Citrus Sinensis ID: 016978
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | 2.2.26 [Sep-21-2011] | |||||||
| Q96533 | 379 | Alcohol dehydrogenase cla | yes | no | 0.989 | 0.989 | 0.912 | 0.0 | |
| P93629 | 381 | Alcohol dehydrogenase cla | N/A | no | 0.992 | 0.986 | 0.917 | 0.0 | |
| A2XAZ3 | 381 | Alcohol dehydrogenase cla | N/A | no | 0.986 | 0.981 | 0.917 | 0.0 | |
| Q0DWH1 | 381 | Alcohol dehydrogenase cla | yes | no | 0.986 | 0.981 | 0.914 | 0.0 | |
| P80572 | 378 | Alcohol dehydrogenase cla | N/A | no | 0.997 | 1.0 | 0.875 | 0.0 | |
| P79896 | 376 | Alcohol dehydrogenase cla | N/A | no | 0.986 | 0.994 | 0.693 | 1e-154 | |
| P81600 | 375 | Alcohol dehydrogenase cla | N/A | no | 0.984 | 0.994 | 0.673 | 1e-150 | |
| Q3ZC42 | 374 | Alcohol dehydrogenase cla | yes | no | 0.978 | 0.991 | 0.690 | 1e-148 | |
| P86884 | 376 | Alcohol dehydrogenase cla | N/A | no | 0.986 | 0.994 | 0.68 | 1e-148 | |
| P80467 | 373 | Alcohol dehydrogenase cla | N/A | no | 0.976 | 0.991 | 0.692 | 1e-147 |
| >sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/375 (91%), Positives = 360/375 (96%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVRIKIL+TALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVTEVQ GDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G G+MMNDRKSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAK AGASR+IGIDID KK++ AK FGV
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
EFVNPKDHDKPIQ+V+VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS
Sbjct: 241 NEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSR+QVPWLV+KYM KEIKVDEY+THN+TLGEIN+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINK 360
Query: 361 AFRYMHGGDCLRCVL 375
AF +H G CLRCVL
Sbjct: 361 AFDLLHEGTCLRCVL 375
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Plays a central role in formaldehyde detoxification. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8EC: 4 |
| >sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/376 (91%), Positives = 360/376 (95%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG
Sbjct: 65 FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTE
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTE 244
Query: 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
FVNPK+HDKPIQQVLVDLTDGGVDYSFECIGNVS+MRAALEC KGWGTSVIVGVAASGQ
Sbjct: 245 FVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAASGQ 304
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
EISTRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 305 EISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAF 364
Query: 363 RYMHGGDCLRCVLKMQ 378
+H G CLRCVL MQ
Sbjct: 365 HLLHEGGCLRCVLAMQ 380
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Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1 | Back alignment and function description |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/374 (91%), Positives = 358/374 (95%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
ST+GQVITCKAAVAWE NKP+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4 STQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGVT
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVT 243
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
EFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASG
Sbjct: 244 EFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASG 303
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+A
Sbjct: 304 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363
Query: 362 FRYMHGGDCLRCVL 375
F +H G CLRCVL
Sbjct: 364 FDLLHEGGCLRCVL 377
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Oryza sativa subsp. indica (taxid: 39946) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/374 (91%), Positives = 358/374 (95%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
ST+GQVITCKAAVAWE N+P+ IEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4 STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 64 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 123
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV T
Sbjct: 124 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVST 183
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
GLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGVT
Sbjct: 184 GLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVT 243
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
EFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASG
Sbjct: 244 EFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASG 303
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+ KEIKVDEYVTH+M L +IN+A
Sbjct: 304 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKA 363
Query: 362 FRYMHGGDCLRCVL 375
F +H G CLRCVL
Sbjct: 364 FDLLHEGGCLRCVL 377
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Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/378 (87%), Positives = 355/378 (93%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+T+GQVITCKAAVAWEPNKPL IEDV+VAPPQA EVRI+ILFTALCHTDAYT GKDPEG
Sbjct: 1 ATQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEG 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LFPCILGHEAAGIVESVGEGVT+V+PGDHVIP YQAEC ECKFCKS KTNLCGKVR ATG
Sbjct: 61 LFPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATG 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
GVMM DRKSRFS+ GKPIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPT
Sbjct: 121 VGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
GLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID K+D AKNFGVT
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVT 240
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
EF+NPKDH+KPIQQV++DLTDGGVDYSFEC+GNVSVMR+ALECCHKGWGTSVIVGVAASG
Sbjct: 241 EFINPKDHEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASG 300
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+KKEIKVDEY+THN+TL EIN+A
Sbjct: 301 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKA 360
Query: 362 FRYMHGGDCLRCVLKMQD 379
F +H G CLRCVL + D
Sbjct: 361 FDLLHEGQCLRCVLAVHD 378
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Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P79896|ADHX_SPAAU Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/375 (69%), Positives = 303/375 (80%), Gaps = 1/375 (0%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M T G+VI CKAAVAWEP KPL IE+V+VAPP A EVRIK+ T +CHTDAYT SG DPE
Sbjct: 1 METAGKVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y +C ECKFCK+ KTNLC K+R
Sbjct: 61 GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQ 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G G ++ D+ SRF+ GK ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+
Sbjct: 121 GQG-LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGIS 179
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TG GA NTAKVEPGS AVFGLG VGLAV G K AGA+R+IGID++P KF+ AK FG
Sbjct: 180 TGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFETAKEFGA 239
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKDH KPIQ+VLV++TDGGVDYSFECIGNV +MRAALE CHKGWG SVI+GVA +
Sbjct: 240 TEFVNPKDHSKPIQEVLVEMTDGGVDYSFECIGNVQIMRAALEACHKGWGESVIIGVAGA 299
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGG+KS VP LV+ YM K++KVDE+VTH + +INE
Sbjct: 300 GQEISTRPFQLVTGRVWKGTAFGGWKSVESVPKLVEDYMSKKLKVDEFVTHTLPFEKINE 359
Query: 361 AFRYMHGGDCLRCVL 375
F MH G +R VL
Sbjct: 360 GFELMHAGKSIRTVL 374
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Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Sparus aurata (taxid: 8175) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P81600|ADHH_GADMO Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/374 (67%), Positives = 300/374 (80%), Gaps = 1/374 (0%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+T GQVI CKAAVAWE KPL +E+V+VAPP+AGEVRIK++ T +CHTDAYT SG DPEG
Sbjct: 1 ATAGQVIKCKAAVAWEAGKPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAYTLSGSDPEG 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
FP ILGHE AG+VESVGEGVT+ + GD VIP Y +C ECKFCK+ KTNLC K+R G
Sbjct: 61 AFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQG 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
G +M D SRF+ GK ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ T
Sbjct: 121 RG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGIST 179
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
G GA NTAKVEPGS AVFGLG VGLA G K AGA+R+IG+DI+P+KF +A FG T
Sbjct: 180 GYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGAT 239
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
E +NPKDH +P+Q+VLV++TDGGVDYSFECIGNV +MR+ALE CHKGWG SVI+GVA +G
Sbjct: 240 ECLNPKDHARPVQEVLVEMTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVAGAG 299
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEI+TRPFQLVTGRVWK TAFGG+KS VP LV+ YM K++KVDE+VTH + INE
Sbjct: 300 QEIATRPFQLVTGRVWKATAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEG 359
Query: 362 FRYMHGGDCLRCVL 375
F MH G +RCVL
Sbjct: 360 FDLMHAGKSIRCVL 373
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Gadus morhua (taxid: 8049) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|Q3ZC42|ADHX_BOVIN Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/372 (69%), Positives = 299/372 (80%), Gaps = 1/372 (0%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG +P
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNYPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
N AKVEPGS AVFGLG VGLAV G K AGA+R+IG+DI+ KF RAK FG +E +N
Sbjct: 183 ALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDINKDKFARAKEFGASECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI+
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEIA 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTH++ +INEAF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLM 362
Query: 366 HGGDCLRCVLKM 377
H G +R V+K+
Sbjct: 363 HAGKSIRTVVKL 374
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P86884|ADHX_SCYCA Alcohol dehydrogenase class-3 OS=Scyliorhinus canicula PE=1 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/375 (68%), Positives = 299/375 (79%), Gaps = 1/375 (0%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T G+VI CKAAVAWE KPL IE+++VAPP+A EVRIKI+ TA+CH+D+YT SG D EGL
Sbjct: 3 TVGKVIKCKAAVAWEAGKPLCIEEIEVAPPKAHEVRIKIIATAVCHSDSYTLSGSDSEGL 62
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FP ILGHE AGIVESVGEGVT V+ GD VIP Y +C +C FC + KTNLC K+R G
Sbjct: 63 FPVILGHEGAGIVESVGEGVTCVKAGDRVIPLYIPQCGDCNFCLNPKTNLCQKIRVTQGQ 122
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
G +M D+ SRF+ G+ +YH+MGTSTFS+YTVV D+SVAKID APLDKVCLLGCG+ TG
Sbjct: 123 G-LMPDKTSRFTCKGQLLYHYMGTSTFSEYTVVADISVAKIDEAAPLDKVCLLGCGISTG 181
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
GA NTAKVEPGS AVFGLG VGLA G KAAGA+R+IG+D++ KF +AK FG TE
Sbjct: 182 YGAAVNTAKVEPGSTCAVFGLGGVGLAGIMGCKAAGATRIIGVDLNKDKFTKAKEFGATE 241
Query: 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
++NPKD+DKPIQ+VLV LTDGGVDYSFECIGNV MRAALE CHKGWGTSVIVGVA +G
Sbjct: 242 YINPKDYDKPIQEVLVGLTDGGVDYSFECIGNVKTMRAALEACHKGWGTSVIVGVAPAGH 301
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
EI+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K++KVDE+VTH + +INE+F
Sbjct: 302 EIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVKEYMAKKLKVDEFVTHTLPFNQINESF 361
Query: 363 RYMHGGDCLRCVLKM 377
MH G +RCVL
Sbjct: 362 ELMHAGKSIRCVLSF 376
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Scyliorhinus canicula (taxid: 7830) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
| >sp|P80467|ADHX_UROHA Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/371 (69%), Positives = 295/371 (79%), Gaps = 1/371 (0%)
Query: 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
VI CKAAVAWE KPL IE+++VAPP+A EVR+KI+ TA+CHTDAYT SG DPEG FP I
Sbjct: 4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRVKIIATAVCHTDAYTLSGADPEGSFPVI 63
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LGHE AGIVESVGEGVT+ +PGD VIP Y +C ECKFC + KTNLC K+R G GVM
Sbjct: 64 LGHEGAGIVESVGEGVTKFKPGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGVM- 122
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
D SRF+ GK + HFMGTSTFS+YTVV D+S+ KI+ APLDKVCLLGCGV TG GA
Sbjct: 123 PDGTSRFTCKGKQVLHFMGTSTFSEYTVVADISLTKINASAPLDKVCLLGCGVSTGYGAA 182
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
NTAKVEPGS AVFGLG VGLAV G K AGASR+IGID++ KF +AK FG TE ++P
Sbjct: 183 LNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLNKDKFAKAKEFGATECISP 242
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA+GQEI+T
Sbjct: 243 ADFKKPIQEVLIEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIAT 302
Query: 307 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 366
RPFQLVTGR WKGTAFGG+KS VP LVD+YM K++KVDE+VTH + +INEAF MH
Sbjct: 303 RPFQLVTGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFELMH 362
Query: 367 GGDCLRCVLKM 377
G +R VLK
Sbjct: 363 AGKSIRSVLKF 373
|
Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione. Uromastyx hardwickii (taxid: 40250) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| 255585914 | 379 | alcohol dehydrogenase, putative [Ricinus | 1.0 | 1.0 | 0.926 | 0.0 | |
| 353703786 | 379 | alcohol dehydrogenase class III [Solanum | 0.994 | 0.994 | 0.923 | 0.0 | |
| 429840534 | 378 | alcohol dehydrogenase 2 [Diospyros kaki] | 0.994 | 0.997 | 0.923 | 0.0 | |
| 433286663 | 396 | Chain A, Crystal Structure Of S-nitrosog | 0.992 | 0.949 | 0.922 | 0.0 | |
| 224065517 | 379 | glutathione-dependent formaldehyde dehyd | 0.997 | 0.997 | 0.920 | 0.0 | |
| 325910821 | 379 | glutathione-dependent formaldehyde dehyd | 0.997 | 0.997 | 0.923 | 0.0 | |
| 242063486 | 381 | hypothetical protein SORBIDRAFT_04g03705 | 0.994 | 0.989 | 0.923 | 0.0 | |
| 195621922 | 381 | alcohol dehydrogenase class 3 [Zea mays] | 0.992 | 0.986 | 0.922 | 0.0 | |
| 194688556 | 381 | unknown [Zea mays] gi|194707152|gb|ACF87 | 0.992 | 0.986 | 0.922 | 0.0 | |
| 449445644 | 379 | PREDICTED: alcohol dehydrogenase class-3 | 0.989 | 0.989 | 0.92 | 0.0 |
| >gi|255585914|ref|XP_002533630.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223526488|gb|EEF28759.1| alcohol dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/379 (92%), Positives = 368/379 (97%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVI CKAAVA+EPNKPLVIEDVQVAPPQAGEVR++ILFTALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVIICKAAVAYEPNKPLVIEDVQVAPPQAGEVRVQILFTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR+CKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRDCKFCKSGKTNLCGKVRAAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KK+DRAK+FGV
Sbjct: 181 TGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKYDRAKDFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAAS
Sbjct: 241 TEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEY+THN+TL EIN+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNLTLVEINK 360
Query: 361 AFRYMHGGDCLRCVLKMQD 379
AF MH GDCLRCVL + D
Sbjct: 361 AFDLMHEGDCLRCVLSVHD 379
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353703786|ref|NP_001238796.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|283825505|gb|ADB43258.1| alcohol dehydrogenase class III [Solanum lycopersicum] gi|322719690|gb|ADX07743.1| alcohol dehydrogenase class III [Solanum habrochaites] gi|322719692|gb|ADX07744.1| alcohol dehydrogenase class III [Solanum chmielewskii] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/377 (92%), Positives = 366/377 (97%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDRAKNFGV
Sbjct: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEF+NPK+H++PIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAAS
Sbjct: 241 TEFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVP LVDKY+KKEIKVDEY+THNMTL +IN+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINK 360
Query: 361 AFRYMHGGDCLRCVLKM 377
AF MH GDCLR VL M
Sbjct: 361 AFDLMHDGDCLRVVLDM 377
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|429840534|gb|AGA15794.1| alcohol dehydrogenase 2 [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/377 (92%), Positives = 361/377 (95%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVITCKAAVAWEPNKPL IEDVQVAPPQAGEVRI+ILFTALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVITCKAAVAWEPNKPLAIEDVQVAPPQAGEVRIQILFTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVTEV PGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTEVHPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G GVMMNDRKSRFSING PIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVEPGSIVA+FGLGTVGLAVAEGAK+AGASR+IGIDID KKFD AKNFGV
Sbjct: 181 TGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDTAKNFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAAS
Sbjct: 241 TEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRS VPWLVDKY+KKEIKVDEY+THN+ L +INE
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSHVPWLVDKYLKKEIKVDEYITHNLALAQINE 360
Query: 361 AFRYMHGGDCLRCVLKM 377
AF MH G C RCVLKM
Sbjct: 361 AFHLMHEGGCFRCVLKM 377
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|433286663|pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286664|pdb|4DL9|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ gi|433286665|pdb|4DLA|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286666|pdb|4DLA|B Chain B, Crystal Structure Of S-nitrosoglutathione Reductase Apoenzyme From Tomato (solanum Lycopersicum) gi|433286667|pdb|4DLB|A Chain A, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione gi|433286668|pdb|4DLB|B Chain B, Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) Crystallized In Presence Of Nadh And Glutathione | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/376 (92%), Positives = 365/376 (97%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+K+L+TALCHTDAYTWSGKDPEG
Sbjct: 19 ATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEG 78
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LFPC+LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR ATG
Sbjct: 79 LFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATG 138
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APL+KVCLLGCGVPT
Sbjct: 139 VGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPT 198
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFDRAKNFGVT
Sbjct: 199 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVT 258
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
EF+NPK+H++PIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAASG
Sbjct: 259 EFINPKEHEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASG 318
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEISTRPFQLVTGRVWKGTAFGGFKSRSQVP LVDKY+KKEIKVDEY+THNMTL +IN+A
Sbjct: 319 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLADINKA 378
Query: 362 FRYMHGGDCLRCVLKM 377
F MH GDCLR VL M
Sbjct: 379 FDLMHDGDCLRVVLDM 394
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065517|ref|XP_002301836.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] gi|222843562|gb|EEE81109.1| glutathione-dependent formaldehyde dehydrogenase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/378 (92%), Positives = 364/378 (96%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVITC+AAVAWE NKPLVIE+VQVAPPQAGEVR+KILF ALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVITCRAAVAWEANKPLVIEEVQVAPPQAGEVRVKILFAALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRTAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGVP
Sbjct: 121 GVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFDRAK+FGV
Sbjct: 181 TGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDRAKDFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKDHDKPIQQVL+DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS
Sbjct: 241 TEFVNPKDHDKPIQQVLIDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVP LVDKYMKKEIKVDEY+THN+TL E+N+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYMKKEIKVDEYITHNLTLPEMNQ 360
Query: 361 AFRYMHGGDCLRCVLKMQ 378
AF +H G CLRCVL MQ
Sbjct: 361 AFDLLHEGSCLRCVLDMQ 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325910821|dbj|BAJ83825.1| glutathione-dependent formaldehyde dehydrogenase [Epipremnum aureum] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/378 (92%), Positives = 361/378 (95%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+TE QVITCKAAVAWE NKPL IEDV VAPPQAGEVRIKILFTALCHTDAYTWSGKDPE
Sbjct: 1 MATEAQVITCKAAVAWEANKPLAIEDVLVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR AT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G G+MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP+APL+KVCLLGCGV
Sbjct: 121 GVGIMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVA 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVE GSIVA+FGLGTVGLAVAEGAK AGASR+IGIDID KKFD AKNFGV
Sbjct: 181 TGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDVAKNFGV 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKD++KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS
Sbjct: 241 TEFVNPKDYEKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEY+THN+TLGEIN+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHNLTLGEINK 360
Query: 361 AFRYMHGGDCLRCVLKMQ 378
F +MH G CLRCVL Q
Sbjct: 361 GFDFMHEGSCLRCVLDTQ 378
|
Source: Epipremnum aureum Species: Epipremnum aureum Genus: Scindapsus Family: Araceae Order: Alismatales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242063486|ref|XP_002453032.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor] gi|241932863|gb|EES06008.1| hypothetical protein SORBIDRAFT_04g037050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/377 (92%), Positives = 362/377 (96%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
ST+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEG
Sbjct: 4 STQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LFPCILGHEAAG+VESVGEGVTEVQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG
Sbjct: 64 LFPCILGHEAAGVVESVGEGVTEVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATG 123
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPT
Sbjct: 124 VGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPT 183
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
GLGAVWNTAKVE GSIVAVFGLGTVGLAVAEGAKAAGASR+IGIDID KKFD AKNFGVT
Sbjct: 184 GLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFDVAKNFGVT 243
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG
Sbjct: 244 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 303
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
QEI+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYM KEIKVDEY+THNM L +IN+A
Sbjct: 304 QEIATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMNKEIKVDEYITHNMNLADINDA 363
Query: 362 FRYMHGGDCLRCVLKMQ 378
F +H G CLRCVL MQ
Sbjct: 364 FHLLHEGGCLRCVLAMQ 380
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195621922|gb|ACG32791.1| alcohol dehydrogenase class 3 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/376 (92%), Positives = 362/376 (96%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG
Sbjct: 65 FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTE
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTE 244
Query: 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
FVNPK+HDKPIQQVLVDLTDGGVDYSFECIGNVS+MRAALECCHKGWGTSVIVGVAASGQ
Sbjct: 245 FVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECCHKGWGTSVIVGVAASGQ 304
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
EISTRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 305 EISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAF 364
Query: 363 RYMHGGDCLRCVLKMQ 378
+H G CLRCVL MQ
Sbjct: 365 HLLHEGGCLRCVLAMQ 380
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|194688556|gb|ACF78362.1| unknown [Zea mays] gi|194707152|gb|ACF87660.1| unknown [Zea mays] gi|194707766|gb|ACF87967.1| unknown [Zea mays] gi|413939458|gb|AFW74009.1| putative alcohol dehydrogenase superfamily protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/376 (92%), Positives = 362/376 (96%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T+GQVITCKAAVA+EPNKPLVIEDVQVAPPQAGEVR+KILFTALCHTD YTWSGKDPEGL
Sbjct: 5 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGL 64
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAEC+ECKFCKSGKTNLCGKVR ATG
Sbjct: 65 FPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGV 124
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
GVMMND KSRFS+NGKPIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTG
Sbjct: 125 GVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTG 184
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
LGAVWNTAKVE GS+VAVFGLGTVGLAVAEGAKAAGASRVIGIDID KKFD AKNFGVTE
Sbjct: 185 LGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTE 244
Query: 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
FVNPK+HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ
Sbjct: 245 FVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 304
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
EI+TRPFQLVTGRVWKGTAFGGFKSR+QVPWLVDKYMKKEIKVDEY+THNM L +IN+AF
Sbjct: 305 EIATRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAF 364
Query: 363 RYMHGGDCLRCVLKMQ 378
+H G CLRCVL MQ
Sbjct: 365 HLLHEGGCLRCVLAMQ 380
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445644|ref|XP_004140582.1| PREDICTED: alcohol dehydrogenase class-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/375 (92%), Positives = 363/375 (96%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M+T+GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVR+KIL+TALCHTDAYTWSGKDPE
Sbjct: 1 MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFPCILGHEAAGIVESVGEGVT+VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT
Sbjct: 61 GLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G GVMM+DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVP
Sbjct: 121 GVGVMMSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP 180
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TGLGAVWNTAKVEPGS VA+FGLGTVGLAVAEGAKAAGASR+IGIDID KKF+ AK FG
Sbjct: 181 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDNKKFEIAKKFGA 240
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
EFVNPK+HDKPIQQV+VDLTDGGVDYSFECIGNV+VMR+ALECCHKGWG SVIVGVAAS
Sbjct: 241 NEFVNPKEHDKPIQQVIVDLTDGGVDYSFECIGNVNVMRSALECCHKGWGQSVIVGVAAS 300
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLV+KY+KKEIKVDEY+THN+TL EIN+
Sbjct: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLEEINK 360
Query: 361 AFRYMHGGDCLRCVL 375
AF MHGGDCLRCVL
Sbjct: 361 AFDLMHGGDCLRCVL 375
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 379 | ||||||
| ZFIN|ZDB-GENE-011003-1 | 376 | adh5 "alcohol dehydrogenase 5" | 0.989 | 0.997 | 0.670 | 2.2e-137 | |
| UNIPROTKB|P11766 | 374 | ADH5 "Alcohol dehydrogenase cl | 0.978 | 0.991 | 0.672 | 2.9e-135 | |
| UNIPROTKB|F1S0C1 | 374 | ADH5 "Uncharacterized protein" | 0.978 | 0.991 | 0.674 | 4.7e-135 | |
| UNIPROTKB|F1PLM5 | 376 | F1PLM5 "Uncharacterized protei | 0.978 | 0.986 | 0.674 | 7.7e-135 | |
| UNIPROTKB|J9PA83 | 374 | ADH5 "Uncharacterized protein" | 0.978 | 0.991 | 0.674 | 7.7e-135 | |
| UNIPROTKB|F1NI89 | 370 | ADH5 "Uncharacterized protein" | 0.973 | 0.997 | 0.683 | 2.6e-134 | |
| UNIPROTKB|F1NKS5 | 374 | ADH5 "Uncharacterized protein" | 0.973 | 0.986 | 0.683 | 2.6e-134 | |
| RGD|2292706 | 374 | Adh5 "alcohol dehydrogenase 5 | 0.978 | 0.991 | 0.677 | 3.3e-134 | |
| UNIPROTKB|P12711 | 374 | Adh5 "Alcohol dehydrogenase cl | 0.978 | 0.991 | 0.677 | 3.3e-134 | |
| MGI|MGI:87929 | 374 | Adh5 "alcohol dehydrogenase 5 | 0.978 | 0.991 | 0.674 | 1.1e-133 |
| ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 252/376 (67%), Positives = 292/376 (77%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M T G+VI CKAAVAWE KPL IE+V+VAPP+A EVR+KI T +CHTDAYT SG DPE
Sbjct: 1 MDTTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPE 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
GLFP ILGHE AG VESVGEGVT+ +PGD VIP Y +C ECKFCK+ KTNLC K+R
Sbjct: 61 GLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQ 120
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G G +M D SRF+ GK ++HFMGTSTFS+YTVV ++S+AK+D APLDKVCLLGCG+
Sbjct: 121 GQG-LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGIS 179
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGV 240
TG GA NTAKVE GS AVFGLG V +R+IGID++P KF+ AK FG
Sbjct: 180 TGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGA 239
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TEFVNPKDH KPIQ+VLV+LTDGGVDYSFECIGNV +MRAALE CHKGWGTSVI+GVA +
Sbjct: 240 TEFVNPKDHSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGA 299
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
GQEISTRPFQLVTGR WKGTAFGG+KS VP LV+ YM K++ VDE+VTH + +INE
Sbjct: 300 GQEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINE 359
Query: 361 AFRYMHGGDCLRCVLK 376
AF MH G +R VL+
Sbjct: 360 AFDLMHAGKSIRAVLQ 375
|
|
| UNIPROTKB|P11766 ADH5 "Alcohol dehydrogenase class-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 250/372 (67%), Positives = 293/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
+VI CKAAVAWE KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAK+EPGS+ AVFGLG V SR+IG+DI+ KF RAK FG TE +N
Sbjct: 183 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI+
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIA 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELM 362
Query: 366 HGGDCLRCVLKM 377
H G +R V+K+
Sbjct: 363 HSGKSIRTVVKI 374
|
|
| UNIPROTKB|F1S0C1 ADH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 251/372 (67%), Positives = 291/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCGV TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +N
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGASECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI+
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIA 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS +P LV +YM K+IKVDE+VTHN+ +INEAF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHNLPFDQINEAFELM 362
Query: 366 HGGDCLRCVLKM 377
H G +R V+K+
Sbjct: 363 HAGKSIRTVIKL 374
|
|
| UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
Identities = 251/372 (67%), Positives = 293/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 6 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 65
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 66 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 124
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 125 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 184
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +N
Sbjct: 185 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 244
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAASG+EI+
Sbjct: 245 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIA 304
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGRVWKGTAFGG+KS VP LV +YM ++IKVDE+VTH+++ +INEAF +
Sbjct: 305 TRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLL 364
Query: 366 HGGDCLRCVLKM 377
H G +R V+K+
Sbjct: 365 HAGKSIRTVVKL 376
|
|
| UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
Identities = 251/372 (67%), Positives = 293/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IG+DI+ KF RAK FG +E +N
Sbjct: 183 ALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAASG+EI+
Sbjct: 243 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIA 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGRVWKGTAFGG+KS VP LV +YM ++IKVDE+VTH+++ +INEAF +
Sbjct: 303 TRPFQLVTGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLL 362
Query: 366 HGGDCLRCVLKM 377
H G +R V+K+
Sbjct: 363 HAGKSIRTVVKL 374
|
|
| UNIPROTKB|F1NI89 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 253/370 (68%), Positives = 288/370 (77%)
Query: 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
VI CKAAVAWE KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct: 1 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 60
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LGHE AGIVESVGEGVT+V+PGD VIP Y +C ECK+CK+ KTNLC K+R G G +M
Sbjct: 61 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRFTQGKG-LM 119
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
D RF+ GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA
Sbjct: 120 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 179
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNP 246
NTAKVEPGS AVFGLG V SR+IGIDI+ + +AK FG E ++P
Sbjct: 180 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 239
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
+D +KPIQ+VLV++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA+GQEIST
Sbjct: 240 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIST 299
Query: 307 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 366
RPFQLVTGR WKGTAFGG+KS VP LV+ YM K+IKVDE+VTH + +INEAF +H
Sbjct: 300 RPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDLLH 359
Query: 367 GGDCLRCVLK 376
G +R VLK
Sbjct: 360 KGKSIRTVLK 369
|
|
| UNIPROTKB|F1NKS5 ADH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 253/370 (68%), Positives = 288/370 (77%)
Query: 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
VI CKAAVAWE KPL IE+V+VAPP+A EVRIKI+ TALCHTDAYT SG DPEG FP I
Sbjct: 5 VIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIVATALCHTDAYTLSGADPEGCFPVI 64
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LGHE AGIVESVGEGVT+V+PGD VIP Y +C ECK+CK+ KTNLC K+R G G +M
Sbjct: 65 LGHEGAGIVESVGEGVTKVKPGDTVIPLYIPQCGECKYCKNPKTNLCQKIRVTQGKG-LM 123
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
D RF+ GK IYHFMGTSTFS+YTVV D+SVAKIDP AP DKVCLLGCG+ TG GA
Sbjct: 124 PDGTIRFTCKGKQIYHFMGTSTFSEYTVVADISVAKIDPAAPFDKVCLLGCGISTGYGAA 183
Query: 187 WNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNP 246
NTAKVEPGS AVFGLG V SR+IGIDI+ + +AK FG E ++P
Sbjct: 184 VNTAKVEPGSTCAVFGLGGVGLATVMGCKAAGASRIIGIDINKNTYAKAKEFGAAECISP 243
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
+D +KPIQ+VLV++TDGGVDYSFECIGNV VMRAALE CHKGWG SVIVGVAA+GQEIST
Sbjct: 244 QDFEKPIQEVLVEMTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIST 303
Query: 307 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 366
RPFQLVTGR WKGTAFGG+KS VP LV+ YM K+IKVDE+VTH + +INEAF +H
Sbjct: 304 RPFQLVTGRTWKGTAFGGWKSVDSVPKLVNDYMAKKIKVDEFVTHTLPFDKINEAFDLLH 363
Query: 367 GGDCLRCVLK 376
G +R VLK
Sbjct: 364 KGKSIRTVLK 373
|
|
| RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 252/372 (67%), Positives = 291/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG TE +N
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D K IQ+VL+++TDGGVD+SFECIGNV VMR+ALE HKGWG SV+VGVAASG+EIS
Sbjct: 243 PQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEIS 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLM 362
Query: 366 HGGDCLRCVLKM 377
H G+ +R VLKM
Sbjct: 363 HSGNSIRTVLKM 374
|
|
| UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 252/372 (67%), Positives = 291/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GKPI HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG TE +N
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECIN 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D K IQ+VL+++TDGGVD+SFECIGNV VMR+ALE HKGWG SV+VGVAASG+EIS
Sbjct: 243 PQDFSKSIQEVLIEMTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEIS 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLM 362
Query: 366 HGGDCLRCVLKM 377
H G+ +R VLKM
Sbjct: 363 HSGNSIRTVLKM 374
|
|
| MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 251/372 (67%), Positives = 291/372 (78%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
QVI CKAAVAWE KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP
Sbjct: 4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPV 63
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
ILGHE AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G +
Sbjct: 64 ILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-L 122
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
M D SRF+ GK ++HFMGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA
Sbjct: 123 MPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGA 182
Query: 186 VWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVN 245
NTAKVEPGS AVFGLG V SR+IGIDI+ KF +AK FG +E ++
Sbjct: 183 AVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECIS 242
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P+D K IQ+VLV++TDGGVDYSFECIGNV VMR+ALE HKGWG SV+VGVAASG+EIS
Sbjct: 243 PQDFSKSIQEVLVEMTDGGVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEIS 302
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VT N++ +IN+AF M
Sbjct: 303 TRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINQAFDLM 362
Query: 366 HGGDCLRCVLKM 377
H GD +R VLKM
Sbjct: 363 HSGDSIRTVLKM 374
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q1RFI7 | FRMA_ECOUT | 1, ., 1, ., 1, ., - | 0.6311 | 0.9630 | 0.9891 | yes | no |
| P80467 | ADHX_UROHA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6927 | 0.9762 | 0.9919 | N/A | no |
| Q96533 | ADHX_ARATH | 1, ., 1, ., 1, ., 2, 8, 4 | 0.912 | 0.9894 | 0.9894 | yes | no |
| P25141 | ADH1_PETHY | 1, ., 1, ., 1, ., 1 | 0.6005 | 0.9947 | 0.9869 | N/A | no |
| A7ZIA4 | FRMA_ECO24 | 1, ., 1, ., 1, ., - | 0.6338 | 0.9630 | 0.9891 | yes | no |
| P25437 | FRMA_ECOLI | 1, ., 1, ., 1, ., - | 0.6311 | 0.9630 | 0.9891 | N/A | no |
| P73138 | FRMA_SYNY3 | 1, ., 1, ., 1, ., - | 0.6438 | 0.9604 | 0.9864 | N/A | no |
