ 298 (380)
. .....+.+..++.+|+++-++|+..++.-+... ..+. .+++.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Vep 199 (292)
T d2bhsa1 132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQP 199 (292)
T ss_dssp TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEEE
T ss_pred ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEecc
Confidence 0 011223333344689999998876665544444 4454 66665543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.68 E-value=0.38 Score=37.03 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=37.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
.+|.|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 46 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA 46 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence 578999999999987777777899 89999999999988877654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.66 E-value=0.098 Score=41.38 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|++|.|+|.|.+|...+++++.+|+ +|++.++...+. .....+...+ .+ +.+.++. .|+|.-++
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~---~~----l~~ll~~-----sD~i~~~~ 112 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV---ST----LQDLLFH-----SDCVTLHC 112 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC---SS----HHHHHHH-----CSEEEECC
T ss_pred eeCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc---cc----hhhcccc-----CCEEEEee
Confidence 357899999999999999999999999 999987754432 2223343221 11 3333322 57776554
Q ss_pred cC-hhh----HHHHHHHhhcCCcEEEEEcC
Q 016933 274 GN-IDN----MISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~-~~~----~~~~~~~l~~~~G~~v~~g~ 298 (380)
.. +++ -...++.++++ ..++.++-
T Consensus 113 plt~~T~~li~~~~l~~mk~~-a~lIN~sR 141 (193)
T d1mx3a1 113 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR 141 (193)
T ss_dssp CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred cccccchhhhhHHHHhccCCC-CeEEecCC
Confidence 42 111 22556677775 66665543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.53 E-value=0.031 Score=47.20 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+++|+|+|+|..|++|+..++..|. +|++++.+
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence 5789999999999999999999999 89999764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.52 E-value=0.12 Score=40.64 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEe----cCCCC---CccHHHHHHHHhCCCccEEE
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFV----NTSEH---DRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi----~~~~~---~~~~~~~~~~~~~~~~d~v~ 270 (380)
+|.|+|+|..|.+.+.++-..|. +|....++++..+.+++-+-...+ ...+. ..++.+.+ .+.|+++
T Consensus 9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~-----~~ad~ii 82 (189)
T d1n1ea2 9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-----NGAEIIL 82 (189)
T ss_dssp EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-----TTCSCEE
T ss_pred eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc-----CCCCEEE
Confidence 59999999999998887777777 899999999988888764421110 00000 01133333 2479999
Q ss_pred EcccChhhHHHHHHHh
Q 016933 271 ECTGNIDNMISAFECV 286 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l 286 (380)
-++.+ ..+...++.+
T Consensus 83 iavPs-~~~~~~~~~~ 97 (189)
T d1n1ea2 83 FVIPT-QFLRGFFEKS 97 (189)
T ss_dssp ECSCH-HHHHHHHHHH
T ss_pred EcCcH-HHHHHHHHHH
Confidence 99987 5555555544
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=93.50 E-value=0.16 Score=43.28 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=45.4
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC-----ChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEE
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDR-----SSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSV 270 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~-----~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~ 270 (380)
+|||+|+ |-+|...+..+...|+ +|+++++ ..++.+.++..+--.++.-+-.+ .+.+.+...+ .+|+||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~---~~~l~~~~~~~~~d~Vi 77 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN---KNDVTRLITKYMPDSCF 77 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC---HHHHHHHHHHHCCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCC---HHHHHHHHHhcCCceEE
Confidence 6999998 9999999888888899 8988863 22233444444322333222222 1123333333 689999
Q ss_pred EcccC
Q 016933 271 ECTGN 275 (380)
Q Consensus 271 d~~g~ 275 (380)
++.+.
T Consensus 78 h~aa~ 82 (338)
T d1orra_ 78 HLAGQ 82 (338)
T ss_dssp ECCCC
T ss_pred eeccc
Confidence 98753
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.045 Score=42.87 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
...+++|+|+|+|+.|+.|+..+...|. +|+.++..+
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~ 76 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS 76 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence 4556899999999999999999999999 999997754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.08 Score=41.89 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=35.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
++|.|+|+|.+|...++++...|+ +|+..+.+++.++.+++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~ 45 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKK 45 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHh
Confidence 579999999999998888888999 99999999987665543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=93.45 E-value=0.079 Score=45.94 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=47.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHH-HHHhc----CCceEecCCCCCccHHHHHHHHhCC-Ccc
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFE-EAKKF----GVTDFVNTSEHDRPIQEVIAEMTNG-GVD 267 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~-~~~~l----G~~~vi~~~~~~~~~~~~~~~~~~~-~~d 267 (380)
++++|||+|+ |-+|...+..+...|+ .|++++++..+.. +++.. +...+ .-+=.+ . +.+.+.... .+|
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~-~~Dl~d--~-~~l~~~~~~~~~~ 81 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSE-IGDIRD--Q-NKLLESIREFQPE 81 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEE-ECCTTC--H-HHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEE-EeeccC--h-Hhhhhhhhhchhh
Confidence 4689999997 9999999999999999 8999988665322 22221 22222 111112 1 222233223 689
Q ss_pred EEEEcccC
Q 016933 268 RSVECTGN 275 (380)
Q Consensus 268 ~v~d~~g~ 275 (380)
+++.+++.
T Consensus 82 ~v~~~aa~ 89 (356)
T d1rkxa_ 82 IVFHMAAQ 89 (356)
T ss_dssp EEEECCSC
T ss_pred hhhhhhcc
Confidence 99998864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.17 Score=37.97 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
.|+++||+|+|.+|.--+..+...|+ +|++++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57999999999999999999999999 7877743
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.43 E-value=0.2 Score=41.36 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=29.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
+.||+|+ +++|.+.+..+...|+ +|+.++++.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence 5688887 8999999999999999 88888887554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.42 E-value=0.032 Score=48.11 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=55.9
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHH---HHHhcCCce---EecCCCCCccHHHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFE---EAKKFGVTD---FVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~---~~~~lG~~~---vi~~~~~~~~~~~~~~~ 260 (380)
+.+...+.+|++||-+|+|. |.+++.+|+ .|+.+|++++.++.-.. ..+..+... ++.-+..+ + .
T Consensus 25 i~~~~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~--~-----~ 95 (316)
T d1oria_ 25 MFHNRHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE--V-----E 95 (316)
T ss_dssp HHTCHHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT--C-----C
T ss_pred HHhccccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHH--c-----c
Confidence 33334456889999999864 677776666 68779999998764322 223334322 22222111 0 0
Q ss_pred HhCCCccEEEEc-ccC--------hhhHHHHHHHhhcCCcEEE
Q 016933 261 MTNGGVDRSVEC-TGN--------IDNMISAFECVHDGWGVAV 294 (380)
Q Consensus 261 ~~~~~~d~v~d~-~g~--------~~~~~~~~~~l~~~~G~~v 294 (380)
...+.+|+|+.- .+. +..+...-+.|+|+ |+++
T Consensus 96 ~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii 137 (316)
T d1oria_ 96 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF 137 (316)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence 112378998652 221 12344556789997 8875
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.25 E-value=0.095 Score=45.17 Aligned_cols=102 Identities=25% Similarity=0.272 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh--CCCc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT--NGGV 266 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~--~~~~ 266 (380)
+++|++||=.++| +|..++.+|+ .|+.+|++++.+++..+++++ .|...-+.....| ..+.+..+. ++.|
T Consensus 143 ~~~g~~VLDl~~g-~G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d--~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGDRVLDVFTY-TGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS--AFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTCEEEETTCT-TTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHTTCCE
T ss_pred cCCCCeeecccCc-ccchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeech--hhhhhHHHHhccCCC
Confidence 5789998876542 2334444444 477799999999999888866 4543211111222 334443332 2379
Q ss_pred cEEEE-cc--cC------------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 267 DRSVE-CT--GN------------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 267 d~v~d-~~--g~------------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
|+|+- .- +. ..++..+.++++|+ |.++.+...
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence 99874 21 11 12566778899997 998887544
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.22 E-value=0.049 Score=45.03 Aligned_cols=34 Identities=35% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
..++|+|+|+|..|++++..+...|. +|++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 35789999999999999999988999 99999864
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.19 E-value=0.42 Score=32.75 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCCHHHHHH-HHHHHHcCCcEEEEEcCC-hhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 192 KPERGSSVAVFGLGAVGLAA-AEGARIAGASRIIGVDRS-SKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~a-i~la~~~g~~~vi~~~~~-~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
.++..++|.++|-|++|..+ +++++..|+ .|.+.|.. ....+.+++.|......++... . .+.|+|
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~--i---------~~~d~v 71 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAEEH--I---------EGASVV 71 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCGGG--G---------TTCSEE
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcccc--C---------CCCCEE
Confidence 35667889999987778666 788999999 99999875 3455677778986444332211 1 257887
Q ss_pred EEcccChh
Q 016933 270 VECTGNID 277 (380)
Q Consensus 270 ~d~~g~~~ 277 (380)
+-..+-+.
T Consensus 72 V~S~AI~~ 79 (96)
T d1p3da1 72 VVSSAIKD 79 (96)
T ss_dssp EECTTSCT
T ss_pred EECCCcCC
Confidence 76665433
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.17 E-value=0.08 Score=41.23 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~ 237 (380)
-++++|||+|+|+++.+++..+. +.++|.++.|+.+|.+.+.
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~--~~~~i~I~nR~~~ka~~l~ 57 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELA--KDNNIIIANRTVEKAEALA 57 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHT--SSSEEEEECSSHHHHHHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHc--cccceeeehhhhhHHHHHH
Confidence 47789999999999998776664 3448999999988876553
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.2 Score=39.11 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
-.|+++.|+|.|.+|...+++++.+|. +|++.++...+... .+.+... .+ +.+.+++ .|+|.-++
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~----~~----l~ell~~-----sDiv~~~~ 106 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL----LS----LDDLLAR-----ADFISVHL 106 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE----CC----HHHHHHH-----CSEEEECC
T ss_pred ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee----cc----HHHHHhh-----CCEEEEcC
Confidence 357899999999999999999999999 99999876544333 3334321 11 4333333 58877665
Q ss_pred cCh-h---hH-HHHHHHhhcCCcEEEEEcC
Q 016933 274 GNI-D---NM-ISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 274 g~~-~---~~-~~~~~~l~~~~G~~v~~g~ 298 (380)
.-. + .+ ...++.++++ ..++.++-
T Consensus 107 Plt~~T~~lin~~~l~~mk~~-a~lIN~sR 135 (184)
T d1ygya1 107 PKTPETAGLIDKEALAKTKPG-VIIVNAAR 135 (184)
T ss_dssp CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred CCCchhhhhhhHHHHhhhCCC-ceEEEecc
Confidence 422 1 22 3667777775 66666654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=93.04 E-value=0.37 Score=37.29 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=76.7
Q ss_pred eEEEEcCCHHHHH-HHHHHHHcCCc-EEEE-EcCChhHHHH-HHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLA-AAEGARIAGAS-RIIG-VDRSSKRFEE-AKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~-ai~la~~~g~~-~vi~-~~~~~~~~~~-~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|.|.+|.- .+...+..+-. ++++ .++++++.+. .++++...+++ + +.+.+. ...+|+|+-++
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--~----~~ell~---~~~id~v~I~t 75 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--S----YEELLE---SGLVDAVDLTL 75 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--C----HHHHHH---SSCCSEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee--e----eecccc---ccccceeeccc
Confidence 5789999999864 46666654321 5554 4666666554 45577655542 2 444332 23799999998
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCCCCCceeecccc-ccc--cccEE-EeeeecCCCCCCChHHHHHHHHcCCCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPI-NVL--NERTL-KGTFFGNYKPRTDLPSVVDMYMNKQLE 345 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~--~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (380)
....+.+.+..++.. |+-+++..+.....-+.... ... ++..+ .+...........+.++.+++++|++.
T Consensus 76 p~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig 149 (181)
T d1zh8a1 76 PVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN 149 (181)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence 886778888887777 56666655432211111111 111 22333 222211001123467888889998764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=93.02 E-value=0.27 Score=38.60 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--ecCCCCCccHHHHHHHHhCCCc
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--VNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--i~~~~~~~~~~~~~~~~~~~~~ 266 (380)
+++| +||=+|+| .|..+..+++ .|+ +|++++.+++.++.+++ .|.+.+ ...+-.... ..+.|
T Consensus 29 ~~~g-rvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--------~~~~f 96 (198)
T d2i6ga1 29 VAPG-RTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--------FDGEY 96 (198)
T ss_dssp SCSC-EEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--------CCCCE
T ss_pred CCCC-cEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccccc--------ccccc
Confidence 3444 78888987 6888888886 588 89999999988877654 444422 111111100 12378
Q ss_pred cEEEEccc-----C---hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 267 DRSVECTG-----N---IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 267 d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+|+...- . ...++.+.++|+++ |.+++...
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 135 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA 135 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 99886331 1 13677888889997 99887643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=92.95 E-value=0.12 Score=40.55 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+.++.|+|.|.+|...+++++.+|. +|++.++........++.+.... .+ +.+.+ ...|+|.-+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~---~~----l~~~l-----~~sD~v~~~~p 109 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH---AT----REDMY-----PVCDVVTLNCP 109 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC---SS----HHHHG-----GGCSEEEECSC
T ss_pred cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc---CC----HHHHH-----Hhccchhhccc
Confidence 57899999999999999999999999 89999876655555555443221 11 22211 13567655543
Q ss_pred Chh----h-HHHHHHHhhcCCcEEEEEc
Q 016933 275 NID----N-MISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 275 ~~~----~-~~~~~~~l~~~~G~~v~~g 297 (380)
-.+ . -...++.++++ ..+|.++
T Consensus 110 lt~~T~~li~~~~l~~mk~g-a~lIN~a 136 (188)
T d2naca1 110 LHPETEHMINDETLKLFKRG-AYIVNTA 136 (188)
T ss_dssp CCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred ccccchhhhHHHHHHhCCCC-CEEEecC
Confidence 211 1 23566667665 5555554
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.28 Score=41.21 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=43.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCc--EEEEEcCChhHHH----HHHhcC---Cce-E--ecCCCCCccHHHHHHHHhC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGAS--RIIGVDRSSKRFE----EAKKFG---VTD-F--VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~--~vi~~~~~~~~~~----~~~~lG---~~~-v--i~~~~~~~~~~~~~~~~~~ 263 (380)
+.+||+|+ +++|.+.+......|++ .|+...++.++.+ .++++. ... . .|..+. ....+.+.+...
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~-~~~~~~~~~~~~ 81 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDS-KSVAAARERVTE 81 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCH-HHHHHHHHTCTT
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccch-Hhhhhhhhhccc
Confidence 34577787 99999988887778883 2333344433332 233332 221 2 233332 223344444444
Q ss_pred CCccEEEEcccC
Q 016933 264 GGVDRSVECTGN 275 (380)
Q Consensus 264 ~~~d~v~d~~g~ 275 (380)
+.+|+++++.|.
T Consensus 82 g~idilvnnag~ 93 (285)
T d1jtva_ 82 GRVDVLVCNAGL 93 (285)
T ss_dssp SCCSEEEECCCC
T ss_pred cchhhhhhcccc
Confidence 589999998875
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.23 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=26.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
+.|||+|+ |-+|...+..+...|. +|+++++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~ 33 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN 33 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence 57999997 9999988888888898 8888864
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.11 Score=41.91 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=67.8
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH---
Q 016933 190 VAKPERGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM--- 261 (380)
Q Consensus 190 ~~~~~~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~--- 261 (380)
..+..+.++||=+|.+ .|+.++.+|+.+. -.+|++++.+++..+.+++ .|....+.....+ ..+.+.+.
T Consensus 54 L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gd--a~e~l~~~~~~ 130 (219)
T d2avda1 54 LARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP--ALETLDELLAA 130 (219)
T ss_dssp HHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC--HHHHHHHHHHT
T ss_pred HHHccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEee--hhhcchhhhhh
Confidence 3445556889999874 4788889998763 1299999999998777665 4554323222222 33434332
Q ss_pred -hCCCccEEEEcccCh---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 262 -TNGGVDRSVECTGNI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 262 -~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..+.+|.||--.... ..++.+++.|+++ |.++.-..
T Consensus 131 ~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~Dn~ 170 (219)
T d2avda1 131 GEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV 170 (219)
T ss_dssp TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred cccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEeCC
Confidence 233799986544332 3477999999996 88876544
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.79 E-value=0.33 Score=36.35 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+.-....|. .+++.++.+++....+..+.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~ 44 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTV 44 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhcc
Confidence 57889999999998888888898 88888777666555554343
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.77 E-value=0.084 Score=37.90 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++++|+|+|.+|.-+++.+..+|. +|..+.+.+
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence 4789999999999999999999999 888886654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.67 E-value=0.085 Score=37.99 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
++..++|+|+|+|.+|.-.++.+..+|. +|..+.+.+
T Consensus 19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 55 (117)
T d1onfa2 19 IKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN 55 (117)
T ss_dssp CCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred cCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence 4456899999999999999999999999 898886654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.59 E-value=0.3 Score=37.26 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=58.9
Q ss_pred eEEEEcCCHHHHH-HHHHHHHc-CCcEEEEEcCChhHHHHH-HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGLGAVGLA-AAEGARIA-GASRIIGVDRSSKRFEEA-KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~g~~G~~-ai~la~~~-g~~~vi~~~~~~~~~~~~-~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|.|+|+|.+|.- .+...+.. +. .+++++.++++.+.+ ++++...+++ + +.+.+ ...+|+|+-++.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~--~----~~~ll----~~~iD~V~I~tp 71 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCT--D----YRDVL----QYGVDAVMIHAA 71 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCS--S----TTGGG----GGCCSEEEECSC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccc--c----HHHhc----ccccceeccccc
Confidence 5789999999854 45555544 45 677777887776655 4477654322 2 11111 126899999998
Q ss_pred ChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 275 NIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 275 ~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
...+.+.+.+++..+ .-+++..+
T Consensus 72 ~~~H~~~~~~al~~g--k~V~~EKP 94 (167)
T d1xeaa1 72 TDVHSTLAAFFLHLG--IPTFVDKP 94 (167)
T ss_dssp GGGHHHHHHHHHHTT--CCEEEESC
T ss_pred ccccccccccccccc--cccccCCC
Confidence 878888888888874 44666554
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.46 Score=38.77 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
..+|+|+|+|++|..++..+-..|.++++.+|.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 62 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 62 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 478999999999999999999999999999874
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=92.57 E-value=0.045 Score=41.48 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=50.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChhh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDN 278 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~ 278 (380)
|-++|+|.+|.+.+...+..+. .+.+.+|+.++.+.+.+.+.....+..+. -...|+||=|+.. +.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~~------------~~~~DiVil~v~d-~~ 67 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEKH------------PELNGVVFVIVPD-RY 67 (153)
T ss_dssp CEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCC------------CC---CEEECSCT-TT
T ss_pred EEEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhhh------------hccCcEEEEeccc-hh
Confidence 3467999999987766554332 44567899999888888665443332221 1257999999976 67
Q ss_pred HHHHHHHhhcCCcEEE
Q 016933 279 MISAFECVHDGWGVAV 294 (380)
Q Consensus 279 ~~~~~~~l~~~~G~~v 294 (380)
+......++.. ++++
T Consensus 68 i~~v~~~l~~~-~~iv 82 (153)
T d2i76a2 68 IKTVANHLNLG-DAVL 82 (153)
T ss_dssp HHHHHTTTCCS-SCCE
T ss_pred hhHHHhhhccc-ceee
Confidence 77777878654 4443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.11 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=27.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+.+||+|+ |-+|...+..+...|. +|+++++..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 57899997 9999988888888898 999998743
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=92.33 E-value=0.55 Score=36.00 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=61.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC--ChhHHHHHHhcCCceEecCCCCCccHHH-------HHHHHhCCCccE
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDR--SSKRFEEAKKFGVTDFVNTSEHDRPIQE-------VIAEMTNGGVDR 268 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~--~~~~~~~~~~lG~~~vi~~~~~~~~~~~-------~~~~~~~~~~d~ 268 (380)
+|.|.|-|-+|...+.++...+--.++++.. .......+..++.+......+....+.+ ...++. .++|+
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vDv 81 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEADI 81 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCSE
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCCCE
Confidence 6889999999999888776554226666643 2344456666665543322111000000 011111 26999
Q ss_pred EEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 269 SVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 269 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
|+||+|.-...+.+-..+..+ -+.++.+...
T Consensus 82 ViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~~ 112 (171)
T d1cf2o1 82 VIDCTPEGIGAKNLKMYKEKG-IKAIFQGGEK 112 (171)
T ss_dssp EEECCSTTHHHHHHHHHHHTT-CEEEECTTSC
T ss_pred EEEccCCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 999999877777888888886 7777776543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.30 E-value=0.063 Score=45.52 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc----CCceE---ecCCCCCccHHHHHHHHhC-
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF----GVTDF---VNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l----G~~~v---i~~~~~~~~~~~~~~~~~~- 263 (380)
+.+++.+||=+|+| .|..++.+|+. |+ +|++++.|++-++.+++. +.... .+..+.+ +...-.....
T Consensus 53 ~~~~~~~vLD~GcG-~G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 127 (292)
T d1xvaa_ 53 RQHGCHRVLDVACG-TGVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN--WLTLDKDVPAG 127 (292)
T ss_dssp HHTTCCEEEESSCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC--GGGHHHHSCCT
T ss_pred hhcCCCEEEEecCC-CcHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecc--ccccccccCCC
Confidence 34567788888875 37778888875 88 899999999988877652 21110 0001111 2111122222
Q ss_pred CCccEEEEcccC--------------hhhHHHHHHHhhcCCcEEEE
Q 016933 264 GGVDRSVECTGN--------------IDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 264 ~~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~ 295 (380)
+.+|.|+..... ...+..+.+.|+|+ |.+++
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~ 172 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI 172 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence 379998864321 12588999999997 98876
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.22 E-value=0.084 Score=45.01 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.....++|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~ 63 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE 63 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 34556789999999999999999988999 899997654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.21 E-value=0.34 Score=41.08 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--eEecCCCC---CccHHHHHHHHhCCCccE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--DFVNTSEH---DRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--~vi~~~~~---~~~~~~~~~~~~~~~~d~ 268 (380)
...++|||+|+|. |..+-.+++.....+|.+++.+++-.+.++++-.. ..++...- -.+..+.+++ +.+.+|+
T Consensus 105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEE
T ss_pred CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCE
Confidence 3457899998764 44455777777766999999999999999884321 01110000 0114455654 4458999
Q ss_pred EEE-cc---c------ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 269 SVE-CT---G------NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 269 v~d-~~---g------~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+- .. + +.+.+..+.++|+++ |.++.-..
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~ 221 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE 221 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence 863 22 1 124577888999997 99887643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=92.19 E-value=0.091 Score=44.09 Aligned_cols=97 Identities=22% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcC-----C---ceE-ecCCCCCccHHHHHHHHhCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFG-----V---TDF-VNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG-----~---~~v-i~~~~~~~~~~~~~~~~~~~ 264 (380)
...++|||+|+|. |..+..+++..+..+|.+++.+++=.+.++++- + .++ +... | ..+.+++ +..
T Consensus 74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~--D--~~~~l~~-~~~ 147 (274)
T d1iy9a_ 74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD--D--GFMHIAK-SEN 147 (274)
T ss_dssp SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES--C--SHHHHHT-CCS
T ss_pred CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec--h--HHHHHhh-cCC
Confidence 3457999998754 555667777777779999999999888888743 1 011 1111 1 2333443 234
Q ss_pred CccEEE-Eccc---------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSV-ECTG---------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+|+|+ |... +.+.+..+-++|+++ |.++.-.
T Consensus 148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~ 189 (274)
T d1iy9a_ 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (274)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence 899985 4432 235688999999997 9988654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.74 Score=34.37 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=61.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHHc--CCcEEEEEcCChhH---HHHHHhcCCceEecCCCCC-ccHH---------------
Q 016933 198 SVAVFGL-GAVGLAAAEGARIA--GASRIIGVDRSSKR---FEEAKKFGVTDFVNTSEHD-RPIQ--------------- 255 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~--g~~~vi~~~~~~~~---~~~~~~lG~~~vi~~~~~~-~~~~--------------- 255 (380)
+|.|+|+ |.+|.-++.+.+.. .. +|+++.....- .+.++++.+..++-.++.. ..+.
T Consensus 3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g 81 (151)
T d1q0qa2 3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG 81 (151)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence 6899998 99999999999877 35 67666543322 3445668887776544321 1111
Q ss_pred -HHHHHHhCC-CccEEEEcccChhhHHHHHHHhhcCCcEE
Q 016933 256 -EVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVA 293 (380)
Q Consensus 256 -~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~ 293 (380)
+.+.++... .+|+|+.++.+-.-+...+..++.+ -++
T Consensus 82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~g-k~i 120 (151)
T d1q0qa2 82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAG-KTI 120 (151)
T ss_dssp HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTT-CEE
T ss_pred hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcC-CeE
Confidence 122222223 7899999887778888888888884 443
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.21 Score=42.99 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=43.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC----ChhHHHHHHh---cCCceE-ecCCCCCccHHHHHHHHhCCCccE
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDR----SSKRFEEAKK---FGVTDF-VNTSEHDRPIQEVIAEMTNGGVDR 268 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~----~~~~~~~~~~---lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~ 268 (380)
+|||+|+ |-+|...+..+...|. +|+++++ ........+. -++..+ .|..+. ..+.+.++. .++|+
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~l~~~~~~---~~~d~ 76 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE-ALMTEILHD---HAIDT 76 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCH-HHHHHHHHH---TTCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCH-HHHHHHHhc---cCCCE
Confidence 5999997 9999999998888898 8888864 2222333322 233322 122221 112222222 27999
Q ss_pred EEEccc
Q 016933 269 SVECTG 274 (380)
Q Consensus 269 v~d~~g 274 (380)
||++++
T Consensus 77 ViHlAa 82 (338)
T d1udca_ 77 VIHFAG 82 (338)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.17 E-value=0.14 Score=45.21 Aligned_cols=31 Identities=35% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
|.+|||+|+ |-+|...+..+...|+ +|++++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD 32 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD 32 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence 688999997 9999999998888999 899986
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.12 E-value=0.18 Score=40.82 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
-.|.+|+|.|.|.+|..+++++...|+ ++++++.+..+.+.+.. .|... ++.++ +..-..|+.+=|
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~~-~~~~~-----------~~~~~cDIl~Pc 103 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADA-VAPNA-----------IYGVTCDIFAPC 103 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEE-CCGGG-----------TTTCCCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCcc-cCCcc-----------cccccccEeccc
Confidence 468999999999999999999999999 99999998888766654 56543 22111 112267777766
Q ss_pred ccChhhHHHHHHHhhc
Q 016933 273 TGNIDNMISAFECVHD 288 (380)
Q Consensus 273 ~g~~~~~~~~~~~l~~ 288 (380)
.-....-......++-
T Consensus 104 A~~~~I~~~~~~~l~a 119 (230)
T d1leha1 104 ALGAVLNDFTIPQLKA 119 (230)
T ss_dssp SCSCCBSTTHHHHCCC
T ss_pred ccccccChHHhhccCc
Confidence 6553333344444443
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.04 E-value=0.14 Score=37.09 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.-.++++|+|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus 26 ~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~ 63 (123)
T d1nhpa2 26 VDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD 63 (123)
T ss_dssp TCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred hccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence 34567899999999999999999999999 888886654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.03 E-value=1.2 Score=36.39 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
-.|.+|+|.|.|.+|..+++++...|+ +|++++
T Consensus 34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs 66 (255)
T d1bgva1 34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS 66 (255)
T ss_dssp STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence 467899999999999999999999999 887774
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.99 E-value=0.12 Score=37.22 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
..++++|+|+|.+|+-.++....+|. +|..+.+.+
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence 34889999999999999999999999 788886553
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.94 E-value=0.097 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.+.+++|+|+|+|..|+.++..++..|. .|+.++.++
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence 4567899999999999999999999999 888887655
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.06 Score=43.90 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=45.3
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEEEc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
+++|||+|+ |.+|...++.+...|. .+|++++|++.+...-+.-..... .|..+. +.+..... ++|+++.+
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~-----~~~~~~~~-~~d~vi~~ 87 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL-----DDYASAFQ-GHDVGFCC 87 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGG-----GGGGGGGS-SCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccc-----cccccccc-cccccccc
Confidence 478999998 9999998888877774 489999886543322111112111 222221 12222222 68999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
+|.