| P19854 | ADHX_HORSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6854 | 0.9788 | 0.9919 | yes | no |
| P14674 | ADH2_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5925 | 0.9973 | 0.9947 | N/A | no |
| P14675 | ADH3_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5925 | 0.9973 | 0.9947 | N/A | no |
| A2XAZ3 | ADHX_ORYSI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9171 | 0.9868 | 0.9816 | N/A | no |
| B1J085 | FRMA_ECOLC | 1, ., 1, ., 1, ., - | 0.6338 | 0.9630 | 0.9891 | yes | no |
| P14673 | ADH1_SOLTU | 1, ., 1, ., 1, ., 1 | 0.5952 | 0.9973 | 0.9947 | N/A | no |
| P12711 | ADHX_RAT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.7016 | 0.9788 | 0.9919 | yes | no |
| O74685 | FADH_PICPA | 1, ., 1, ., 1, ., - | 0.5947 | 0.9947 | 0.9947 | yes | no |
| Q0TKS7 | FRMA_ECOL5 | 1, ., 1, ., 1, ., - | 0.6311 | 0.9630 | 0.9891 | yes | no |
| P81601 | ADHL_GADMO | 1, ., 1, ., 1, ., 2, 8, 4 | 0.664 | 0.9868 | 0.9973 | N/A | no |
| P81600 | ADHH_GADMO | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6737 | 0.9841 | 0.9946 | N/A | no |
| P93629 | ADHX_MAIZE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9175 | 0.9920 | 0.9868 | N/A | no |
| A7ZX04 | FRMA_ECOHS | 1, ., 1, ., 1, ., - | 0.6338 | 0.9630 | 0.9891 | yes | no |
| P48977 | ADH_MALDO | 1, ., 1, ., 1, ., 1 | 0.5846 | 0.9973 | 0.9947 | N/A | no |
| P00333 | ADH1_MAIZE | 1, ., 1, ., 1, ., 1 | 0.5936 | 1.0 | 1.0 | N/A | no |
| P28032 | ADH2_SOLLC | 1, ., 1, ., 1, ., 1 | 0.5899 | 0.9973 | 0.9947 | N/A | no |
| Q0DWH1 | ADHX_ORYSJ | 1, ., 1, ., 1, ., 2, 8, 4 | 0.9144 | 0.9868 | 0.9816 | yes | no |
| Q8X5J4 | FRMA_ECO57 | 1, ., 1, ., 1, ., - | 0.6338 | 0.9630 | 0.9891 | N/A | no |
| P80572 | ADHX_PEA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.8756 | 0.9973 | 1.0 | N/A | no |
| O19053 | ADHX_RABIT | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6881 | 0.9788 | 0.9919 | yes | no |
| Q17335 | ADHX_CAEEL | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6220 | 0.9920 | 0.9791 | yes | no |
| Q3ZC42 | ADHX_BOVIN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6908 | 0.9788 | 0.9919 | yes | no |
| P46415 | ADHX_DROME | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6631 | 0.9868 | 0.9868 | yes | no |
| P11766 | ADHX_HUMAN | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6962 | 0.9788 | 0.9919 | yes | no |
| Q75ZX4 | ADH1_ORYSI | 1, ., 1, ., 1, ., 1 | 0.5989 | 1.0 | 1.0 | N/A | no |
| P05336 | ADH1_HORVU | 1, ., 1, ., 1, ., 1 | 0.5936 | 1.0 | 1.0 | N/A | no |
| P79896 | ADHX_SPAAU | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6933 | 0.9868 | 0.9946 | N/A | no |
| P32771 | FADH_YEAST | 1, ., 1, ., 1, ., - | 0.6036 | 0.9973 | 0.9792 | yes | no |
| O74540 | FADH2_SCHPO | 1, ., 1, ., 1, ., - | 0.6213 | 0.9868 | 0.9842 | yes | no |
| P12886 | ADH1_PEA | 1, ., 1, ., 1, ., 1 | 0.5767 | 0.9973 | 0.9947 | N/A | no |
| P13603 | ADH1_TRIRP | 1, ., 1, ., 1, ., 1 | 0.5793 | 0.9973 | 0.9947 | N/A | no |
| P17648 | ADH_FRAAN | 1, ., 1, ., 1, ., 1 | 0.5846 | 0.9973 | 0.9947 | N/A | no |
| P04707 | ADH2_MAIZE | 1, ., 1, ., 1, ., 1 | 0.5831 | 1.0 | 1.0 | N/A | no |
| P14219 | ADH1_PENAM | 1, ., 1, ., 1, ., 1 | 0.5936 | 1.0 | 1.0 | N/A | no |
| P28474 | ADHX_MOUSE | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6989 | 0.9788 | 0.9919 | yes | no |
| Q54TC2 | ADHX_DICDI | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6842 | 0.9920 | 0.9920 | yes | no |
| P81431 | ADHX_OCTVU | 1, ., 1, ., 1, ., 2, 8, 4 | 0.656 | 0.9868 | 0.9894 | N/A | no |
| P80360 | ADHX_MYXGL | 1, ., 1, ., 1, ., 2, 8, 4 | 0.6390 | 0.9841 | 0.9920 | N/A | no |
| P86884 | ADHX_SCYCA | 1, ., 1, ., 1, ., 2, 8, 4 | 0.68 | 0.9868 | 0.9946 | N/A | no |
| Q3Z550 | FRMA_SHISS | 1, ., 1, ., 1, ., - | 0.6338 | 0.9630 | 0.9891 | yes | no |
| A1A835 | FRMA_ECOK1 | 1, ., 1, ., 1, ., - | 0.6311 | 0.9630 | 0.9891 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.998 |
| 4th Layer | 1.1.1.284 | 0.993 |
| 4th Layer | 1.1.1.1 | 0.993 |
| 3rd Layer | 1.1.1.73 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | Sb04g037050.1 | hypothetical protein (381 aa) | |||||||||
(Sorghum bicolor) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Dha1 | SubName- Full=Aldehyde dehydrogenase; Flags- Fragment; (510 aa) | • | 0.901 | |||||||
 | Sb09g023060.1 | hypothetical protein (610 aa) | • | 0.899 | |||||||
 | Sb08g004840.1 | hypothetical protein (488 aa) | • | 0.899 | |||||||
 | Sb05g005470.1 | hypothetical protein (478 aa) | • | 0.899 | |||||||
 | Sb04g033420.1 | hypothetical protein (486 aa) | • | 0.899 | |||||||
 | Sb03g005240.1 | hypothetical protein (592 aa) | • | 0.899 | |||||||
 | Sb02g043900.1 | hypothetical protein (529 aa) | • | 0.899 | |||||||
 | Sb01g038360.1 | hypothetical protein (610 aa) | • | 0.899 | |||||||
 | Sb03g045400.1 | hypothetical protein (285 aa) | • | • | • | • | • | 0.745 | |||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 379 | |||
| cd08300 | 368 | cd08300, alcohol_DH_class_III, class III alcohol d | 0.0 | |
| cd08301 | 369 | cd08301, alcohol_DH_plants, Plant alcohol dehydrog | 0.0 | |
| TIGR02818 | 368 | TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat | 0.0 | |
| cd08277 | 365 | cd08277, liver_alcohol_DH_like, Liver alcohol dehy | 0.0 | |
| COG1062 | 366 | COG1062, AdhC, Zn-dependent alcohol dehydrogenases | 0.0 | |
| cd08299 | 373 | cd08299, alcohol_DH_class_I_II_IV, class I, II, IV | 0.0 | |
| PLN02740 | 381 | PLN02740, PLN02740, Alcohol dehydrogenase-like | 1e-177 | |
| cd05279 | 365 | cd05279, Zn_ADH1, Liver alcohol dehydrogenase and | 1e-177 | |
| PLN02827 | 378 | PLN02827, PLN02827, Alcohol dehydrogenase-like | 1e-162 | |
| cd08279 | 363 | cd08279, Zn_ADH_class_III, Class III alcohol dehyd | 1e-137 | |
| cd08281 | 371 | cd08281, liver_ADH_like1, Zinc-dependent alcohol d | 1e-101 | |
| cd08278 | 365 | cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro | 1e-100 | |
| TIGR03989 | 369 | TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa | 2e-95 | |
| cd08263 | 367 | cd08263, Zn_ADH10, Alcohol dehydrogenases of the M | 1e-72 | |
| TIGR03451 | 358 | TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi | 3e-71 | |
| COG1064 | 339 | COG1064, AdhP, Zn-dependent alcohol dehydrogenases | 1e-64 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 6e-61 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 4e-58 | |
| cd08231 | 361 | cd08231, MDR_TM0436_like, Hypothetical enzyme TM04 | 2e-56 | |
| cd08260 | 345 | cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD | 2e-54 | |
| cd05278 | 347 | cd05278, FDH_like, Formaldehyde dehydrogenases | 5e-53 | |
| cd08234 | 334 | cd08234, threonine_DH_like, L-threonine dehydrogen | 3e-49 | |
| cd08236 | 343 | cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog | 7e-49 | |
| cd08235 | 343 | cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas | 6e-48 | |
| cd08233 | 351 | cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio | 6e-48 | |
| cd08254 | 338 | cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e | 3e-47 | |
| cd08261 | 337 | cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD | 6e-46 | |
| cd05285 | 343 | cd05285, sorbitol_DH, Sorbitol dehydrogenase | 9e-46 | |
| cd08239 | 339 | cd08239, THR_DH_like, L-threonine dehydrogenase (T | 3e-44 | |
| cd08259 | 332 | cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD | 4e-44 | |
| cd08283 | 386 | cd08283, FDH_like_1, Glutathione-dependent formald | 5e-41 | |
| cd08245 | 330 | cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD | 5e-40 | |
| cd08297 | 341 | cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA | 1e-39 | |
| cd05284 | 340 | cd05284, arabinose_DH_like, D-arabinose dehydrogen | 7e-39 | |
| cd08284 | 344 | cd08284, FDH_like_2, Glutathione-dependent formald | 3e-38 | |
| cd05281 | 341 | cd05281, TDH, Threonine dehydrogenase | 4e-36 | |
| cd08266 | 342 | cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t | 1e-35 | |
| cd08240 | 350 | cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa | 2e-35 | |
| cd08285 | 351 | cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd | 5e-35 | |
| cd08286 | 345 | cd08286, FDH_like_ADH2, formaldehyde dehydrogenase | 6e-34 | |
| cd05283 | 337 | cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA | 4e-32 | |
| cd08232 | 339 | cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | 1e-31 | |
| cd08258 | 306 | cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD | 2e-30 | |
| cd08287 | 345 | cd08287, FDH_like_ADH3, formaldehyde dehydrogenase | 5e-30 | |
| PRK13771 | 334 | PRK13771, PRK13771, putative alcohol dehydrogenase | 9e-30 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 1e-27 | |
| cd08282 | 375 | cd08282, PFDH_like, Pseudomonas putida aldehyde-di | 1e-27 | |
| TIGR00692 | 340 | TIGR00692, tdh, L-threonine 3-dehydrogenase | 4e-27 | |
| cd08296 | 333 | cd08296, CAD_like, Cinnamyl alcohol dehydrogenases | 2e-26 | |
| cd08269 | 312 | cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD | 2e-26 | |
| pfam08240 | 108 | pfam08240, ADH_N, Alcohol dehydrogenase GroES-like | 3e-26 | |
| cd08298 | 329 | cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA | 3e-26 | |
| PRK05396 | 341 | PRK05396, tdh, L-threonine 3-dehydrogenase; Valida | 2e-25 | |
| pfam00107 | 131 | pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | 2e-25 | |
| cd08265 | 384 | cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD | 8e-24 | |
| cd08249 | 339 | cd08249, enoyl_reductase_like, enoyl_reductase_lik | 1e-23 | |
| cd08255 | 277 | cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro | 2e-23 | |
| PRK09422 | 338 | PRK09422, PRK09422, ethanol-active dehydrogenase/a | 3e-23 | |
| PRK10309 | 347 | PRK10309, PRK10309, galactitol-1-phosphate dehydro | 6e-22 | |
| TIGR03201 | 349 | TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1 | 7e-21 | |
| PLN02702 | 364 | PLN02702, PLN02702, L-idonate 5-dehydrogenase | 1e-20 | |
| cd05289 | 309 | cd05289, MDR_like_2, alcohol dehydrogenase and qui | 2e-20 | |
| cd08276 | 336 | cd08276, MDR7, Medium chain dehydrogenases/reducta | 5e-20 | |
| cd08241 | 323 | cd08241, QOR1, Quinone oxidoreductase (QOR) | 1e-19 | |
| PRK10083 | 339 | PRK10083, PRK10083, putative oxidoreductase; Provi | 2e-18 | |
| TIGR02819 | 393 | TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas | 3e-18 | |
| cd08256 | 350 | cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD | 4e-18 | |
| TIGR03366 | 280 | TIGR03366, HpnZ_proposed, putative phosphonate cat | 9e-18 | |
| cd05286 | 320 | cd05286, QOR2, Quinone oxidoreductase (QOR) | 3e-17 | |
| cd08262 | 341 | cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD | 3e-17 | |
| cd08243 | 320 | cd08243, quinone_oxidoreductase_like_1, Quinone ox | 5e-17 | |
| cd08253 | 325 | cd08253, zeta_crystallin, Zeta-crystallin with NAD | 3e-15 | |
| PLN02586 | 360 | PLN02586, PLN02586, probable cinnamyl alcohol dehy | 4e-15 | |
| cd08264 | 325 | cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t | 1e-14 | |
| cd08268 | 328 | cd08268, MDR2, Medium chain dehydrogenases/reducta | 7e-14 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 4e-13 | |
| PRK09880 | 343 | PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro | 2e-12 | |
| cd08271 | 325 | cd08271, MDR5, Medium chain dehydrogenases/reducta | 4e-12 | |
| cd08272 | 326 | cd08272, MDR6, Medium chain dehydrogenases/reducta | 1e-11 | |
| cd08242 | 319 | cd08242, MDR_like, Medium chain dehydrogenases/red | 1e-11 | |
| cd08230 | 355 | cd08230, glucose_DH, Glucose dehydrogenase | 4e-11 | |
| PLN02514 | 357 | PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | 6e-11 | |
| cd05282 | 323 | cd05282, ETR_like, 2-enoyl thioester reductase-lik | 2e-10 | |
| cd05276 | 323 | cd05276, p53_inducible_oxidoreductase, PIG3 p53-in | 7e-10 | |
| PLN02178 | 375 | PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | 1e-09 | |
| cd08292 | 324 | cd08292, ETR_like_2, 2-enoyl thioester reductase ( | 1e-09 | |
| cd08290 | 341 | cd08290, ETR, 2-enoyl thioester reductase (ETR) | 7e-09 | |
| PRK10754 | 327 | PRK10754, PRK10754, quinone oxidoreductase, NADPH- | 4e-08 | |
| cd05195 | 293 | cd05195, enoyl_red, enoyl reductase of polyketide | 1e-07 | |
| cd08275 | 337 | cd08275, MDR3, Medium chain dehydrogenases/reducta | 1e-07 | |
| PTZ00354 | 334 | PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi | 2e-07 | |
| COG2130 | 340 | COG2130, COG2130, Putative NADP-dependent oxidored | 2e-07 | |
| cd08252 | 336 | cd08252, AL_MDR, Arginate lyase and other MDR fami | 5e-07 | |
| TIGR02822 | 329 | TIGR02822, adh_fam_2, zinc-binding alcohol dehydro | 6e-07 | |
| cd08250 | 329 | cd08250, Mgc45594_like, Mgc45594 gene product and | 7e-07 | |
| cd05288 | 329 | cd05288, PGDH, Prostaglandin dehydrogenases | 2e-06 | |
| cd08251 | 303 | cd08251, polyketide_synthase, polyketide synthase | 5e-06 | |
| cd08246 | 393 | cd08246, crotonyl_coA_red, crotonyl-CoA reductase | 9e-06 | |
| TIGR01751 | 398 | TIGR01751, crot-CoA-red, crotonyl-CoA reductase | 2e-05 | |
| cd08273 | 331 | cd08273, MDR8, Medium chain dehydrogenases/reducta | 4e-05 | |
| smart00829 | 287 | smart00829, PKS_ER, Enoylreductase | 8e-05 | |
| TIGR02817 | 336 | TIGR02817, adh_fam_1, zinc-binding alcohol dehydro | 1e-04 | |
| cd08247 | 352 | cd08247, AST1_like, AST1 is a cytoplasmic protein | 2e-04 | |
| TIGR02824 | 325 | TIGR02824, quinone_pig3, putative NAD(P)H quinone | 3e-04 | |
| cd08244 | 324 | cd08244, MDR_enoyl_red, Possible enoyl reductase | 5e-04 | |
| cd01075 | 200 | cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d | 5e-04 | |
| pfam02254 | 116 | pfam02254, TrkA_N, TrkA-N domain | 5e-04 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 9e-04 | |
| TIGR01202 | 308 | TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter | 0.002 | |
| cd08274 | 350 | cd08274, MDR9, Medium chain dehydrogenases/reducta | 0.002 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 0.003 | |
| cd08291 | 324 | cd08291, ETR_like_1, 2-enoyl thioester reductase ( | 0.003 |
| >gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 782 bits (2022), Expect = 0.0
Identities = 289/369 (78%), Positives = 318/369 (86%), Gaps = 1/369 (0%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
ITCKAAVAWE KPL IE+V+VAPP+AGEVRIKIL T +CHTDAYT SG DPEGLFP IL
Sbjct: 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHE AGIVESVGEGVT V+PGDHVIP Y EC ECKFCKSGKTNLC K+R G G +M
Sbjct: 61 GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKG-LMP 119
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
D SRFS GKPIYHFMGTSTFS+YTVV ++SVAKI+P+APLDKVCLLGCGV TG GAV
Sbjct: 120 DGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVL 179
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
NTAKVEPGS VAVFGLG VGLAV +GAKAAGASR+IGIDI+P KF+ AK FG T+ VNPK
Sbjct: 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK 239
Query: 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 307
DHDKPIQQVLV++TDGGVDY+FECIGNV VMRAALE CHKGWGTSVI+GVAA+GQEISTR
Sbjct: 240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTR 299
Query: 308 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
PFQLVTGRVWKGTAFGG+KSRSQVP LV+ YMK +IKVDE++TH M L EINEAF MH
Sbjct: 300 PFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHA 359
Query: 368 GDCLRCVLK 376
G +R V+K
Sbjct: 360 GKSIRTVVK 368
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368 |
| >gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 649 bits (1676), Expect = 0.0
Identities = 239/368 (64%), Positives = 294/368 (79%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
ITCKAAVAWE KPLVIE+V+VAPPQA EVRIKIL T+LCHTD Y W K LFP IL
Sbjct: 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHEAAGIVESVGEGVT+++PGDHV+P + EC+EC+ CKS K+N+C +R T GVM+N
Sbjct: 61 GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
D KSRFSINGKPIYHF+GTSTFS+YTVVH VAKI+P+APLDKVCLL CGV TGLGA W
Sbjct: 121 DGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAW 180
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
N AKV+ GS VA+FGLG VGLAVAEGA+ GASR+IG+D++P KF++AK FGVTEFVNPK
Sbjct: 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240
Query: 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 307
DHDKP+Q+V+ ++T GGVDYSFEC GN+ M +A EC H GWG +V++GV ST
Sbjct: 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTH 300
Query: 308 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
P L+ GR KGT FGG+K ++ +P LV+KYMKKE+++++++TH + EIN+AF +
Sbjct: 301 PMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLK 360
Query: 368 GDCLRCVL 375
G+CLRC+L
Sbjct: 361 GECLRCIL 368
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369 |
| >gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 243/367 (66%), Positives = 297/367 (80%), Gaps = 1/367 (0%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
+AAVAW +PL IE+V V PQ GEV ++I+ T +CHTDA+T SG DPEG+FP ILGHE
Sbjct: 3 RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
AGIVE+VGEGVT V+ GDHVIP Y AEC ECKFC SGKTNLC VR G G+M D
Sbjct: 63 GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGT 121
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
SRFS +G+PIYH+MG STFS+YTVV ++S+AKI+P APL++VCLLGCGV TG+GAV NTA
Sbjct: 122 SRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181
Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250
KVE G VAVFGLG +GL+V +GA+ A ASR+I IDI+P KF+ AK G T+ VNP D+D
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYD 241
Query: 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ 310
KPIQ+V+V++TDGGVDYSFECIGNV+VMRAALECCHKGWG S+I+GVA +GQEISTRPFQ
Sbjct: 242 KPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQ 301
Query: 311 LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC 370
LVTGRVW+G+AFGG K R+++P +V++YMK EI +D++VTH M L +INEAF MH G
Sbjct: 302 LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS 361
Query: 371 LRCVLKM 377
+R V+
Sbjct: 362 IRTVIHY 368
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368 |
| >gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 572 bits (1476), Expect = 0.0
Identities = 229/369 (62%), Positives = 273/369 (73%), Gaps = 4/369 (1%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
I CKAAVAWE KPLVIE+++VAPP+A EVRIK+L T++CHTD G LFP IL
Sbjct: 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHE AGIVESVGEGVT ++PGD VIP + +C EC C+SGKTNLC K R A +G +M
Sbjct: 60 GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYR-ANESG-LMP 117
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
D SRF+ GK IYHF+GTSTFSQYTVV + VAKIDP APL+ VCLLGCG TG GA W
Sbjct: 118 DGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
NTAKVEPGS VAVFGLG VGL+ GAK AGASR+IG+DI+ KF++AK FG T+F+NPK
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237
Query: 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 307
D DKP+ +V+ ++T GGVDYSFEC GN +M ALE GWG SV+VGV G E+S R
Sbjct: 238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPP-GAELSIR 296
Query: 308 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
PFQL+ GR WKG+ FGGFKSRS VP LV KYM K+ +DE +TH + EIN+ F M
Sbjct: 297 PFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKS 356
Query: 368 GDCLRCVLK 376
G+C+R V+
Sbjct: 357 GECIRTVIT 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 554 bits (1431), Expect = 0.0
Identities = 227/370 (61%), Positives = 280/370 (75%), Gaps = 4/370 (1%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ +AAVA E KPL IE+V + PP+AGEV ++I T +CHTDA+T SG DPEG FP +L
Sbjct: 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVL 59
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHE AGIVE+VGEGVT V+PGDHVI + EC +CKFC SGK NLC +R G G M
Sbjct: 60 GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP- 118
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
D +R S NG P+YH++G STF++YTVVH++S+ KIDP APL+K CLLGCGV TG+GAV
Sbjct: 119 DGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
NTAKVEPG VAVFGLG VGLA +GAKAAGA R+I +DI+P+K + AK FG T FVNPK
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238
Query: 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 307
+ D + + +V+LTDGG DY+FEC+GNV VMR ALE H+ GTSVI+GVA +GQEISTR
Sbjct: 239 EVD-DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTR 296
Query: 308 PFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
PFQLVTGRVWKG+AFGG + RS +P LVD YM ++ +D VTH + L +INEAF MH
Sbjct: 297 PFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHE 356
Query: 368 GDCLRCVLKM 377
G +R V++
Sbjct: 357 GKSIRSVIRF 366
|
Length = 366 |
| >gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 546 bits (1408), Expect = 0.0
Identities = 211/373 (56%), Positives = 265/373 (71%), Gaps = 2/373 (0%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T G+VI CKAAV WEP KP IE+++VAPP+A EVRIKI+ T +C +D + SGK
Sbjct: 1 TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TP 59
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FP ILGHEAAGIVESVGEGVT V+PGD VIP + +C +C+ C + ++NLC K
Sbjct: 60 FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
G+M D SRF+ GKPI+HF+GTSTFS+YTVV +++VAKID APL+KVCL+GCG TG
Sbjct: 120 GLMQ-DGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
GA NTAKV PGS AVFGLG VGL+ G KAAGASR+I +DI+ KF +AK G TE
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238
Query: 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
+NP+D+ KPIQ+VL ++TDGGVD+SFE IG + M+AAL CH+G+G SVIVGV S Q
Sbjct: 239 CINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQ 298
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
+S P L+TGR WKG FGG+KS+ VP LV YM K+ +D +TH + +INE F
Sbjct: 299 NLSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGF 358
Query: 363 RYMHGGDCLRCVL 375
+ G +R VL
Sbjct: 359 DLLRSGKSIRTVL 371
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373 |
| >gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 496 bits (1279), Expect = e-177
Identities = 202/380 (53%), Positives = 275/380 (72%), Gaps = 3/380 (0%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
T+G+VITCKAAVAW P +PLV+E+++V PPQ EVRIKIL+T++CHTD W G+ +
Sbjct: 2 SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA 61
Query: 60 EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
+ +P ILGHEAAGIVESVGEGV +++ GDHVIP + EC +C++CK KTNLC R
Sbjct: 62 QRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVD 121
Query: 120 TGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC 177
VM+ND K+RFS +G+PIYHF+ TSTF++YTV+ V KIDP APL K+ LL C
Sbjct: 122 PFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237
GV TG+GA WNTA V+ GS VA+FGLG VGLAVAEGA+A GAS++IG+DI+P+KF++ K
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241
Query: 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297
G+T+F+NPKD DKP+ + + ++T GGVDYSFEC GNV V+R A H GWG +V++G+
Sbjct: 242 MGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGI 301
Query: 298 AASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 357
+ + + P +L GR G+ FG FK +SQ+P L + M+ + +D ++TH + +
Sbjct: 302 HPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEK 361
Query: 358 INEAFRYMHGGDCLRCVLKM 377
INEAF+ + G LRC+L +
Sbjct: 362 INEAFQLLEDGKALRCLLHL 381
|
Length = 381 |
| >gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 495 bits (1277), Expect = e-177
Identities = 205/367 (55%), Positives = 262/367 (71%), Gaps = 2/367 (0%)
Query: 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
CKAAV WE KPL IE+++VAPP+AGEVRIK++ T +CHTD + GK P P ILGH
Sbjct: 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGH 59
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
E AGIVES+G GVT ++PGD VIP + +C +CK C + + NLC K RG G G+M D
Sbjct: 60 EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
SRF+ GKPI+HF+GTSTF++YTVV ++S+AKIDP APL+KVCL+GCG TG GA NT
Sbjct: 119 TSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNT 178
Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
AKV PGS AVFGLG VGL+V G KAAGASR+I +DI+ KF++AK G TE +NP+D
Sbjct: 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQ 238
Query: 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309
DKPI +VL ++TDGGVDY+FE IG+ ++ AL+ G GTSV+VGV SG E + P
Sbjct: 239 DKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPN 298
Query: 310 QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
L+TGR KGT FGG+KS+ VP LV Y +K+ +DE +TH + EIN+ F M G+
Sbjct: 299 DLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGE 358
Query: 370 CLRCVLK 376
+R +L
Sbjct: 359 SIRTILT 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 460 bits (1184), Expect = e-162
Identities = 201/372 (54%), Positives = 267/372 (71%), Gaps = 4/372 (1%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
VITC+AAVAW + LV+E+V+V+PPQ E+RIK++ T+LC +D W + LFP
Sbjct: 9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPR 65
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
I GHEA+GIVES+GEGVTE + GDHV+ + EC C+ C SGK+N+C +V G GVM
Sbjct: 66 IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMC-QVLGLERKGVM 124
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
+D+K+RFSI GKP+YH+ S+FS+YTVVH K+DP APL K+CLL CGV GLGA
Sbjct: 125 HSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGA 184
Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
WN A V GS V +FGLGTVGL+VA+GAK GAS++IG+DI+P+K ++AK FGVT+F+N
Sbjct: 185 AWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFIN 244
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
P D +PIQQV+ +T GG DYSFEC+G+ + AL+ C GWG +V +GV + E+S
Sbjct: 245 PNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVS 304
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
++GR KG+ FGG+K +S +P LVDKYM KEI +DE++THN++ EIN+AF M
Sbjct: 305 AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELM 364
Query: 366 HGGDCLRCVLKM 377
G CLRCV+ M
Sbjct: 365 REGKCLRCVIHM 376
|
Length = 378 |
| >gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 394 bits (1016), Expect = e-137
Identities = 163/367 (44%), Positives = 223/367 (60%), Gaps = 8/367 (2%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
+AAV E KPL IE+V++ P GEV ++I LCH+D + +G P L P +LGHE
Sbjct: 2 RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPL-PAVLGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
AG+VE VG GVT V+PGDHV+ + C C++C G+ NLC GA G + D
Sbjct: 61 GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCD--LGAGILGGQLPDGT 118
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
RF+ +G+P+ G TF++YTVV + SV KID PLD+ LLGCGV TG+GAV NTA
Sbjct: 119 RRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178
Query: 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250
+V PG VAV G G VGL +GA+ AGASR+I +D P+K + A+ FG T VN + D
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDD 238
Query: 251 KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309
++ V DLTDG G DY+FE +G + +R AL KG GT+V+VG+ G+ +S
Sbjct: 239 -AVEAV-RDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPAL 295
Query: 310 QLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 368
+L + + +G+ +G R +P L+D Y +K+DE VT +L EINEAF M G
Sbjct: 296 ELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAG 355
Query: 369 DCLRCVL 375
+ R V+
Sbjct: 356 ENARGVI 362
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363 |
| >gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = e-101
Identities = 149/358 (41%), Positives = 204/358 (56%), Gaps = 6/358 (1%)
Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG 79
+PLVIE+V++ PP GEV +KI LCH+D +G P L P LGHEAAG+V VG
Sbjct: 19 RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL-PMALGHEAAGVVVEVG 77
Query: 80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
EGVT+++ GDHV+ + C C+ C G+ LC A GAG +++ + R + G
Sbjct: 78 EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGR-RLRLRGGE 136
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA 199
I H +G S F++Y VV SV KID PL+ L GC V TG+GAV NTA V PG VA
Sbjct: 137 INHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVA 196
Query: 200 VFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 259
V GLG VGL+ GA AAGAS+V+ +D++ K A+ G T VN D + ++QV +
Sbjct: 197 VVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPN-AVEQV-RE 254
Query: 260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWK 318
LT GGVDY+FE G+V + A E +G GT+V G+ +S LV R K
Sbjct: 255 LTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLK 313
Query: 319 GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376
G+ G R +P + Y+ + VD+ +TH + L EINE F + G+ +R V+
Sbjct: 314 GSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL 371
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371 |
| >gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = e-100
Identities = 133/371 (35%), Positives = 198/371 (53%), Gaps = 8/371 (2%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ AAV EP P V+EDV++ P+ EV ++I+ T +CHTD G P P +L
Sbjct: 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVL 59
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHE AG+VE+VG VT ++PGDHV+ + A C EC C SG C +G +
Sbjct: 60 GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPD 118
Query: 128 DRKSRFSINGKPIY-HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+G P++ HF G S+F+ Y VVH+ +V K+D PL+ + LGCG+ TG GAV
Sbjct: 119 GSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAV 178
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
N K PGS +AVFG G VGLA AK AG + +I +DI + + AK G T +NP
Sbjct: 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP 238
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
K+ D + + ++T GGVDY+ + G +V+ A++ GT +VG G E++
Sbjct: 239 KEED--LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTL 295
Query: 307 RPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
L+ G+ +G G + +P L++ Y + + D+ VT +IN+A
Sbjct: 296 DVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIADS 354
Query: 366 HGGDCLRCVLK 376
G ++ VL+
Sbjct: 355 ESGKVIKPVLR 365
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365 |
| >gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 2e-95
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 12/372 (3%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KAAV W P +P +E++++ P+AGEV +K++ + LCH+D + +G P +P + GHE
Sbjct: 3 KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHE 62
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDR 129
AG+V VG GVT V+PGDHV+ + C C++C +G NLC GA G ++D
Sbjct: 63 GAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCD--LGAALLTGSQISDG 120
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
RF +G+ + TFS+YTVV + SV KID PLDK CL+GCGVPTG G+ N
Sbjct: 121 TYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI 180
Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
A V PG V V G+G VG+ +GA AGA +VI +D K ++A FG T
Sbjct: 181 ADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFA--SM 238
Query: 250 DKPIQQVLVDLTDG-GVDYSFECIGNV--SVMRAALECCHKGWGTSVIVGVAASGQE-IS 305
++ +Q V +LT+G G D + +G V + AL KG G V+ G+ +
Sbjct: 239 EEAVQLVR-ELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMADVDVK 296
Query: 306 TRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 364
F+L + +GT FGG R+ +P L++ Y ++K+DE +T TL +INE ++
Sbjct: 297 VNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEGYQD 356
Query: 365 MHGGDCLRCVLK 376
M G +R V+
Sbjct: 357 MLDGKNIRGVIV 368
|
This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369 |
| >gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 1e-72
Identities = 115/363 (31%), Positives = 175/363 (48%), Gaps = 9/363 (2%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KAAV PN PL IE++ V P+ GE+ I++ +CH+D + G+ P P +LGHE
Sbjct: 2 KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP-FPPPFVLGHE 60
Query: 71 AAGIVESVGEGVT---EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
+G V VG V + GD V+ + C +C++C GK NLC +
Sbjct: 61 ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120
Query: 128 DRKSR-FSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
D +R F ++G P+Y + ++Y VV ++A + + +LGC T GA+
Sbjct: 121 DGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
+ A V PG VAV G+G VG + + AKA GAS +I +D+ +K +AK G T VN
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA 239
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
D + + GVD E +G + AL+ G G +V+VG+A G
Sbjct: 240 AKED-AVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEI 297
Query: 307 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 366
+LV + ++G + R +P LV ++ + VTH L EINEA+ +
Sbjct: 298 PITRLVRRGIKIIGSYGA-RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLR 356
Query: 367 GGD 369
G
Sbjct: 357 KGL 359
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367 |
| >gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 3e-71
Identities = 137/371 (36%), Positives = 190/371 (51%), Gaps = 19/371 (5%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCIL 67
T + +A P+ +E + V P GEV + I +CHTD Y G + E FP +L
Sbjct: 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLL 58
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHEAAG+VE+VGEGVT+V PGD+V+ ++A C +C+ CK G+ C AT + +
Sbjct: 59 GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
G + +G F++ T+VH K+DP A LLGCGV GLGA
Sbjct: 119 ---------GTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV 169
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
NT V+ G VAV G G VG A GA AGAS++I +DID +K + A+ FG T VN
Sbjct: 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS 229
Query: 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
D P++ + LT G G D + +G + A GT V+VGV +
Sbjct: 230 GTD-PVEAIR-ALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLEL 286
Query: 307 RPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 364
P V GR K + +G P LVD Y++ + +D +VT + L ++ EAF
Sbjct: 287 -PLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDK 345
Query: 365 MHGGDCLRCVL 375
MH GD LR V+
Sbjct: 346 MHAGDVLRSVV 356
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358 |
| >gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 208 bits (533), Expect = 1e-64
Identities = 114/373 (30%), Positives = 163/373 (43%), Gaps = 40/373 (10%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+T KAAV + +PL IE+V V P GEV IK+ +CHTD + G P P I
Sbjct: 2 MTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIP 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G V VGEGVT ++ GD V + C EC++C+SG NLC +
Sbjct: 62 GHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG------ 115
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
++ +G +++Y VV V KI L + L C T A+
Sbjct: 116 ------YTTDG----------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
A V+PG VAV G G +G + AKA GA VI I +K + AK G +N
Sbjct: 160 -KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINS 217
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
D ++ V D + +G ++ +L+ +G GT V+VG+ G
Sbjct: 218 SD-SDALEAV-----KEIADAIIDTVGPATL-EPSLKALRRG-GTLVLVGLPGGGPIPLL 269
Query: 307 RPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
F L+ G+ G R+ + +D E K+ + + L EINEA+ M
Sbjct: 270 PAFLLILKEISIVGSLVGT---RADLEEALD--FAAEGKIKPEILETIPLDEINEAYERM 324
Query: 366 HGGDCL-RCVLKM 377
G R V+ M
Sbjct: 325 EKGKVRGRAVIDM 337
|
Length = 339 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 6e-61
Identities = 81/290 (27%), Positives = 115/290 (39%), Gaps = 31/290 (10%)
Query: 36 EVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
EV +++ LC TD + G P P ILGHE AG+V VG GVT V+ GD V+
Sbjct: 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60
Query: 95 YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
C C+ C+ I F++Y V
Sbjct: 61 PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94
Query: 155 VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGA 214
V ++ + L++ LL + T A+ ++PG V V G G VGL A+ A
Sbjct: 95 VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154
Query: 215 KAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274
KAAGA RVI D +K + AK G ++ K+ D + L GG D + +G
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAKELGADHVIDYKEEDLE--EELRLTGGGGADVVIDAVGG 211
Query: 275 VSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 324
+ AL G G V+VG + G + L G+ G
Sbjct: 212 PETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT 260
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 4e-58
Identities = 102/373 (27%), Positives = 151/373 (40%), Gaps = 30/373 (8%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-CILGH 69
KAAV + + +E+ P G+V I++ T +C +D + + G +P ILGH
Sbjct: 2 KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
E G V VG V + GD V+ C C++C++G+ NLC AG+
Sbjct: 62 EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-- 118
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
I+G F++Y V P ++ L + T
Sbjct: 119 -----IDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163
Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
A V PG V V G G +GL AK GAS VI +D P++ + AK G + V
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223
Query: 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309
D ++L G D E +G+ + ALE G GT V+VGV G E P
Sbjct: 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGV--YGGEDIPLPA 280
Query: 310 QLVTGRVWKGTAFGG---FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM- 365
LV V K G R +D +I ++ +TH + L + EA+
Sbjct: 281 GLV---VSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFA 337