T Consensus 88 ~~~ 90 (232)
T d2bkaa1 88 LGT 90 (232)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.14 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD 54 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence 3689999999999999999999999 888886654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.70 E-value=0.33 Score=40.69 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
.|.+|+|.|-|.+|..+++.+...|+ +|++++
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs 66 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG 66 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 57899999999999999999999999 888875
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.65 E-value=0.5 Score=36.52 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEEEE-cCChhHHHH-HHhcCCce-EecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRIIGV-DRSSKRFEE-AKKFGVTD-FVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi~~-~~~~~~~~~-~~~lG~~~-vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|.|.+|...+...+.. ++ +++++ ++++++.+. .++++... .-.+++ +.+.+. ...+|+|+-++
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~ll~---~~~iD~v~I~t 74 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIHGS----YESLLE---DPEIDALYVPL 74 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEESS----HHHHHH---CTTCCEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeecCc----HHHhhh---ccccceeeecc
Confidence 478999999998888777766 55 66655 666666444 45566421 101112 433332 23799999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
....+.+.+..++.. |.-+++..+
T Consensus 75 p~~~h~~~~~~~l~~--g~~v~~EKP 98 (184)
T d1ydwa1 75 PTSLHVEWAIKAAEK--GKHILLEKP 98 (184)
T ss_dssp CGGGHHHHHHHHHTT--TCEEEECSS
T ss_pred cchhhcchhhhhhhc--cceeecccc
Confidence 887888888888887 555666554
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.69 Score=39.09 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=67.0
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCC----------------
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEH---------------- 250 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~---------------- 250 (380)
+...+.+++.|+...+|..|.+++..|+.+|.+-++++. .++.|.+.++.+|++.+......
T Consensus 54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~ 133 (310)
T d1y7la1 54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD 133 (310)
T ss_dssp HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence 445567777777667899999999999999996555553 35678888899999765421110
Q ss_pred ------------Cc-------cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhh
Q 016933 251 ------------DR-------PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVH 287 (380)
Q Consensus 251 ------------~~-------~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~ 287 (380)
+. .....+.+..++.+|.++-++|+..++.-+...++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk 189 (310)
T d1y7la1 134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK 189 (310)
T ss_dssp TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence 00 01223344445579999999998777766666664
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.63 E-value=0.37 Score=37.11 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=37.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV 241 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~ 241 (380)
+|.|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.+.
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~ 45 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA 45 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence 58889999999987777777899 89999999999988877665
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.62 E-value=0.57 Score=36.15 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=49.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh--hHHHHHHhcCCceEecCCCC------CccHHHHHHHHhCCCccEE
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS--KRFEEAKKFGVTDFVNTSEH------DRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~--~~~~~~~~lG~~~vi~~~~~------~~~~~~~~~~~~~~~~d~v 269 (380)
+|.|+|+|..|.+.+..+-..|. +|....+.. +..+.+++-.-...+..... ..++.+.+ ...|+|
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~ad~I 75 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-----ENAEVV 75 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-----TTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-----hccchh
Confidence 68899999999988777777787 888887643 33444433221100000000 01122222 258999
Q ss_pred EEcccChhhHHHHHHHhhc
Q 016933 270 VECTGNIDNMISAFECVHD 288 (380)
Q Consensus 270 ~d~~g~~~~~~~~~~~l~~ 288 (380)
+-++.. ..+...++.+.+
T Consensus 76 i~avps-~~~~~~~~~l~~ 93 (180)
T d1txga2 76 LLGVST-DGVLPVMSRILP 93 (180)
T ss_dssp EECSCG-GGHHHHHHHHTT
T ss_pred hcccch-hhhHHHHHhhcc
Confidence 999987 566666665555
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.54 E-value=0.14 Score=39.79 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=33.7
Q ss_pred eEEEE-cCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 198 SVAVF-GLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 198 ~vlI~-G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+|.|+ |+|.+|.+.++.+...|+ +|+..+|++++.+.+.+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKAA 42 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence 57888 569999999999999999 89999999988766644
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.50 E-value=0.13 Score=42.08 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+.-++|+|+|+|..|++++..+...|. +|+++++.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 344679999999999999999999999 89999763
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=1.3 Score=32.74 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=59.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH----HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR----FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~----~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
-+.++|.|.|.+|...++.+...|. .|++++.++++ .+.+...|... +.-+..+ .+.+++..-..+|.++-
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~v-i~Gd~~d---~~~L~~a~i~~a~~vi~ 77 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADV-IPGDSND---SSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEE-EESCTTS---HHHHHHHTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEE-EEccCcc---hHHHHHhccccCCEEEE
Confidence 3579999999999999999999998 78888777654 22233345543 3223332 23444544447899998
Q ss_pred cccChhh---HHHHHHHhhcCCcEEEEE
Q 016933 272 CTGNIDN---MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~~g~~~~---~~~~~~~l~~~~G~~v~~ 296 (380)
+++.... .....+.+.+. -+++..
T Consensus 78 ~~~~d~~n~~~~~~~r~~~~~-~~iia~ 104 (153)
T d1id1a_ 78 LSDNDADNAFVVLSAKDMSSD-VKTVLA 104 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred ccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence 8887432 22334445554 455433
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.49 E-value=0.43 Score=34.66 Aligned_cols=72 Identities=11% Similarity=0.233 Sum_probs=47.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccCh
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNI 276 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~ 276 (380)
+|.|+|+ |-+|++..++++..+..-+..++.+.. .. + ..+|+++|.+..
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------~~---------~---------~~~DVvIDFS~p- 51 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------EE---------L---------DSPDVVIDFSSP- 51 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------EE---------C---------SCCSEEEECSCG-
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------HH---------h---------ccCCEEEEecCH-
Confidence 5889997 999999999999888833333332110 00 0 247888888866
Q ss_pred hhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 277 DNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 277 ~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+...++..... +.-+.+|.+.
T Consensus 52 ~~~~~~l~~~~~~-~~p~ViGTTG 74 (128)
T d1vm6a3 52 EALPKTVDLCKKY-RAGLVLGTTA 74 (128)
T ss_dssp GGHHHHHHHHHHH-TCEEEECCCS
T ss_pred HHHHHHHHHHHhc-CCCEEEEcCC
Confidence 5555555555554 6666777764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=0.15 Score=36.89 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=30.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++++|+|+|.+|+-.++++..+|+ +|..+.+.+
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence 3689999999999999999999999 898886643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.37 E-value=0.12 Score=40.59 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=34.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
++|.|+|+|.+|...++++...|+ +|+..+.+++.++...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~ 45 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLA 45 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhh
Confidence 569999999999988888888899 89999999987665543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.36 E-value=0.35 Score=41.22 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=28.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+++||+|+ |-+|...+..+...|+ +|+++++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence 57899998 9999999999988999 89999874
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.23 E-value=0.18 Score=37.06 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++++++++|+|+|.+|.-++..++.+|. +|..+.+.+
T Consensus 31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~ 68 (133)
T d1q1ra2 31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA 68 (133)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence 35667899999999999999999999999 888886654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.07 E-value=0.11 Score=37.60 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
..++++|+|+|.+|+-.+++.+.+|. +|..+.+++.
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~ 59 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE 59 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence 35789999999999999999999999 8999876543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=91.05 E-value=1.3 Score=29.66 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=46.8
Q ss_pred eEEEEcCCHHHHHH-HHHHHHcCCcEEEEEcCCh-hHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGLGAVGLAA-AEGARIAGASRIIGVDRSS-KRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~g~~G~~a-i~la~~~g~~~vi~~~~~~-~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|-++|-|++|..+ +++++..|+ .|.+.|..+ +..+.|+++|+......+... + .++|+|+-+..-
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~--i---------~~~d~vV~SsAI 70 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSADN--W---------YDPDLVIKTPAV 70 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCTTS--C---------CCCSEEEECTTC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecccc--c---------CCCCEEEEecCc
Confidence 46677877777754 688889999 999998876 566778999986544322221 1 257888776654
Q ss_pred hh
Q 016933 276 ID 277 (380)
Q Consensus 276 ~~ 277 (380)
++
T Consensus 71 ~~ 72 (89)
T d1j6ua1 71 RD 72 (89)
T ss_dssp CT
T ss_pred CC
Confidence 33
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.98 E-value=0.44 Score=39.78 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--------HHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--------RFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--------~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
-.+|||+|+ |.+|...+..+...|. +|+++.++.. +...++..+++.+ ..+-.+ . +.+.+... +.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v-~~d~~d--~-~~~~~~~~-~~ 76 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI-EASLDD--H-QRLVDALK-QV 76 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEE-CCCSSC--H-HHHHHHHT-TC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCcccchhHHHHHhhhccCCcEEE-Eeeccc--c-hhhhhhcc-Cc
Confidence 356999997 9999999988888898 8888877542 2333344555433 222122 2 22333333 56
Q ss_pred cEEEEcccC
Q 016933 267 DRSVECTGN 275 (380)
Q Consensus 267 d~v~d~~g~ 275 (380)
+.++.+.+.
T Consensus 77 ~~~~~~~~~ 85 (312)
T d1qyda_ 77 DVVISALAG 85 (312)
T ss_dssp SEEEECCCC
T ss_pred chhhhhhhh
Confidence 778877653
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.87 E-value=0.094 Score=45.28 Aligned_cols=95 Identities=24% Similarity=0.288 Sum_probs=53.2
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHH----HhcCCce---EecCCCCCccHHHHHHHH
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEA----KKFGVTD---FVNTSEHDRPIQEVIAEM 261 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~----~~lG~~~---vi~~~~~~~~~~~~~~~~ 261 (380)
+.....+|++||-+|+| .|.+++.+|+ .|+++|++++.++ ..+.+ ++.+... ++.-+..+ + .+
T Consensus 32 ~~~~~~~~~~VLDlGcG-tG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~--l-----~~ 101 (328)
T d1g6q1_ 32 QNKDLFKDKIVLDVGCG-TGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED--V-----HL 101 (328)
T ss_dssp HHHHHHTTCEEEEETCT-TSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT--S-----CC
T ss_pred hccccCCcCEEEEeCCC-CCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh--c-----cC
Confidence 33445678999999976 3666655555 6887999999885 23333 3344322 22222111 1 01
Q ss_pred hCCCccEEEEcc-c----Ch----hhHHHHHHHhhcCCcEEE
Q 016933 262 TNGGVDRSVECT-G----NI----DNMISAFECVHDGWGVAV 294 (380)
Q Consensus 262 ~~~~~d~v~d~~-g----~~----~~~~~~~~~l~~~~G~~v 294 (380)
..+.+|+|+... + .. ..+...-+.|+|+ |+++
T Consensus 102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii 142 (328)
T d1g6q1_ 102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF 142 (328)
T ss_dssp SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred cccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence 123789887532 1 11 1344445788996 8774
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.064 Score=45.91 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=27.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
++|||+|+ |-+|...+..+...|. +|+++++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 57999998 9999998888888899 8988864
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.80 E-value=0.12 Score=41.16 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...+++++.+|+ +|++.++...+.. ... +...+ +.+.++. .|++.-++.
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~---~~~----~~~~~----l~~l~~~-----~D~v~~~~p 106 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGD---HPD----FDYVS----LEDLFKQ-----SDVIDLHVP 106 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSC---CTT----CEECC----HHHHHHH-----CSEEEECCC
T ss_pred cceeeeeeecccccccccccccccce-eeeccCCccchhh---hcc----hhHHH----HHHHHHh-----cccceeeec
Confidence 46899999999999999999999999 9999977543210 001 11111 3333322 577766553
Q ss_pred C-hh----hHHHHHHHhhcCCcEEEEEcC
Q 016933 275 N-ID----NMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~-~~----~~~~~~~~l~~~~G~~v~~g~ 298 (380)
. ++ .-...++.|+++ ..++.++-
T Consensus 107 lt~~T~~li~~~~l~~mk~~-a~lIN~aR 134 (199)
T d1dxya1 107 GIEQNTHIINEAAFNLMKPG-AIVINTAR 134 (199)
T ss_dssp CCGGGTTSBCHHHHHHSCTT-EEEEECSC
T ss_pred ccccccccccHHHhhccCCc-eEEEeccc
Confidence 2 22 123677788886 66666653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.72 E-value=0.15 Score=36.87 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=28.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.++++|+|+|.+|+-.+++++.+|+ +|..+.++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence 3679999999999999999999999 77777554
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.69 E-value=0.52 Score=38.16 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHH-HHcCCcEEEEEc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGA-RIAGASRIIGVD 227 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la-~~~g~~~vi~~~ 227 (380)
-+|.+|+|.|.|.+|..+++.+ +..|+ +|++++
T Consensus 29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs 62 (234)
T d1b26a1 29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS 62 (234)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence 4688999999999999888876 67899 888775
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.42 Score=40.07 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--------eE-ecCCCCCccHHHHHHHHhCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--------DF-VNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--------~v-i~~~~~~~~~~~~~~~~~~~ 264 (380)
...++|||+|+|. |..+-.+++..+..+|++++.+++-.+.++++-.. ++ +.. .| ..+.+++ +.+
T Consensus 77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~--~D--a~~~l~~-~~~ 150 (285)
T d2o07a1 77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GD--GFEFMKQ-NQD 150 (285)
T ss_dssp SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SC--HHHHHHT-CSS
T ss_pred cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE--cc--HHHHHhc-CCC
Confidence 3457899998754 44555677776767999999999998888874310 11 111 12 4444544 334
Q ss_pred CccEEE-Eccc---------ChhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSV-ECTG---------NIDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+|+|+ |... +.+.+..+-++|+++ |.++.-.
T Consensus 151 ~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 192 (285)
T d2o07a1 151 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG 192 (285)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence 899975 4432 124577888999997 9887654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.60 E-value=0.19 Score=35.79 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=29.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++++|+|+|.+|.-+++.++.+|+ +|..+.+.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence 3789999999999999999999999 888886653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.58 E-value=0.13 Score=42.56 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|+|+|+|..|++++.+++..|...|+++.+++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 589999999999999999999965787876644
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.56 E-value=1.5 Score=33.60 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=57.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCC--hhHHHHHHhcCCceEecCCC----------CCccHHHHHHHHhCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRIIGVDRS--SKRFEEAKKFGVTDFVNTSE----------HDRPIQEVIAEMTNG 264 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~--~~~~~~~~~lG~~~vi~~~~----------~~~~~~~~~~~~~~~ 264 (380)
+|.|.|-|-+|...+..+... .. .++++... ......+...+.......+. ....+.... .