Query: 366 -HGGDCLRCVLKM 377
+ ++ VLK
Sbjct: 338 DRKEEAIKVVLKP 350
|
Length = 350 |
| >gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-56
Identities = 100/380 (26%), Positives = 158/380 (41%), Gaps = 33/380 (8%)
Query: 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
+AAV P KPL I +V + + G V +++ +C +D +T +G+ P P ILGH
Sbjct: 1 ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60
Query: 70 EAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
E G V ++G GVT ++ GD V A C C C G C +
Sbjct: 61 EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK----- 115
Query: 124 VMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
+ H G ++++ + ++ ++ P + C + T
Sbjct: 116 ---------YGHEASCDDPHLSG--GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALAT 164
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
L A+ V G V V G G +GL AK AGA RVI ID P++ + A+ FG
Sbjct: 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD 224
Query: 242 EFVNPKDHDKPIQQVLV-DLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
++ + P ++ +V D+T G G D E G+ + + LE +G GT V+VG A
Sbjct: 225 ATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVA 283
Query: 300 SGQEISTRPFQLVTGRVW---KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 356
+ P ++V R G + +++ + E VTH L
Sbjct: 284 PAGTVPLDPERIV--RKNLTIIGVHNYDPSHLYRAVRFLERT-QDRFPFAELVTHRYPLE 340
Query: 357 EINEAFRYMHGGDCLRCVLK 376
+INEA G L+ V+
Sbjct: 341 DINEALELAESGTALKVVID 360
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361 |
| >gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-54
Identities = 91/307 (29%), Positives = 134/307 (43%), Gaps = 27/307 (8%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
+AAV E +PL I +V P V +++ +C +D + W G DP+ P + GHE
Sbjct: 2 RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
AG+V VGE V+ + GD V + C C +C++G +N+C
Sbjct: 62 FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQV------------- 108
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
F +F++Y V DV++ ++ LGC T A+ +
Sbjct: 109 ---------QPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159
Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248
A+V+PG VAV G G VGL+ A A GA RVI +DID K + A+ G VN +
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE 218
Query: 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP 308
+ V DLT GG S + +G R ++ K G V VG+ + P
Sbjct: 219 VEDVAAAV-RDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALP 276
Query: 309 FQLVTGR 315
V R
Sbjct: 277 MDRVVAR 283
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345 |
| >gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 5e-53
Identities = 108/377 (28%), Positives = 164/377 (43%), Gaps = 41/377 (10%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA V P K + E + +++ T++C +D + + G P ILGHE
Sbjct: 2 KALVYLGPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
G V VG V ++PGD V C C+FC+ G C
Sbjct: 62 FVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCE---------------- 105
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGL-GA 185
NG + Q V D+++AKI P + +L +PTG GA
Sbjct: 106 -----NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA 160
Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
A ++PGS VAV G G VGL GA+ GA+R+I +D +P++ D AK G T+ +N
Sbjct: 161 E--LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIIN 218
Query: 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
PK+ ++Q+L +LT G GVD E +G A++ G GT VGV +
Sbjct: 219 PKN-GDIVEQIL-ELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPL 275
Query: 305 STRPFQLVTGRVWKGTAF--GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
G K F G R+++P L+D + +I + +TH L +I +A+
Sbjct: 276 P--LLGEWFG---KNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAY 330
Query: 363 RYMHGG--DCLRCVLKM 377
R C++ V++
Sbjct: 331 RLFDNKPDGCIKVVIRP 347
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347 |
| >gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-49
Identities = 114/378 (30%), Positives = 164/378 (43%), Gaps = 57/378 (15%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA V +E L +E+V V P EV IK+ +C TD + + G+ P + GHE
Sbjct: 2 KALV-YEGPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHE 59
Query: 71 AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
AG+V +VG VT + GD V I C EC +C+ G+ NLC + T GV
Sbjct: 60 FAGVVVAVGSKVTGFKVGDRVAVDPNIYCG-----ECFYCRRGRPNLCENL---TAVGVT 111
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTG 182
N G F++Y VV V KI ++ L L C
Sbjct: 112 RN--------GG-----------FAEYVVVPAKQVYKIPDNLSFEEAALAEPLSC----- 147
Query: 183 LGAVW--NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
AV + ++PG V VFG G +GL +A+ K GASRV + + +K + AK G
Sbjct: 148 --AVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA 205
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TE V+P D Q+ + G D E G + A+E +G GT ++ GV A
Sbjct: 206 TETVDPSREDPEAQK---EDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAP 261
Query: 301 GQEISTRPFQLVTGRVWKG--TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 358
+S PF +++ T G F + P + +I V V+H + L E+
Sbjct: 262 DARVSISPF-----EIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPLEEV 316
Query: 359 NEAFRYMHGGDCLRCVLK 376
EA M G L+ V+
Sbjct: 317 PEALEGMRSGGALKVVVV 334
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334 |
| >gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 7e-49
Identities = 101/374 (27%), Positives = 160/374 (42%), Gaps = 55/374 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA V P L ED+ P GEV +K+ +C +D + G P +LGHE
Sbjct: 2 KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYH-PPLVLGHE 59
Query: 71 AAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
+G VE VG GV ++ GD V +PC +C++CK G+ +LC
Sbjct: 60 FSGTVEEVGSGVDDLAVGDRVAVNPLLPCG-----KCEYCKKGEYSLCSN---------- 104
Query: 126 MNDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP-- 180
Y ++G+ F++Y V ++ KI ++ ++ P
Sbjct: 105 ---------------YDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIE---PAA 146
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
L AV A + G V V G GT+GL + K GA RVI +DID +K A+ G
Sbjct: 147 VALHAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA 205
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
+ +NPK+ D + + +LT+G G D E G+ + + AL G G V+VG+
Sbjct: 206 DDTINPKEED---VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPY 261
Query: 300 SGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPW--LVDKYMKKEIKVDEYVTHNMTL 355
+S F+ + + +G+ W +D +IKV+ +TH + L
Sbjct: 262 GDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPL 321
Query: 356 GEINEAFRYMHGGD 369
+ AF + +
Sbjct: 322 EDGPAAFERLADRE 335
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343 |
| >gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 6e-48
Identities = 103/383 (26%), Positives = 156/383 (40%), Gaps = 58/383 (15%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KAAV PN + +E+V V P GEV +K+ +C TD G + P ILGHE
Sbjct: 2 KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60
Query: 71 AAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
AG + VG+GVT + GD +PC EC +C G N+C +
Sbjct: 61 IAGEIVEVGDGVTGFKVGDRVFVAPHVPCG-----ECHYCLRGNENMCPNYKKFG----- 110
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA-----KIDPQAPLDKVCL---LGC 177
+ G F++Y V +V K+ ++ L L C
Sbjct: 111 ---------------NLYDGG--FAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLAC 153
Query: 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237
+ A ++PG V V G G +GL A AKA+GA +VI D++ + + AK
Sbjct: 154 CI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK 208
Query: 238 FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296
G ++ + D +++V +LTDG G D G+ ALE KG G + G
Sbjct: 209 LGADYTIDAAEED-LVEKVR-ELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFG 265
Query: 297 VAASGQEISTRPFQLVTGRVWKG--TAFGGFK-SRSQVPWLVDKYMKKEIKVDEYVTHNM 353
G ++ + + T G + S ++ +I V + +TH
Sbjct: 266 GLPKGSTVN-----IDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRF 320
Query: 354 TLGEINEAFRYMHGGDCLRCVLK 376
L +I EAF G L+ V+
Sbjct: 321 PLEDIEEAFELAADGKSLKIVIT 343
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343 |
| >gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 6e-48
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 51/327 (15%)
Query: 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD--AYTWSG-----KDPEGL--- 62
A + K + +E+V P + GEV+IK+ + +C +D Y G +
Sbjct: 3 AARYHGRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYL-DGPIFIPTEGHPHLTG 61
Query: 63 --FPCILGHEAAGIVESVGEGVTEVQPGDHVI--PCYQAECRECKFCKSGKTNLCGKVRG 118
P LGHE +G+V VG GVT + GD V+ P + C C CK G NLC + G
Sbjct: 62 ETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIK--CGTCGACKRGLYNLCDSL-G 118
Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
G G G F++Y VV V K+ PL++ L+
Sbjct: 119 FIGLGGG----------GG----------GFAEYVVVPAYHVHKLPDNVPLEEAALVE-- 156
Query: 179 VPT--GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
P AV + +PG V G G +GL KAAGAS++I + + + A+
Sbjct: 157 -PLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214
Query: 237 NFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295
G T ++P + D + + LT G GVD SF+C G + + A++ GT+V V
Sbjct: 215 ELGATIVLDPTEVD--VVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNV 271
Query: 296 GVAASGQEISTRPFQLV-TGRVWKGTA 321
+ + IS P LV + G+
Sbjct: 272 AIW--EKPISFNPNDLVLKEKTLTGSI 296
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351 |
| >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-47
Identities = 103/350 (29%), Positives = 147/350 (42%), Gaps = 34/350 (9%)
Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESV 78
LV+E+V V P GEV +K+ +CH+D + G P P LGHE AG V V
Sbjct: 12 GLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV 71
Query: 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
G GVT + GD V C C C+ G+ NLC +N I+G
Sbjct: 72 GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG- 118
Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198
F++Y VV ++ + P + + V T AV +V+PG V
Sbjct: 119 ---------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETV 169
Query: 199 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 258
V GLG +GL + AKA GA VI +DI +K + AK G E +N D D P +
Sbjct: 170 LVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAA 227
Query: 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWK 318
L GG D F+ +G A + G G V+VG+ + L+ +
Sbjct: 228 GL-GGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDL--SDLIARELRI 283
Query: 319 GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 368
+FGG + +P ++D K ++ L EI E +H G
Sbjct: 284 IGSFGG--TPEDLPEVLDLIAKGKLDP---QVETRPLDEIPEVLERLHKG 328
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 |
| >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 6e-46
Identities = 106/361 (29%), Positives = 161/361 (44%), Gaps = 51/361 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA V +P + L + D+ P AGEV +++ +C +D + + G++P +P ILGHE
Sbjct: 2 KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
+G V VGEGV ++ GD V P C EC C+ G+ N C ++ V+
Sbjct: 61 LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQ------VLGVH 112
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VW 187
R +G F++Y VV + LD+ L+ P +GA
Sbjct: 113 R------DG----------GFAEYIVV-PADALLVPEGLSLDQAALVE---PLAIGAHAV 152
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
A V G V V G G +GL V + AKA GA RVI +DID ++ + A+ G + +N
Sbjct: 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVG 211
Query: 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE-CCHKGWGTSVIVGVAASGQEIS 305
D D + L +LTDG G D + GN + M A+E H G V+VG++
Sbjct: 212 DED--VAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG--GRVVLVGLSKGPVTFP 267
Query: 306 TRPFQLVTGRVWKGTAFGGFKSRSQVPW----LVDKYMKKEIKVDEYVTHNMTLGEINEA 361
F K G SR+ ++D ++ + +TH ++ EA
Sbjct: 268 DPEF------HKKELTILG--SRNATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEA 319
Query: 362 F 362
F
Sbjct: 320 F 320
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 9e-46
Identities = 116/389 (29%), Positives = 168/389 (43%), Gaps = 87/389 (22%)
Query: 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLF----PCI 66
AAV P L +E+ + P GEV +++ +C +D + + G+ G F P +
Sbjct: 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRI--GDFVVKEPMV 57
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LGHE+AG V +VG GVT ++ GD V +PC R C+FCKSG+ NLC +R
Sbjct: 58 LGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPC-----RTCEFCKSGRYNLCPDMR---- 108
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHD----------VSV---AKID 164
F T T +Y V H VS+ A ++
Sbjct: 109 ---------------------FAATPPVDGTLCRY-VNHPADFCHKLPDNVSLEEGALVE 146
Query: 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224
P + V + C A V PG V VFG G +GL A AKA GA++V+
Sbjct: 147 PLS----VGVHAC----------RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVV 192
Query: 225 IDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDLTDG-GVDYSFECIGNVSVMRAAL 282
DIDP + + AK G T VN + D P + + +L G G D EC G S ++ A+
Sbjct: 193 TDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAI 252
Query: 283 ECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMK 340
G GT V+VG+ G+ T P + R +G F+ + P ++
Sbjct: 253 YATRPG-GTVVLVGM---GKPEVTLPLSAASLREIDIRGV----FRYANTYPTAIELLAS 304
Query: 341 KEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
++ V +TH L + EAF G
Sbjct: 305 GKVDVKPLITHRFPLEDAVEAFETAAKGK 333
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343 |
| >gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-44
Identities = 91/364 (25%), Positives = 148/364 (40%), Gaps = 42/364 (11%)
Query: 19 NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPEGLFPCILGHEAAGIVES 77
++ + + + V P GEV +++ + LC +D + + G I GHE AG+V +
Sbjct: 9 DRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVA 68
Query: 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
VG GVT + GD V+ + C C+ C+ G LC +
Sbjct: 69 VGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLC---------------------TSK 107
Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
+ Y + ++Y +V + ++ + LL CG+ T A+ V
Sbjct: 108 RAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDT 166
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 257
V V G G VGL A+A GA VIG+D P++ + AK G +N D Q +
Sbjct: 167 VLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD---VQEI 223
Query: 258 VDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS-----GQEISTRPFQL 311
+LT G G D + EC GN + R ALE WG V+VG ++ + L
Sbjct: 224 RELTSGAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIEVSNDLIRKQRTL 282
Query: 312 VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL 371
+ + + + + +++VD VTH L + EA+ G+
Sbjct: 283 IGSWY---FSVPDMEE------CAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESG 333
Query: 372 RCVL 375
+ V
Sbjct: 334 KVVF 337
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 4e-44
Identities = 115/370 (31%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KAA+ +PNKPL IE+V P GEV IK+ +C+ D W G P G +P ILGHE
Sbjct: 2 KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
G VE VGEGV +PGD VI Y C +C++C SG+ NLC
Sbjct: 62 IVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRA------------- 108
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
Y F++Y V + S+ K+ + L C V T + A+ A
Sbjct: 109 ---------EYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRA 158
Query: 191 KVEPGSIVAV-FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
V+ G V V G VG+ + AKA GA RVI + P+K K G ++
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSKF 217
Query: 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309
+ ++++ GG D E +G + +L +KG G V++G RP
Sbjct: 218 SEDVKKL------GGADVVIELVG-SPTIEESLRSLNKG-GRLVLIGNVT-PDPAPLRPG 268
Query: 310 QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEINEAFRYMHG 367
L+ K G S S V++ +K KE K+ + ++L +INEA +
Sbjct: 269 LLIL----KEIRIIG--SISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKS 322
Query: 368 GDCL-RCVLK 376
G + R VLK
Sbjct: 323 GKVVGRIVLK 332
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332 |
| >gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-41
Identities = 109/405 (26%), Positives = 164/405 (40%), Gaps = 61/405 (15%)
Query: 13 AVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
A+ W + +E+V P + +++ TA+C +D + + G P ILGH
Sbjct: 3 ALVWHGKGDVRVEEV--PDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGH 60
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
E G+VE VG V ++ GD V+ + C EC +CK G + C + +
Sbjct: 61 EFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHA 120
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH----DVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
+ I G H G Q V DV KI +K L +PTG A
Sbjct: 121 GA--GIFGYS--HLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHA 176
Query: 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
A+V+PG VAV+G G VGL A AK GA RVI ID P++ + A++ E +N
Sbjct: 177 A-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETIN 235
Query: 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIG---------------------NVSVMRAALE 283
++ D + + L +LT G G D + +G +R A++
Sbjct: 236 FEEVDDVV-EALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQ 294
Query: 284 CCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF--------GGFKSRSQVPWLV 335
KG GT I+GV F + G A G + +P L+
Sbjct: 295 AVRKG-GTVSIIGVYGGT----VNKFPI-------GAAMNKGLTLRMGQTHVQRYLPRLL 342
Query: 336 DKYMKKEIKVDEYVTHNMTLGEINEA---FRYMHGGDCLRCVLKM 377
+ E+ +TH + L + EA F G C++ VLK
Sbjct: 343 ELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDG-CIKVVLKP 386
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386 |
| >gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-40
Identities = 100/364 (27%), Positives = 144/364 (39%), Gaps = 46/364 (12%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KAAV PL E+V V P GEV IKI +CHTD + G +P + GHE
Sbjct: 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
G V VG GV + GD V + C C++C+ G NLC K TG
Sbjct: 61 IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVN-TG-------- 111
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN- 188
++ G +++Y V + PL + L C T V++
Sbjct: 112 ---YTTQG----------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT----VYSA 154
Query: 189 --TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
A PG VAV G+G +G + A+A G + I P K + A+ G E V+
Sbjct: 155 LRDAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDS 213
Query: 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
++ GG D + + + AAL +G G V+VG+ S S
Sbjct: 214 G------AELDEQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPF-SP 265
Query: 307 RPFQLVTGRVW-KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
F L+ R G+ GG + +D + ++K L + NEA+ M
Sbjct: 266 DIFPLIMKRQSIAGSTHGGRADLQE---ALDFAAEGKVKPM---IETFPLDQANEAYERM 319
Query: 366 HGGD 369
GD
Sbjct: 320 EKGD 323
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330 |
| >gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-39
Identities = 108/366 (29%), Positives = 162/366 (44%), Gaps = 40/366 (10%)
Query: 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
KAAV E KP ++DV V P GEV +K+ + +CHTD + G P + P I
Sbjct: 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE AG+V +VG GV+ ++ GD V + C +C++C++G LC +G
Sbjct: 61 GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---QKNSG--- 114
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
++++G TF++Y + V I ++ L C T A+
Sbjct: 115 ------YTVDG----------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL 158
Query: 187 WNTAKVEPGSIVAVFGL-GTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
A ++PG V + G G +G L V AKA G RVI ID+ +K + AK G FV
Sbjct: 159 -KKAGLKPGDWVVISGAGGGLGHLGVQY-AKAMGL-RVIAIDVGDEKLELAKELGADAFV 215
Query: 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
+ K D ++ V GG + + AL+ G GT V VG+ G I
Sbjct: 216 DFKKSD-DVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGF-I 272
Query: 305 STRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 363
PF LV G G+ G +R + ++ + ++K V L ++NE F
Sbjct: 273 PLDPFDLVLRGITIVGSLVG---TRQDLQEALEFAARGKVKPHIQVV---PLEDLNEVFE 326
Query: 364 YMHGGD 369
M G
Sbjct: 327 KMEEGK 332
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 7e-39
Identities = 103/373 (27%), Positives = 160/373 (42%), Gaps = 44/373 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
KAA +E KPL +EDV V P G+V +++ +CH+D + G L P L
Sbjct: 2 KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE AG VE VG GV ++ GD V+ + C C++C+ G+ N C
Sbjct: 62 GHENAGWVEEVGSGVDGLKEGDPVV-VHPPWGCGTCRYCRRGEENYC------------E 108
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
N R +G F++Y +V + K+ + L T AV
Sbjct: 109 NARFPGIGTDG----------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAV 158
Query: 187 WNTAKV-EPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
+PGS V V G+G +G +AV + +A + VI +D + A+ G +
Sbjct: 159 KKALPYLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALKLAERLGADHVL 217
Query: 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
N D +++V +LT G G D + +G+ + A + KG G VIVG G
Sbjct: 218 NAS--DDVVEEVR-ELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGHG-R 272
Query: 304 ISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 363
+ T + T G+ G +R+++ +V + + KV +T L + NEA
Sbjct: 273 LPTSDL-VPTEISVIGS-LWG--TRAELVEVVA--LAESGKVKVEITKFP-LEDANEALD 325
Query: 364 YMHGGDCL-RCVL 375
+ G R VL
Sbjct: 326 RLREGRVTGRAVL 338
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340 |
| >gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-38
Identities = 100/370 (27%), Positives = 161/370 (43%), Gaps = 33/370 (8%)
Query: 13 AVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEA 71
AV ++ + +E+V + + +K+ A+C +D + + G P +LGHE
Sbjct: 3 AVVFKGPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEF 61
Query: 72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKS 131
G V VG V ++ GD V+ + C EC +C+ G++ C K AG
Sbjct: 62 VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG-------- 113
Query: 132 RFSINGKPIYHFMGTSTFSQYTVV--HDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
+++G ++Y V D ++ K+ + LLG +PTG
Sbjct: 114 SPNLDGAQ----------AEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR- 162
Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
A+V PG VAV G G VGL A+ GA+RV +D P++ +RA G E +N +D
Sbjct: 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFED- 220
Query: 250 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP 308
+P+++V + T+G G D E +G + + A + G VGV + +E P
Sbjct: 221 AEPVERVR-EATEGRGADVVLEAVGGAAALDLAFDLVRP-GGVISSVGVHTA-EEF---P 274
Query: 309 FQLVTGRVWKGT-AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
F + T FG RS P L+ + ++ + H M L E EA+R
Sbjct: 275 FPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDK 334
Query: 368 GDCLRCVLKM 377
L+ VL
Sbjct: 335 RKVLKVVLDP 344
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344 |
| >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-36
Identities = 117/385 (30%), Positives = 166/385 (43%), Gaps = 67/385 (17%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDA--YTW-----SGKDPEGLF 63
KA V + + +V V P GEV IK+L ++C TD Y W S P
Sbjct: 2 KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP---- 57
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
P I GHE AG V VGEGVT V+ GD+V AE C +C C++G ++C +
Sbjct: 58 PLIFGHEFAGEVVEVGEGVTRVKVGDYV----SAETHIVCGKCYQCRTGNYHVCQNTK-- 111
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
GV D +G F++Y VV + ++ K D P + + LG
Sbjct: 112 -ILGV---DT------DG----------CFAEYVVVPEENLWKNDKDIPPEIASIQEPLG 151
Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
V T L V G V + G G +GL AKAAGAS VI D +P + + AK
Sbjct: 152 NAVHTVL-----AGDV-SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK 205
Query: 237 NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296
G +NP++ D + +V GVD E GN + L+ G G I+G
Sbjct: 206 KMGADVVINPREED--VVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILG 262
Query: 297 VAASGQEISTRPFQLVTGRVWKG-TAFG--G---FKSRSQVPWLVDKYMKKEIKVDEYVT 350
+ + L ++KG T G G F++ QV L+ ++ + +T
Sbjct: 263 L--PPGPVD---IDLNNLVIFKGLTVQGITGRKMFETWYQVSALLK---SGKVDLSPVIT 314
Query: 351 HNMTLGEINEAFRYMHGGDCLRCVL 375
H + L + EAF M G C + VL
Sbjct: 315 HKLPLEDFEEAFELMRSGKCGKVVL 339
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 |
| >gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-35
Identities = 93/360 (25%), Positives = 143/360 (39%), Gaps = 47/360 (13%)
Query: 19 NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVES 77
+ L D+ P EV +++ AL H D + G L P ILG + AG+VE+
Sbjct: 12 PEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEA 71
Query: 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
VG GVT V+PG V+ C C++C +G+ NLC +++ I G
Sbjct: 72 VGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLC-----------------AQYGILG 114
Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT----AKVE 193
H G +++Y V ++ I ++ P W+ A++
Sbjct: 115 ---EHVDG--GYAEYVAVPARNLLPIPDNLSFEE----AAAAPLTFLTAWHMLVTRARLR 165
Query: 194 PGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252
PG V V G G+ VG A + AK GA VI K +RAK G ++ + D
Sbjct: 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRKEDFV 224
Query: 253 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL 311
+ + +LT GVD E +G + +L+ +G G V G A +G E +
Sbjct: 225 --REVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCG-ATTGYEAPI-DLRH 278
Query: 312 VTGRVWK--GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
V R G+ G + LV K+ + L E EA R + +
Sbjct: 279 VFWRQLSILGSTMGTKAELDEALRLVF-----RGKLKPVIDSVFPLEEAAEAHRRLESRE 333
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342 |
| >gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-35
Identities = 100/379 (26%), Positives = 147/379 (38%), Gaps = 44/379 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG------------KD 58
KAA EP KPL ++ P EV +K+ +CH+D + W G D
Sbjct: 2 KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61
Query: 59 PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
P +LGHE G V +VG +V+ GD V+ C EC C +G NLC K R
Sbjct: 62 RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGR- 120
Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
A G I+ G +++Y +V L C
Sbjct: 121 ALG------------------IFQDGG---YAEYVIVPHSRYLVDPGGLDPALAATLACS 159
Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238
T AV + V + G G +GL KA G + +I +DID K + AK
Sbjct: 160 GLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA 219
Query: 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298
G VN D D + ++ GGVD + + N + A + KG G V+VG+
Sbjct: 220 GADVVVNGSDPDAAKR--IIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLF 276
Query: 299 ASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 358
+ P + +G+ G S ++ LV + K K+ L ++
Sbjct: 277 GGEATLPL-PLLPLRALTIQGSYVG---SLEELRELVA--LAKAGKLKPIPLTERPLSDV 330
Query: 359 NEAFRYMHGGDCL-RCVLK 376
N+A + G + R VLK
Sbjct: 331 NDALDDLKAGKVVGRAVLK 349
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350 |
| >gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 83/305 (27%), Positives = 127/305 (41%), Gaps = 43/305 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYT-WSGK--DPEGLFPCIL 67
KA K IE + + ++ A C +D +T W G + G+ IL
Sbjct: 2 KAFAMLGIGKVGWIE-KPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGM---IL 57
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVI-----PCYQAECRECKFCKSGKTNLCGKVRGATGA 122
GHEA G+VE VG V + +PGD VI P ++ + G + G
Sbjct: 58 GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWR-----SVAAQRGYPSQSG-------- 104
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQAPLDKVCLLGCGVP 180
M+ K +G F++Y V+D ++A + ++ +L +
Sbjct: 105 -GMLGGWKFSNFKDG----------VFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMS 153
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TG A ++ G VAVFG+G VGL GA+ GA R+I + P + + AK +G
Sbjct: 154 TGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA 212
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
T+ V+ K+ D ++Q+L LT G GVD G AL+ G GT V
Sbjct: 213 TDIVDYKNGD-VVEQIL-KLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYG 269
Query: 300 SGQEI 304
+
Sbjct: 270 EDDYL 274
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351 |
| >gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-34
Identities = 112/366 (30%), Positives = 159/366 (43%), Gaps = 54/366 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ---AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
KA V P K I P + +K+L T +C TD + G P IL
Sbjct: 2 KALVYHGPGK---ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRIL 58
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G+VE VG VT + GD V I C + C C +C+ G + C +G ++
Sbjct: 59 GHEGVGVVEEVGSAVTNFKVGDRVLISCISS-CGTCGYCRKGLYSHC-----ESGGWILG 112
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYT-VVH-DVSVAKIDPQAPLDKVCLLGCGVPTGL- 183
N I+G T ++Y + H D S+ K+ + +L +PTG
Sbjct: 113 NL------IDG----------TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYE 156
Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
V N KV+PG VA+ G G VGLA A+ S++I +D+D + + AK G T
Sbjct: 157 CGVLN-GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHT 215
Query: 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHK----GWGTSVIVGVA 298
VN D I+QVL +LTDG GVD E +G + A E C + G G VGV
Sbjct: 216 VNSAKGD-AIEQVL-ELTDGRGVDVVIEAVG----IPATFELCQELVAPG-GHIANVGV- 267
Query: 299 ASGQEISTRPFQLVTGRVW-KGTAFG-GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 356
+P L ++W K G + P L+ ++ + VTH L
Sbjct: 268 ------HGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLS 321
Query: 357 EINEAF 362
EI +A+
Sbjct: 322 EIEKAY 327
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 86/317 (27%), Positives = 126/317 (39%), Gaps = 47/317 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
K A + + L + P +V IKI + +CH+D +T + +P + GHE
Sbjct: 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
GIV +VG VT+ + GD V + C C C+ CKSG+ C K
Sbjct: 61 IVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY--------- 111
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWN 188
NGK + ++ + VV + V KI L C G V++
Sbjct: 112 ------NGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA-----GITVYS 160
Query: 189 ---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
V PG V V G+G +G LAV + AKA GA V P K + A G EF+
Sbjct: 161 PLKRNGVGPGKRVGVVGIGGLGHLAV-KFAKALGA-EVTAFSRSPSKKEDALKLGADEFI 218
Query: 245 NPKDHD--KPIQQ---VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
KD + K +++D D +S+++ GT V+VG
Sbjct: 219 ATKDPEAMKKAAGSLDLIIDTVSASHDLDPY----LSLLKPG--------GTLVLVGAPE 266
Query: 300 SGQEISTRPFQLVTGRV 316
+ PF L+ GR
Sbjct: 267 EPLPVP--PFPLIFGRK 281
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 91/366 (24%), Positives = 134/366 (36%), Gaps = 74/366 (20%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF-------PCILGHEAAGI 74
L +E+ P GEVR+++ +C +D + + G F P +LGHE +G+
Sbjct: 9 LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQ----HGGFGTVRLREPMVLGHEVSGV 64
Query: 75 VESVGEGVTEVQPGDHVI-----PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
VE+VG GVT + PG V PC C +C++G+ NLC +R
Sbjct: 65 VEAVGPGVTGLAPGQRVAVNPSRPCGT-----CDYCRAGRPNLCLNMR------------ 107
Query: 130 KSRFSINGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP- 180
F+G++ F +Y VV + L P
Sbjct: 108 -------------FLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLR---RAALAEPL 151
Query: 181 -TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
L AV N A G V V G G +G V A+ AGA+ ++ D+ A+ G
Sbjct: 152 AVALHAV-NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG 210
Query: 240 VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
E VN G D FE G + + +AL G GT V VG+
Sbjct: 211 ADETVNLARDPLAAYAAD----KGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG 265
Query: 300 SGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 357
+ P + + +G+ F+ + V I V +T L E
Sbjct: 266 GPVPL---PLNALVAKELDLRGS----FRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEE 318
Query: 358 INEAFR 363
EAF
Sbjct: 319 AAEAFA 324
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 83/281 (29%), Positives = 118/281 (41%), Gaps = 44/281 (15%)
Query: 26 DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85
+V P GEV IK+ +C +D + + G P +LGHE +G + VG V
Sbjct: 18 EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGW 77
Query: 86 QPGDHVIPCYQAE-CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144
+ GD V+ C C +C+ G NLC R G +G
Sbjct: 78 KVGDRVVSETTFSTCGRCPYCRRGDYNLCPH-RKGIGTQA-----------DG------- 118
Query: 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVF 201
F++Y +V + S+ ++ L+ L L V AV + + PG V VF
Sbjct: 119 ---GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAV----HAVAERSGIRPGDTVVVF 171
Query: 202 GLGTVGLAVAEGAKAAGASRVI-GIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD- 259
G G +GL A+ AK GA+ V+ G + D + D AK G D ++ L +
Sbjct: 172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGA-------DAVNGGEEDLAEL 224
Query: 260 ---LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296
+TDG G D EC G V + ALE KG G V VG
Sbjct: 225 VNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVG 264
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306 |
| >gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 102/367 (27%), Positives = 149/367 (40%), Gaps = 47/367 (12%)
Query: 11 KAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
+A V P V + D + P + I+++ T +C +D + + G P P +G
Sbjct: 2 RATVIHGPGDIRVEEVPDPVIEEP--TDAVIRVVATCVCGSDLWPYRGVSPTR-APAPIG 58
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
HE G+VE VG VT V+PGD VI + C FC++G T C
Sbjct: 59 HEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC--------------- 103
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCL-----LGCGVPTG 182
++G F+ V D ++ K+ D+ L L + TG
Sbjct: 104 ------VHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTG 157
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242
A +A V PGS V V G G VGL AK GA R+I + + A+ FG T+
Sbjct: 158 HHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATD 216
Query: 243 FVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
V + ++ + +V +LT G G D EC+G M A+ G G VGV G
Sbjct: 217 IVAERG-EEAVARVR-ELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHGG 273
Query: 302 QEISTRP--FQLVTGRVWKGTAFGGFKS-RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI 358
E+ R F+ V GG R +P L+D + I + L E+
Sbjct: 274 VELDVRELFFRNVGLA-------GGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEV 326
Query: 359 NEAFRYM 365
E +R M
Sbjct: 327 AEGYRAM 333
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-30
Identities = 66/222 (29%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA + + IE+V P EV IK+ + LC+ D G P +P ILGHE
Sbjct: 2 KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
G VE VGE V +PGD V A C++C+SG+ C K
Sbjct: 62 VVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC----------------K 105
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 190
+R G+ + F F++Y V S+ K+ P + ++ C + A
Sbjct: 106 NRLGY-GEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRA 158
Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231
V+ G V V G G VG+ + AKA GA +VI + K
Sbjct: 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESK 199
|
Length = 334 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 75/311 (24%), Positives = 115/311 (36%), Gaps = 56/311 (18%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCIL 67
KA V E P L + +V P GEV +++ + D G P P I
Sbjct: 2 KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
G EAAG+V +VG GVT + GD V G G
Sbjct: 62 GSEAAGVVVAVGSGVTGFKVGDRVAALGG--------------------VGRDGG----- 96
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
+++Y VV + + ++ L T A++
Sbjct: 97 ---------------------YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135
Query: 188 NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
+ A ++PG V V G G VG A + AKA GA V+ + +K + K G +N
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINY 194
Query: 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
++ D + + +LT G GVD + +G A+L G G V +G + G +
Sbjct: 195 REED--FVEQVRELTGGKGVDVVLDTVGG-DTFAASLAALAPG-GRLVSIGALSGGPPVP 250
Query: 306 TRPFQLVTGRV 316
L+ R+
Sbjct: 251 LNLLPLLGKRL 261
|
Length = 326 |
| >gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 81/245 (33%), Positives = 115/245 (46%), Gaps = 32/245 (13%)
Query: 39 IKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
++I TA+C +D + + G+ GL +LGHEA G VE VG V ++ GD V+ +
Sbjct: 30 VRITTTAICGSDLHMYRGRTGAEPGL---VLGHEAMGEVEEVGSAVESLKVGDRVVVPFN 86
Query: 97 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTV 154
C C+ CK G T +C V G Y MG Q Y
Sbjct: 87 VACGRCRNCKRGLTGVCLTVNPGRAGGAYG--------------YVDMGPYGGGQAEYLR 132
Query: 155 V--HDVSVAKIDPQAP----LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGL 208
V D ++ K+ + D + L PTG + A V+PG VAVFG G VGL
Sbjct: 133 VPYADFNLLKLPDRDGAKEKDDYLMLSDI-FPTGWHGL-ELAGVQPGDTVAVFGAGPVGL 190
Query: 209 AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268
A A GASRV +D P++ D A++ G ++ D D P++Q+L L GGVD +
Sbjct: 191 MAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSDGD-PVEQIL-GLEPGGVDRA 247
Query: 269 FECIG 273
+C+G
Sbjct: 248 VDCVG 252
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375 |