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~ 76 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K 76 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence 578999999999998888755 45 77777432 23334444433322111100 001121111 1
Q ss_pred CccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 265 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 265 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++|+|+||+|.....+.+-.++..+ -++++.+..
T Consensus 77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~ 110 (178)
T d1b7go1 77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGE 110 (178)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCC
Confidence 4899999999866677778888775 677766554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.55 E-value=0.2 Score=36.44 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+..++++|+|+|.+|+-.++..+.+|. +|..+.+.
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~ 58 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM 58 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence 345899999999999999999999999 88888554
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.14 Score=43.64 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
++..+|+|+|+|..|+.|+..+...|. +|+++..++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 455679999999999999999999999 899986543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.21 Score=36.24 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=29.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
++++|+|+|.+|+-.++.++.+|. +|..+.+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence 689999999999999999999999 888887654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.89 Score=35.30 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.+.+|+|+|.|.+|...+++++.+|. +|++.++..... ........+ +.+.++. .|++.-+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-------~~~~~~~~~----l~ell~~-----sDii~i~~p 105 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLP-------LGNATQVQH----LSDLLNM-----SDVVSLHVP 105 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCC-------CTTCEECSC----HHHHHHH-----CSEEEECCC
T ss_pred cceEEEEeecccchhhhhhhcccccc-eEeeccccccch-------hhhhhhhhh----HHHHHhh-----ccceeeccc
Confidence 57899999999999999999999999 999997653311 111111111 3333322 578777654
Q ss_pred Chh-----hHHHHHHHhhcCCcEEEEEcC
Q 016933 275 NID-----NMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 275 ~~~-----~~~~~~~~l~~~~G~~v~~g~ 298 (380)
-.+ .-...++.++++ ..+|.++-
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~aR 133 (188)
T d1sc6a1 106 ENPSTKNMMGAKEISLMKPG-SLLINASR 133 (188)
T ss_dssp SSTTTTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred CCcchhhhccHHHHhhCCCC-CEEEEcCc
Confidence 221 124677888886 66666644
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.46 E-value=0.24 Score=42.95 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 193 PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 193 ~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
..++.+|||+|+ |-+|...+..+...|. +|+++++...... ........+...+-.+ ... +.... .++|.|+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~-~~~~~~~~~~~~D~~~--~~~-~~~~~-~~~d~Vih 85 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHM-TEDMFCDEFHLVDLRV--MEN-CLKVT-EGVDHVFN 85 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSS-CGGGTCSEEEECCTTS--HHH-HHHHH-TTCSEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccch-hhhcccCcEEEeechh--HHH-HHHHh-hcCCeEee
Confidence 456788999997 9999999999988998 8988875433211 1112222222122222 222 23322 36899999
Q ss_pred cccC
Q 016933 272 CTGN 275 (380)
Q Consensus 272 ~~g~ 275 (380)
+++.
T Consensus 86 ~a~~ 89 (363)
T d2c5aa1 86 LAAD 89 (363)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8743
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.45 E-value=0.11 Score=42.58 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|+|+|+|..|+.|+..++..|.++|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999889974698887654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.36 E-value=0.21 Score=41.40 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=27.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+|||+|+ |-+|...+..++..|+ .|+++++++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~ 35 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD 35 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence 5899998 9999999999988898 899987653
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.28 E-value=0.19 Score=39.22 Aligned_cols=83 Identities=25% Similarity=0.375 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
.|++|.|+|.|.+|...+++++.+|+ +|++.+++... +..... ++ +.+.+ . ..|+|+-++.
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~-------~~~~~~--~~----l~ell----~-~sDiv~~~~p 101 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKE-------GPWRFT--NS----LEEAL----R-EARAAVCALP 101 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCC-------SSSCCB--SC----SHHHH----T-TCSEEEECCC
T ss_pred cCceEEEeccccccccceeeeecccc-ccccccccccc-------cceeee--ec----hhhhh----h-ccchhhcccc
Confidence 57899999999999999999999999 99999876431 111111 11 22222 1 4688877654
Q ss_pred Ch-hh----HHHHHHHhhcCCcEEEEEc
Q 016933 275 NI-DN----MISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 275 ~~-~~----~~~~~~~l~~~~G~~v~~g 297 (380)
-. ++ -...++.++++ ..++.++
T Consensus 102 l~~~t~~li~~~~l~~mk~~-ailIN~~ 128 (181)
T d1qp8a1 102 LNKHTRGLVKYQHLALMAED-AVFVNVG 128 (181)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred cccccccccccceeeecccc-ceEEecc
Confidence 21 11 14667777775 7776664
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.20 E-value=0.15 Score=43.69 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=29.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.++|+|+|||..|+.++..+...|. +|++++.++
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence 5789999999999999999888898 999997654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.17 E-value=0.24 Score=40.42 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHH-hCCCccE
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEM-TNGGVDR 268 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~-~~~~~d~ 268 (380)
.++++||=+|+| .|..+..+++ .|. +|++++.|++-++.+++ .|...-+...+ +..+ ..+.+|+
T Consensus 36 ~~~~~vLDiGCG-~G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d--------~~~~~~~~~fD~ 104 (246)
T d1y8ca_ 36 LVFDDYLDLACG-TGNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD--------ISNLNINRKFDL 104 (246)
T ss_dssp CCTTEEEEETCT-TSTTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC--------GGGCCCSCCEEE
T ss_pred CCCCeEEEEeCc-CCHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccc--------hhhhcccccccc
Confidence 345789988986 4677777776 477 89999999998877765 34322111111 1111 1347999
Q ss_pred EEEcccC------h----hhHHHHHHHhhcCCcEEEE
Q 016933 269 SVECTGN------I----DNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 269 v~d~~g~------~----~~~~~~~~~l~~~~G~~v~ 295 (380)
|+...+. . ..+..+.++|+|+ |.+++
T Consensus 105 i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~ 140 (246)
T d1y8ca_ 105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF 140 (246)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred cceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence 9864322 1 2567888888997 98874
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.10 E-value=0.49 Score=36.93 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=61.6
Q ss_pred hhhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc--e--EecCCCCCccHHHHH
Q 016933 187 TLNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT--D--FVNTSEHDRPIQEVI 258 (380)
Q Consensus 187 l~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~--~--vi~~~~~~~~~~~~~ 258 (380)
|.....+.++++||=+|+|. |..++.+|+ .+. +|++++.++...+.+++ .+.. . ++..+.. +
T Consensus 44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~-----~-- 113 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY-----E-- 113 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT-----T--
T ss_pred HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchh-----h--
Confidence 34556778899999888752 555666665 345 89999999998888865 2321 1 2211111 1
Q ss_pred HHHhCCCccEEEEcc----cC---hhhHHHHHHHhhcCCcEEEEE
Q 016933 259 AEMTNGGVDRSVECT----GN---IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 259 ~~~~~~~~d~v~d~~----g~---~~~~~~~~~~l~~~~G~~v~~ 296 (380)
...++.+|+|+-.. +. ...+..+.+.|+++ |+++++
T Consensus 114 -~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 156 (194)
T d1dusa_ 114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV 156 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred -hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence 11234799998621 21 13467788899997 987653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.08 E-value=0.14 Score=41.59 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
++++||+|+ +++|.+.+......|+ +|+.+++++++
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~ 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence 367899987 9999999988888999 89999887654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.03 E-value=0.12 Score=43.24 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|+|+|+|..|++++..++..|. +|+++++.+
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 58999999999999999999999 899998764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=90.02 E-value=0.17 Score=43.35 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHh--CCCcc
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMT--NGGVD 267 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~--~~~~d 267 (380)
.+|++||=.++|. |..++.+|+ |+.+|++++.+++.++++++ .|.+.+- .-..+ ..+.++.+. ++.||
T Consensus 144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~-~i~~d--~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVR-VLEAN--AFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEE-EEESC--HHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcc-eeecc--HHHHhhhhHhhhcCCC
Confidence 4688888776532 333445554 34499999999999988875 4554221 11111 333333322 23799
Q ss_pred EEEE-c--cc--C----------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 268 RSVE-C--TG--N----------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 268 ~v~d-~--~g--~----------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+|+- . .+ . .+++..+.+.|+|+ |.+++....
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence 9863 2 11 1 13566788899997 998877554
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=89.96 E-value=0.29 Score=40.64 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=64.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHHHhcCCceE-ecCCCCCccHHHHHHHHhCCCccEEE
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEAKKFGVTDF-VNTSEHDRPIQEVIAEMTNGGVDRSV 270 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~~~lG~~~v-i~~~~~~~~~~~~~~~~~~~~~d~v~ 270 (380)
..++.+||=+|+|. |..+..+++.. +. ++++++.++...+.+++...... +..+..+-. +..+.+|+|+
T Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~-------~~~~sfD~v~ 152 (268)
T d1p91a_ 82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP-------FSDTSMDAII 152 (268)
T ss_dssp CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-------BCTTCEEEEE
T ss_pred CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehhhcc-------CCCCCEEEEe
Confidence 45677888888753 66667777765 55 89999999999998887543322 111111100 1123699998
Q ss_pred EcccChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 271 ECTGNIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 271 d~~g~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
.... +..+.++.+.|+|+ |.+++...
T Consensus 153 ~~~~-~~~~~e~~rvLkpg-G~l~~~~p 178 (268)
T d1p91a_ 153 RIYA-PCKAEELARVVKPG-GWVITATP 178 (268)
T ss_dssp EESC-CCCHHHHHHHEEEE-EEEEEEEE
T ss_pred ecCC-HHHHHHHHHHhCCC-cEEEEEee
Confidence 6544 47789999999997 99887643
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.85 E-value=0.21 Score=38.10 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCc-EEEEEcCCh
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGVDRSS 230 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~~~~~ 230 (380)
.|++|+|+|+|.+|+.+++.++.++.+ +|+.++..+
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 478999999999999999988888743 788886554
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.5 Score=40.31 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=44.7
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh-cCCceEecCC-CCCccHHHHHHHHhCCCccEEEEccc
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK-FGVTDFVNTS-EHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~-lG~~~vi~~~-~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
+|||+|+ |-+|...++.+...|.-+|+++++...+...+.+ -.+. ++.-+ ..+..+.+.... ++|+|+.+++
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~-~i~~Di~~~~~~~~~~~~----~~d~Vih~a~ 76 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFH-FVEGDISIHSEWIEYHVK----KCDVVLPLVA 76 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEE-EEECCTTTCSHHHHHHHH----HCSEEEECBC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeE-EEECccCChHHHHHHHHh----CCCccccccc
Confidence 5999998 9999998887777774389999776554443332 2222 22222 111223332222 5899999887
Q ss_pred C
Q 016933 275 N 275 (380)
Q Consensus 275 ~ 275 (380)
.
T Consensus 77 ~ 77 (342)
T d2blla1 77 I 77 (342)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=89.80 E-value=0.26 Score=39.56 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHH---cCCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARI---AGASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~---~g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~~ 265 (380)
++++.+||=+|+| .|..+..+++. .++ +|++++.|++-++.+++ .+....+.....+ ........
T Consensus 37 ~~~~~~vLDlGCG-tG~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d------~~~~~~~~ 108 (225)
T d1im8a_ 37 VTADSNVYDLGCS-RGAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND------IRHVEIKN 108 (225)
T ss_dssp CCTTCEEEEESCT-TCHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC------TTTCCCCS
T ss_pred cCCCCEEEEeccc-hhhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch------hhcccccc
Confidence 6788999999875 36666667764 467 99999999998888875 2322211111111 00111225
Q ss_pred ccEEEEcccC--------hhhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSVECTGN--------IDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+|+++-...- ...+..+.+.|+|+ |.+++...
T Consensus 109 ~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~~ 148 (225)
T d1im8a_ 109 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSEK 148 (225)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeecccc
Confidence 6666543221 14688999999997 99987643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.34 Score=36.87 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=61.0
Q ss_pred hcchhhhhhhhhhhhccC-CCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCc
Q 016933 175 ILSCGVSTGLGATLNVAK-PERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDR 252 (380)
Q Consensus 175 ~l~~~~~ta~~~l~~~~~-~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~ 252 (380)
.+||.....+..| +.-+ --.|++|+|+|- ..+|.-.+.++...|+ +|+...+....
T Consensus 16 ~~PcTp~aI~~lL-~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~~-------------------- 73 (166)
T d1b0aa1 16 LRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTKN-------------------- 73 (166)
T ss_dssp SCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCSC--------------------
T ss_pred CCCchHHHHHHHH-HHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccch--------------------
Confidence 4555444444333 3333 346899999996 6799999999998999 88777432211
Q ss_pred cHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 253 PIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 253 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+.+.++ ..|+++-++|.+..+. -+.++++ ..++.+|..
T Consensus 74 -l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~ 111 (166)
T d1b0aa1 74 -LRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN 111 (166)
T ss_dssp -HHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred -hHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence 222232 3799999999876654 2356775 777777764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.53 E-value=0.35 Score=35.20 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=48.7
Q ss_pred hhccCCCCCCeEEEE-cCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 188 LNVAKPERGSSVAVF-GLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~-G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
++.++++.-+.+++. ..-..-.++.+++|.+|..++++...+++..+.++++|++.++++.
T Consensus 58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~ 119 (132)
T d1lssa_ 58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119 (132)
T ss_dssp HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence 566777776766664 3445667888899999998899998999999999999999998653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=89.51 E-value=0.14 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=28.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
-|+|+|+|+.|++|+..+...|. +|++++++++
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 38899999999999998988998 8999987653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.50 E-value=0.2 Score=42.46 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=33.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh--HHHHHHhcCC
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK--RFEEAKKFGV 241 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~--~~~~~~~lG~ 241 (380)
++|||+|+ |-+|...+..+...|+ +|+++++... ..+.++.++.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~ 47 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI 47 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence 47999998 9999999988888899 8999987442 3345555554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.63 Score=35.55 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred hhcchhhhhhhhhhhhccCC-CCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCC
Q 016933 174 CILSCGVSTGLGATLNVAKP-ERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHD 251 (380)
Q Consensus 174 a~l~~~~~ta~~~l~~~~~~-~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~ 251 (380)
+.+||.....+.. ++..++ -.|++++|+|. ..+|.-.+.++...|+ +|+...+.....
T Consensus 17 ~~~PcTp~aii~l-L~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l------------------ 76 (170)
T d1a4ia1 17 CFIPCTPKGCLEL-IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL------------------ 76 (170)
T ss_dssp CCCCHHHHHHHHH-HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH------------------
T ss_pred CCCCChHHHHHHH-HHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH------------------
Confidence 4456554444443 344443 47899999997 6899999999998999 888775432221
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.+ .. ...|+++-++|.+..+. -+.++++ -.++.+|..
T Consensus 77 ---~~----~~-~~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~ 113 (170)
T d1a4ia1 77 ---DE----EV-NKGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN 113 (170)
T ss_dssp ---HH----HH-TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred ---HH----HH-hhccchhhccccccccc--cccccCC-CeEeccCcc
Confidence 11 11 14789999998876644 3467775 777777764
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=89.29 E-value=2.7 Score=34.90 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=65.5
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE--cCChhHHHHHHhcCCceEecCCC-----------------
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGV--DRSSKRFEEAKKFGVTDFVNTSE----------------- 249 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~--~~~~~~~~~~~~lG~~~vi~~~~----------------- 249 (380)
+...++++..|+..++|..|.+++..|+.+|.+-++++ ..++.+.+.++.+|++.+.....
T Consensus 54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~ 133 (302)
T d1fcja_ 54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD 133 (302)
T ss_dssp HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence 44567777776666789999999999999998644444 34667888888888865421110
Q ss_pred ---------CC---------ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhc
Q 016933 250 ---------HD---------RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHD 288 (380)
Q Consensus 250 ---------~~---------~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~ 288 (380)
.+ ......+.+..++.+|+++-++|+..++.-....++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~ 190 (302)
T d1fcja_ 134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKG 190 (302)
T ss_dssp TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHT
T ss_pred ccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeee
Confidence 00 0122334444455789999999986766655555543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.29 E-value=0.19 Score=41.59 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCeEEEEcC-CHHHHHHH-HHHHH--cCCcEEEEEcCChhHHHHHH
Q 016933 195 RGSSVAVFGL-GAVGLAAA-EGARI--AGASRIIGVDRSSKRFEEAK 237 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai-~la~~--~g~~~vi~~~~~~~~~~~~~ 237 (380)
.|+.+||+|+ +++|.+.+ +||+. .|+ +|+.+++++++++.+.
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~ 50 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK 50 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence 4677888887 89999765 45663 588 9999999998876653
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=89.01 E-value=0.23 Score=41.89 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc--------eE-ecCCCCCccHHHHHHHHhCCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT--------DF-VNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~--------~v-i~~~~~~~~~~~~~~~~~~~~ 265 (380)
..++|||+|+|. |..+-.+++..+..+|.+++.+++-.+.++++-.. ++ +.. .| ..+.+++ ..+.
T Consensus 89 ~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~--~D--a~~~l~~-~~~~ 162 (295)
T d1inla_ 89 NPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI--AN--GAEYVRK-FKNE 162 (295)
T ss_dssp SCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SC--HHHHGGG-CSSC
T ss_pred CCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh--hh--HHHHHhc-CCCC
Confidence 347999998754 34456777777766899999999988888874321 11 111 12 3444443 3347
Q ss_pred ccEEE-Eccc----------ChhhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSV-ECTG----------NIDNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~-d~~g----------~~~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
+|+|+ |+.. +.+.+..+.++|+++ |.++.-..
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~ 205 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE 205 (295)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence 99975 4322 135678999999997 98886543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.96 E-value=0.98 Score=32.49 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCHH--------HHHHHH---HHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhC
Q 016933 195 RGSSVAVFGLGAV--------GLAAAE---GARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 195 ~g~~vlI~G~g~~--------G~~ai~---la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~ 263 (380)
.-++|||+|+|+. -++++| .+|..|+ +++.+.++++....-.++. |+++ ...- ..+.+.+...
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~a-D~lY-fePl---t~e~v~~Ii~ 79 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEMA-DATY-IEPI---HWEVVRKIIE 79 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGGS-SEEE-CSCC---CHHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhhc-ceee-eecC---CHHHHHHHHH
Confidence 3478999998732 344444 4456699 8999989888765443332 3332 1111 1222333222
Q ss_pred -CCccEEEEcccChhhHHHHHHHhhc
Q 016933 264 -GGVDRSVECTGNIDNMISAFECVHD 288 (380)
Q Consensus 264 -~~~d~v~d~~g~~~~~~~~~~~l~~ 288 (380)
+.+|.|+-..|+...++.+.++...
T Consensus 80 ~E~pd~il~~~GGQtalnla~~L~~~ 105 (127)
T d1a9xa3 80 KERPDAVLPTMGGQTALNCALELERQ 105 (127)
T ss_dssp HHCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred HhCcCCeEEEeeeehHhHHHHHHHHc
Confidence 3789999999996666666665544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=88.91 E-value=0.34 Score=41.26 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCc---eEec-----CCCCCccHHHHHHHHhCCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVT---DFVN-----TSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~---~vi~-----~~~~~~~~~~~~~~~~~~~ 265 (380)
...++|||+|+|. |..+..+++.....+|.+++.+++-.+++++.-.. .+++ ..-.| ..+.+++ +++.
T Consensus 76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~D--a~~~l~~-~~~~ 151 (312)
T d1uira_ 76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD--ARAYLER-TEER 151 (312)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC--HHHHHHH-CCCC
T ss_pred CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEch--HHHHhhh-cCCc
Confidence 3457899998754 55566677766655999999999988888774210 0000 00112 5555554 3448
Q ss_pred ccEEE-Ec---cc---------ChhhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSV-EC---TG---------NIDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~-d~---~g---------~~~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+|+ |. .+ +.+.+..+.++|+++ |.++.-
T Consensus 152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~ 194 (312)
T d1uira_ 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ 194 (312)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence 99985 44 22 124578899999997 988754
|
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.86 E-value=2.3 Score=35.85 Aligned_cols=108 Identities=20% Similarity=0.121 Sum_probs=68.0
Q ss_pred hccCCCCCCeEEEE-cCCHHHHHHHHHHHHcCCcEEEEE--cCChhHHHHHHhcCCceEecCCC----------------
Q 016933 189 NVAKPERGSSVAVF-GLGAVGLAAAEGARIAGASRIIGV--DRSSKRFEEAKKFGVTDFVNTSE---------------- 249 (380)
Q Consensus 189 ~~~~~~~g~~vlI~-G~g~~G~~ai~la~~~g~~~vi~~--~~~~~~~~~~~~lG~~~vi~~~~---------------- 249 (380)
+...++++...+|. .+|..|.+.+..|+.+|.+-++++ ..++.|.+.++.+|++.++....
T Consensus 57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~ 136 (320)
T d1z7wa1 57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAK 136 (320)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHh
Confidence 44556666555555 569999999999999999544444 34668899999999975432111
Q ss_pred -----------CCc-------cHHHHHHHHhCCCccEEEEcccChhhHH---HHHHHhhcCCcEEEEEc
Q 016933 250 -----------HDR-------PIQEVIAEMTNGGVDRSVECTGNIDNMI---SAFECVHDGWGVAVLVG 297 (380)
Q Consensus 250 -----------~~~-------~~~~~~~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g 297 (380)
++. .....+.+...+.+|.++-++|+..++. ..++...+. -+++-+.
T Consensus 137 ~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igve 204 (320)
T d1z7wa1 137 TPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGVE 204 (320)
T ss_dssp CTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred CCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeeccc
Confidence 000 1222333344457899999998866654 344455554 5665553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.76 E-value=0.34 Score=38.32 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=35.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+|.|+|.|-+|+..+......|. +|++++.++++.+.+++
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~ 41 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ 41 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence 58899999999987777777898 99999999999988876
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.72 E-value=0.96 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=31.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 195 RGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 195 ~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
+.++|||+|+ |.+|...+..+...|+ +|+++.|+..+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~ 39 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKG 39 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcch
Confidence 4578999997 9999999998888999 88888786543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=88.67 E-value=0.41 Score=36.07 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHH
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRF 233 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~ 233 (380)
.++..+|.|+|+|.+|...+.++...+...++.++.++++.
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~ 44 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP 44 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence 35668899999999999888888877866899998877553
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.59 E-value=0.18 Score=41.03 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=27.2
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
|+|+|+|..|++++..+...|. +|+.+++++
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~ 35 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN 35 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 7889999999998888888899 899998754
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.58 E-value=0.41 Score=35.98 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.-+++|+|+|+|.+|.=++..+..+|++.|+.+.+.
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence 446789999999999999999999999778777553
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.32 E-value=0.21 Score=40.20 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=27.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
|+|+|+|..|+.++..+...|. +|+++++++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence 7888999999999888888998 899998764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=88.31 E-value=0.44 Score=39.57 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=27.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc-CChhHHHHH
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVD-RSSKRFEEA 236 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~-~~~~~~~~~ 236 (380)
.+||+|+ +++|.+.++.....|+ +|+... +++++.+.+
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~ 43 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 43 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHH
Confidence 4577787 8999999988888999 676654 455544433
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.27 E-value=0.24 Score=40.66 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=28.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
+.|||+|+ +++|.+.+......|+ +|+.++++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence 46789987 9999998888888999 8988887643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.21 E-value=0.81 Score=35.87 Aligned_cols=49 Identities=29% Similarity=0.357 Sum_probs=35.2
Q ss_pred hhccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhc
Q 016933 188 LNVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKF 239 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~l 239 (380)
....++ .|++||=.|+|. |.+++. |...|+.+|++++.+++..+.+++.
T Consensus 42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N 90 (197)
T d1ne2a_ 42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRN 90 (197)
T ss_dssp HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHH
T ss_pred HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHc
Confidence 334555 589999888753 444544 3446777899999999999988874
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.09 E-value=0.33 Score=34.84 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+.+++++|+|+|.+|+-+++.+..+|. +|..+.+++
T Consensus 30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence 345789999999999999999999999 888886653
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=0.12 Score=40.48 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
+++..|+|+|+|+.|+.|+..+..+|. +|+.+.+..
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~ 38 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME 38 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence 345679999999999999999999999 788886543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.87 E-value=2.2 Score=31.29 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=44.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCC-cEEEEEcCChhHHHHHHhcCCceEecCC--CCCccHHHHHHHHhCCCccEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGA-SRIIGVDRSSKRFEEAKKFGVTDFVNTS--EHDRPIQEVIAEMTNGGVDRSVEC 272 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~-~~vi~~~~~~~~~~~~~~lG~~~vi~~~--~~~~~~~~~~~~~~~~~~d~v~d~ 272 (380)
.+|.|+|| |.+|...+.++...+. +.++.++.++.+-+.+.-..+....... -...+..+.+ .+.|+|+-+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~aDivVit 75 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCL-----KGCDVVVIP 75 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHH-----TTCSEEEEC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHh-----CCCCEEEEC
Confidence 36899997 9999999988887774 6889998876554333222121111000 0011133322 258999999
Q ss_pred ccC
Q 016933 273 TGN 275 (380)
Q Consensus 273 ~g~ 275 (380)
.|.
T Consensus 76 ag~ 78 (144)
T d1mlda1 76 AGV 78 (144)
T ss_dssp CSC
T ss_pred CCc
Confidence 885
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=87.82 E-value=1.2 Score=35.42 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=57.9
Q ss_pred eEEEEcCCHHHHH-HHHHHHHc-CCcEEE-EEcCChhHHH-HHHhcCCc--eEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 198 SVAVFGLGAVGLA-AAEGARIA-GASRII-GVDRSSKRFE-EAKKFGVT--DFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 198 ~vlI~G~g~~G~~-ai~la~~~-g~~~vi-~~~~~~~~~~-~~~~lG~~--~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
+|.|+|+|.+|.- .+...+.. +. +++ ++++++++.+ ..+++|.+ .+..+++ +.+.+ ....+|+|+-
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d----~~ell---~~~~iD~V~I 106 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN----FDKIA---KDPKIDAVYI 106 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS----GGGGG---GCTTCCEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc----hhhhc---ccccceeeee
Confidence 6788999988863 33433333 66 555 5566776654 44557753 2333333 21111 1237999999
Q ss_pred cccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 272 CTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 272 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
++....+...+.+++.. |+-+++..+
T Consensus 107 ~tp~~~H~~~~~~al~~--gk~v~~EKP 132 (221)
T d1h6da1 107 ILPNSLHAEFAIRAFKA--GKHVMCEKP 132 (221)
T ss_dssp CSCGGGHHHHHHHHHHT--TCEEEECSS
T ss_pred ccchhhhhhHHHHhhhc--chhhhcCCC
Confidence 99887788888888887 566667554
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.80 E-value=0.23 Score=39.55 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=26.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|+.|+.++..+..+|. +|++++..
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~ 35 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence 6788999999999999999999 88888764
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.22 Score=38.39 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=26.0
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
|+|+|+|+.|+.|+..|...|. +|+.+++
T Consensus 4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~ 32 (184)
T d1fl2a1 4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE 32 (184)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence 7889999999999999999999 7888864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=87.55 E-value=2.9 Score=31.55 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCCCCeEEEEcC--CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eEecCCCCCccHHHHHHHHhCC
Q 016933 192 KPERGSSVAVFGL--GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 192 ~~~~g~~vlI~G~--g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.+.+|.+||=.++ |.+|+ ..+ ..|+ +++.++.+++..+.+++ +|.. .+...+.. .+.... .....
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i---~a~-~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d--~~~~~~-~~~~~ 109 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGL---EAA-SEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE--VFLPEA-KAQGE 109 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHH---HHH-HTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH--HHHHHH-HHTTC
T ss_pred cccCCCeEEEeccccchhhh---hhh-hccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehh--cccccc-cccCC
Confidence 4677888876653 55554 323 3588 78899999999888764 5553 33322211 122221 22334
Q ss_pred CccEEE-Ec---ccChhhHHHHHH--HhhcCCcEEEE
Q 016933 265 GVDRSV-EC---TGNIDNMISAFE--CVHDGWGVAVL 295 (380)
Q Consensus 265 ~~d~v~-d~---~g~~~~~~~~~~--~l~~~~G~~v~ 295 (380)
.||+|| |. .+-.+.+..+++ .++++ |.+++
T Consensus 110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi 145 (171)
T d1ws6a1 110 RFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL 145 (171)
T ss_dssp CEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred ccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence 799996 32 232244444443 36775 76654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=87.54 E-value=3.5 Score=30.12 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCChhHH
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSSKRF 233 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~~~~ 233 (380)
.+|.|+|+|.+|..++..+...+. ++++.++.++++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~ 39 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV 39 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 468889999999998888877764 5899999888664
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.49 E-value=0.62 Score=38.77 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-c---------------eEecCCCCCccHHHH
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-T---------------DFVNTSEHDRPIQEV 257 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~---------------~vi~~~~~~~~~~~~ 257 (380)
.+.++|||+|+|. |..+-.+++. ...+|.+++.+++=.++++++-. . .++. .| ..+.