| >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-27
Identities = 99/361 (27%), Positives = 147/361 (40%), Gaps = 42/361 (11%)
Query: 23 VIEDVQVAPPQAGEVRIKILFTALCHTDA--YTWSGKDPEGL-FPCILGHEAAGIVESVG 79
+ +V V P GEV IK+L T++C TD Y W + P ++GHE AG V +G
Sbjct: 12 ELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIG 71
Query: 80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
GV ++ GD+V C +C C+ G+ ++C + GV D
Sbjct: 72 PGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC---QNTKIFGV---DT---------- 115
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPGS 196
F++Y VV ++ K P + + LG V T L A G
Sbjct: 116 ------DGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL------AGPISGK 163
Query: 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 256
V V G G +GL AKA+GA VI D + + + AK G T VNP D + +
Sbjct: 164 SVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKED--VVKE 221
Query: 257 LVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 315
+ DLTDG GVD E G + L+ G G ++G+ I + G
Sbjct: 222 VADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGL 280
Query: 316 VWKG-TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCV 374
G T F++ V L+ + +D +TH + + F M G + +
Sbjct: 281 TIYGITGRHMFETWYTVSRLIQSGK---LDLDPIITHKFKFDKFEKGFELMRSGQTGKVI 337
Query: 375 L 375
L
Sbjct: 338 L 338
|
This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340 |
| >gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 90/310 (29%), Positives = 137/310 (44%), Gaps = 40/310 (12%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA EP PL + + V P GEV IK+ +CH+DA+ G P +P + GHE
Sbjct: 2 KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVMMN 127
G +++VGEGV+ + GD V + + C C C+ G C GKV G T G
Sbjct: 62 VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDG---- 117
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAV 186
+++Y + ++A+I D + LL GV T A+
Sbjct: 118 --------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGV-TTFNAL 156
Query: 187 WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
N+ +PG +VAV G+G +G LAV + A G R + I K D A+ G +++
Sbjct: 157 RNS-GAKPGDLVAVQGIGGLGHLAV-QYAAKMGF-RTVAISRGSDKADLARKLGAHHYID 213
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
D + L +L GG N + A + G +I+G A+G+ ++
Sbjct: 214 TSKEDVA--EALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILG--AAGEPVA 266
Query: 306 TRPFQLVTGR 315
P QL+ GR
Sbjct: 267 VSPLQLIMGR 276
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333 |
| >gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 81/357 (22%), Positives = 122/357 (34%), Gaps = 77/357 (21%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPE--GLFPCILGHEAAGIVESV 78
+E+ P G+V +++ +C +D ++ G+ P GHE G V ++
Sbjct: 7 FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL 66
Query: 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
G GV + GD V
Sbjct: 67 GPGVRGLAVGDRVA---------------------------------------------- 80
Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLGAVWNTAKVEPG 195
+ F++Y + + P + LGC + V+ + G
Sbjct: 81 ----GLSGGAFAEYDLADADHAVPL-PSLLDGQAFPGEPLGCAL-----NVFRRGWIRAG 130
Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 255
VAV G G +GL + A AAGA RVI ID P + A+ G TE V D + +++
Sbjct: 131 KTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVV-TDDSEAIVER 189
Query: 256 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 314
V +LT G G D E +G+ + A E + G VI G G RP T
Sbjct: 190 V-RELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDG----PRPVPFQTW 243
Query: 315 RVWKGTAFGGFKSRSQVPWL------VDKYMKKEIKVDEYVTHNMTLGEINEAFRYM 365
WKG R L V + + +TH L E+ +AF
Sbjct: 244 N-WKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAA 299
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312 |
| >gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-26
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 28/133 (21%)
Query: 34 AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIP 93
GEV +++ +C +D + + G+ P P ILGHE AGIVE VG GVT ++ GD V+
Sbjct: 1 PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60
Query: 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTS---TFS 150
C +C C+ G+ NLC P F+G F+
Sbjct: 61 YPLIPCGKCAACREGRENLC-------------------------PNGKFLGVHLDGGFA 95
Query: 151 QYTVVHDVSVAKI 163
+Y VV ++ +
Sbjct: 96 EYVVVPARNLVPL 108
|
This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108 |
| >gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-26
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 33/221 (14%)
Query: 11 KAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
KA V +P PL + +V V P GEV IK+ +C TD + G P P I
Sbjct: 2 KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLI 61
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
GHE G VE+VG GVT GD V +P + C EC++C+SG+ NLC R TG
Sbjct: 62 PGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNAR-FTG---- 116
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
++++G G +++Y V + I ++ L C G A
Sbjct: 117 -------YTVDG-------G---YAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA 159
Query: 186 VWNTAKVEPGSIVAVFGLGTVG-----LAVAEGAKAAGASR 221
+ A ++PG + ++G G +A +GA+ +R
Sbjct: 160 L-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329 |
| >gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 53/293 (18%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-------PEGLF 63
KA V + L + DV V P +V IK+ TA+C TD + ++ +
Sbjct: 2 KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV---- 57
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE----CRECKFCKSGKTNLCGKVRGA 119
P ++GHE G V VG VT + GD V E C C+ C++G+ +LC R
Sbjct: 58 PMVVGHEFVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLC---RNT 110
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LG 176
G GV +R G F++Y V+ +V KI P D + G
Sbjct: 111 KGVGV---NR------PG----------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFG 151
Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
V T L ++ G V + G G +G+ A AK GA V+ D++ + + A+
Sbjct: 152 NAVHTALS--FDLV----GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR 205
Query: 237 NFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKG 288
G T VN D ++ V+ +L G D E G S R L+ + G
Sbjct: 206 KMGATRAVNVAKED--LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG 256
|
Length = 341 |
| >gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-25
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 206 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-G 264
VGLA + AKA GA+RVI +D +K + AK G +N +D D + + +LT G G
Sbjct: 2 VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDED--FVERVRELTGGRG 59
Query: 265 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 324
VD +C+G + + ALE G G V+VG+ L+ G+ GG
Sbjct: 60 VDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGG 118
Query: 325 -FKSRSQVPWLVD 336
+ + L
Sbjct: 119 REEFEEALELLAS 131
|
Length = 131 |
| >gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-24
Identities = 93/362 (25%), Positives = 148/362 (40%), Gaps = 43/362 (11%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL--------FPCILGHEAAG 73
L +EDV V + E+ I++ +C +D + + D +G FP ++GHE +G
Sbjct: 39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYE-TDKDGYILYPGLTEFPVVIGHEFSG 97
Query: 74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
+VE G+ V + GD V C C+ C+SG N C N ++ F
Sbjct: 98 VVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC------------KNLKELGF 145
Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL---DKVCLLGCGV-PTGL---GAV 186
S +G F++Y V+ +I+ + DK G V PT + G
Sbjct: 146 SADG----------AFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLF 195
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
PG+ V V+G G +GLA AKAAGAS+VI +I ++ + AK G NP
Sbjct: 196 IRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNP 255
Query: 247 -KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
K D + ++++T G G D E G +E G V +G AA+ +
Sbjct: 256 TKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPL 315
Query: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 364
Q+ ++ G P ++ +I + + +T L I EA +
Sbjct: 316 HLEVLQVRRAQIVGAQGHSGH---GIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKA 372
Query: 365 MH 366
Sbjct: 373 AS 374
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384 |
| >gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 87/384 (22%), Positives = 125/384 (32%), Gaps = 83/384 (21%)
Query: 11 KAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
KAAV P LV+ DV V P EV +K+ AL D +P ILG
Sbjct: 2 KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI-PSYPAILGC 60
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
+ AG V VG GVT + GD V G N
Sbjct: 61 DFAGTVVEVGSGVTRFKVGDRVA----------------------------GFVHGGNPN 92
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT-------- 181
R F +Y V AKI ++ L G+ T
Sbjct: 93 DPR-------------NGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQK 139
Query: 182 -GLGAVW-NTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238
GL + G V ++G + VG + AK AG +VI PK FD K+
Sbjct: 140 LGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITT-ASPKNFDLVKSL 197
Query: 239 GVTEFVNPKD-HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297
G D HD + + + T G + Y+ +CI + E +G
Sbjct: 198 GADAVF---DYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAE----------ALGR 244
Query: 298 AASGQEISTRPFQLVTGR--------VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYV 349
+ G+ +S P T V T FG + + KY+ + ++ +
Sbjct: 245 SGGGKLVSLLPVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLK 304
Query: 350 THNMT-----LGEINEAFRYMHGG 368
H + L + E + G
Sbjct: 305 PHPVRVVEGGLEGVQEGLDLLRKG 328
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339 |
| >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-23
Identities = 73/327 (22%), Positives = 113/327 (34%), Gaps = 81/327 (24%)
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
P G+ + G V VG GVT +PGD V FC
Sbjct: 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRV------------FC---------------- 50
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
G ++ VV + + P ++ L T
Sbjct: 51 ----------------------FGPH--AERVVVPANLLVPLPDGLPPERAALTALA-AT 85
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
L V + A+ G VAV GLG VGL A+ AKAAGA V+G+D D + + A+ G
Sbjct: 86 ALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA 144
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
+ V D ++ G D E G+ S + AL G V+VG
Sbjct: 145 DPVAADTAD--------EIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVGWYGLK 195
Query: 302 QEISTRPF-----QLVTGRVWKGTAFGGFKSRSQVPWLVDKYM------KKEIKVDEYVT 350
+ F + + +V+ W + + E +++ +T
Sbjct: 196 PLLLGEEFHFKRLPIRSSQVYGIGR-----YDRPRRWTEARNLEEALDLLAEGRLEALIT 250
Query: 351 HNMTLGEINEAFRYM--HGGDCLRCVL 375
H + + EA+R + +CL+ VL
Sbjct: 251 HRVPFEDAPEAYRLLFEDPPECLKVVL 277
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 |
| >gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 3e-23
Identities = 79/266 (29%), Positives = 120/266 (45%), Gaps = 45/266 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
KAAV + + V+ + + P + GE +K+ + +CHTD + +G D G ILG
Sbjct: 2 KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG---RILG 58
Query: 69 HEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
HE GIV+ VG GVT ++ GD V I + C C++C +G+ LC V+ A
Sbjct: 59 HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG------- 111
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA---KIDPQAPLDKVCLLGCGVPTGLG 184
++++G M Q V D +V +DP C GV T
Sbjct: 112 -----YTVDGG-----MAE----QCIVTADYAVKVPEGLDPAQASSITC---AGV-TTYK 153
Query: 185 AVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
A+ + ++PG +A++G G +G LA+ A +VI +DI+ K AK G
Sbjct: 154 AI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLT 211
Query: 244 VNPK---DHDKPIQQVLVDLTDGGVD 266
+N K D K IQ+ GG
Sbjct: 212 INSKRVEDVAKIIQE-----KTGGAH 232
|
Length = 338 |
| >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 6e-22
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 42/234 (17%)
Query: 36 EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV---- 91
+V +K+ + LC +D +P LGHE +G VE+VG GV ++ PGD V
Sbjct: 27 DVLVKVASSGLCGSDIPRIFKNGAH-YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVP 85
Query: 92 -IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF- 149
+PC+ C C G +LC K Y F+G+
Sbjct: 86 LLPCFT-----CPECLRGFYSLCAK-------------------------YDFIGSRRDG 115
Query: 150 --SQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVG 207
++Y VV ++ + P++ + + GL A ++ A+ G V + G GT+G
Sbjct: 116 GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIG 173
Query: 208 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP-IQQVLVDL 260
L + A A GA V IDI+ +K AK+ G + N ++ P IQ VL +L
Sbjct: 174 LLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227
|
Length = 347 |
| >gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 7e-21
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 20/233 (8%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCILGHEAAGIV 75
EP KP+V V++ AG+V +K+ +CHTD +Y + G P LGHE +G V
Sbjct: 6 EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRV 65
Query: 76 ESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135
G G G VI C EC+ CK+G+ +C R G ND + F+
Sbjct: 66 IQAGAG-AASWIGKAVIVPAVIPCGECELCKTGRGTIC---RAQKMPG---NDMQGGFA- 117
Query: 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG 195
H + + VV + +A PL+ V ++ V T A A ++ G
Sbjct: 118 -----SHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLKKG 167
Query: 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248
+V V G G VG + + AKA GA+ V+ IDIDP+K + K FG +NPKD
Sbjct: 168 DLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKD 219
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349 |
| >gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-20
Identities = 95/360 (26%), Positives = 143/360 (39%), Gaps = 55/360 (15%)
Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY---TWSGKDPEGLFPCILGHEAAGIVE 76
L I+ ++ P +VR+++ +C +D + T D P ++GHE AGI+E
Sbjct: 27 NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIE 86
Query: 77 SVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN 136
VG V + GD V C C CK G+ NLC
Sbjct: 87 EVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC----------------------- 123
Query: 137 GKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--------LGCGVPTGLGAVWN 188
P F T V A + + P + V L L GV
Sbjct: 124 --PEMKFFATPPVHGSLANQVVHPADLCFKLP-ENVSLEEGAMCEPLSVGVHA-----CR 175
Query: 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV---- 244
A + P + V V G G +GL A+A GA R++ +D+D ++ AK G E V
Sbjct: 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST 235
Query: 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
N +D + ++++ + GG+D SF+C+G M ALE G G +VG+ G
Sbjct: 236 NIEDVESEVEEIQKAMG-GGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGM---GHNE 290
Query: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG--EINEAF 362
T P R + G F+ R+ P ++ +I V +TH E+ EAF
Sbjct: 291 MTVPLTPAAAR--EVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAF 348
|
Length = 364 |
| >gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 62/281 (22%), Positives = 93/281 (33%), Gaps = 67/281 (23%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQA--GEVRIKILFTALCHTDAYTWSG---KDPEGLFPC 65
KA E P V+E V P+ GEV +K+ + D G P
Sbjct: 2 KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
I GH+ AG+V +VG GVT + GD V
Sbjct: 62 IPGHDVAGVVVAVGPGVTGFKVGDEVF--------------------------------- 88
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----T 181
G + G +++Y VV +A + +P T
Sbjct: 89 -----------GMTPFTRGG--AYAEYVVVPADELALKPANLSFE----EAAALPLAGLT 131
Query: 182 GLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
A++ ++ G V + G G VG + AKA GA RVI D ++ G
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT-ASAANADFLRSLGA 189
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAA 281
E ++ D GGVD + +G ++ R+
Sbjct: 190 DEVIDYTKGD-----FERAAAPGGVDAVLDTVGGETLARSL 225
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309 |
| >gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 5e-20
Identities = 82/316 (25%), Positives = 129/316 (40%), Gaps = 47/316 (14%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
L + + V P GEV +++ +L + D + + L P + AG V +
Sbjct: 15 LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPL---SDGAGEVVA 71
Query: 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
VGEGVT + GD V+P + L G A + I+G
Sbjct: 72 VGEGVTRFKVGDRVVPTFFP------------NWLDGPPTAEDEASAL------GGPIDG 113
Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGS 196
++Y V+ + + + ++ L C G+ T A++ ++PG
Sbjct: 114 ----------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGL-TAWNALFGLGPLKPGD 162
Query: 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 256
V V G G V L + AKAAGA RVI +K +RAK G +N + ++V
Sbjct: 163 TVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRTTPDWGEEV 221
Query: 257 LVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 315
L LT G GVD+ E +G + +++ G G ++G SG E L+T
Sbjct: 222 L-KLTGGRGVDHVVE-VGGPGTLAQSIKAVAPG-GVISLIGF-LSGFEAPVLLLPLLTKG 277
Query: 316 -VWKGTAFGGFKSRSQ 330
+G A G SR+Q
Sbjct: 278 ATLRGIAVG---SRAQ 290
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336 |
| >gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 1e-19
Identities = 100/369 (27%), Positives = 144/369 (39%), Gaps = 73/369 (19%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
KA V E P LV+E+V P GEVRI++ + D GK P +
Sbjct: 2 KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVP 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
G E AG+VE+VGEGVT + GD V+ TG G
Sbjct: 62 GSEVAGVVEAVGEGVTGFKVGDRVV-------------------------ALTGQG---- 92
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
F++ VV +V + ++ L T A+
Sbjct: 93 --------------------GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALV 132
Query: 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
A+++PG V V G G VGLA + AKA GA RVI +K A+ G ++
Sbjct: 133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDY 191
Query: 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
D +++ + LT G GVD ++ +G V A+L G G +++G ASG EI
Sbjct: 192 --RDPDLRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIG-FASG-EIP 245
Query: 306 TRPFQL-------VTGRVWKGTAFGGFKSRSQVPW--LVDKYMKKEIKVDEYVTHNMTLG 356
P L V G V+ G + L D + E K+ +V+ L
Sbjct: 246 QIPANLLLLKNISVVG-VYWGAYARREPELLRANLAELFD--LLAEGKIRPHVSAVFPLE 302
Query: 357 EINEAFRYM 365
+ EA R +
Sbjct: 303 QAAEALRAL 311
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 88/367 (23%), Positives = 149/367 (40%), Gaps = 63/367 (17%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
K+ V +PN L IE+ + P AGEVR+K+ +C +D++ + G +P +P ++GHE
Sbjct: 2 KSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
G++++VGEGV + G+ V C C C GK N+C
Sbjct: 61 FFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVC----------------- 103
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV---PTGLGA-V 186
+ + G H G FS+Y VV + +I P A D+ V P + A V
Sbjct: 104 TSLVVLG---VHRDG--GFSEYAVVPAKNAHRI-PDAIADQ-----YAVMVEPFTIAANV 152
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVN 245
+ ++G G VGL + + K VI D ++ AK G +N
Sbjct: 153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN 212
Query: 246 PKDHDKPIQQVLVDLTDGGVDYS--FECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
P+ + L + G+ + + + S++ A V +A+
Sbjct: 213 NAQE--PLGEA---LEEKGIKPTLIIDAACHPSILEEA-------------VTLASPAAR 254
Query: 304 I-----STRPFQLVTGRVWKGTAFGGFKSR---SQVPWLVDKYMKKEIKVDEYVTHNMTL 355
I S+ P ++V + G F SR ++ P ++D K I ++ +TH
Sbjct: 255 IVLMGFSSEPSEIVQQGI-TGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDF 313
Query: 356 GEINEAF 362
+ +A
Sbjct: 314 QHVADAI 320
|
Length = 339 |
| >gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 78/245 (31%), Positives = 114/245 (46%), Gaps = 25/245 (10%)
Query: 37 VRIKILFTALCHTDAYTWSGKD--PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPC 94
V +K++ T +C +D + G+ P GL +LGHE G V G V ++ GD V
Sbjct: 36 VILKVVTTNICGSDQHMVRGRTTAPTGL---VLGHEITGEVIEKGRDVEFIKIGDIVSVP 92
Query: 95 YQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150
+ C C+ CK G T +C V GA V M + G+ Y + + F+
Sbjct: 93 FNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGW-----VGGQSEYVMVPYADFN 147
Query: 151 QYTVV-HDVSVAKIDPQAPLDKVCLLGCGVPTGL-GAVWNTAKVEPGSIVAVFGLGTVGL 208
D ++ KI D L PTG GAV TA V PGS V + G G VGL
Sbjct: 148 LLKFPDRDQALEKI-----RDLTMLSDI-FPTGYHGAV--TAGVGPGSTVYIAGAGPVGL 199
Query: 209 AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268
A A A+ GA+ VI D++P + +A++FG E V+ +Q+ L + VD +
Sbjct: 200 AAAASAQLLGAAVVIVGDLNPARLAQARSFGC-ETVDLSKDATLPEQIEQILGEPEVDCA 258
Query: 269 FECIG 273
+C+G
Sbjct: 259 VDCVG 263
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393 |
| >gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 97/383 (25%), Positives = 150/383 (39%), Gaps = 65/383 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---------KDPEG 61
+A V P + +E+V V P GE+ +K+ +C D + G + P
Sbjct: 2 RAVVCHGP-QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60
Query: 62 LFPCILGHEAAGIVESVGEGVTE--VQPGDHVIPCYQAECRECKFCKSG------KTNLC 113
P I GHE G V +GEG E V+ GD VI C C+FC G K +L
Sbjct: 61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120
Query: 114 GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173
G G + +M F + +VH K+ P +
Sbjct: 121 GFQNNVNGG-----------------MAEYM---RFPKEAIVH-----KVPDDIPPEDAI 155
Query: 174 L---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230
L L C L AV + A ++ +V + G G +GL + A+ ++I +D+ +
Sbjct: 156 LIEPLACA----LHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDE 210
Query: 231 KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGW 289
+ A+ FG +NP + D ++++ +LT G G D E G+ S + L K
Sbjct: 211 RLALARKFGADVVLNPPEVDV-VEKIK-ELTGGYGCDIYIEATGHPSAVEQGLNMIRK-L 267
Query: 290 GTSVIVGVAASGQEISTRPFQLVTGRV---WKGTAFGGFKSRSQVPWLVDKYMKKEIKVD 346
G V V G + T + ++ R G+ G + P +D + D
Sbjct: 268 GRFVEFSVF--GDPV-TVDWSIIGDRKELDVLGSHLGPYCY----PIAIDLIASGRLPTD 320
Query: 347 EYVTHNMTLGEINEAFRYMHGGD 369
VTH L + EAF M GD
Sbjct: 321 GIVTHQFPLEDFEEAFELMARGD 343
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350 |
| >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 9e-18
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 27/254 (10%)
Query: 66 ILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
+LGHE G V ++ G T ++ G V+ C C C+ G C +R
Sbjct: 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCG 178
+ ++++ ++ + P GC
Sbjct: 61 GHE---------ALDSGWPL------SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105
Query: 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238
T + A+ ++ G V V G G +GL A A AAGA+RV+ D P + + A +F
Sbjct: 106 TATVMAALEAAGDLK-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164
Query: 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298
G T P + ++ GVD + E G + +RA LE G GT+V+ G
Sbjct: 165 GATALAEP---EVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSV 220
Query: 299 ASGQEISTRPFQLV 312
G ++ P Q+V
Sbjct: 221 FPGGPVALDPEQVV 234
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 |
| >gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 3e-17
Identities = 75/271 (27%), Positives = 106/271 (39%), Gaps = 68/271 (25%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
L EDV V P GEV ++ + D Y SG P L P +LG E AG+VE+VG G
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL-PFVLGVEGAGVVEAVGPG 72
Query: 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
VT + GD V Y
Sbjct: 73 VTGFKVGDRV--AY---------------------------------------------- 84
Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV---CLLGCGVPTGLGA---VWNTAKVEPG 195
+++Y VV + K+ P D+ LL GL A + T V+PG
Sbjct: 85 -AGPPGAYAEYRVVPASRLVKL-PDGISDETAAALLL-----QGLTAHYLLRETYPVKPG 137
Query: 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 254
V V G VGL + + AKA GA VIG +K + A+ G +N +D D +
Sbjct: 138 DTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRDEDFV-E 195
Query: 255 QVLVDLTDG-GVDYSFECIGNVSVMRAALEC 284
+V ++T G GVD ++ +G +L+
Sbjct: 196 RVR-EITGGRGVDVVYDGVG-KDTFEGSLDS 224
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320 |
| >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-17
Identities = 69/294 (23%), Positives = 110/294 (37%), Gaps = 51/294 (17%)
Query: 19 NKPLVIEDVQVAPPQAGEVRIKILFTALCHTD----------AYTWSGKDPEGLF-PCIL 67
+ PLV+ DV P G+V +K+L +C +D G L +L
Sbjct: 8 DGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVL 67
Query: 68 GHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G V G G +++ G V C + C G + A G
Sbjct: 68 GHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP------EAPGG---- 117
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+++Y ++ + + ++ ++ L + GL AV
Sbjct: 118 ----------------------YAEYMLLSEALLLRVPDGLSMEDAALTE-PLAVGLHAV 154
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
A++ PG + V G G +GLAV KA G ++ D P++ A G V+P
Sbjct: 155 -RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDP 213
Query: 247 KDHDKPIQQVLVDLTDGGV---DYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297
D P +L G FEC+G +++ +E G G V+VGV
Sbjct: 214 AA-DSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGV 265
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 86/368 (23%), Positives = 135/368 (36%), Gaps = 68/368 (18%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
KA V +P P L + ++ + P+ G V I++ L ++ +T G P FP +LG
Sbjct: 2 KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
EA G VE G PG V AT G M
Sbjct: 62 IEAVGEVEEAPGG--TFTPGQRV---------------------------ATAMGGMG-- 90
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
+ +G ++++YT+V + V ID ++ L T G+++
Sbjct: 91 ----RTFDG----------SYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136
Query: 189 TAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVN 245
+ ++PG + + G GT VGLA + AKA GA V P++ K G E ++
Sbjct: 137 SLGLQPGDTLLIRG-GTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID 194
Query: 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
+ ++ GG D E +G ++ + +L G G + G+ GQ
Sbjct: 195 DGAIAEQLRAA-----PGGFDKVLELVGTATL-KDSLRHLRPG-GIVCMTGLLG-GQWTL 246
Query: 306 TR--PFQLVTGRVWKGTAFGGFKSR-SQVP--WLVDKYMKKEIKVDEYVTHNMTLGEINE 360
P + V T G Q P L D + + + T EI E
Sbjct: 247 EDFNPMDDIPSGV-NLTLTGSSSGDVPQTPLQELFDFVAAGHLDI--PPSKVFTFDEIVE 303
Query: 361 AFRYMHGG 368
A YM
Sbjct: 304 AHAYMESN 311
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320 |
| >gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 67/293 (22%), Positives = 106/293 (36%), Gaps = 56/293 (19%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGE 80
L + D+ V P GEV +++ + + D Y +G P + G + AG+VE+VGE
Sbjct: 15 LRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGE 74
Query: 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
GV ++ GD V + + G
Sbjct: 75 GVDGLKVGDRV------------WLTNLGWG------RRQG------------------- 97
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK-VCLLGCGVP--TGLGAVWNTAKVEPGSI 197
T ++Y VV + + ++ L G+P T A+++ A + G
Sbjct: 98 -------TAAEYVVVPADQLVPLPDGVSFEQGAAL---GIPALTAYRALFHRAGAKAGET 147
Query: 198 VAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 256
V V G G VG A + A+ AGA RVI + + + G N + D ++
Sbjct: 148 VLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRAED-LADRI 205
Query: 257 LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309
L GVD E + NV + L+ G G V+ G I P
Sbjct: 206 LAATAGQGVDVIIEVLANV-NLAKDLDVLAPG-GRIVVYGSGGLRGTIPINPL 256
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 4e-15
Identities = 90/340 (26%), Positives = 136/340 (40%), Gaps = 40/340 (11%)
Query: 36 EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
+V +KIL+ +CH+D +T + +P + GHE GIV +G+ V + + GD V +
Sbjct: 39 DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98
Query: 95 YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT- 153
C+ C+ C N C K M+ F+ N I H GT + Y+
Sbjct: 99 IVGSCKSCESCDQDLENYCPK---------MI------FTYNS--IGH-DGTKNYGGYSD 140
Query: 154 --VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA 211
VV V + PLD L C T + EPG + V GLG +G
Sbjct: 141 MIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200
Query: 212 EGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270
+ KA G +V I K D A G F+ D +K + G +DY +
Sbjct: 201 KIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVSTDPEK------MKAAIGTMDYIID 253
Query: 271 CIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR-VWKGTAFGGFKSRS 329
+ V + L K G + +G+ E+ F LV GR + G+ GG K
Sbjct: 254 TVSAVHAL-GPLLGLLKVNGKLITLGLPEKPLELPI--FPLVLGRKLVGGSDIGGIKETQ 310
Query: 330 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
+ ++D K I D + + + EIN A + D
Sbjct: 311 E---MLDFCAKHNITADIEL---IRMDEINTAMERLAKSD 344
|
Length = 360 |
| >gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 28/218 (12%)
Query: 11 KAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
A+ +E + + L +EDV+ P GEV I++ + D + + + P I G
Sbjct: 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-PHIPG 59
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
E AG+VE VG+ V V+ GD V+ + C C SG LC R GV+ N
Sbjct: 60 AEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLC---RNGGIIGVVSN- 115
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
+++Y VV + ++ KI + L T A+
Sbjct: 116 ------------------GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-K 156
Query: 189 TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225
TA + PG V VFG G G+ + AK GA VI +
Sbjct: 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAV 193
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80
L IE++ V P AGEV I++ L DA G E P LG+EAAG+VE+VG
Sbjct: 15 LRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA 74
Query: 81 GVTEVQPGDHV 91
GVT GD V
Sbjct: 75 GVTGFAVGDRV 85
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 78/357 (21%), Positives = 125/357 (35%), Gaps = 75/357 (21%)
Query: 25 EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESVGEG 81
+V + P+ GEV +K+ ++ D G L FP I G + AG V +VG G
Sbjct: 17 VEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSG 76
Query: 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
VT + GD V G+ G
Sbjct: 77 VTRFKVGDEVF---------------GRLPPKG--------------------------- 94
Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
G ++Y V + +AK + + L G+ T L A+ + KV+PG V +
Sbjct: 95 --GG--ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGL-TALQALRDAGKVKPGQRVLI 149
Query: 201 FGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 259
G G VG + AKA GA V G+ + + ++ G E ++ D +
Sbjct: 150 NGASGGVGTFAVQIAKALGA-HVTGVCS-TRNAELVRSLGADEVIDYTTED-----FVAL 202
Query: 260 LTDGGV-DYSFECIGNVSVMRAALECCH--KGWGTSVIVGVAASGQ---EISTRPFQLVT 313
G D F+ +GN + K G V VG SG +
Sbjct: 203 TAGGEKYDVIFDAVGNSP--FSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGG 260
Query: 314 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGG 368
GR + F + + L + + ++K +D + L + EA+R + G
Sbjct: 261 GR--RLKFFLAKPNAEDLEQLAELVEEGKLKPVIDS--VY--PLEDAPEAYRRLKSG 311
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 59/249 (23%), Positives = 93/249 (37%), Gaps = 50/249 (20%)
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
P +LGHE G + + ++ G V C CK+C S N C +R
Sbjct: 60 PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMR------ 111
Query: 124 VMMNDRKSRFSINGKPIYHFMGTST--------FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
F G++ F++Y VV +A +KV +
Sbjct: 112 -------------------FFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD-EKV--M 149
Query: 176 GCGVPTGLGAVWNTAKVEPGSI----VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
P AV A + G + V V G+G +G + K GA+ ++ D+ P+
Sbjct: 150 AFAEPL---AVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRS 206
Query: 232 FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGT 291
A+ G + VNP++ D + G D SFE G+ S + LE + G
Sbjct: 207 LSLAREMGADKLVNPQNDDLDHYKA----EKGYFDVSFEVSGHPSSINTCLEVT-RAKGV 261
Query: 292 SVIVGVAAS 300
V VG+ +
Sbjct: 262 MVQVGMGGA 270
|
Length = 343 |
| >gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 63/270 (23%), Positives = 102/270 (37%), Gaps = 58/270 (21%)
Query: 10 CKAAVAWEPNKPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
KA V +P L + ++ P AGEV +K+ L D + P +P +
Sbjct: 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVP 60
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
G + AG+V +VG VT + GD V
Sbjct: 61 GVDGAGVVVAVGAKVTGWKVGDRV------------------------------------ 84
Query: 128 DRKSRFSINGKPIYHFMGTS--TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
YH +F++YTVV +V + ++ L C T A
Sbjct: 85 ------------AYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQA 132
Query: 186 VWNTAKVEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
++ ++E G +I+ G G VG + AK AG RVI + F+ K+ G +
Sbjct: 133 LFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHVI 190
Query: 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIG 273
+ D D + + + ++T G GVD + +G
Sbjct: 191 DYNDED--VCERIKEITGGRGVDAVLDTVG 218
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325 |
| >gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
KA V P V E +V PQ G+V +++ + + D G P IL
Sbjct: 2 KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQ 96
G + AG+VE+VGEGVT + GD V C
Sbjct: 62 GCDVAGVVEAVGEGVTRFRVGDEVYGCAG 90
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326 |
| >gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 66/288 (22%), Positives = 102/288 (35%), Gaps = 74/288 (25%)
Query: 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAA 72
A+ + L +ED+ P GE +++L +C+TD + G P FP + GHE
Sbjct: 3 ALVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFV 59
Query: 73 GIVESVGEG-------VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
GIVE E V E+ C C++C+ G C
Sbjct: 60 GIVEEGPEAELVGKRVVGEI----------NIACGRCEYCRRGLYTHC------------ 97
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG--- 182
++ I + F++Y PL+ + ++ VP
Sbjct: 98 --PNRTVLGIVDRD-------GAFAEYLT------------LPLENLHVVPDLVPDEQAV 136
Query: 183 ----LGAVWNT---AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235
L A + PG VAV G G +GL +A+ G V+ + +K A
Sbjct: 137 FAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALA 195
Query: 236 KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALE 283
+ GV E V P + + GG D E G+ S + AL
Sbjct: 196 RRLGV-ETVLPDE---------AESEGGGFDVVVEATGSPSGLELALR 233
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD------AYTWSGKDPEGLFP 64
KA + + D+ P GEV ++ L +C TD Y + P G
Sbjct: 2 KAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTA---PPGEDF 58
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC----GKVRGAT 120
+LGHEA G+VE VG+G + + PGD V+P + +C C+ G+ + C RG
Sbjct: 59 LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIK 117
Query: 121 GA-GVM 125
G G M
Sbjct: 118 GLHGFM 123
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355 |
| >gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 36 EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
+V IK+++ +CHTD + +P + GHE G V VG V++ GD V +
Sbjct: 36 DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95
Query: 95 YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
C EC CKS C K + ND +GKP F+ V
Sbjct: 96 IVGCCGECSPCKSDLEQYCNKRIWS------YND----VYTDGKPT-----QGGFASAMV 140
Query: 155 VHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
V V KI + AP LL GV T + + + G + GLG VG +
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGV-TVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKI 199
Query: 214 AKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
AKA G + D K+ + ++ G +++
Sbjct: 200 AKAMGHHVTVISSSDKKREEALEHLGADDYL 230
|
Length = 357 |
| >gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 20 KPLVIEDVQVA--PPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAGI 74
PLV+E V + PP GEV +++L + +D T SG P P + G+E G+
Sbjct: 10 LPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP--LPAVPGNEGVGV 67
Query: 75 VESVGEGVTEVQPGDHVIP 93
V VG GV+ + G V+P
Sbjct: 68 VVEVGSGVSGLLVGQRVLP 86
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323 |
| >gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-10
Identities = 66/274 (24%), Positives = 98/274 (35%), Gaps = 69/274 (25%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
KA V EP P L + +V P GEV I++ + D G P G I
Sbjct: 2 KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASD-I 60
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LG E AG+V +VG GVT + GD V C + G G
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV---------------------CALLAG--GG---- 93
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----TG 182
+++Y VV + + L + +P T
Sbjct: 94 ----------------------YAEYVVVPAGQLLPVPEGLSLVE----AAALPEVFFTA 127
Query: 183 LGAVWNTAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
++ ++ G V + G G VG A + AKA GA RVI +K + + G
Sbjct: 128 WQNLFQLGGLKAGETVLIHG-GASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGA 185
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 273
+N + D + + + T G GVD + +G
Sbjct: 186 DVAINYRTED--FAEEVKEATGGRGVDVILDMVG 217
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 78/301 (25%), Positives = 113/301 (37%), Gaps = 31/301 (10%)
Query: 36 EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPC 94
+V +KILF +CH+D +T +P I GHE GI VG+ VT+ + GD V +