T Consensus 71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~---~D--a~~~ 143 (276)
T d1mjfa_ 71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI---GD--GFEF 143 (276)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE---SC--HHHH
T ss_pred CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE---Ch--HHHH
Confidence 4457899998753 2333444554 44589999999999998887321 1 1111 12 3444
Q ss_pred HHHHhCCCccEEE-EcccC---------hhhHHHHHHHhhcCCcEEEEEc
Q 016933 258 IAEMTNGGVDRSV-ECTGN---------IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 258 ~~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g 297 (380)
+++ .+.+|+|+ |.... .+.+..+-++|+++ |.++.-.
T Consensus 144 l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~ 190 (276)
T d1mjfa_ 144 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA 190 (276)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred Hhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence 543 35899975 44432 25688899999997 9887644
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=87.48 E-value=0.19 Score=43.84 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=25.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 198 SVAVFGL-GAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 198 ~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
+|||+|+ |-+|...+..+...|...|++++.
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 6999997 999999888888889866777764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=87.38 E-value=0.46 Score=38.71 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
-.|.+|+|.|.|.+|..+++++...|+ +|++++.
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD 62 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence 478999999999999999999999999 8888754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=87.09 E-value=0.19 Score=41.85 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=27.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
+|+|+|+|..|+.++..+...|. +|++++.+
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 32 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS 32 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence 48999999999999999998999 89999764
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.84 E-value=0.48 Score=37.05 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=32.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK 238 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~ 238 (380)
+|.|+|.|-+|+..+.++ +.|. +|++++.++++.+.+++
T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~ 40 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN 40 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence 588899999999876555 4698 99999999999988875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.71 E-value=1 Score=39.11 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=63.8
Q ss_pred EcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCceE--------------ecCCCCCccHHHHHHHHhC
Q 016933 202 FGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVTDF--------------VNTSEHDRPIQEVIAEMTN 263 (380)
Q Consensus 202 ~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~~v--------------i~~~~~~~~~~~~~~~~~~ 263 (380)
-+-+++|.-++.+|+..|+..|++.+.+++..+++++ .+.... +.....| ....+.+ .+
T Consensus 51 D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D--a~~~~~~-~~ 127 (375)
T d2dula1 51 DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD--ANRLMAE-RH 127 (375)
T ss_dssp ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC--HHHHHHH-ST
T ss_pred EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh--hhhhhHh-hc
Confidence 3557789999999999998899999999999999875 121110 1111112 3333322 23
Q ss_pred CCccEE-EEcccCh-hhHHHHHHHhhcCCcEEEEEcC
Q 016933 264 GGVDRS-VECTGNI-DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 264 ~~~d~v-~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
..||+| +|..|++ +.+..++++++.+ |.+.+..+
T Consensus 128 ~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTaT 163 (375)
T d2dula1 128 RYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTAT 163 (375)
T ss_dssp TCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEec
Confidence 379976 9999984 5688999999996 87776644
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.63 E-value=2.4 Score=30.19 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=59.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccChh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNID 277 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~ 277 (380)
.++|.|.|.+|...+..++ +. .|++++.++++.+.++..|...+. -+..+ .+.+++..-..++.++-+.....
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~-Gd~~~---~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVH-GDPTR---VSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEE-SCTTS---HHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccc-cccCC---HHHHHHhhhhcCcEEEEeccchh
Confidence 5788999999987776654 44 677788999999999888875443 33322 23455543347888888877643
Q ss_pred h---HHHHHHHhhcCCcEEEEE
Q 016933 278 N---MISAFECVHDGWGVAVLV 296 (380)
Q Consensus 278 ~---~~~~~~~l~~~~G~~v~~ 296 (380)
. .....+.+.|. .+++..
T Consensus 75 ~n~~~~~~~r~~~~~-~~iia~ 95 (129)
T d2fy8a1 75 ETIHCILGIRKIDES-VRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHCSS-SCEEEE
T ss_pred hhHHHHHHHHHHCCC-ceEEEE
Confidence 2 33455566665 555544
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=1.4 Score=31.32 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=48.4
Q ss_pred CCeEEEEcCCHH--------HHHHH---HHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhC-
Q 016933 196 GSSVAVFGLGAV--------GLAAA---EGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTN- 263 (380)
Q Consensus 196 g~~vlI~G~g~~--------G~~ai---~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~- 263 (380)
.++|||+|+|+. -++++ ..+|..|+ +++.+.++++....-.++ +|+++ ...- ..+.+.+...
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lY-fepl---t~e~v~~Ii~~ 77 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLY-FEPV---TLEDVLEIVRI 77 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEE-CCCC---SHHHHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceE-EccC---CHHHHHHHHHH
Confidence 468999998732 24444 44456699 899998888765432222 23332 1111 1222333222
Q ss_pred CCccEEEEcccChhhHHHHHHHhhc
Q 016933 264 GGVDRSVECTGNIDNMISAFECVHD 288 (380)
Q Consensus 264 ~~~d~v~d~~g~~~~~~~~~~~l~~ 288 (380)
+.+|.|+-..|+...++.+.+ |.+
T Consensus 78 E~p~~ii~~~GGQtalnla~~-L~~ 101 (121)
T d1a9xa4 78 EKPKGVIVQYGGQTPLKLARA-LEA 101 (121)
T ss_dssp HCCSEEECSSSTHHHHTTHHH-HHH
T ss_pred hCCCEEEeehhhhhHHHHHHH-HHH
Confidence 267888888888555554444 444
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=1.7 Score=36.88 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCCCc-------------------
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEHDR------------------- 252 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~~~------------------- 252 (380)
.+...|+...+|..|.+.+..++.+|.+-++++. .+.+|.+.++.+|++.++.....+.
T Consensus 73 ~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (331)
T d1tdja1 73 QKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPP 152 (331)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCS
T ss_pred CCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccc
Confidence 3445566666799999999999999995444443 3567889999999975542221100
Q ss_pred -----------cHHHHHHHHhCCCccEEEEcccChhhHH---HHHHHhhcCCcEEEEEcC
Q 016933 253 -----------PIQEVIAEMTNGGVDRSVECTGNIDNMI---SAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 253 -----------~~~~~~~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g~ 298 (380)
.....+.+. .+.+|.+|-++|+..++. ..++.+.+. -+++.+..
T Consensus 153 ~~~~~~~~g~~t~~~Ei~~q-~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve~ 210 (331)
T d1tdja1 153 FDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVEA 210 (331)
T ss_dssp SCCHHHHHHHHHHHHHHHHH-CTTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred cCChHHhhhhhhHHHHHHHh-cCCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEecc
Confidence 011112222 236899999998866554 444445564 67776643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=86.14 E-value=3.9 Score=31.88 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=60.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHc-CCcEEEEEcCChhHHHHH----HhcCCceEecCCCCCccHHHHHHHHhCCCccEEEE
Q 016933 197 SSVAVFGLGAVGLAAAEGARIA-GASRIIGVDRSSKRFEEA----KKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVE 271 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~-g~~~vi~~~~~~~~~~~~----~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d 271 (380)
..||=+|+| .|..++.+|+.. +. .+++++.+......+ ++.|.+.+--...+-..+ ...+..+.+|.|+-
T Consensus 31 PlvLeIGcG-~G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l---~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 31 PIHIEVGTG-KGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL---TDVFEPGEVKRVYL 105 (204)
T ss_dssp CEEEEECCT-TSHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH---HHHCCTTSCCEEEE
T ss_pred ceEEEEEec-CcHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh---hcccCchhhhcccc
Confidence 344556776 478888899876 45 999999999877665 346665442112211112 22233347888765
Q ss_pred cccC--------------hhhHHHHHHHhhcCCcEEEEE
Q 016933 272 CTGN--------------IDNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 272 ~~g~--------------~~~~~~~~~~l~~~~G~~v~~ 296 (380)
.... ++.+..+.+.|+|+ |.+.+.
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~ 143 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFK 143 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEE
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEE
Confidence 4433 25788999999997 998775
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=0.51 Score=37.68 Aligned_cols=100 Identities=13% Similarity=-0.019 Sum_probs=62.6
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC----ceEecCCCCCccHHHHHHHHhCCCc
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV----TDFVNTSEHDRPIQEVIAEMTNGGV 266 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~----~~vi~~~~~~~~~~~~~~~~~~~~~ 266 (380)
....++.+||=+|+| .|..+..+++..+. +|++++.+++-++.+++... ..+ .+...+ +.+ + ....+.+
T Consensus 56 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~~d--~~~-~-~~~~~~f 128 (222)
T d2ex4a1 56 PNKTGTSCALDCGAG-IGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCCG--LQD-F-TPEPDSY 128 (222)
T ss_dssp --CCCCSEEEEETCT-TTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEE-EEEECC--GGG-C-CCCSSCE
T ss_pred cCCCCCCEEEEeccC-CCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccc-cccccc--ccc-c-ccccccc
Confidence 345677888888876 36677777766665 89999999999888876432 111 111111 100 0 0112378
Q ss_pred cEEEEccc-----Ch---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 267 DRSVECTG-----NI---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 267 d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
|+|+.... .+ ..+..+.+.|+++ |.+++...
T Consensus 129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~ 167 (222)
T d2ex4a1 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN 167 (222)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence 99886422 22 3677889999997 99887643
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.28 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=26.9
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|..|+.|+..|..+|. +|+.+...
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 6888999999999999999999 88888764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.91 E-value=0.33 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=27.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.++|+|+|+.|+.++..|..+|. +|+.+...
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 37888999999999999999999 89988754
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.64 E-value=0.37 Score=38.24 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=26.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
++|+|+|+.|+.|+..|..+|. +|+++.+.
T Consensus 6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~ 35 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG 35 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence 6788999999999999999999 88888654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.60 E-value=0.46 Score=39.79 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.2
Q ss_pred CCCeEEEEcC-C--HHHHHHHHHHHHcCCcEEEEEcCChh
Q 016933 195 RGSSVAVFGL-G--AVGLAAAEGARIAGASRIIGVDRSSK 231 (380)
Q Consensus 195 ~g~~vlI~G~-g--~~G~~ai~la~~~g~~~vi~~~~~~~ 231 (380)
+|+++||+|+ | ++|.+.++.+...|+ +|+...+++.
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~ 45 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA 45 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence 6789999997 4 799999999999999 8887766554
|
| >d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: GroES domain: Chaperonin-10 (GroES) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.57 E-value=0.78 Score=31.51 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=18.9
Q ss_pred ccEEEEEeCCCCC----------CCCCCCEEEec
Q 016933 72 AAGVVESVGEGVS----------DLEVGDHVLPV 95 (380)
Q Consensus 72 ~vG~V~~vG~~v~----------~~~~GdrV~~~ 95 (380)
..|+|+++|++.. .+++||+|+..
T Consensus 38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~ 71 (99)
T d1p3ha_ 38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS 71 (99)
T ss_dssp EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred eEEEEEEECCceEcCCCCEecCCeeecCCEEEEc
Confidence 3599999999742 47899999854
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=85.34 E-value=1.3 Score=36.02 Aligned_cols=101 Identities=12% Similarity=-0.052 Sum_probs=64.6
Q ss_pred hccCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCC-ceEecCCCCCccHHHHHHHH--hCCC
Q 016933 189 NVAKPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGV-TDFVNTSEHDRPIQEVIAEM--TNGG 265 (380)
Q Consensus 189 ~~~~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~-~~vi~~~~~~~~~~~~~~~~--~~~~ 265 (380)
+.....++.+||=+|+| .|..+..++..... .|++++.+++-++.+++.-. ...+.+...+ +.++ ..+.
T Consensus 87 ~~l~~~~~~~vLD~GcG-~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d------~~~~~~~~~~ 158 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAG-IGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILAS------METATLPPNT 158 (254)
T ss_dssp HTSTTCCCSEEEEETCT-TTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESC------GGGCCCCSSC
T ss_pred hhCCCCCCCeEEEeccc-CChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEcc------ccccccCCCc
Confidence 34445667788878876 37788888876665 89999999999988886322 1222221111 1111 1237
Q ss_pred ccEEEEcccC-----h---hhHHHHHHHhhcCCcEEEEEcC
Q 016933 266 VDRSVECTGN-----I---DNMISAFECVHDGWGVAVLVGV 298 (380)
Q Consensus 266 ~d~v~d~~g~-----~---~~~~~~~~~l~~~~G~~v~~g~ 298 (380)
||+|+..-.- + ..+..+.+.|+++ |.+++...
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e~ 198 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKEN 198 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEec
Confidence 9998764321 1 3477888999997 99887543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.20 E-value=0.36 Score=40.79 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|+|+|||..|++++..++..|. .+++++..+
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~ 40 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG 40 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence 48899999999999999999999 788887654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=85.11 E-value=0.39 Score=39.53 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=26.8
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
|+|+|+|.+|+.++..+...|. +|+++++.+
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENK-NTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 8899999999998888877898 899998753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.91 E-value=0.3 Score=41.21 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=27.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
.|+|+|||..|+.++..+...|. +|.+++.++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence 47899999999999999888898 899997654
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=84.81 E-value=1.5 Score=32.95 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=55.1
Q ss_pred eEEEEcCCHHHHH-HHHHHHHc-CCcEEEEE-cCChhHH-HHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcc
Q 016933 198 SVAVFGLGAVGLA-AAEGARIA-GASRIIGV-DRSSKRF-EEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECT 273 (380)
Q Consensus 198 ~vlI~G~g~~G~~-ai~la~~~-g~~~vi~~-~~~~~~~-~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 273 (380)
+|.|+|.|.+|.- .+...+.. ++ +++++ ++++++. ++.+++++.. ++. +.+ + . ..+|+|+-++
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~---~~~----~~~-l---~-~~~D~V~I~t 69 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY---ADS----LSS-L---A-ASCDAVFVHS 69 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB---CSS----HHH-H---H-TTCSEEEECS
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc---ccc----chh-h---h-hhcccccccc
Confidence 5789999988863 55555544 66 55544 5555544 4456677642 111 222 2 1 2589999999
Q ss_pred cChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 274 GNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 274 g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
....+...+..++.. |+-+++..+
T Consensus 70 p~~~h~~~~~~al~~--gk~V~~EKP 93 (164)
T d1tlta1 70 STASHFDVVSTLLNA--GVHVCVDKP 93 (164)
T ss_dssp CTTHHHHHHHHHHHT--TCEEEEESS
T ss_pred cchhccccccccccc--cceeecccc
Confidence 887778888888877 455666554
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.74 E-value=0.4 Score=38.30 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.1
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|+.|+.|+..|..+|. +|+.++..
T Consensus 8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~ 37 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKR 37 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence 6788999999999888888999 88888754
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.67 E-value=0.9 Score=33.86 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR 232 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~ 232 (380)
|..+|.|+|+|.+|...+.++...+...++.++.++++
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~ 39 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM 39 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence 45689999999999988888888888899999887755
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=84.62 E-value=2.4 Score=35.78 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=61.3
Q ss_pred cCCCCCCeEEEEcC--CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCC--ce--EecCCCCCccHHHHHHH
Q 016933 191 AKPERGSSVAVFGL--GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGV--TD--FVNTSEHDRPIQEVIAE 260 (380)
Q Consensus 191 ~~~~~g~~vlI~G~--g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~--~~--vi~~~~~~~~~~~~~~~ 260 (380)
..+.+|++||=..+ |+.++. +| ..|++.|+.++.++...+++++ .|. +. ++. .| ..+.++.
T Consensus 140 ~~~~~g~~VLdlf~~~G~~sl~---aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~---~d--~~~~l~~ 210 (317)
T d2b78a2 140 NGSAAGKTVLNLFSYTAAFSVA---AA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV---MD--VFDYFKY 210 (317)
T ss_dssp HTTTBTCEEEEETCTTTHHHHH---HH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE---SC--HHHHHHH
T ss_pred HHhhCCCceeecCCCCcHHHHH---HH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE---cc--HHHHHHH
Confidence 45678999987743 655543 22 3688789999999998888875 222 11 222 12 4444444
Q ss_pred Hh--CCCccEEE-Ecc--cC------------hhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 261 MT--NGGVDRSV-ECT--GN------------IDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 261 ~~--~~~~d~v~-d~~--g~------------~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
.. ++.||+|+ |.- +. .+++..++++++|+ |.++.....
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs 265 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNA 265 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence 32 23799986 321 10 13566788999997 988876543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=84.48 E-value=0.93 Score=36.84 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHh----cCCc-eE--ecCCCCCccHHHHHHHHhCCC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKK----FGVT-DF--VNTSEHDRPIQEVIAEMTNGG 265 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~----lG~~-~v--i~~~~~~~~~~~~~~~~~~~~ 265 (380)
++++++||=+|+|. |..+..+++. |...|++++.|++.++.+++ .+.. .+ +..+.....+ ..++.
T Consensus 22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~------~~~~~ 93 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM------DLGKE 93 (252)
T ss_dssp CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC------CCSSC
T ss_pred CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc------ccccc
Confidence 57899999998764 5556677665 54489999999998888864 3322 11 1111100000 01237
Q ss_pred ccEEEEcccC------h----hhHHHHHHHhhcCCcEEEEE
Q 016933 266 VDRSVECTGN------I----DNMISAFECVHDGWGVAVLV 296 (380)
Q Consensus 266 ~d~v~d~~g~------~----~~~~~~~~~l~~~~G~~v~~ 296 (380)
+|+|+....- . ..+..+.+.|+|+ |.++..
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~ 133 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT 133 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence 9998764321 1 2456677889997 988754
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.47 E-value=1.9 Score=37.48 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=42.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecC
Q 016933 192 KPERGSSVAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNT 247 (380)
Q Consensus 192 ~~~~g~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~ 247 (380)
+++++.+|+-..+|..|.+.+..|+.+|.+-++++. .++.|.+.++.+|++.+...
T Consensus 140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~ 197 (382)
T d1wkva1 140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDP 197 (382)
T ss_dssp TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEET
T ss_pred ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecC
Confidence 467777655456799999999999999995444443 36688999999999766543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.32 E-value=0.43 Score=40.10 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=26.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|..|+.++.-|...|+ +|++++..
T Consensus 19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~ 48 (308)
T d1y0pa2 19 VVVVGSGGAGFSAAISATDSGA-KVILIEKE 48 (308)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 7899999999999999989999 89988754
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.27 E-value=0.46 Score=38.04 Aligned_cols=31 Identities=35% Similarity=0.396 Sum_probs=27.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
|+|+|+|+.|+.|+..|..+|. +|++++..+
T Consensus 9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~ 39 (229)
T d1ojta1 9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK 39 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 6788999999999999999999 888887543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.26 E-value=0.37 Score=41.02 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.1
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 7889999999999999999999 899997543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=84.20 E-value=0.36 Score=36.95 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=50.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHc-CCcEEEEE-cCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEcccC
Q 016933 198 SVAVFGLGAVGLAAAEGARIA-GASRIIGV-DRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGN 275 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~-g~~~vi~~-~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~ 275 (380)
+|.|+|.|.+|...+...+.. ++ +++++ ++++++. ... .+..+.+.. .. ...+|+|+.|++.
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~---~~~---~~~~~~~~~--------~~-~~~~D~Vvi~tp~ 68 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLD---TKT---PVFDVADVD--------KH-ADDVDVLFLCMGS 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCS---SSS---CEEEGGGGG--------GT-TTTCSEEEECSCT
T ss_pred eEEEECChHHHHHHHHHHHhCCCc-EEEEEEecccccc---ccc---ccccchhhh--------hh-ccccceEEEeCCC
Confidence 578999999998877777654 56 55544 4443321 111 122111111 11 1368999999998
Q ss_pred hhhHHHHHHHhhcCCcEEEE
Q 016933 276 IDNMISAFECVHDGWGVAVL 295 (380)
Q Consensus 276 ~~~~~~~~~~l~~~~G~~v~ 295 (380)
..+.+.+.++|..+ -.++.
T Consensus 69 ~~h~~~a~~aL~aG-~~vv~ 87 (170)
T d1f06a1 69 ATDIPEQAPKFAQF-ACTVD 87 (170)
T ss_dssp TTHHHHHHHHHTTT-SEEEC
T ss_pred cccHHHHHHHHHCC-CcEEE
Confidence 77888999999995 66553
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=1.2 Score=37.82 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=26.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVD 227 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~ 227 (380)
++|||+|+ |-+|...+..+...|. +|++++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld 33 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID 33 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence 68999997 9999999888888898 888885
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=83.93 E-value=0.48 Score=37.57 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|+.|+.|+..|...|. +|++++..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 6778999999999999999999 88888753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=83.69 E-value=1.1 Score=37.17 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=64.1
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHHh----cCCceEecCCCCCccHHHHHHHHhCC
Q 016933 191 AKPERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAKK----FGVTDFVNTSEHDRPIQEVIAEMTNG 264 (380)
Q Consensus 191 ~~~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~~----lG~~~vi~~~~~~~~~~~~~~~~~~~ 264 (380)
.++.++.+||=+|+| .|..+..+++.. +. +|++++.++...+.+++ .+.+.-+...+.. .+ -.++
T Consensus 23 ~~~~~~~~ILDiGcG-~G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~------~~~~ 93 (281)
T d2gh1a1 23 WKITKPVHIVDYGCG-YGYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EI------ELND 93 (281)
T ss_dssp SCCCSCCEEEEETCT-TTHHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TC------CCSS
T ss_pred hccCCcCEEEEecCc-CCHHHHHHHHhCCCCC-EEEEEecchhHhhhhhcccccccccccccccccc-cc------cccC
Confidence 356777889888886 488888888876 45 89999999988887765 3432211111110 00 0123
Q ss_pred CccEEEEccc-----C-hhhHHHHHHHhhcCCcEEEEEc
Q 016933 265 GVDRSVECTG-----N-IDNMISAFECVHDGWGVAVLVG 297 (380)
Q Consensus 265 ~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 297 (380)
.+|+|+.... . ...+..+.+.|+|+ |.+++..
T Consensus 94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 131 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE 131 (281)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred CceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence 7999886532 2 24578899999997 9988764
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=83.60 E-value=3.2 Score=34.36 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=60.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCCC------------------------c
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEHD------------------------R 252 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~~------------------------~ 252 (380)
|+..++|..|.+++..|+.+|.+-++.+. .++.|.+.++.+|++.++...+.+ .
T Consensus 58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (293)
T d1o58a_ 58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFEN 137 (293)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCTTTC
T ss_pred eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhccCCEEeeeccc
Confidence 43346799999999999999986555553 367789999999997544221110 0
Q ss_pred ---------cHHHHHHHHhCCCccEEEEcccChhhHHHHHHH---hhcCCcEEEEEc
Q 016933 253 ---------PIQEVIAEMTNGGVDRSVECTGNIDNMISAFEC---VHDGWGVAVLVG 297 (380)
Q Consensus 253 ---------~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~---l~~~~G~~v~~g 297 (380)
.....+.+..++.+|++|-++|+..++.-+... +.+..-+++.+.
T Consensus 138 ~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~ve 194 (293)
T d1o58a_ 138 PYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVE 194 (293)
T ss_dssp HHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred cceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEe
Confidence 011122233344689999998876665544433 333214666664
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.44 E-value=0.49 Score=36.77 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
..|+|+|+|+.|+.|+..|..+|. ++++++.
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~ 36 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG 36 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence 568999999999999988888999 7777754
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.29 E-value=0.42 Score=36.62 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCc-EEEEE
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGAS-RIIGV 226 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~-~vi~~ 226 (380)
++++|+|+|+|.+|.-++..++.+|.+ +|+.+
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~ 34 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV 34 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence 468999999999999999999999974 34444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=83.19 E-value=6.5 Score=28.48 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=26.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhH
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKR 232 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~ 232 (380)
.+|.|+|+|.+|...+..+...+ +.+++.++.++++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~ 38 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK 38 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence 36888999999999888777776 3479999887765
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.18 E-value=0.54 Score=37.19 Aligned_cols=30 Identities=40% Similarity=0.412 Sum_probs=26.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
++|+|+|+.|+.|+..|..+|. +|++++..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGA-RAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 6788999999999999999999 88888653
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.93 E-value=2.4 Score=32.01 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=58.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC--hhHHHHHHhc----CC---c-------------eEecCCCCCccHH
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS--SKRFEEAKKF----GV---T-------------DFVNTSEHDRPIQ 255 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~--~~~~~~~~~l----G~---~-------------~vi~~~~~~~~~~ 255 (380)
+|.|.|-|-+|.+..+++...+. +++++... .+....+.++ |. + .+.-+++.+ .
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~--p- 77 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD--P- 77 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS--G-
T ss_pred EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC--h-
Confidence 57899999999999988877788 77777432 2344444332 11 0 000011111 0
Q ss_pred HHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 256 EVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 256 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
+.+. +...++|+|+||+|.-...+.+..++..+ -+-|++..+.
T Consensus 78 ~~i~-W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~ 120 (168)
T d2g82a1 78 KEIP-WAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA 120 (168)
T ss_dssp GGCC-TGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred HHCc-ccccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence 0010 11127999999999877788888999886 5555555443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=82.85 E-value=1.3 Score=32.78 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHH
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRF 233 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~ 233 (380)
...+|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~ 43 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT 43 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence 3468999999999998887777766 45899999888654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=82.75 E-value=0.39 Score=40.99 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.0
Q ss_pred EEEEcCCHHHHHHHHHHH-----HcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGAR-----IAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~-----~~g~~~vi~~~~~ 229 (380)
|+|+|+|..|++++.++. ..|. +|+++++.
T Consensus 10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~ 44 (360)
T d1pn0a1 10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKR 44 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCC
Confidence 889999999998776663 4688 88888764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=82.51 E-value=0.45 Score=39.39 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
++|||+|+ |-+|...+..+...|. +|++++++.
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence 67999998 9999999999988898 899888754
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.48 E-value=0.39 Score=38.36 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCChhHHHHHH----hcCCceEecCCCCCccHHHHHHHH---hC
Q 016933 193 PERGSSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSSKRFEEAK----KFGVTDFVNTSEHDRPIQEVIAEM---TN 263 (380)
Q Consensus 193 ~~~g~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~~~~~~~~----~lG~~~vi~~~~~~~~~~~~~~~~---~~ 263 (380)
..+.++||=+|.+ .|..++.+|+++ +. +|++++.+++..+.++ ..|...-+.....+ ..+.+.++ ..
T Consensus 54 ~~kpk~ILEiGt~-~G~Sti~la~al~~~g-~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd--~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 54 EYSPSLVLELGAY-CGYSAVRMARLLQPGA-RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA--SQDLIPQLKKKYD 129 (214)
T ss_dssp HHCCSEEEEECCT-TSHHHHHHHTTCCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC--HHHHGGGHHHHSC
T ss_pred hhCCCEEEEEccC-chhHHHHHHHhCCCcc-EEEEEeccHHHHHHHHHHHHHcCCCccceeeecc--ccccccchhhccc
Confidence 3344788888864 366778888876 44 9999999998777664 35653322222222 33333332 22
Q ss_pred -CCccEEEEcccChh-----hHHHHHHHhhcCCcEEEE
Q 016933 264 -GGVDRSVECTGNID-----NMISAFECVHDGWGVAVL 295 (380)
Q Consensus 264 -~~~d~v~d~~g~~~-----~~~~~~~~l~~~~G~~v~ 295 (380)
+.+|.+|--..... .+...++.++++ |.++.