Sbjct: 33 DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92
Query: 95 YQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTV 154
C+ C+ C N C KV F+ N + +S V
Sbjct: 93 IIGSCQSCESCNQDLENYCPKV---------------VFTYNSRSSDGTRNQGGYSDVIV 137
Query: 155 VHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEG 213
V V I P D L C G+ + E G + V GLG +G +
Sbjct: 138 VDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKI 197
Query: 214 AKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273
KA G + K+ + G F+ D K + V G +D+ I
Sbjct: 198 GKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAV------GTMDF---IID 248
Query: 274 NVSVMRAALECCH--KGWGTSVIVGVAASGQEISTRPFQLVTGR-VWKGTAFGGFKSRSQ 330
VS A L K G V +G+ ++ F LV GR + G+ GG K +
Sbjct: 249 TVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPI--FPLVLGRKMVGGSQIGGMKETQE 306
Query: 331 V 331
+
Sbjct: 307 M 307
|
Length = 375 |
| >gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIV 75
+P L I +V P AGEV ++ + + + D +T G P I G EA G+V
Sbjct: 11 DPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVV 70
Query: 76 ESVGEGVTEVQPGDHV 91
++VGEGV +Q G V
Sbjct: 71 DAVGEGVKGLQVGQRV 86
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 79/375 (21%), Positives = 122/375 (32%), Gaps = 87/375 (23%)
Query: 16 WEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDP-----EGLFPCILGH 69
EP + L +E ++ PP EV +K+L + D G P P + G+
Sbjct: 10 GEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGN 69
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
E G V VG GV ++PGD VIP G G
Sbjct: 70 EGVGEVVKVGSGVKSLKPGDWVIP------------------------LRPGLG------ 99
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT 189
T+ + VV + K+ ++ L T + +
Sbjct: 100 ------------------TWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDF 141
Query: 190 AKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV 244
K++PG V G VG AV + AK G + I + D + K G +
Sbjct: 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVL 200
Query: 245 NPKD-HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ- 302
++ ++L G + C+G S A G GT V G SGQ
Sbjct: 201 TEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELA-RLLSPG-GTMVTYG-GMSGQP 257
Query: 303 -EISTRPFQLVTGRVWKGTAFGGF------KSRSQ------VPWLVDKYMKKEIK--VDE 347
+ T ++K GF K + + L + + ++K E
Sbjct: 258 VTVPTSLL------IFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVE 311
Query: 348 YVTHNMTLGEINEAF 362
VT + L E +A
Sbjct: 312 KVTDDP-LEEFKDAL 325
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341 |
| >gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 21 PLVIEDVQVAP--PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78
P V++ V+ P P EV+++ + + D Y SG P P LG EAAG+V V
Sbjct: 13 PEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKV 72
Query: 79 GEGVTEVQPGDHVI 92
G GV ++ GD V+
Sbjct: 73 GSGVKHIKVGDRVV 86
|
Length = 327 |
| >gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92
EV +++ L D G P LG E +GIV VG GVT ++ GD V+
Sbjct: 1 DEVEVEVKAAGLNFRDVLVALGLLPGD--ETPLGLECSGIVTRVGSGVTGLKVGDRVM 56
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293 |
| >gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILGHEAAGIVESVG 79
L +E + P +GEVR+++ L D G P + G E AG VE+VG
Sbjct: 14 LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP-PFVPGFECAGTVEAVG 72
Query: 80 EGVTEVQPGDHVI 92
EGV + + GD V+
Sbjct: 73 EGVKDFKVGDRVM 85
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 54/259 (20%), Positives = 83/259 (32%), Gaps = 62/259 (23%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILGHEAAGIVESVG 79
L I + P+ +V IK+ + D GK P G ILG E AG VE VG
Sbjct: 16 LKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSE-ILGLEVAGYVEDVG 74
Query: 80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139
V + GD V+ + G
Sbjct: 75 SDVKRFKEGDRVM---------------------ALLPGG-------------------- 93
Query: 140 IYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----TGLGAVWNTAKVEPG 195
+++Y V H V I ++ +P T + V+ G
Sbjct: 94 --------GYAEYAVAHKGHVMHIPQGYTFEE----AAAIPEAFLTAWQLLKKHGDVKKG 141
Query: 196 SIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQ 254
V + G VG A A+ A+ GA+ +I +K D K + D +
Sbjct: 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTS-SEEKVDFCKKLAAIILIRYPDEEGFAP 200
Query: 255 QVLVDLTDGGVDYSFECIG 273
+V + GV+ +C+G
Sbjct: 201 KVKKLTGEKGVNLVLDCVG 219
|
Length = 334 |
| >gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 65/273 (23%), Positives = 94/273 (34%), Gaps = 77/273 (28%)
Query: 24 IEDVQVAPPQAGEVRIKILFTALCHTDAYT--WSGKDPEGLFPCILGHEAAGIVESVGEG 81
+E+V V P G+V ++ L+ +L D Y P P LG G V +
Sbjct: 29 LEEVDVPEPGEGQVLLRTLYLSL---DPYMRGRMSDAPSYAPPVELGEVMVGGT--VAKV 83
Query: 82 V----TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSING 137
V QPGD V+
Sbjct: 84 VASNHPGFQPGDIVV--------------------------------------------- 98
Query: 138 KPIYHFMGTSTFSQYTVVHDVSVAKIDP-QAPL-DKVCLLGCGVPTGLGA---VWNTAKV 192
G S + +Y + + K+DP APL + +LG GL A + + +
Sbjct: 99 -------GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLG---MPGLTAYFGLLDIGQP 148
Query: 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPKDHD 250
+ G V V G VG V + AK G RV+GI +K D G ++ K D
Sbjct: 149 KAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKAED 207
Query: 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALE 283
Q L + G+D FE +G V+ A L
Sbjct: 208 --FAQALKEACPKGIDVYFENVGGE-VLDAVLP 237
|
Length = 340 |
| >gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 11 KAAVAWEPNK---PLVIEDVQVAPPQAG--EVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
KA +P P + D+++ P G ++ +++ ++ D +G P P
Sbjct: 2 KAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK 61
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHV 91
ILG +A+G+VE+VG VT + GD V
Sbjct: 62 ILGWDASGVVEAVGSEVTLFKVGDEV 87
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336 |
| >gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 6e-07
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 21 PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVES 77
PL + V P GE+ +++ +C TD + G P + P GHE G V
Sbjct: 14 PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTP---GHEVVGEVAG 70
Query: 78 VGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVR 117
G GD V I + C C++C+ G NLC R
Sbjct: 71 RGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASR 111
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329 |
| >gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 59/253 (23%)
Query: 24 IEDVQVAPPQAGEVRIKILFTALCHTDA-YTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82
I DV V P GEV +K F + +D +T DP P G E G V +VGEGV
Sbjct: 20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGV 79
Query: 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYH 142
T+ + GD V
Sbjct: 80 TDFKVGDAVA-------------------------------------------------- 89
Query: 143 FMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 202
M F++Y VV + P+ + + LL G+ T A+ +++ G V V
Sbjct: 90 TMSFGAFAEYQVVPARHAVPV-PELKPEVLPLLVSGL-TASIALEEVGEMKSGETVLVTA 147
Query: 203 L--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL 260
GT AV + AK AG VIG +K + K+ G +N K D + +VL
Sbjct: 148 AAGGTGQFAV-QLAKLAG-CHVIGTCSSDEKAEFLKSLGCDRPINYKTED--LGEVLKKE 203
Query: 261 TDGGVDYSFECIG 273
GVD +E +G
Sbjct: 204 YPKGVDVVYESVG 216
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 65/282 (23%), Positives = 96/282 (34%), Gaps = 79/282 (28%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY--TWSGKDPEGLFPCILGH--EAAGI--- 74
+ +V + + GEV ++ L+ ++ D Y W P LG G+
Sbjct: 20 FELVEVPLPELKDGEVLVRTLYLSV---DPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEV 76
Query: 75 VESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS 134
VES + GD V
Sbjct: 77 VESRSPD---FKVGDLV------------------------------------------- 90
Query: 135 INGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLG-CGVP--TGLGAVWNTA 190
F+G + +Y VV S + K+DP L LG G+ T +
Sbjct: 91 ------SGFLG---WQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG 141
Query: 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKD 248
K +PG V V G VG V + AK GA RV+GI +K G +N K
Sbjct: 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT 200
Query: 249 HDKPIQQVLVDLTDGGVDYSFECIGNV--SVMRAALECCHKG 288
D + + L + G+D F+ NV ++ AAL +KG
Sbjct: 201 PD--LAEALKEAAPDGIDVYFD---NVGGEILDAALTLLNKG 237
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 28 QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86
+VAPP GEVRI++ +L D G P +P G EA+G+V +VG VT +
Sbjct: 1 EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60
Query: 87 PGDHVI 92
GD VI
Sbjct: 61 VGDEVI 66
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303 |
| >gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC----------- 65
+P + + +EDV V GEV + ++ + + + + G+ P F
Sbjct: 25 DPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGE-PVSTFAARQRRGRDEPYH 83
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVI 92
I G +A+GIV +VGEGV + GD V+
Sbjct: 84 IGGSDASGIVWAVGEGVKNWKVGDEVV 110
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393 |
| >gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
I+G +A+G+V VG GVT + GD V+ C Q + + G L + R
Sbjct: 80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPD-GRDGDPMLSSEQR------- 131
Query: 125 MMNDRKSRFSINGKPIYHFMGT-STFSQYTVVHDVSVAKIDPQAPL----DKVCLLGCGV 179
I+ + +F+++ +V D ++ P+ + C G
Sbjct: 132 ---------------IWGYETNFGSFAEFALVKD---YQLMPKPKHLTWEEAACPGLTG- 172
Query: 180 PTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
T + WN A V+PG V ++G G +G + A+A G + V + P+K + +
Sbjct: 173 ATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV-AVVSSPEKAEYCR 231
Query: 237 NFGVTEFVNPKDHD 250
+ G ++ D
Sbjct: 232 SLGAEAVIDRNDFG 245
|
The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398 |
| >gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAY----TWSGKDPEGLFPCILGHEAAGIVES 77
L + + + P AGEV +K+ + + D + + P P G++ G V++
Sbjct: 15 LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPP---LPFTPGYDLVGRVDA 71
Query: 78 VGEGVTEVQPGDHVI 92
+G GVT + GD V
Sbjct: 72 LGSGVTGFEVGDRVA 86
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331 |
| >gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 8e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVI 92
LG E AG+V VG GVT + GD V+
Sbjct: 26 LGGECAGVVTRVGPGVTGLAVGDRVM 51
|
Enoylreductase in Polyketide synthases. Length = 287 |
| >gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 13 AVAWEPNKPL----VIEDVQVAPPQAGE--VRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
AV ++ P+ + D+ + P+ G + +++ ++ D + PE P I
Sbjct: 2 AVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKI 61
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
LG +AAG+V +VG+ VT +PGD V
Sbjct: 62 LGWDAAGVVVAVGDEVTLFKPGDEV 86
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336 |
| >gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 143 FMGTSTFSQYTVV---HDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-----AKVE 193
+ G T SQY +V D S+ + L++ P LG + K+
Sbjct: 95 YGGQGTLSQYLLVDPKKDKKSITRKPENISLEE----AAAWPLVLGTAYQILEDLGQKLG 150
Query: 194 PGSIVAVFGLGT-VGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD- 250
P S V V G T VG + AK V+G + + K G F++ H
Sbjct: 151 PDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGT-CSSRSAELNKKLGADHFIDYDAHSG 209
Query: 251 -KPIQQVLVDLTDGG-VDYSFECIGN 274
K ++ VL ++ G D +C+G
Sbjct: 210 VKLLKPVLENVKGQGKFDLILDCVGG 235
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352 |
| >gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
KA EP P V+ V+V P AGEV I++ + D +GK P G I
Sbjct: 2 KAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD-I 60
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV 91
LG E AG V +VGEGV+ + GD V
Sbjct: 61 LGLEVAGEVVAVGEGVSRWKVGDRV 85
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325 |
| >gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 74/287 (25%), Positives = 104/287 (36%), Gaps = 59/287 (20%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCILGHEAAGIVESV 78
LV EDV P G+VRI + + D SG P P + G E AG+V++V
Sbjct: 15 LVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAV 74
Query: 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
G GV G V+ TG
Sbjct: 75 GPGVDPAWLGRRVV-------------------------AHTG----------------- 92
Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKI-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSI 197
+++ V S+ + D V ++ G T LG + + A + PG +
Sbjct: 93 -----RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGR-TALGLL-DLATLTPGDV 145
Query: 198 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQV 256
V V G +G + + AKAAGA V+G P K + G V+ D P QV
Sbjct: 146 VLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTRPDWP-DQV 203
Query: 257 LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
L GGV + +G + RAAL G G + G ASG+
Sbjct: 204 REALGGGGVTVVLDGVGGA-IGRAALALLAPG-GRFLTYG-WASGEW 247
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 176 GCGVPTGLGA----VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231
GV G+ A + T +E G VAV GLG VG +AE GA ++I DI+ +
Sbjct: 6 AYGVFLGMKAAAEHLLGTDSLE-GKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEA 63
Query: 232 FDRA-KNFGVT 241
RA + FG T
Sbjct: 64 VARAAELFGAT 74
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200 |
| >gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
+ + G G VG ++AE + G V+ ID DP++ + + GV
Sbjct: 1 IIIIGYGRVGRSLAEELREGG-PDVVVIDKDPERVEELREEGVP 43
|
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
+AV GLG VGL +A G V G+DID +K D+ G + P
Sbjct: 3 IAVIGLGYVGLPLAALLADLGHD-VTGVDIDQEKVDKLNK-GKSPIYEP 49
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 59/258 (22%), Positives = 97/258 (37%), Gaps = 62/258 (24%)
Query: 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCH-TDAYTWSGKDPE--GL-FPCILG 68
A+ + + +V + PP G++ ++I ++ + T+ W+G P G+ +P + G
Sbjct: 4 AIVLSGPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPG 63
Query: 69 HEAAGIVESVGEGVTEVQPGDHV-IP---CYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
+E+ G V G +PGD V +P CY VRG G
Sbjct: 64 YESVGRVVEAGPDTGF-RPGDRVFVPGSNCY------------------EDVRGLFGGA- 103
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
S+ V V ++DP L L T
Sbjct: 104 -------------------------SKRLVTPASRVCRLDPA--LGPQGALLALAATARH 136
Query: 185 AV-WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
AV KV P IV G GT+G +A KAAG S + +P++ D A + V
Sbjct: 137 AVAGAEVKVLPDLIV---GHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--- 190
Query: 244 VNPKDHDKPIQQVLVDLT 261
++P+ + + + D +
Sbjct: 191 LDPEKDPRRDYRAIYDAS 208
|
[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308 |
| >gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 58/246 (23%), Positives = 85/246 (34%), Gaps = 64/246 (26%)
Query: 25 EDVQVAPPQAGEVRIKILFTALCHTDAYT---WSGKD----------------PEGL-FP 64
+DV V P GEV I++ + +TD T W + L FP
Sbjct: 19 DDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFP 78
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
I G + G V +VGEGV + G+ V+ +R
Sbjct: 79 RIQGADIVGRVVAVGEGVDTARIGERVL---------VDPS----------IRDPPEDDP 119
Query: 125 MMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGV 179
D ++G+ F++YTVV + ++ PL V L C
Sbjct: 120 ADID--------------YIGSERDGGFAEYTVVPAENAYPVNS--PLSDVELATFPCSY 163
Query: 180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238
T + A V G V V G G VG A+ + AK GA VI + K + +
Sbjct: 164 STAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV-AGAAKEEAVRAL 220
Query: 239 GVTEFV 244
G +
Sbjct: 221 GADTVI 226
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237
+ V GLG VGL +A A A+ +VIG+DI+ KK D+
Sbjct: 12 IGVIGLGYVGLPLA-AAFASAGFKVIGVDINQKKVDKLNR 50
|
Length = 436 |
| >gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 20 KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESV 78
K L + + +V P GEV IK+ + +D G+ P G E +G V +
Sbjct: 16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA 75
Query: 79 GEGV 82
G G
Sbjct: 76 GGGP 79
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 100.0 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 100.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 100.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 100.0 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 100.0 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 100.0 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 100.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 100.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 100.0 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 100.0 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 100.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 100.0 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 100.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 100.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 100.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 100.0 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 100.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 100.0 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 100.0 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 100.0 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 100.0 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 100.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 100.0 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 100.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 100.0 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 100.0 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 100.0 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 100.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 100.0 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 100.0 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 100.0 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 100.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 100.0 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 100.0 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 100.0 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 100.0 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 100.0 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 100.0 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 100.0 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 100.0 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 100.0 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 100.0 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 100.0 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 100.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 100.0 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 100.0 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 100.0 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 100.0 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 100.0 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 100.0 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 100.0 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 100.0 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 100.0 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 100.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 100.0 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 100.0 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 100.0 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 100.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 100.0 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 100.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 100.0 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 100.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 100.0 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 100.0 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 100.0 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 100.0 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 100.0 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 100.0 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 100.0 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 100.0 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 100.0 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 100.0 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 100.0 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 100.0 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 100.0 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 100.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 100.0 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 100.0 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 100.0 | |
| cd08247 | 352 | AST1_like AST1 is a cytoplasmic protein associated | 100.0 | |
| cd08288 | 324 | MDR_yhdh Yhdh putative quinone oxidoreductases. Yh | 100.0 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 100.0 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 100.0 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 100.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 100.0 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 100.0 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 100.0 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 100.0 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 100.0 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 100.0 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 100.0 | |
| cd08275 | 337 | MDR3 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 99.98 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 99.97 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 99.96 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.95 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 99.94 | |
| PF08240 | 109 | ADH_N: Alcohol dehydrogenase GroES-like domain; In | 99.89 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 99.73 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.46 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 99.35 | |
| PF13602 | 127 | ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ | 99.27 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.53 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.41 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.26 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.22 | |
| PF11017 | 314 | DUF2855: Protein of unknown function (DUF2855); In | 98.15 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.11 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.1 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.84 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.8 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 97.74 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.72 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.69 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.63 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.54 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.53 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 97.52 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.51 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.42 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.36 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 97.33 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.3 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.26 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.22 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.22 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.19 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.16 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.12 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.11 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 97.05 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.03 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 97.02 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.98 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 96.96 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.9 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 96.88 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.88 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 96.88 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 96.81 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.74 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.74 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.74 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.73 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.73 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 96.72 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 96.71 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.7 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.7 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.69 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 96.68 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 96.67 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 96.62 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.62 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 96.62 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 96.6 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 96.59 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.56 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.55 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 96.55 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.53 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.49 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 96.49 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 96.48 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.46 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 96.46 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 96.45 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 96.43 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.43 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 96.43 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 96.42 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.4 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 96.38 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 96.37 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 96.35 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.34 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.33 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.33 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.32 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 96.29 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.29 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.28 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 96.27 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.26 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.26 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 96.26 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 96.24 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.22 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.2 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.2 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.18 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 96.17 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 96.17 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.17 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 96.16 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 96.15 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 96.14 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.14 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.12 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 96.1 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.08 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.07 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 96.07 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.06 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 96.06 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 96.05 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 96.02 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 96.02 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 96.02 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.01 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.99 | |
| PLN02366 | 308 | spermidine synthase | 95.99 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.97 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 95.97 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 95.97 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.96 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.95 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.93 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 95.92 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.92 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 95.9 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.9 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.89 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.89 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.88 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 95.87 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.86 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.85 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 95.84 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 95.84 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 95.83 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 95.83 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 95.83 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.82 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.81 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.8 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.8 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 95.79 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.79 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 95.79 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.77 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 95.76 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 95.76 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 95.76 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 95.75 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 95.75 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.73 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 95.73 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.72 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.72 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.72 | |
| PLN02476 | 278 | O-methyltransferase | 95.7 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 95.7 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.69 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 95.68 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.68 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 95.67 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 95.67 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 95.66 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.65 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.64 | |
| PRK05717 | 255 | oxidoreductase; Validated | 95.64 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 95.64 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 95.64 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 95.62 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 95.62 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.62 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 95.61 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 95.6 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 95.59 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 95.58 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.57 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 95.57 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.57 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.57 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.56 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 95.56 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.54 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 95.54 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 95.54 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.54 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 95.52 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 95.52 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 95.52 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.51 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 95.51 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 95.5 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 95.49 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 95.49 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.47 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 95.47 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 95.47 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 95.46 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.46 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 95.46 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 95.45 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 95.42 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.42 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.41 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.41 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.39 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.39 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 95.38 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 95.38 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.38 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.38 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 95.38 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 95.37 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.35 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.35 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.33 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 95.33 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 95.33 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 95.31 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 95.31 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.3 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.3 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.3 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.29 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.29 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 95.28 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.27 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.26 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.25 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 95.24 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 95.24 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.22 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.21 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.19 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 95.18 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.18 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 95.13 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.12 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 95.1 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.1 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.07 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.07 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.07 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.05 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.04 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.02 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 94.99 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 94.97 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 94.92 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.91 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 94.91 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.9 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.9 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 94.89 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 94.89 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 94.88 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 94.87 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 94.85 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 94.84 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.82 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 94.81 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 94.79 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 94.78 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 94.77 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.76 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.76 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.76 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.75 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 94.74 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.71 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.69 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 94.69 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 94.68 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.67 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 94.66 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 94.65 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 94.61 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.61 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.59 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.57 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.56 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 94.53 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.51 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 94.51 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 94.5 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.49 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.49 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 94.47 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 94.46 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.46 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.44 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 94.43 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.42 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.39 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 94.37 | |
| PF13823 | 23 | ADH_N_assoc: Alcohol dehydrogenase GroES-associate | 94.36 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.35 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.35 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 94.32 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 94.29 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.28 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.27 | |
| PLN02823 | 336 | spermine synthase | 94.27 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 94.23 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.23 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 94.18 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.17 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.16 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 94.13 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 94.12 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 94.12 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.1 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 94.09 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.04 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.04 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 94.03 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 94.03 | |
| PRK04266 | 226 | fibrillarin; Provisional | 94.01 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.01 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.01 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.99 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 93.99 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 93.99 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.98 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 93.98 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.96 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.95 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.95 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 93.94 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.93 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 93.91 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.91 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.79 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 93.79 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 93.77 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 93.77 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 93.74 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 93.71 | |
| PLN02928 | 347 | oxidoreductase family protein | 93.71 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 93.7 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 93.68 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 93.67 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 93.67 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 93.65 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 93.65 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.64 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.64 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 93.64 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.63 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 93.58 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 93.57 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 93.54 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 93.51 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 93.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 93.49 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.45 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 93.45 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.43 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.42 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.42 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.37 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.35 |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-69 Score=467.66 Aligned_cols=374 Identities=74% Similarity=1.264 Sum_probs=361.7
Q ss_pred CCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 016978 4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
..++.++||++.+++++||.++|++.++|+.+||+||+.++++|++|...++|..+...+|.++|||.+|+|+++|..|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 45678999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
++++||+|+......|+.|.+|+++..|+|...+....-+...+||+++|.-+|+.+||+++.-+|+||.+++...+++|
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI 161 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI 161 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence 99999999999999999999999999999999999888888878999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+++.+++.++++.|.++|+|.|.++.++++||++|.|.|.|++|++++|-|++.|+.++|++|-+++|.+.++++|++++
T Consensus 162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~ 241 (375)
T KOG0022|consen 162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF 241 (375)
T ss_pred CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecC
Q 016978 244 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFG 323 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (379)
+|+.+.....++.+++.|++|+|+-|||+|+.+++++++.+..++||+-|.+|....+..+++.++.++.++++.|+.++
T Consensus 242 iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FG 321 (375)
T KOG0022|consen 242 INPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFG 321 (375)
T ss_pred cChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecc
Confidence 99986555799999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
.++.+.+++.+++...++++.+.++|++++||+++++||+.|.+++..|.||.+
T Consensus 322 G~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~ 375 (375)
T KOG0022|consen 322 GFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM 375 (375)
T ss_pred cccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence 999999999999999999999999999999999999999999999999998864
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-69 Score=475.21 Aligned_cols=366 Identities=62% Similarity=1.074 Sum_probs=352.6
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
+++||++.+++++|++++|+++++|.+|||+||+.|+|+||+|..+++|..|.. +|.++|||++|+|++||+.|+++++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 457999999999999999999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|+......|+.|.+|+++++|+|.......+-|.. .+|+++++.+|.+.+|+++.++|++|..+++..++|++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m-~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM-PDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccc-cCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence 99999999999999999999999999999988888866 99999999999999999999999999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+++.++++.|..+|.+.++++.+++++|++|.|.|.|++|++++|-|+..|+.+||+++.+++|+++++++|+++++|..
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~ 238 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (379)
+. .+.++.+.++|++|+|++|||+|+...+++++.++.+ +|+.+.+|.......++++++.++.+++|+|++++....
T Consensus 239 ~~-~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p 316 (366)
T COG1062 239 EV-DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARP 316 (366)
T ss_pred hh-hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCceeecChHHeeccceEEEEeecCCcc
Confidence 72 2699999999999999999999999999999999999 599999999888888999999999999999999999888
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+.++++++++..+|++++.+++++.++|+|||+||+.+.+++..|.||++
T Consensus 317 ~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 317 RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 89999999999999999999999999999999999999999999888865
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=472.14 Aligned_cols=335 Identities=34% Similarity=0.516 Sum_probs=305.4
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
+++|||+++.++++|+++.|++.|+|+++||+|+|.|+|+|++|++.++|.++...+|.+||||.+|+|+++|++|++|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEee-cCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 87 PGDHVIP-CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 87 ~Gd~V~~-~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
+||||.+ +...+|+.|.||+++++++|++... +|++ .+| +|+||+++|+.++++||+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~-~~G------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYT-TDG------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---ccee-ecC------------------cceeEEEEchHHeEECCC
Confidence 9999998 8999999999999999999999664 4555 555 999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++++||.+.|+..|+|++| ++.+++||++|+|+|+|++|++++|+|+++|+ +|++++++++|+++++++|++++++
T Consensus 139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~ 216 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVIN 216 (339)
T ss_pred CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEE
Confidence 999999999999999999996 56899999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCC
Q 016978 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGG 324 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 324 (379)
..+ .+..+.+++. +|+++|+++ +.+++.+++.|+++ |+++++|.........++.+.++ +++++.|+..++
T Consensus 217 ~~~--~~~~~~~~~~----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~ 288 (339)
T COG1064 217 SSD--SDALEAVKEI----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT 288 (339)
T ss_pred cCC--chhhHHhHhh----CcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC
Confidence 775 6777777664 999999999 79999999999997 99999999742233445555444 499999998875
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
+.+.++++++..++++++. +.+.++++|+++||+.|.+++.. |+||.+.
T Consensus 289 ---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 289 ---RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred ---HHHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 4799999999999999965 44799999999999999999987 9999875
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-61 Score=420.05 Aligned_cols=342 Identities=27% Similarity=0.411 Sum_probs=300.6
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCC---CCCcccccceeEEEEEeCCCCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~---~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
.+|+|+++.++++ +.+.++|.|++ .|+||+|++.++|||++|++++....... +.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4789999999999 99999999987 99999999999999999999998765333 6899999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
++++||||++.|..+|..|++|++|.+|+|.+..+. +..+.+| ++++|++.++++|+|+
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G------------------~la~y~~~~~dfc~KL 140 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG------------------TLAEYYVHPADFCYKL 140 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC------------------ceEEEEEechHheeeC
Confidence 999999999999999999999999999999998863 3334566 9999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
||++|++++|++. +++++||| .+++++++|++|||+|||++|+.+...|+++|+.+|++++..++|+++++++|++.+
T Consensus 141 Pd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 141 PDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT 218 (354)
T ss_pred CCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence 9999999999987 69999998 488999999999999999999999999999999999999999999999999999987
Q ss_pred eCCCCCC--chHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEe
Q 016978 244 VNPKDHD--KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKG 319 (379)
Q Consensus 244 ~~~~~~~--~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~ 319 (379)
.+..... ..+.+.+...... .+|+.|||+|....++.++..++.+ |++++.|+... ..+++..... +++.++|
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~~--~~~fpi~~v~~kE~~~~g 295 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGAE--EIQFPIIDVALKEVDLRG 295 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCCC--ccccChhhhhhheeeeee
Confidence 7665422 3444555555443 6999999999999999999999996 99999988543 5555555443 3888888
Q ss_pred eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEecCC
Q 016978 320 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC--LRCVLKMQD 379 (379)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~--~Kvvi~~~~ 379 (379)
++-+. ..+++..++++++|++.+.++|++.|+++++.+||+.++.++. .|++|..++
T Consensus 296 ~fry~---~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 296 SFRYC---NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred eeeec---cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 76442 2489999999999999999999999999999999999998884 499998764
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=411.44 Aligned_cols=349 Identities=30% Similarity=0.463 Sum_probs=309.5
Q ss_pred CCCCCccccceeeeeecCCC--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEe
Q 016978 1 MSTEGQVITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESV 78 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~v 78 (379)
|+++..|.+.+++.+..+++ ++++.+++.|+++++||+|+|+|+|||++|++.+.|+++..++|.++|||.+|+|+++
T Consensus 1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence 77888899999999999999 5777999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCEE-eecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 79 GEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 79 G~~v~~~~~Gd~V-~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
|++|++|++|||| +-+...+|..|.+|+++++++|++... .+.|+. .|| ..++|+|++|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~-~DG-------------t~~~ggf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVY-HDG-------------TITQGGFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccc-cCC-------------CCccCccceeEEEee
Confidence 9999999999999 455678999999999999999996332 234555 666 455679999999999
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHH
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAK 236 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~ 236 (379)
.++++||++++.+.||.+.|+..|.|.+| ...++.||++|-|.|+|++|.+++|+|++||. +|+++++++ +|.+.++
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK 223 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence 99999999999999999999999999985 66788999999999997799999999999999 999999987 6777888
Q ss_pred hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-cc
Q 016978 237 NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GR 315 (379)
Q Consensus 237 ~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~ 315 (379)
.||++.+++..+ +.++.+.+.+.+++++|.|.+. ....+..++.+++.+ |++|++|.+.. ++.++.+++.. .+
T Consensus 224 ~LGAd~fv~~~~-d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~--~~~~~~~~lil~~~ 297 (360)
T KOG0023|consen 224 SLGADVFVDSTE-DPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK--PLKLDTFPLILGRK 297 (360)
T ss_pred hcCcceeEEecC-CHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC--cccccchhhhcccE
Confidence 899999988873 3899999999988888888876 345689999999996 99999999754 66666666555 88
Q ss_pred EEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 316 VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 316 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
+|.|+..++. .+.++++++..++.+... .+..+++++++||+++++++.. |.||.++
T Consensus 298 ~I~GS~vG~~---ket~E~Ldf~a~~~ik~~---IE~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 298 SIKGSIVGSR---KETQEALDFVARGLIKSP---IELVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred EEEeeccccH---HHHHHHHHHHHcCCCcCc---eEEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 8999988854 689999999999999865 5888999999999999999987 9999864
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=427.11 Aligned_cols=374 Identities=54% Similarity=1.032 Sum_probs=310.0
Q ss_pred CCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCC
Q 016978 4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+++|++|||+++.++++++.++++|.|+|+++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++|+++
T Consensus 5 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v 84 (381)
T PLN02740 5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV 84 (381)
T ss_pred cccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence 346789999999999988999999999999999999999999999999999887542 3578999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCcccccc--CCCcccccCCcceeeeeEEecCcce
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
+++++||||++.+..+|+.|.+|.+++++.|.+....+..+..+.+|...+.. .+....+....|+|+||+.+|.+.+
T Consensus 85 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~ 164 (381)
T PLN02740 85 EDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV 164 (381)
T ss_pred CcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence 99999999999999999999999999999999865321100000011000000 0111122233579999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+++|+++++++++.+++++.|||+++++.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+
T Consensus 165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 165 VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred EECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 99999999999999999999999988888899999999999999999999999999999679999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEee
Q 016978 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGT 320 (379)
Q Consensus 241 ~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~ 320 (379)
++++++++.+.++.+.+++.+.+++|++||++|.+..+..++.++++++|+++.+|.......+++.+..+++++++.|+
T Consensus 245 ~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~ 324 (381)
T PLN02740 245 TDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITGS 324 (381)
T ss_pred cEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeEEEE
Confidence 99998765223577888887766899999999998889999999988339999999865433344444434457888888
Q ss_pred ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 321 AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
..+.+....+++++++++.++++++.++++++|+|+|+++|++.+.+++..|++|++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 325 VFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred ecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 776554446789999999999999888899999999999999999988877999874
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=423.25 Aligned_cols=367 Identities=66% Similarity=1.154 Sum_probs=305.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++...+++++++++|.|+|.++||+|||.++++|++|++.+.|..+...+|.++|||++|+|+++|++++++++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 89999999888899999999999999999999999999999999988766556799999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
||++.+..+|+.|.+|..+++++|.+.....++|.. .+|...+...|...++..+.|+|+||+.+|.+.++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM-PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccc-cCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 999999999999999999999999976533233332 2221111111222122223479999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++++++++.+||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++.+++|+++++++|+++++++.+.
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~ 240 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY 240 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccccc
Confidence 99999999999999998888899999999999999999999999999999779999999999999999999999987643
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcccc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRS 329 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 329 (379)
..++.+.+++.+++++|++|||+|++..+..+++++++++|+++.+|.......+++.+..++.+..+.++.++......
T Consensus 241 ~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 320 (368)
T TIGR02818 241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRT 320 (368)
T ss_pred chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccceEEEeeccCCCcHH
Confidence 35577778888777899999999987889999999988339999999864333344444444444456666554433446
Q ss_pred cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 330 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 330 ~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+++++++++.++++++.++++++|+|+|+++|++.+.+++..|++|++
T Consensus 321 ~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 321 ELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred HHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 789999999999999888899999999999999999888777999975
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=419.37 Aligned_cols=367 Identities=78% Similarity=1.284 Sum_probs=308.4
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
+|||+++.+.+++++++++|.|+|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++++++|
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG 81 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG 81 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence 68999999888889999999999999999999999999999999998876655789999999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+..+|+.|.+|++++++.|.+.....+.|.. .+|...+.-+|...+++.+.|+|+||+.++.+.++++|++++
T Consensus 82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~ 160 (368)
T cd08300 82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLM-PDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP 160 (368)
T ss_pred CEEEEcCCCCCCCChhhcCCCcCcCCCcccccccccc-CCCccccccCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence 9999999999999999999999999876432222222 222111112233334444567999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++++++++++.+||+++++.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++++
T Consensus 161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~ 240 (368)
T cd08300 161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD 240 (368)
T ss_pred hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence 99999999999999998888889999999999999999999999999999967999999999999999999999998875
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCccc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 328 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (379)
.+.++.+.+++.+++++|+|||++|++..+..+++++++++|+++.+|.......+++.+..+..+..+.++..+.+...
T Consensus 241 ~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (368)
T cd08300 241 HDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAFGGWKSR 320 (368)
T ss_pred cchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhhcCeEEEEEecccCcH
Confidence 32368888888887799999999998778999999998834999999976432233444444444556667666655556
Q ss_pred ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 329 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
.+++++++++.++++++.++++++|+|+|+++|++.+.+++..|++|+
T Consensus 321 ~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 321 SQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred HHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 789999999999999988889999999999999999998877799985
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=418.20 Aligned_cols=369 Identities=65% Similarity=1.165 Sum_probs=311.5
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
++|||+++.+++++++++++|.|+|+++||+||+.+++||++|++.+.|..+...+|.++|||++|+|+++|++++++++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 37999999998888999999999999999999999999999999999887665577999999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||||++.+..+|+.|.+|..++++.|.........|....++...+...|...+++.+.|+|+||+.++.+.++++|+++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~ 160 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA 160 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence 99999999999999999999999999986532222221111111122223333444456799999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++++++.+.+||+++++..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.++++.
T Consensus 161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~ 240 (369)
T cd08301 161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK 240 (369)
T ss_pred CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEccc
Confidence 99999999989999999888888999999999999999999999999999987799999999999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (379)
+.+.++.+.+++.+++++|++||++|....+..++.++++++|+++.+|.......+++.+..+++++++.+++.+.+..
T Consensus 241 ~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 320 (369)
T cd08301 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKP 320 (369)
T ss_pred ccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCCh
Confidence 53245777788877668999999999888899999999992299999998654334555554445688898887766655
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
+.+++++++++.++++++.++++++|||+|+++|++.+.+++..|++|.
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 369 (369)
T cd08301 321 KTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH 369 (369)
T ss_pred HHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence 5678999999999999988888999999999999999999988899874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=415.96 Aligned_cols=360 Identities=41% Similarity=0.714 Sum_probs=301.4
Q ss_pred ceeeeeecCCC--------CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 10 CKAAVAWEPNK--------PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 10 ~~a~~~~~~~~--------~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
|||+++.++|. .++++++|.|+|+++||+|||.+++||++|++.+.|..+ ..+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence 79999998763 389999999999999999999999999999999988754 346899999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
++++++||||++.+...|+.|.+|+.++++.|.........|.. .+|.-.+..++-...+..+.|+|+||+.+|++.++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTL-LSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCcccccccccc-ccCcccccccCcccccccCcccceeeEEecccceE
Confidence 99999999999988889999999999999999876543222221 11100000111111112234699999999999999
Q ss_pred ecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
++|+++++++|+++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999989999999888888999999999999999999999999999996799999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEee
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGT 320 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~ 320 (379)
+++++.+ .++.+.+++.+++++|++|||+|....+..++++++++ |+++.+|........+++...++. ++++.++
T Consensus 239 ~~i~~~~--~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~ 315 (371)
T cd08281 239 ATVNAGD--PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKGS 315 (371)
T ss_pred eEeCCCc--hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEEE
Confidence 9998876 67888888887778999999999888899999999996 999999975432334555544443 8889988
Q ss_pred ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEE
Q 016978 321 AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCV 374 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvv 374 (379)
+.+.+....+++++++++.++++++.++++++|+|+|+++||+.+.+++.. |+|
T Consensus 316 ~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi 370 (371)
T cd08281 316 YMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI 370 (371)
T ss_pred ecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 776554456789999999999999888899999999999999999999887 544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=408.52 Aligned_cols=356 Identities=37% Similarity=0.625 Sum_probs=300.7
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
+|||+++.+++++++++++|.|+|++++|+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence 699999999998899999999999999999999999999999999888653 2478899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+..+|+.|.+|.+++.++|....... ......+ |.......+.|+|+||+.+|++.++++|++++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~--------g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~ 150 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTD--------GTELSPALGIGAFAEKTLVHAGQCTKVDPAAD 150 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCccccc-ccccccc--------CcccccccccccccceEEEehhheEECCCCCC
Confidence 99999999999999999999999998532110 0000000 10000011246999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++|+++++.+.++|+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++++
T Consensus 151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~ 230 (358)
T TIGR03451 151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG 230 (358)
T ss_pred hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC
Confidence 99999999999999988888888999999999999999999999999999966999999999999999999999998876
Q ss_pred CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCc
Q 016978 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK 326 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 326 (379)
.++.+.+++.+++ ++|++|||+|++..+..++.+++++ |+++.+|........++++..++. +.++.+++.+...
T Consensus 231 --~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 307 (358)
T TIGR03451 231 --TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCL 307 (358)
T ss_pred --cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCC
Confidence 6788888888887 8999999999878899999999996 999999986433334455434333 7788877654333
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
...++++++++++++++++.++++++||++|+++|++.+++++..|++|.+
T Consensus 308 ~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~~ 358 (358)
T TIGR03451 308 PERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVEL 358 (358)
T ss_pred cHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEeC
Confidence 456788999999999999888899999999999999999988877888763
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-54 Score=407.84 Aligned_cols=365 Identities=54% Similarity=1.020 Sum_probs=299.7
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
..|||+++.++++.++++++|.|+|+++||+|||.++++|++|++.+.+.. .+|.++|||++|+|+++|++++++++
T Consensus 11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~ 87 (378)
T PLN02827 11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK 87 (378)
T ss_pred ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence 679999999988779999999999999999999999999999999887642 35789999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.+..+|+.|.+|+++++++|.+.... ..|....++...+...|....++...|+|+||+.+|++.++++|+++
T Consensus 88 GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l 166 (378)
T PLN02827 88 GDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA 166 (378)
T ss_pred CCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence 99999999999999999999999999874210 00100000000000011111111124799999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++.+++++.++|+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++++++
T Consensus 167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~ 246 (378)
T PLN02827 167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPN 246 (378)
T ss_pred CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEccc
Confidence 99999999888889998877778899999999999999999999999999996688898899999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc--ceeeeccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP--FQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~ 325 (379)
+.+.++.+.+++.+.+++|++||++|....+..+++.+++++|+++.+|..... ..+.. ..+.+++++.|+..+.+
T Consensus 247 ~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~--~~~~~~~~~~~~~~~i~g~~~~~~ 324 (378)
T PLN02827 247 DLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK--PEVSAHYGLFLSGRTLKGSLFGGW 324 (378)
T ss_pred ccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC--ccccccHHHHhcCceEEeeecCCC
Confidence 522467778888876689999999999777999999999933999999986432 22222 22345888888877655
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
....++.+++++++++++++.++++++|+|+|+++|++.+.+++..|+||++.
T Consensus 325 ~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~ 377 (378)
T PLN02827 325 KPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMP 377 (378)
T ss_pred chhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEec
Confidence 44567899999999999998778999999999999999999988789999875
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=403.14 Aligned_cols=365 Identities=62% Similarity=1.099 Sum_probs=305.9
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
+.|||+++.+.+++++++++|.|++.++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 3589999998888899999999999999999999999999999999988654 457899999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.+..+|+.|.+|..+.+++|++.... ..|.. .++...+..+|...+++.+.|+|+||+.++.+.++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLM-PDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccc-cCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999999999999999999999999986532 11211 11111111223333334456799999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++.
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~ 237 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence 99999999999999999887888999999999999999999999999999997799999999999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (379)
+.+.++.+.+++.+.+++|++|||+|+...+..+++++++++|+++.+|.... ...++++..++.++++.+++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~ 316 (365)
T cd08277 238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPG-AELSIRPFQLILGRTWKGSFFGGFKS 316 (365)
T ss_pred cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCc-cccccCHhHHhhCCEEEeeecCCCCh
Confidence 53345677777777678999999999878889999999873399999998542 23344444444478888887766554
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
..++++++++++++.+++.++++++|+++|+++|++.+.+++..|++|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 317 RSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred HHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 5678999999999999988889999999999999999998886699874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=395.22 Aligned_cols=337 Identities=28% Similarity=0.438 Sum_probs=290.2
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++. ++++++|.|+|.++||+||+.++++|++|++.+.+.... ...|.++|||++|+|+++|++++.+++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999998776 999999999999999999999999999999988776432 2357899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+..+|+.|.+|+.++++.|.+... .+|.. .+ |+|+||+.+|.+.++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~-~~------------------G~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWN-RD------------------GGHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccC-CC------------------CcceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999987542 23322 33 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++|+++++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~ 217 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ 217 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc
Confidence 999999999999999986 5678899999999999999999999999999954999999999999999999999998876
Q ss_pred CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcc
Q 016978 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (379)
.+ .+.+.+.+++ ++|++|||+|+...+..++++++++ |+++.+|.... ..+......+.+++++.+++...