T Consensus 130 ~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv~ 166 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLLA 166 (214)
T ss_dssp CCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEEE
T ss_pred ccccceeeecccccccccHHHHHHHhCccCCC-cEEEE
Confidence 36898764322211 133445568885 76543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=82.25 E-value=0.59 Score=38.52 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=26.0
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
|+|+|+|.+|+.++.-+...|. +|+++++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 7889999999998888888899 89999753
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.03 E-value=2.7 Score=33.75 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHH-HHcCCcEEEEEcC
Q 016933 194 ERGSSVAVFGLGAVGLAAAEGA-RIAGASRIIGVDR 228 (380)
Q Consensus 194 ~~g~~vlI~G~g~~G~~ai~la-~~~g~~~vi~~~~ 228 (380)
-+|.+|+|.|.|.+|..+++++ +..|+ +|+++..
T Consensus 30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vsD 64 (239)
T d1gtma1 30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVSD 64 (239)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEEC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeeccc
Confidence 4789999999999999999876 45788 7877744
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.02 E-value=1.2 Score=34.93 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=41.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHcCCc-EEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEEEEccc
Q 016933 197 SSVAVFGL-GAVGLAAAEGARIAGAS-RIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 274 (380)
Q Consensus 197 ~~vlI~G~-g~~G~~ai~la~~~g~~-~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 274 (380)
++|||+|+ |-+|...+..+...|.. +|++..+++.. ....+ .....+ +.+.... .....|.|++++|
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~-~~~~~d--~~~~~~~-~~~~~d~vi~~~g 71 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRL-DNPVGP--LAELLPQ-LDGSIDTAFCCLG 71 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTE-ECCBSC--HHHHGGG-CCSCCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hcccc-cccccc--hhhhhhc-cccchheeeeeee
Confidence 78999998 99999999888877752 56666554311 00011 111111 4333222 2336899999987
Q ss_pred C
Q 016933 275 N 275 (380)
Q Consensus 275 ~ 275 (380)
.
T Consensus 72 ~ 72 (212)
T d2a35a1 72 T 72 (212)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.89 E-value=0.57 Score=39.64 Aligned_cols=31 Identities=42% Similarity=0.623 Sum_probs=27.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
-|+|+|+|..|+.|+.-|...|+ +|++++..
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~ 51 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKA 51 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 48899999999999999988999 88888653
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=81.85 E-value=0.38 Score=39.97 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=26.1
Q ss_pred eEEEEcCCHHHHHHHH-HHHHcCCcEEEEEcCCh
Q 016933 198 SVAVFGLGAVGLAAAE-GARIAGASRIIGVDRSS 230 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~-la~~~g~~~vi~~~~~~ 230 (380)
-|+|+|+|..|+.++. +|+..|. +|++++..+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence 3889999999998765 5666799 999998764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=81.62 E-value=0.65 Score=38.79 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=25.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRS 229 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~ 229 (380)
.|+|+|+|.+|++++.-+...|..+|++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 48999999999987766666786468888764
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=81.44 E-value=1.2 Score=31.41 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=25.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHc---CCcEEEEEcCC
Q 016933 196 GSSVAVFGLGAVGLAAAEGARIA---GASRIIGVDRS 229 (380)
Q Consensus 196 g~~vlI~G~g~~G~~ai~la~~~---g~~~vi~~~~~ 229 (380)
.++++|+|+|.+|.-.+++...+ |. +|..+.++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~ 53 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRG 53 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESS
T ss_pred CCeEEEECCChHHHHHHHHhHhhccccc-ccceeccc
Confidence 47899999999999888776554 66 78777654
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=81.02 E-value=1.4 Score=36.31 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=40.3
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCC-CccEEEEccc
Q 016933 199 VAVFGL-GAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTG 274 (380)
Q Consensus 199 vlI~G~-g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~-~~d~v~d~~g 274 (380)
|||+|+ |-+|...+..+...|..+|++++ ++..+...+.+.......+..+ +.+.+.....- .+++++.+.+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKED----FLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHH----HHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccchH----HHHHHhhhhcccchhhhhhhcc
Confidence 799987 99999888777777875788875 2333333344443322222111 22222222222 5677776653
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.01 E-value=5.6 Score=30.84 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=57.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcCChhH----------HHHHHhcCCceEecCCCCCccHHHHHHHHhCCCcc
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDRSSKR----------FEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVD 267 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~~~~~----------~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d 267 (380)
+|++.|.+.+|..+++.+...|. .|.++.+.+++ .+++++.|.......+-.+..+.+.+++. .+|
T Consensus 2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~---~~D 77 (203)
T d2blna2 2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQL---SPD 77 (203)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHT---CCS
T ss_pred eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhh---ccc
Confidence 57788988899999998888898 66555443221 35566667653322222334455555553 689
Q ss_pred EEEEcccChhhHHHHHHHhhcCCcEEEEEcCC
Q 016933 268 RSVECTGNIDNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 268 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+++-+... ..+..-+-...+. |.+.+-...
T Consensus 78 lii~~g~~-~ii~~~il~~~~~-~~iN~H~sl 107 (203)
T d2blna2 78 VIFSFYYR-HLIYDEILQLAPA-GAFNLHGSL 107 (203)
T ss_dssp EEEEESCC-SCCCHHHHTTCTT-CEEEEESSC
T ss_pred ceeeeecc-cchhcccchhhHH-HHHHHhhhc
Confidence 99877544 3444333333453 677666554
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.93 E-value=0.58 Score=37.47 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEEcC
Q 016933 199 VAVFGLGAVGLAAAEGARIAGASRIIGVDR 228 (380)
Q Consensus 199 vlI~G~g~~G~~ai~la~~~g~~~vi~~~~ 228 (380)
|+|+|+|+.|+.|+..|..+|. +|+.++.
T Consensus 6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~ 34 (235)
T d1h6va1 6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF 34 (235)
T ss_dssp EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 7888999999999999999999 8888874
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=80.92 E-value=1.7 Score=32.15 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=30.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcC-CcEEEEEcCChhHH
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAG-ASRIIGVDRSSKRF 233 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g-~~~vi~~~~~~~~~ 233 (380)
++|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~ 39 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV 39 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence 57889999999988888777666 45899999888763
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=80.91 E-value=0.73 Score=39.25 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=25.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCC-cEEEEEcCCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIAGA-SRIIGVDRSS 230 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~g~-~~vi~~~~~~ 230 (380)
++|+|+|||..|++++..++..|. .+|+++.+++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 579999999999988765554442 2898887764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.78 E-value=1.5 Score=37.10 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=32.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcC----ChhHHHHHHhc
Q 016933 196 GSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDR----SSKRFEEAKKF 239 (380)
Q Consensus 196 g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~----~~~~~~~~~~l 239 (380)
-++|||+|+ |-+|...+..+...|. +|+++++ +.++.+.++.+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~ 63 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSL 63 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHHh
Confidence 368999997 9999999998888999 8999875 33444444443
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=80.77 E-value=8.6 Score=28.92 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=56.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcC----CcEEEEEcC--ChhHHHHHHhcCC-------ce-------Eec------CCCCC
Q 016933 198 SVAVFGLGAVGLAAAEGARIAG----ASRIIGVDR--SSKRFEEAKKFGV-------TD-------FVN------TSEHD 251 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g----~~~vi~~~~--~~~~~~~~~~lG~-------~~-------vi~------~~~~~ 251 (380)
+|.|.|-|-+|.+....+...+ . .|+++.. +.+....+-++-. +. +++ ++..+
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~ 81 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN 81 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence 4788899999999887765432 3 6777753 3444445533211 00 110 01111
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPS 300 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~ 300 (380)
. +.+ .+..-++|+|+||+|.-.....+.++|..+ -+-|++..+.
T Consensus 82 --p-~~i-~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~ 125 (173)
T d1obfo1 82 --P-AQL-PWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG 125 (173)
T ss_dssp --G-GGS-CTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred --H-HHC-cccccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence 0 000 011128999999999877778888999886 6666665544
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=80.65 E-value=6.5 Score=29.92 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=60.8
Q ss_pred cCCCCCCeEEEEcC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCCCCCccHHHHHHHHhCCCccEE
Q 016933 191 AKPERGSSVAVFGL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRS 269 (380)
Q Consensus 191 ~~~~~g~~vlI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~~~~~~~~~~~~~~~~~~~d~v 269 (380)
..+++|.. .|-++ |.=|+.. .+++. +. +|++++++++....++++-.+.+--++..-..+.+.+.....+.+|.|
T Consensus 14 l~~~~g~~-~vD~T~G~GGhs~-~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 14 LAVRPGGV-YVDATLGGAGHAR-GILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp HTCCTTCE-EEETTCTTSHHHH-HHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred cCCCCCCE-EEEeCCCCcHHHH-HHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 35677775 45654 5445543 33443 44 999999999999888875433322122221225555555444478876
Q ss_pred -EEcccCh---------------hhHHHHHHHhhcCCcEEEEEcCC
Q 016933 270 -VECTGNI---------------DNMISAFECVHDGWGVAVLVGVP 299 (380)
Q Consensus 270 -~d~~g~~---------------~~~~~~~~~l~~~~G~~v~~g~~ 299 (380)
+|. |-. ..+....+.++++ |+++.+...
T Consensus 90 l~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fh 133 (182)
T d1wg8a2 90 LADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFH 133 (182)
T ss_dssp EEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECS
T ss_pred EEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEecc
Confidence 565 321 1366777778886 887766543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.55 E-value=0.96 Score=35.98 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHc--CCcEEEEEcCCh
Q 016933 197 SSVAVFGLGAVGLAAAEGARIA--GASRIIGVDRSS 230 (380)
Q Consensus 197 ~~vlI~G~g~~G~~ai~la~~~--g~~~vi~~~~~~ 230 (380)
.+|+|+|+|+.|+.|+..++.. |+ +|++++..+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence 3799999999999998866543 67 898887665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=80.52 E-value=1.3 Score=31.93 Aligned_cols=61 Identities=11% Similarity=-0.029 Sum_probs=44.8
Q ss_pred hhccCCCCCCeEEEE-cC-CHHHHHHHHHHHHcCCcEEEEEcCChhHHHHHHhcCCceEecCC
Q 016933 188 LNVAKPERGSSVAVF-GL-GAVGLAAAEGARIAGASRIIGVDRSSKRFEEAKKFGVTDFVNTS 248 (380)
Q Consensus 188 ~~~~~~~~g~~vlI~-G~-g~~G~~ai~la~~~g~~~vi~~~~~~~~~~~~~~lG~~~vi~~~ 248 (380)
+..++++.-+.+++. +. -..-.++...++..+..++++-..+.+..+.++++|+++++++.
T Consensus 57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~ 119 (134)
T d2hmva1 57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE 119 (134)
T ss_dssp HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence 344556555666553 44 35556666777888877899998999999999999999998653
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=80.48 E-value=3.9 Score=30.84 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=60.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCcEEEEEcC---ChhHHHHHHhc----CC---ce-------Eec--------CCCCC-
Q 016933 198 SVAVFGLGAVGLAAAEGARIAGASRIIGVDR---SSKRFEEAKKF----GV---TD-------FVN--------TSEHD- 251 (380)
Q Consensus 198 ~vlI~G~g~~G~~ai~la~~~g~~~vi~~~~---~~~~~~~~~~l----G~---~~-------vi~--------~~~~~- 251 (380)
+|.|.|-|-+|.+....+...+. .++++.. +.+....+-++ |. +. +++ ..++.
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~ 80 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN 80 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence 57899999999999998887888 6777743 33455555442 11 00 111 11100
Q ss_pred ccHHHHHHHHhCCCccEEEEcccChhhHHHHHHHhhcCCcEEEEEcCCCC
Q 016933 252 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSK 301 (380)
Q Consensus 252 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~ 301 (380)
-.|.+ -++|+|+||+|.-...+.+..++..+ -+-|++..+..
T Consensus 81 i~W~~-------~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~~ 122 (169)
T d1dssg1 81 IPWSK-------AGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPSA 122 (169)
T ss_dssp CCHHH-------HTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCCS
T ss_pred CCccc-------cCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCcc
Confidence 01211 27999999999877788888999886 66666655543
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.33 E-value=3.7 Score=34.30 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=59.6
Q ss_pred EEE-cCCHHHHHHHHHHHHcCCcEEEEEc--CChhHHHHHHhcCCceEecCCCCCcc-----------------------
Q 016933 200 AVF-GLGAVGLAAAEGARIAGASRIIGVD--RSSKRFEEAKKFGVTDFVNTSEHDRP----------------------- 253 (380)
Q Consensus 200 lI~-G~g~~G~~ai~la~~~g~~~vi~~~--~~~~~~~~~~~lG~~~vi~~~~~~~~----------------------- 253 (380)
+|. .+|..|.+.+..|+.+|.+-++++. .++.+.+.++.+|++.+......+..
T Consensus 72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~ 151 (318)
T d1v71a1 72 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDHPH 151 (318)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSSHH
T ss_pred eeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccccc
Confidence 444 4599999999999999996555553 46688899999999765422221110
Q ss_pred -------HHHHHHHHhCCCccEEEEcccChhhHH---HHHHHhhcCCcEEEEEc
Q 016933 254 -------IQEVIAEMTNGGVDRSVECTGNIDNMI---SAFECVHDGWGVAVLVG 297 (380)
Q Consensus 254 -------~~~~~~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~~G~~v~~g 297 (380)
....+.+.. +.+|++|-++|+..++. ..++...+. .+++-+.
T Consensus 152 ~~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~-~~ii~v~ 203 (318)
T d1v71a1 152 VLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPN-CEVYGVE 203 (318)
T ss_dssp HHHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred cccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCC-ceeeccc
Confidence 111111111 35788888888755433 445556665 6666553
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.27 E-value=1.4 Score=31.00 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCc--EEEEEcCC
Q 016933 195 RGSSVAVFGLGAVGLAAAEGARIAGAS--RIIGVDRS 229 (380)
Q Consensus 195 ~g~~vlI~G~g~~G~~ai~la~~~g~~--~vi~~~~~ 229 (380)
.+++++|+|+|.+|.-++.....+|.+ .|..+.+.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~ 55 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG 55 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence 457899999999999988887777642 57777554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.04 E-value=0.85 Score=38.79 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=28.0
Q ss_pred CeE-EEEcC-CHHHHHHHHHHHHcCCcEEEEEcCCh
Q 016933 197 SSV-AVFGL-GAVGLAAAEGARIAGASRIIGVDRSS 230 (380)
Q Consensus 197 ~~v-lI~G~-g~~G~~ai~la~~~g~~~vi~~~~~~ 230 (380)
++| ||+|+ |-+|...+..+...|+ +|+++++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 357 99997 9999998888888899 999998753
|