T Consensus 218 --~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~--- 289 (339)
T cd08239 218 --DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFS--- 289 (339)
T ss_pred --ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCC---
Confidence 45 6677777777 8999999999987778999999996 99999997542 22222112223478888876543
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
..+++++++++.++++.+.++++++|+++|+++|++.+.+++..|+||+|
T Consensus 290 ~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 290 VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 35789999999999999888899999999999999999887756999975
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=386.06 Aligned_cols=336 Identities=20% Similarity=0.296 Sum_probs=277.5
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeecccccccccc-CCCC--CCCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDP--EGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
..+|+++++++++ ++++++|.| +.++||||||.++|||++|++.+. |..+ ..++|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 4689999999988 999999987 589999999999999999999875 3332 2357999999999999999 7889
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||||++.+..+|+.|++|++++++.|.+... +|....+ ....|+|+||++++++.++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEECC
Confidence 9999999999999999999999999999997553 2321000 0012599999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++++++.. .++++||+++. .....+|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus 142 ~~l~~~~aa~~-~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 142 EKADEKVMAFA-EPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCHHHHHhh-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence 99998776644 47789999864 45667899999999999999999999999997799999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
++++ .++.+..+ . .+++|++|||+|++..+..++++++++ |+++.+|.... ..++++..++ +++++.++...
T Consensus 220 ~~~~--~~~~~~~~-~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~~~i~g~~~~ 292 (343)
T PRK09880 220 NPQN--DDLDHYKA-E-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGGA--PPEFPMMTLIVKEISLKGSFRF 292 (343)
T ss_pred cCCc--ccHHHHhc-c-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CCccCHHHHHhCCcEEEEEeec
Confidence 8876 44443322 1 236999999999977899999999996 99999997543 2334444333 37788776532
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..++++++++++++++++.++++++|+++|+++|++.+.+++.. |++|.+
T Consensus 293 ----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 293 ----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred ----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 35799999999999999888899999999999999999888765 999874
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=383.03 Aligned_cols=341 Identities=28% Similarity=0.383 Sum_probs=280.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCc-ccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC-ILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|+++++..++....+.+.+.|.+.++||+|||.++|||++|++.+++..+..+.|. ++|||++|+|+++| .++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 67777777776344777777778899999999999999999999999877776666 99999999999999 77889999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccc--cceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec-CC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATG--AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-DP 165 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~--~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-P~ 165 (379)
|||++.+..+|+.|.+|+.+.++.|.+...... ++.. .+| +|+||+.+|.+.++++ ||
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~-~~G------------------~~aEyv~vp~~~~~~~~pd 140 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG-IDG------------------GFAEYVRVPADFNLAKLPD 140 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCC-CCC------------------ceEEEEEeccccCeecCCC
Confidence 999999999999999999999999996543211 1111 344 9999999997655554 88
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEe
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV 244 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~ 244 (379)
++ +.+++++..++.++|++........++++|+|+|+|++|++++++|+.+|+.+||+++.+++|++++++ .|++.++
T Consensus 141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~ 219 (350)
T COG1063 141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV 219 (350)
T ss_pred CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee
Confidence 88 555556666899997764455556666699999999999999999999999999999999999999999 6666666
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeec
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAF 322 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~ 322 (379)
+..+ .+....+.+.+.+ ++|++|||+|...++.+++++++++ |+++.+|.+..... .++...+ .+++++.|+..
T Consensus 220 ~~~~--~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~ 295 (350)
T COG1063 220 NPSE--DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLR 295 (350)
T ss_pred cCcc--ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccC
Confidence 6554 3677788889988 9999999999999999999999996 99999999754432 3333333 34889988843
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-e-EEEEec
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-L-RCVLKM 377 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~-~-Kvvi~~ 377 (379)
. ....+++.+++++++|++.+.+++++.++++|+++||+.+.+++. . |++|++
T Consensus 296 ~--~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 296 P--SGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred C--CCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 2 233689999999999999999999999999999999999998654 4 999874
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=387.42 Aligned_cols=346 Identities=24% Similarity=0.357 Sum_probs=273.6
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCC-------CCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQ-------AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
-|||+++.++++ ++++++|.|+|+ ++||||||.++|||++|++.+.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence 489999999987 999999999874 68999999999999999999988653 346899999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCc---cccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA---TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~---~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
|+++++||||++.+..+|+.|.+|++++++.|.+.... ..+|.... | .-.|+|+||+.+|..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~--------------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDM-G--------------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceeccccc-C--------------CCCCceEEEEEechh
Confidence 99999999999999999999999999999999975321 01221100 0 002599999999964
Q ss_pred --ceEecCCCCCc----cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 016978 159 --SVAKIDPQAPL----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (379)
Q Consensus 159 --~~~~iP~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~ 232 (379)
.++++|++++. ..++++.+.+.++|+++ .++++++|++|||.|+|++|++++|+|+.+|++.|++++.+++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999998754 34667777889999986 567899999999998999999999999999996677677888999
Q ss_pred HHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCH--------------HHHHHHHHHhccCCceEEEEcc
Q 016978 233 DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV--------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 233 ~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~--------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++++++|++.+....+ .++.+.+.+.+.+ ++|++|||+|.+ .++++++++++++ |+++.+|.
T Consensus 224 ~~a~~~Ga~~v~~~~~--~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~ 300 (393)
T TIGR02819 224 AQARSFGCETVDLSKD--ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGL 300 (393)
T ss_pred HHHHHcCCeEEecCCc--ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeee
Confidence 9999999975433333 4567778888777 899999999985 4799999999997 99999998
Q ss_pred CCCCcccc-----------cCccee-eeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHH
Q 016978 298 AASGQEIS-----------TRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVT-HNMTLGEINEAFRY 364 (379)
Q Consensus 298 ~~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~~~~~i~~A~~~ 364 (379)
+....... +..... .++.++.+.. ......+.++++++.++++++.++++ ++|||+|+++||+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~ 377 (393)
T TIGR02819 301 YVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAE 377 (393)
T ss_pred cCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHH
Confidence 63221111 111111 1133444321 11112346899999999999887777 78999999999999
Q ss_pred HhcCCeeEEEEecC
Q 016978 365 MHGGDCLRCVLKMQ 378 (379)
Q Consensus 365 ~~~~~~~Kvvi~~~ 378 (379)
+.+++..|++|+++
T Consensus 378 ~~~~~~~Kvvi~~~ 391 (393)
T TIGR02819 378 FDAGAAKKFVIDPH 391 (393)
T ss_pred HhhCCceEEEEeCC
Confidence 99887679999874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=375.59 Aligned_cols=315 Identities=26% Similarity=0.363 Sum_probs=264.9
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCC-CCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++.+.+.| ++++|+|.|+|+++||||||.|++||+.|++.+.|. .+..++|+++|.|++|+|+++|++|+.++
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 789999998887 889999999999999999999999999999999997 34447899999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||+.... .| + .|+|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~~-~~---------------------------~------------------~G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALGG-VG---------------------------R------------------DGGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEccC-CC---------------------------C------------------CCcceeEEEecHHHceeCCCC
Confidence 9999986520 00 1 249999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++||+++++++|||+++.+..++++|++|||+|+ |++|.+++|||+++|+ +++++.+++++.++++++|++++++
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN 193 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEc
Confidence 9999999999999999999999899999999999986 9999999999999998 6777767788888999999999999
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
+++ .++.+.+++++++ ++|+|||+.|+ +.+..++.+++++ |+++.+|.........++...+.. .....+....
T Consensus 194 y~~--~~~~~~v~~~t~g~gvDvv~D~vG~-~~~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 269 (326)
T COG0604 194 YRE--EDFVEQVRELTGGKGVDVVLDTVGG-DTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG 269 (326)
T ss_pred CCc--ccHHHHHHHHcCCCCceEEEECCCH-HHHHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecce
Confidence 988 7799999999999 99999999999 6688899999997 999999986532333444333332 5555555544
Q ss_pred CC---cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC-Cee-EEEEec
Q 016978 324 GF---KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DCL-RCVLKM 377 (379)
Q Consensus 324 ~~---~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~-~~~-Kvvi~~ 377 (379)
.. ...+.+.++.+++.+|++++. ++.+|||+|..+|......+ +.. |+||++
T Consensus 270 ~~~~~~~~~~~~~l~~~~~~g~l~~~--i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 270 SRDPEALAEALAELFDLLASGKLKPV--IDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred ecchHHHHHHHHHHHHHHHcCCCcce--eccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence 22 123456779999999999954 78999999966665544433 554 999974
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=375.36 Aligned_cols=338 Identities=24% Similarity=0.355 Sum_probs=276.6
Q ss_pred CccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 016978 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
.+|+.++++.+.+..+++.+.+++.|+|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~ 87 (360)
T PLN02586 8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK 87 (360)
T ss_pred hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence 45566777777776666999999999999999999999999999999999887654567899999999999999999999
Q ss_pred cCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCcc-cc---ceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGAT-GA---GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 85 ~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~-~~---g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
+++||+|++.+. .+|+.|.+|..+.++.|.+..... .. |.. .+ |+|+||+.+|.+.
T Consensus 88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~ 148 (360)
T PLN02586 88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-NY------------------GGYSDMIVVDQHF 148 (360)
T ss_pred cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCc-CC------------------CccceEEEEchHH
Confidence 999999986554 579999999999999999754310 00 111 12 4999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHhc
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNF 238 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~~l 238 (379)
++++|+++++++|+.++++..|+|+++.....+++|++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++
T Consensus 149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~ 227 (360)
T PLN02586 149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL 227 (360)
T ss_pred eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC
Confidence 999999999999999999999999987666667899999999999999999999999999 77777666554 5677889
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVW 317 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i 317 (379)
|+++++++.+ . +.+++.+. ++|+|||++|....+..++++++++ |+++.+|.... ...+++..++. +..+
T Consensus 228 Ga~~vi~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~--~~~~~~~~~~~~~~~i 298 (360)
T PLN02586 228 GADSFLVSTD--P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEK--PLELPIFPLVLGRKLV 298 (360)
T ss_pred CCcEEEcCCC--H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC--CCccCHHHHHhCCeEE
Confidence 9999987654 2 23444443 6999999999877899999999996 99999997532 23444444333 5666
Q ss_pred EeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.++..+. ..+++++++++.++++++. + ++|+|+|+++||+.+.+++.. |+|+++
T Consensus 299 ~g~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 299 GGSDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred EEcCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6665442 3578999999999999853 4 689999999999999999875 999986
|
|
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=371.91 Aligned_cols=368 Identities=56% Similarity=0.963 Sum_probs=303.1
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
..+||++++.+++++++++++|.|++.+++|+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.++
T Consensus 5 ~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~ 83 (373)
T cd08299 5 VIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK 83 (373)
T ss_pred cceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence 35699999999888899999999999999999999999999999999988753 34688999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+..+|+.|.+|.+++++.|++.......|.. .++...+-.+|...+++.+.|+|+||++++.+.++++|++
T Consensus 84 ~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~ 162 (373)
T cd08299 84 PGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLM-QDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA 162 (373)
T ss_pred CCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccc-cCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence 999999998899999999999999999976532111221 2222222233444445545689999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++++++++++.+||+++...+++++|++|||+|+|++|++++++|+.+|+.+|+++++++++++.++++|++++++.
T Consensus 163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~ 242 (373)
T cd08299 163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP 242 (373)
T ss_pred CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence 99999999999999999988888899999999999999999999999999998679999999999999999999999987
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHh-ccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECC-HKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
.+...++.+.+.+.+.+++|+++||+|++..+..++..+ +++ |+++.+|.......+++.+..+..+.++.+++.+.+
T Consensus 243 ~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 321 (373)
T cd08299 243 QDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGGW 321 (373)
T ss_pred cccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHHHhcCCeEEEEEecCC
Confidence 652234677777776668999999999877788877765 464 999999976433344555433344677888777665
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
....++.++++.+.++.+.+.+++.+.|+++++++|++.+.+.+..|+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 322 KSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred ccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 5556788888888888877777788999999999999999987767988864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=370.76 Aligned_cols=338 Identities=22% Similarity=0.339 Sum_probs=280.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++. ++++++|.|+| .++||+|||.++++|++|+..+.+.. ...+|.++|||++|+|+++|++++++++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 78999999886 99999999987 69999999999999999987532211 12358899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+..+|+.|.+|..+.++.|..... +|.. .+ |+|+||+.+|.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSR-RD------------------GGNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccC-CC------------------CccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999986442 2221 23 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++|+++. .+.++|++ ++...+++|++|||+|+|++|++++|+|+.+|++.|++++++++++++++++|+++++++++
T Consensus 137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~ 214 (347)
T PRK10309 137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE 214 (347)
T ss_pred HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc
Confidence 99998774 45567877 46678899999999999999999999999999955889999999999999999999998765
Q ss_pred CCchHHHHHHHhcCC-Ccc-EEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccC-cceee-eccEEEeeecCC
Q 016978 249 HDKPIQQVLVDLTDG-GVD-YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR-PFQLV-TGRVWKGTAFGG 324 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d-~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~ 324 (379)
.+ .+.+.+.+.+ ++| ++|||+|...++..++++++++ |+++.+|....+..++.. ...++ +++++.+++.+.
T Consensus 215 --~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 290 (347)
T PRK10309 215 --MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNY 290 (347)
T ss_pred --cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccc
Confidence 33 4456666666 888 9999999988899999999996 999999976432222211 11223 478888876542
Q ss_pred Cc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 325 FK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 325 ~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.. ...++++++++++++++++.++++++|+|+|+++|++.+.+++.. |+|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred cCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 21 235788999999999999888999999999999999999988865 999986
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=368.31 Aligned_cols=332 Identities=24% Similarity=0.338 Sum_probs=270.9
Q ss_pred eeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEE
Q 016978 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (379)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V 91 (379)
++...+.++++.+.+++.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|++++++++||||
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV 88 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV 88 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence 34444444458888999999999999999999999999999998876444578999999999999999999999999999
Q ss_pred eecCCc-CCCCCccccCCCCCCCCCccCcc----ccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 92 IPCYQA-ECRECKFCKSGKTNLCGKVRGAT----GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 92 ~~~~~~-~~~~~~~c~~~~~~~c~~~~~~~----~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
++.+.. +|+.|.+|+++++++|.+..... ..|.. . .|+|+||+.+|++.++++|++
T Consensus 89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~------------------~G~~aey~~v~~~~~~~lP~~ 149 (375)
T PLN02178 89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR-N------------------QGGYSDVIVVDHRFVLSIPDG 149 (375)
T ss_pred EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCc-C------------------CCccccEEEEchHHeEECCCC
Confidence 876654 69999999999999999864310 01111 1 249999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHhcCCceEe
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFV 244 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-~~~~~~~lg~~~v~ 244 (379)
++++++++++++..|+|+++..... .++|++|||.|+|++|++++|+|+.+|+ +|++++.+++ +.++++++|+++++
T Consensus 150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFL 228 (375)
T ss_pred CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEE
Confidence 9999999999999999998754432 3689999999999999999999999999 7888876654 57888999999998
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
++.+ . +.+.+.+. ++|++|||+|.+..+..++++++++ |+++.+|.... ...+++..++ +++++.++..+
T Consensus 229 ~~~~--~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~~--~~~~~~~~~~~~~~~i~g~~~~ 299 (375)
T PLN02178 229 VTTD--S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPEK--PLDLPIFPLVLGRKMVGGSQIG 299 (375)
T ss_pred cCcC--H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCCC--CCccCHHHHHhCCeEEEEeCcc
Confidence 8654 2 34445443 7999999999977889999999996 99999997533 2344444443 37788887654
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
. ..+++++++++++|++++. + +.|||+|+++|++.+.+++.. |+|+++.
T Consensus 300 ~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~~ 349 (375)
T PLN02178 300 G---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDVA 349 (375)
T ss_pred C---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEec
Confidence 3 3578999999999999854 4 679999999999999998875 9999863
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=365.81 Aligned_cols=333 Identities=29% Similarity=0.446 Sum_probs=281.1
Q ss_pred eeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC-CCCCCCcccccceeEEEEEeCCCCCCcCCCCEE
Q 016978 13 AVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (379)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V 91 (379)
+++.+++++++++++|.|+++++||+|||.++++|++|++.+.+.. +..++|.++|||++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 4677788779999999999999999999999999999998874433 233568999999999999999999887 99999
Q ss_pred eecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC------
Q 016978 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------ 165 (379)
Q Consensus 92 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~------ 165 (379)
++.+..+|+.|.+|..+++++|.+... .|.. .+ |+|+||+.+|.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGND-MQ------------------GGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcC-CC------------------CcccceEEechHHeEECCccccccc
Confidence 999999999999999999999986543 2221 23 4999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++++++.+++++.++|+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++++++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEec
Confidence 8999999988889999999864 5789999999999999999999999999999 7999999999999999999999988
Q ss_pred CCCCC-chHHHHHHHhcCC-Ccc----EEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEE
Q 016978 246 PKDHD-KPIQQVLVDLTDG-GVD----YSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWK 318 (379)
Q Consensus 246 ~~~~~-~~~~~~i~~~~~~-g~d----~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~ 318 (379)
+.+.+ .++.+.+++.+++ ++| ++|||+|+...+..++++++++ |+++.+|..... .+++...++. +.++.
T Consensus 217 ~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~~~ 293 (349)
T TIGR03201 217 PKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAK--TEYRLSNLMAFHARAL 293 (349)
T ss_pred CccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCCC--cccCHHHHhhcccEEE
Confidence 76522 3577778888877 886 8999999988888999999996 999999986432 2333333333 56777
Q ss_pred eeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 319 GTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.+.. ...+++++++++.++++++.++++ .|+|+|+++||+.+.+++.. |+++++
T Consensus 294 g~~~~---~~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 294 GNWGC---PPDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred EEecC---CHHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence 76543 235789999999999999877765 79999999999999998876 988863
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=364.80 Aligned_cols=364 Identities=56% Similarity=0.993 Sum_probs=310.8
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
+||+++.+.++++.++++|.|.+.+++|+||+.++++|++|++.+.+..+ ..+|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47899999887799999999999999999999999999999999888654 34678999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+..+|+.|.+|+.+.+++|+........|.. .+|...+--+|+..+|+.+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLM-SDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccc-cCCcceeeccCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999999899999999999999999887754444433 4444444446777778778899999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++.+++++.+||+++.+.+++++|++|||+|+|++|++++|+|+.+|+..|++++++++++++++++|++++++..+.
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~ 238 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQ 238 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccc
Confidence 99999999999999988888899999999999889999999999999999668888889999999999999999987662
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhc-cCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCccc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH-KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 328 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (379)
+.++.+.+++.+.+++|++||++|....+..++++++ ++ |+++.+|.........++...+.++.++.++++..+...
T Consensus 239 ~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 317 (365)
T cd05279 239 DKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGGWKSK 317 (365)
T ss_pred cchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHHhcCCeEEEEeccCCchH
Confidence 2267778888775599999999998788999999999 96 999999875322344555545444677778776666666
Q ss_pred ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 329 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
..+.++++++.++.+.+.+++.++|+++|+++|++.+.+++..|++|+
T Consensus 318 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~ 365 (365)
T cd05279 318 DSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT 365 (365)
T ss_pred hHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 788999999999999877678899999999999999988777788774
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=366.67 Aligned_cols=334 Identities=23% Similarity=0.338 Sum_probs=263.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC---CCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG---LFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~---~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++..++.++.++++|.|+|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|++ ++++
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 6888888654349999999999999999999999999999999998875322 46789999999999999999 9999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+...|+.|.+|..+++++|...... ..|....+ |+|+||+.+|++.++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~------------------G~~aey~~~~~~~~~~~P~~ 140 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH------------------GFMREYFVDDPEYLVKVPPS 140 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC------------------ccceeEEEeccccEEECCCC
Confidence 999999998889999999999999999864421 11211122 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhh------hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHHh
Q 016978 167 APLDKVCLLGCGVPTGLGAVW------NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKN 237 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~------~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~---~~~~~~~~~~ 237 (379)
++ +. +++..++.++++++. ...+.++|++|||+|+|++|++++|+|+++|+ +|+++++ +++|++++++
T Consensus 141 ~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 141 LA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 98 43 344445555444331 22336789999999999999999999999999 7999887 6889999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccC----ccee-e
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR----PFQL-V 312 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~----~~~~-~ 312 (379)
+|++. +++.+ .++.+ . +. .+++|+||||+|++..+..++++++++ |+++.+|........+++ ...+ .
T Consensus 218 ~Ga~~-v~~~~--~~~~~-~-~~-~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T cd08230 218 LGATY-VNSSK--TPVAE-V-KL-VGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVL 290 (355)
T ss_pred cCCEE-ecCCc--cchhh-h-hh-cCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhh
Confidence 99987 45544 33333 2 11 248999999999977899999999996 999999986542333443 1222 3
Q ss_pred eccEEEeeecCCCcccccHHHHHHHHHcCCC----CCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 313 TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI----KVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+++++.|+.... ..+++++++++.++.+ .+.++++++|+++|+++|++.+.++. .|+||+|
T Consensus 291 k~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~ 355 (355)
T cd08230 291 GNKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW 355 (355)
T ss_pred cCcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence 478888875432 3578899999988773 25567899999999999999887654 5999975
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=361.19 Aligned_cols=347 Identities=22% Similarity=0.291 Sum_probs=282.5
Q ss_pred CCCCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCC
Q 016978 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 80 (379)
|.+......++|+++.++++++.+++++.|+|+++||+|||.++++|++|++.+.|..+...+|.++|||++|+|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~ 80 (357)
T PLN02514 1 MGSLEAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGS 80 (357)
T ss_pred CCccCCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECC
Confidence 44444555689999999999999999999999999999999999999999999988765556789999999999999999
Q ss_pred CCCCcCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 81 GVTEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
+++++++||+|++.+. .+|+.|.+|.++.++.|.........++ ..| ....|+|+||+.+|.+.
T Consensus 81 ~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~--~~g-------------~~~~G~~aey~~v~~~~ 145 (357)
T PLN02514 81 DVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY--TDG-------------KPTQGGFASAMVVDQKF 145 (357)
T ss_pred CcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc--cCC-------------ccCCCccccEEEEchHH
Confidence 9999999999986654 4799999999999999987532100000 001 11135999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhc
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNF 238 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~l 238 (379)
++++|+++++++++.+++++.|||+++.+....++|++|+|+|+|++|++++|+|+.+|+ ++++++.++++++. ++++
T Consensus 146 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~ 224 (357)
T PLN02514 146 VVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHL 224 (357)
T ss_pred eEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhc
Confidence 999999999999999999999999987666666899999999999999999999999999 67877777766654 4679
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVW 317 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i 317 (379)
|+++++++.+ . ..+.+.+. ++|++|||+|....+..++++++++ |+++.+|.... ..++.+..++ +++++
T Consensus 225 Ga~~~i~~~~--~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i 295 (357)
T PLN02514 225 GADDYLVSSD--A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT--PLQFVTPMLMLGRKVI 295 (357)
T ss_pred CCcEEecCCC--h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC--CCcccHHHHhhCCcEE
Confidence 9988876544 2 23444443 7999999999877899999999996 99999998643 2344444333 37888
Q ss_pred EeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
.+++.+. ..+++++++++++++++ +++ ++|+|+|+.+|++.+.+++.. |+||+++
T Consensus 296 ~g~~~~~---~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 296 TGSFIGS---MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred EEEecCC---HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 8886553 25789999999999876 445 689999999999999998876 9999875
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=359.09 Aligned_cols=321 Identities=22% Similarity=0.310 Sum_probs=269.6
Q ss_pred eeeecCCC----CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 13 AVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 13 ~~~~~~~~----~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
+.+.+++. +++++++|.|+|+++||+|||.++++|++|++.+.|..+....|.++|||++|+|+++|++++++++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 45666653 38899999999999999999999999999999998876544457899999999999999999999999
Q ss_pred CEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 89 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
|+|++.+. .+|+.|.+|..++++.|.+... +|.. .+ |+|+||+.+|.+.++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWD-TD------------------GGYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcc-cC------------------CcceeEEEeccccEEECCCCC
Confidence 99987654 5799999999999999987653 2322 23 499999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++.+++.+.|||+++ ..+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++++.
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~ 217 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY 217 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence 9999999999999999987 46789999999999999999999999999999 799999999999999999999998754
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 326 (379)
+ .. .+++|+++++.+....+..++++++++ |+++.+|..... ...+++..+ .+++++.+++..
T Consensus 218 ~--~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~--- 281 (329)
T TIGR02822 218 D--TP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTD-TPPLNYQRHLFYERQIRSVTSN--- 281 (329)
T ss_pred c--cC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCcc-CCCCCHHHHhhCCcEEEEeecC---
Confidence 3 11 136899999988888899999999996 999999975322 123333332 336777776533
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.+.++.++++++.+++++ +++++|+|+|+++|++.+.+++.. |+||.
T Consensus 282 ~~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~ 329 (329)
T TIGR02822 282 TRADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVLV 329 (329)
T ss_pred CHHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEeC
Confidence 235788899999999986 357899999999999999999886 99873
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=359.48 Aligned_cols=348 Identities=28% Similarity=0.439 Sum_probs=289.7
Q ss_pred eeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC------
Q 016978 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE------ 84 (379)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~------ 84 (379)
||+++.++++++++++++.|.|++++|+|||.++++|++|+....|..+...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999999867999999999999999999999999999999998887653457889999999999999999986
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc-ceEec
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV-SVAKI 163 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~~~~i 163 (379)
+++||+|++.+..+|+.|.+|+.+.+++|.+... +|.....| .....|+|++|+.++++ .++++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~------------~~~~~g~~a~~~~v~~~~~~~~l 146 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCD------------DPHLSGGYAEHIYLPPGTAIVRV 146 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchh---cccccccc------------CCCCCcccceEEEecCCCceEEC
Confidence 9999999999999999999999999999987653 33221000 00013599999999986 79999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
|+++++.+++++++++.|||+++.+....++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++++
T Consensus 147 P~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~v 226 (361)
T cd08231 147 PDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT 226 (361)
T ss_pred CCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeE
Confidence 99999999999988999999998776667799999999999999999999999999789999899999999999999999
Q ss_pred eCCCCCC-chHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEee
Q 016978 244 VNPKDHD-KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGT 320 (379)
Q Consensus 244 ~~~~~~~-~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~ 320 (379)
+++++.. .++...+++.+++ ++|++|||+|+...+..++++++++ |+++.+|........++.+..++ ++.++.++
T Consensus 227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (361)
T cd08231 227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGV 305 (361)
T ss_pred EcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEEc
Confidence 8876521 2234567788877 9999999999877899999999996 99999997643333344443323 37777776
Q ss_pred ecCCCcccccHHHHHHHHHcC--CCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 321 AFGGFKSRSQVPWLVDKYMKK--EIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+.. ..+++.++++++.++ .+.+.++++++|+++|+++|++.+.+++..|+||++
T Consensus 306 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 306 HNY---DPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred ccC---CchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 543 335788999999888 666777889999999999999999988767999863
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=356.91 Aligned_cols=335 Identities=28% Similarity=0.476 Sum_probs=285.3
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC---C--------CCCCCcccccceeEEEEEe
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---P--------EGLFPCILGHEAAGIVESV 78 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~~G~V~~v 78 (379)
|||+++.++++ ++++++|.|+|.++||+||+.++++|++|+..+.+.. + ...+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999998876 9999999999999999999999999999987665321 1 1136889999999999999
Q ss_pred CCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 79 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
|++++.+++||+|++.+..+|++|.+|.++.++.|..... .|....+ |+|++|+.++.+
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------g~~a~~~~~~~~ 138 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG------------------GGFAEYVVVPAY 138 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC------------------CceeeEEEechH
Confidence 9999999999999999999999999999999999986432 2211012 499999999999
Q ss_pred ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc
Q 016978 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 159 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l 238 (379)
.++++|+++++++++.+ .++.+||+++ ...++++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++
T Consensus 139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ 216 (351)
T cd08233 139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL 216 (351)
T ss_pred HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 99999999999998876 5778999987 778899999999999999999999999999997799998999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRV 316 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~ 316 (379)
|++.++++++ .++.+.+++.+++ ++|++||++|....+..++++++++ |+++.+|... ...++++..+. ++++
T Consensus 217 ga~~~i~~~~--~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~ 291 (351)
T cd08233 217 GATIVLDPTE--VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE--KPISFNPNDLVLKEKT 291 (351)
T ss_pred CCCEEECCCc--cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC--CCCccCHHHHHhhCcE
Confidence 9999999876 6788888888877 7999999999877899999999996 9999999864 23344443333 3788
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchH-HHHHHHHhcCCe--eEEEEe
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEI-NEAFRYMHGGDC--LRCVLK 376 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i-~~A~~~~~~~~~--~Kvvi~ 376 (379)
+.+.+.. ...++++++++++++++++.++++++|+++|+ ++|++.+.+++. .|+||.
T Consensus 292 i~g~~~~---~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 292 LTGSICY---TREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred EEEEecc---CcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 8877543 23689999999999999887888999999996 799999988885 499873
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=322.84 Aligned_cols=316 Identities=24% Similarity=0.292 Sum_probs=272.5
Q ss_pred CccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
..|+..|.+++++.|.+ ++++++|.|+|.|++++||-.|+|+|..|..+..|.+...++|++||.|.+|+|+++|+.|
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv 83 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV 83 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence 45778899999999987 8899999999999999999999999999999999999877899999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
+++++||||+..- ..|.|+|+..+|...+++
T Consensus 84 tdrkvGDrVayl~-------------------------------------------------~~g~yaee~~vP~~kv~~ 114 (336)
T KOG1197|consen 84 TDRKVGDRVAYLN-------------------------------------------------PFGAYAEEVTVPSVKVFK 114 (336)
T ss_pred cccccccEEEEec-------------------------------------------------cchhhheeccccceeecc
Confidence 9999999997431 124999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
+|+.+++.+||++....+|||..+++..+++||++|||+.| |++|+++.|+++..|+ .+|++.++.+|++.+++.|+.
T Consensus 115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE 193 (336)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence 99999999999998999999999999999999999999965 9999999999999999 899999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee--ccEEE
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT--GRVWK 318 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~--~~~i~ 318 (379)
+.++++. +|+.+++.+.|++ |+|+++|..|. +++...+.+|++. |++|.+|+.+.. .-+++ ...+. .+.+.
T Consensus 194 h~I~y~~--eD~v~~V~kiTngKGVd~vyDsvG~-dt~~~sl~~Lk~~-G~mVSfG~asgl-~~p~~-l~~ls~k~l~lv 267 (336)
T KOG1197|consen 194 HPIDYST--EDYVDEVKKITNGKGVDAVYDSVGK-DTFAKSLAALKPM-GKMVSFGNASGL-IDPIP-LNQLSPKALQLV 267 (336)
T ss_pred ceeeccc--hhHHHHHHhccCCCCceeeeccccc-hhhHHHHHHhccC-ceEEEeccccCC-CCCee-hhhcChhhhhhc
Confidence 9999988 8999999999999 99999999999 7799999999996 999999986432 11222 11122 33332
Q ss_pred -eeecCCCcccc----cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 319 -GTAFGGFKSRS----QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 319 -~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
.+.++-...+. ...+++.++.++.+++. |+++|||+++.+|+.+++++... |+++...
T Consensus 268 rpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~diesrktvGkvlLlp~ 331 (336)
T KOG1197|consen 268 RPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIESRKTVGKVLLLPG 331 (336)
T ss_pred cHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence 22222222222 34567778888998865 89999999999999999999987 9998754
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=352.73 Aligned_cols=362 Identities=36% Similarity=0.664 Sum_probs=293.1
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
++|||+++.++++++++++.+.|++.+++|+||+.++++|++|++...|..+ ..+|.++|||++|+|+++|+++..+++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 4689999999877799999999999999999999999999999999888654 346889999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccc-cCCCcc-cccCCcceeeeeEEecCcceEecCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPI-YHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
||+|++.+. .|+.|.+|..+..++|........+|.. ++|-.... .+|++. .+++..|+|++|+.++++.++++|+
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRR-PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccc-cCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999998775 8999999999999999876533222221 11100000 001110 0133457999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++++++.+++++.+|+.++.+...+++|++|||+|+|++|++++|+|+.+|+.++++++++++|.++++++|++++++
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEec
Confidence 99999999999999999998888889999999999988999999999999999977999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCC
Q 016978 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGG 324 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 324 (379)
+++ .++.+.+.+.+.+++|+++||+|+...+..++++++++ |+++.+|.........++...+ .++.++.++....
T Consensus 238 ~~~--~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (365)
T cd08278 238 PKE--EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGD 314 (365)
T ss_pred CCC--cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCC
Confidence 876 57777788877339999999999877899999999996 9999999753222334444443 3467776665433
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
....+.++++++++.++++.+.+. .+.|+++++++|++.+.+++..|+||+
T Consensus 315 ~~~~~~~~~~~~~l~~g~l~~~~~-~~~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 315 SVPQEFIPRLIELYRQGKFPFDKL-VTFYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred cChHHHHHHHHHHHHcCCCChHHh-eEEecHHHHHHHHHHHHCCCceEEEEC
Confidence 322356788999999999865333 468999999999999998887799885
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=349.19 Aligned_cols=342 Identities=25% Similarity=0.349 Sum_probs=284.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. +.+++.+.|.+.+++|+||+.++++|++|++.+.+..+..+.|.++|||++|+|+++|++++++++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 79999999987 89999999999999999999999999999998887665556688999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCCC
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~~ 167 (379)
+|++.+..+|+.|..|..++++.|.+... +++.. ....|+|++|+.++.+ .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~--~~~~~-----------------~~~~g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLG--GWKFS-----------------NFKDGVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCC--Ccccc-----------------CCCCcceeEEEEcchhhCceEECCCCC
Confidence 99998888999999999999999987531 11100 0112499999999974 899999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++.++..+.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+++++++++++.++++++|++++++++
T Consensus 141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 219 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK 219 (351)
T ss_pred CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence 9999999988999999984 778899999999998899999999999999997799999999999999999999999887
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccC--ccee-eeccEEEeeecC
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR--PFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~--~~~~-~~~~~i~~~~~~ 323 (379)
+ .++.+.+.+.+.+ ++|++|||+|+...+..++++++++ |+++.+|.........++ ++.. ....++.+....
T Consensus 220 ~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 296 (351)
T cd08285 220 N--GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCP 296 (351)
T ss_pred C--CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecC
Confidence 6 5677788887766 8999999999878899999999996 999999976543223332 1111 224445443321
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCc-eeeeeecchHHHHHHHHhcCCe--eEEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEY-VTHNMTLGEINEAFRYMHGGDC--LRCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~~i~~A~~~~~~~~~--~Kvvi~~ 377 (379)
...++++++++++.++++++.+. +.+.|+++|+++|++.+++++. .|++|++
T Consensus 297 --~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 297 --GGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred --CccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 13467899999999999997443 4456999999999999998874 4999975
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=350.52 Aligned_cols=320 Identities=17% Similarity=0.223 Sum_probs=252.2
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC----CCCCcccccceeEEEEEeCCCCCCc
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
-|+++++++++ ++++|+|.|+ +++||+|||.++|||++|++.++|.++. ..+|.++|||++|+|+++|.+ .+
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~ 78 (341)
T cd08237 3 NQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY 78 (341)
T ss_pred ccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence 47899999998 9999999995 9999999999999999999999987532 257999999999999998875 79
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||||++.+..+|+ |+.|. ..+.|.+... +|.. .+| +|+||+.+|++.++++|+
T Consensus 79 ~vGdrV~~~~~~~~~-~~~~~--~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~vP~ 133 (341)
T cd08237 79 KVGTKVVMVPNTPVE-KDEII--PENYLPSSRF---RSSG-YDG------------------FMQDYVFLPPDRLVKLPD 133 (341)
T ss_pred CCCCEEEECCCCCch-hcccc--hhccCCCcce---eEec-CCC------------------ceEEEEEEchHHeEECCC
Confidence 999999999887877 55663 5577876432 2322 334 999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhh--ccCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Gag~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
++++++|+++. +++++|+++.. ...+++|++|||+|+|++|++++|+|+. +|+.+|++++++++|++++++.+++.
T Consensus 134 ~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~ 212 (341)
T cd08237 134 NVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY 212 (341)
T ss_pred CCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee
Confidence 99999887554 78888988643 3456899999999999999999999996 66658999999999999998866543
Q ss_pred EeCCCCCCchHHHHHHHhcCC-CccEEEEcCC---CHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEE
Q 016978 243 FVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVW 317 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g---~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i 317 (379)
.++ + ...+ ++|+|||++| .+.++..++++++++ |+++.+|.... ..+++...++ +++++
T Consensus 213 ~~~------~-------~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~~~i 276 (341)
T cd08237 213 LID------D-------IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSEY--PVPINTRMVLEKGLTL 276 (341)
T ss_pred ehh------h-------hhhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecCC--CcccCHHHHhhCceEE
Confidence 221 1 1122 7999999999 456799999999996 99999997532 3344444333 47888
Q ss_pred EeeecCCCcccccHHHHHHHHHcC---CCCCCCceeeeeecc---hHHHHHHHHhcCCeeEEEEecC
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKK---EIKVDEYVTHNMTLG---EINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~i~~~~~~~---~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
.++..+ ...+++++++++.++ +.++.++++++|+++ |+++|++...++...|+||+++
T Consensus 277 ~g~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~ 340 (341)
T cd08237 277 VGSSRS---TREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE 340 (341)
T ss_pred EEeccc---CHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence 887543 235789999999998 335678899999985 5666666665553449999875
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=343.82 Aligned_cols=360 Identities=44% Similarity=0.780 Sum_probs=292.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++.+++++++|.|++.+++|+||+.++++|+.|+.++.|..+ ..+|.++|+|++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 79999999988899999999999999999999999999999998888665 34678899999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+..+|++|.+|++++.++|.+.... -+|.. .++...+---|.........|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQL-PDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-ccccc-CCCcccccccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999999999999999999999875421 00000 0000000000111111123469999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++++++++.+||.++....++.+|++|||+|+|++|++++++|+.+|+.+|+++++++++.++++++|++++++.+.
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~- 236 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE- 236 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC-
Confidence 9999999999999998888889999999999988999999999999999955999999999999999999999988876
Q ss_pred CchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCcc
Q 016978 250 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS 327 (379)
Q Consensus 250 ~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 327 (379)
.++...+++.+.+ ++|+++|++++...+..++++++++ |+++.+|.........+....+. .+..+.++.++....
T Consensus 237 -~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (363)
T cd08279 237 -DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANP 314 (363)
T ss_pred -ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCc
Confidence 5677778887765 8999999999777899999999996 99999987543233344444433 255556665544344
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 375 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi 375 (379)
...++++++++.++++.+.+.+.++|+++|+++|++.+.+++..|.||
T Consensus 315 ~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 315 RRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred HHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 567889999999999987666788999999999999999888776665
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=341.27 Aligned_cols=334 Identities=22% Similarity=0.388 Sum_probs=277.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. +.++++|.|+|.+++|+||+.++++|++|+..+.|..+..++|.++|||++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999999886 99999999999999999999999999999999888765556789999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+..+|+.|.+|.++++++|.+... ++.. .+ |+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVH-RD------------------GGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEc-cC------------------CcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999986542 2211 23 49999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
++++ +...+.++|+ +.+..++++|++|||+|+|++|++++|+|+. +|+..+++++++++|.++++++|+++++++++
T Consensus 138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~ 215 (339)
T PRK10083 138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ 215 (339)
T ss_pred HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence 8876 4457778886 5677889999999999999999999999996 69967888999999999999999999998865
Q ss_pred CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCc
Q 016978 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK 326 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 326 (379)
.++.+.+... + ++|++||++|.+..+..++++++++ |+++.+|.... ...+....+. +++++.+...
T Consensus 216 --~~~~~~~~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---- 284 (339)
T PRK10083 216 --EPLGEALEEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE--PSEIVQQGITGKELSIFSSRL---- 284 (339)
T ss_pred --ccHHHHHhcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CceecHHHHhhcceEEEEEec----
Confidence 5566665432 3 5789999999877899999999996 99999987532 2222222222 2455554432
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-e-eEEEEecCC
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD-C-LRCVLKMQD 379 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~-~-~Kvvi~~~~ 379 (379)
....++++++++.++++.+.+++.+.|+++++++|++.+.+++ . .|+|+.+.|
T Consensus 285 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 285 NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 2357889999999999987666789999999999999998654 3 499999875
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=349.98 Aligned_cols=331 Identities=19% Similarity=0.249 Sum_probs=263.9
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccc-cCCCC-C-----CCCCcccccceeEEEEEeCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDP-E-----GLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~-~g~~~-~-----~~~p~~~G~e~~G~V~~vG~ 80 (379)
|+||++++.+++. ++++++|.|+|+++||+|||.++|||++|++.+ .|... . .++|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4689999999987 999999999999999999999999999999976 44321 1 14688999999999999999
Q ss_pred CCC-CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc-
Q 016978 81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV- 158 (379)
Q Consensus 81 ~v~-~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~- 158 (379)
+++ .+++||||++.+...|+.|..|.. +|.. .+| +|+||+.+|.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~-~~G------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYT-YPG------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------cccc-CCC------------------cceEEEEecHHh
Confidence 998 599999999998888988887721 1211 234 99999999987
Q ss_pred ---ceEecCCCCCccccccc-cccc-hhhhhhh--------hhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcC--CCeE
Q 016978 159 ---SVAKIDPQAPLDKVCLL-GCGV-PTGLGAV--------WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAG--ASRV 222 (379)
Q Consensus 159 ---~~~~iP~~~~~~~aa~l-~~~~-~ta~~~l--------~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g--~~~v 222 (379)
.++++|+++++++|+++ +.+. .+++.++ .+.+++++|++|+|+|+ |++|++++|+|+.+| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 68999999999998865 2111 1233322 24578899999999985 999999999999985 4579
Q ss_pred EEEcCChhHHHHHHhc--------CCc-eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceE
Q 016978 223 IGIDIDPKKFDRAKNF--------GVT-EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTS 292 (379)
Q Consensus 223 i~v~~~~~~~~~~~~l--------g~~-~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~i 292 (379)
++++++++|+++++++ |++ .++++.+ ..++.+.+++.+++ ++|++||++|.+..+..++++++++ |++
T Consensus 207 i~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~-~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~ 284 (410)
T cd08238 207 VVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT-IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCL 284 (410)
T ss_pred EEEcCCHHHHHHHHHhccccccccCceEEEECCCc-cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeE
Confidence 9999999999999997 776 4676643 14677888888887 9999999999888899999999996 888
Q ss_pred EEEccCC-CCcccccCcceeee-ccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe
Q 016978 293 VIVGVAA-SGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC 370 (379)
Q Consensus 293 v~~g~~~-~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~ 370 (379)
+.++... .....+++...+.. ++++.++..+ ...+++++++++++|++++.++++++|+|+|+++|++.+. ++.
T Consensus 285 v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~ 360 (410)
T cd08238 285 NFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGG---NTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIP 360 (410)
T ss_pred EEEEccCCCCccccccHHHhhhcCcEEEEeCCC---CHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccC
Confidence 7765422 11123444444433 7888887543 2357999999999999999889999999999999999999 554
Q ss_pred e-EEEEecC
Q 016978 371 L-RCVLKMQ 378 (379)
Q Consensus 371 ~-Kvvi~~~ 378 (379)
. |+||..+
T Consensus 361 ~gKvvl~~~ 369 (410)
T cd08238 361 GGKKLIYTQ 369 (410)
T ss_pred CceEEEECC
Confidence 4 9999763
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=336.85 Aligned_cols=340 Identities=29% Similarity=0.460 Sum_probs=285.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||++++.+++. +.+.++|.|.| .+++|+||+.++++|++|+..+.|.++..++|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 68999998887 89999999999 89999999999999999999998877666678999999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~ 166 (379)
|+|++.+...|+.|.+|.+++..+|.+.....+.|. ...|+|++|++++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence 999999999999999999999999987553221111 123499999999987 99999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++++.+++++.+||+++ ...++++|++|||.|+|++|++++|+|+.+|+.+++++++++++.+.++++|++.++++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~ 219 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINP 219 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcC
Confidence 99999999999999999986 77889999999998889999999999999997578888888999999999999999988
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
++ .++.+.+++.+++ ++|++||+.|+...+..++++++++ |+++.+|..............+..+.++.+....
T Consensus 220 ~~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (347)
T cd05278 220 KN--GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVP-- 294 (347)
T ss_pred Cc--chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeeccC--
Confidence 76 5687888887776 8999999999866799999999996 9999998653321111112122335555554322
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-e-EEEEe
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-L-RCVLK 376 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~-~-Kvvi~ 376 (379)
....++++++++.++.+.+.+.+...|+++++++|++.+..++. . |+|++
T Consensus 295 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~ 346 (347)
T cd05278 295 -VRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIR 346 (347)
T ss_pred -chhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEec
Confidence 24578889999999999876556788999999999999988776 4 98876
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=335.43 Aligned_cols=330 Identities=27% Similarity=0.452 Sum_probs=280.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++.++.++++|.|++.+++|+||+.++++|++|+..+.|..+....|.++|||++|+|+++|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 79999999966699999999999999999999999999999999888665445688999999999999999999999999
Q ss_pred EEeecC-CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 90 ~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
+|++.+ ...|+.|.+|..+.++.|..... .|.. .+ |+|++|+.++.+.++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~-~~------------------g~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVT-RD------------------GGYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcc-cC------------------CcceeEEEEchhheEeCCCCCC
Confidence 998754 57899999999999999997653 2221 22 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++++.+++.+.+||+++.. .++++|++|||+|+|++|++++++|+.+|+ +|+++++++++++.++++|+++++++..
T Consensus 139 ~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~ 216 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK 216 (333)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC
Confidence 99999999999999998754 589999999999999999999999999999 7999999999999999999999998866
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCcc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS 327 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 327 (379)
.++.+.+++. +++|+++|++|.+..+..++++++++ |+++.+|... ...+++...+ .+++++.++..+.
T Consensus 217 --~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~~--- 286 (333)
T cd08296 217 --EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG--EPVAVSPLQLIMGRKSIHGWPSGT--- 286 (333)
T ss_pred --ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC--CCCCcCHHHHhhcccEEEEeCcCC---
Confidence 5566666665 37999999998767899999999996 9999999864 2344443333 3378888776432
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
..++..+++++..++++. ++ +.|+++|+++|++.+.+++.. |+|++
T Consensus 287 ~~~~~~~~~~~~~~~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 287 ALDSEDTLKFSALHGVRP--MV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHHHHHHHHHHhCCCCc--eE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 357888888888887764 34 689999999999999998876 99875
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=337.69 Aligned_cols=349 Identities=28% Similarity=0.396 Sum_probs=284.8
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.++++ +.+.+.|.|+| .+++|+||+.++++|++|+..+.|.++..++|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 78999998866 99999999988 49999999999999999999999987666678899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCccccc--------CCcceeeeeEEecCc--
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHF--------MGTSTFSQYTVVHDV-- 158 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~--------~~~g~~~~~~~v~~~-- 158 (379)
|+|++.+...|+.|++|..+.+++|.+......+ ++ ++|+.-+.. ...|+|++|+.++.+
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 149 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEM-----AK-----LYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADV 149 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCccccccc-----cc-----ccccccccccccccccCCCCCeeEEEEEcccccC
Confidence 9999998889999999999999999976532100 00 000000000 113699999999988
Q ss_pred ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc
Q 016978 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 159 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l 238 (379)
.++++|+++++++|++++..+.+||+++ +.+++.+|++|||+|+|++|++++++|+.+|+.+++++++++++.++++++
T Consensus 150 ~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 150 GPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred eEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 8999999999999999999999999987 788899999999998899999999999999985699999999999999998
Q ss_pred CCceEeCCCCCCc-hHHHHHHHhcCC-CccEEEEcCCC---------------------HHHHHHHHHHhccCCceEEEE
Q 016978 239 GVTEFVNPKDHDK-PIQQVLVDLTDG-GVDYSFECIGN---------------------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 239 g~~~v~~~~~~~~-~~~~~i~~~~~~-g~d~vid~~g~---------------------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+...++++.+ . ++.+.+++.+.+ ++|++||++|+ ...+..++++++++ |+++.+
T Consensus 229 ~~~~vi~~~~--~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~ 305 (386)
T cd08283 229 LGAETINFEE--VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSII 305 (386)
T ss_pred CCcEEEcCCc--chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEEE
Confidence 5446777665 4 478888888877 89999999875 34689999999996 999999
Q ss_pred ccCCCCcccccCcc-eeeeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eE
Q 016978 296 GVAASGQEISTRPF-QLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC--LR 372 (379)
Q Consensus 296 g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~--~K 372 (379)
|..... ...+++. .+.++.++.+.... ....+.++++++.++++.+.+++.+.|+++|+++|++.+.+++. .|
T Consensus 306 g~~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k 381 (386)
T cd08283 306 GVYGGT-VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIK 381 (386)
T ss_pred cCCCCC-cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEE
Confidence 875432 2233332 22336666665322 23578889999999999876667889999999999999988773 49
Q ss_pred EEEec
Q 016978 373 CVLKM 377 (379)
Q Consensus 373 vvi~~ 377 (379)
+||+.
T Consensus 382 ~~~~~ 386 (386)
T cd08283 382 VVLKP 386 (386)
T ss_pred EEecC
Confidence 99863
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=333.39 Aligned_cols=336 Identities=26% Similarity=0.404 Sum_probs=279.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC---------CCCCcccccceeEEEEEeCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---------GLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~---------~~~p~~~G~e~~G~V~~vG~ 80 (379)
|||++++++++ +++++++.|++.+++|+||+.++++|+.|+..+.|.... .++|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 78999998887 999999999999999999999999999999988775311 14677899999999999999
Q ss_pred CCC--CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 81 GVT--EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 81 ~v~--~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
+++ .+++||+|++.+..+|+.|.+|..+++++|.... .+|... ...|+|++|+.++++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHD---LYGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCcc---ceeecc-----------------CCCCcceeeEEcccc
Confidence 999 8999999999999999999999999999997543 233210 012499999999988
Q ss_pred -ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 159 -SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 159 -~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
.++++|+++++++++++ .++.++|+++ +.+++++|++|||.|+|++|++++++|+.+|+..++++++++++.+++++
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 67899999999999988 7889999986 77899999999997789999999999999998678889899999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccE
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV 316 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 316 (379)
+|++.++++.. .++.+.+.+.+++ ++|++||++|....+..++++++++ |+++.+|.......+++......++++
T Consensus 218 ~g~~~v~~~~~--~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~ 294 (350)
T cd08256 218 FGADVVLNPPE--VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGDPVTVDWSIIGDRKELD 294 (350)
T ss_pred cCCcEEecCCC--cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCCCCccChhHhhcccccE
Confidence 99999888765 6777888888777 8999999999767789999999996 999999865432222221111123556
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
+.++.... ..+.+++++++++.+++.+++.+.|+++++++|++.+++++.. |+|+
T Consensus 295 i~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 295 VLGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred EEEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 66554332 3678899999999998765578999999999999999988765 8874
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=331.31 Aligned_cols=337 Identities=28% Similarity=0.423 Sum_probs=285.2
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++. ++++++|.|+| .+++|+||+.++++|+.|+..+.|..+..++|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999999887 99999999986 89999999999999999999998876655568899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~ 166 (379)
|+|++.+...|+.|.+|..++.+.|....+. .|.. .+ |+|++|+.++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~------------------g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNL-ID------------------GTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccc-cC------------------CeeeeEEEcccccCceEECCCC
Confidence 9999999899999999999999999865331 1211 22 499999999987 89999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++.+++.+++.+.+||.++....++.+|++|||.|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.++++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~ 218 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNS 218 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecc
Confidence 99999999999999999877778889999999999889999999999999994489999899999999999999999988
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 324 (379)
++ .++.+.+.+.+.+ ++|++|||+|....+..+++.++++ |+++.+|.... ...+++.. +.+++++.+....
T Consensus 219 ~~--~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~- 292 (345)
T cd08286 219 AK--GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK--PVDLHLEKLWIKNITITTGLVD- 292 (345)
T ss_pred cc--ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC--CCCcCHHHHhhcCcEEEeecCc-
Confidence 76 5677778887776 8999999999877889999999996 99999986432 23344433 2336666654321
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC---eeEEEEec
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD---CLRCVLKM 377 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~---~~Kvvi~~ 377 (379)
...+.+++++++++.+.+.+++.++|+++++++|++.+.+.. ..|+||++
T Consensus 293 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 293 ---TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred ---hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 145788999999999887777789999999999999988763 35999974
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=330.36 Aligned_cols=302 Identities=22% Similarity=0.303 Sum_probs=239.9
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeecc-ccccccccCCCCC---CCCCcccccceeEEEEEeCCCCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALC-HTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
+|||+++.+++. +++++.|.|+|+++||+|||.+++|| ++|++.+.|..+. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478999998887 99999999999999999999999996 7999988887643 2579999999999999999998 6
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||||++. |..|..|.. | .. |+|+||+.+|++.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~---~~------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G---LF------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c---cC------------------CcccceEEcCHHHceeCC
Confidence 9999999863 223332211 0 12 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
++++++. ++++ .+.+||+++.+ . ..++++|||+|+|++|++++|+|+++|++.|++++.+++|++.+.++ .++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i 191 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL 191 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence 9999854 5454 56899998744 3 34689999999999999999999999996677888888887776543 445
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
++.+ . ...++|+||||+|+..+++.++++++++ |+++.+|..... .+++...+ .+++++.++...
T Consensus 192 ~~~~--~---------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~i~~~~~~ 257 (308)
T TIGR01202 192 DPEK--D---------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYTEP--VNFDFVPAFMKEARLRIAAEW 257 (308)
T ss_pred Chhh--c---------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecCCC--cccccchhhhcceEEEEeccc
Confidence 4432 1 1238999999999987899999999996 999999986432 33333333 336777765432
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-eEEEEe
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-LRCVLK 376 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~-~Kvvi~ 376 (379)
...++++++++++++++++.++++++|||+|+++|++.+.+++. .|++|+
T Consensus 258 ---~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 258 ---QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred ---chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 23579999999999999998889999999999999998776655 499984
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=328.99 Aligned_cols=333 Identities=29% Similarity=0.432 Sum_probs=283.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.++++++.+.+.+.|.+.+++|+||+.++++|++|+..+.|.++ ...+|.++|+|++|+|+++|++++.++
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999999877899999999999999999999999999999998887654 235688999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+...|+.|.+|+.+..++|..... .|.. .+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIG-TDG------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCcc-CCC------------------cceeeEEecHHHeEECCCC
Confidence 99999999999999999999999999998775 2332 334 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++++.+++.+.|||+++... ..+.+|++|||+|+|.+|++++|+|+.+|..+|+++.+++++.+.++++|++++++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~ 218 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLN 218 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEc
Confidence 99999999999999999987665 46889999999999889999999999999338898989999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 323 (379)
++. . +.+.+++.+.+ ++|+++|++|+...+..++++++++ |+++.+|.... ..++... +.+++++.+....
T Consensus 219 ~~~--~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~~ 291 (340)
T cd05284 219 ASD--D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH---GRLPTSDLVPTEISVIGSLWG 291 (340)
T ss_pred CCc--c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC---CccCHHHhhhcceEEEEEecc
Confidence 876 4 77788888776 8999999999877799999999996 99999987542 2222222 2346666665433
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
....+.++++++.++.+.+ ..+.|+++++++|++.+.+++.. |+|+.+
T Consensus 292 ---~~~~~~~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 292 ---TRAELVEVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred ---cHHHHHHHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 2357888999999998874 34679999999999999988876 888753
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=327.36 Aligned_cols=339 Identities=27% Similarity=0.450 Sum_probs=286.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++.++.+++.|.|.+.+++|+||+.++++|++|+..+.|..+...+|.++|+|++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999999888899999999999999999999999999999999888766556688999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCCC
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQA 167 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~~ 167 (379)
+|++.+...|++|.+|+.+..+.|.+... .|.. .+ |+|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFT-HP------------------GSFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccC-CC------------------CcceeEEEcccccCceEECCCCC
Confidence 99987778999999999999999998542 2221 12 499999999974 999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++++.+++.+.+||+++.+..++.++++|||+|+|++|++++|+|+.+|+ +|+++.+++++.+.++++|++++++++
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~ 217 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS 217 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence 9999999998999999998778889999999999999999999999999999 899998999999999999999998875
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc-cccCccee-eeccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE-ISTRPFQL-VTGRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~ 325 (379)
+ ..++...+.++..+++|++|||+|+...+...+++++++ |+++.+|....... ..++...+ .++.++.+....
T Consensus 218 ~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 293 (345)
T cd08260 218 E-VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM-- 293 (345)
T ss_pred c-chhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC--
Confidence 4 245666777766558999999999767789999999996 99999987543221 23333333 235666665432
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
....+++++++++++++.+.+++.+.++++++++|++.+++++.. |+|++
T Consensus 294 -~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 294 -PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred -CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 235788899999999988766678899999999999999988876 88864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=330.24 Aligned_cols=360 Identities=32% Similarity=0.530 Sum_probs=290.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC---cC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE---VQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~---~~ 86 (379)
|||+++.+++.++++.+.|.|.+.+++|+||+.++++|++|+....+..+. .+|.++|||++|+|+.+|++++. ++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 789999998777999999999999999999999999999999988886654 56789999999999999999988 99
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccC-CCcccccCCcceeeeeEEecCcceEecCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSIN-GKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
+||+|++.+..+|+.|.+|..+.+++|.+...+...+....+|+..+... +... -....|+|++|+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPV-YMYSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcc-ccccCCcceeEEEechhhEEECCC
Confidence 99999998889999999999999999998652211110001110000000 0000 001246999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++.+++.+++++.|||+++.....+.++++|||+|+|++|++++++|+.+|+.+++++++++++.+.++++|++.+++
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~ 238 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN 238 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEec
Confidence 99999999999999999999888888899999999988999999999999999955999989999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
+++ .++.+.+++...+ ++|++||++++.+.+..++++++++ |+++.+|.........++...+ ..+.++.+++..
T Consensus 239 ~~~--~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
T cd08263 239 AAK--EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA 315 (367)
T ss_pred CCc--ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC
Confidence 876 6777788887766 8999999999965789999999996 9999998754322333443443 236666654321
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.....++++++++.++.+.+.+.+.+.|+++++.+|++.+++++.. |+||+
T Consensus 316 --~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 316 --RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred --CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 1235788899999999998766678899999999999999998876 88874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=327.32 Aligned_cols=336 Identities=28% Similarity=0.432 Sum_probs=282.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC------------CCCCCcccccceeEEEEE
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP------------EGLFPCILGHEAAGIVES 77 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~~G~V~~ 77 (379)
|||+++..++.++++.++|.|++.+++|+||+.++++|++|+..+.|..+ ..++|.++|+|++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 79999998888899999999999999999999999999999998877643 224577899999999999
Q ss_pred eCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 78 vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
+|++++++++||+|++.+...|+.|..|.++.+++|..... .|.. .. |+|++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIF-QD------------------GGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeee-cc------------------CcceeeEEecH
Confidence 99999999999999999999999999999999999976432 2211 22 49999999999
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+.++++|+++++.+++.+.+.+.+||+++.....+.++++|||+|+|++|++++|+|+.+|+++|+++++++++.+.+++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999998777667789999999889999999999999999778899899999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEE
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVW 317 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i 317 (379)
+|++.+++.++ .++.+.+.+...+++|++||+.|....+..++++++++ |+++.+|........+.... .+.+.++
T Consensus 219 ~g~~~~~~~~~--~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~-~~~~~~i 294 (350)
T cd08240 219 AGADVVVNGSD--PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLL-PLRALTI 294 (350)
T ss_pred hCCcEEecCCC--ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCCCcccHHHH-hhcCcEE
Confidence 99988888765 56666777766558999999999777899999999996 99999987543222222221 1246666
Q ss_pred EeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.+..... .+++.+++++++++.+.+. ....|+++++++|++.+.+++.. |++++
T Consensus 295 ~~~~~~~---~~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 295 QGSYVGS---LEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred EEcccCC---HHHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence 6655432 2578889999999988753 56789999999999999988876 98875
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=322.53 Aligned_cols=338 Identities=28% Similarity=0.418 Sum_probs=276.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCC-CCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~-~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++..++. +++++++.|+|. +++|+||+.++++|+.|+....|.++ ...|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 68999988754 999999999985 99999999999999999998888665 3357889999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~ 166 (379)
|+|++.+..+|+.|.+|++++.+.|.+... +|.. + .....|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~------------~~~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA---G------------SPNLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc---c------------cCCCCCceeEEEEcccccCceEECCCC
Confidence 999999989999999999999999986432 1110 0 00013499999999865 99999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++++.++++++|||+++. .+++.+|++|||+|+|++|++++|+|+.+|+.+|+++++++++.+.++++|+. .++.
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~ 218 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF 218 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence 999999999999999999874 57899999999998899999999999999975788998889999999999985 4555
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 324 (379)
+. .++...+.+.+++ ++|++||++|+...+..++++++++ |+++.+|..... ........ +..+.++....
T Consensus 219 ~~--~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~--- 291 (344)
T cd08284 219 ED--AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAE-EFPFPGLDAYNKNLTLRFGR--- 291 (344)
T ss_pred CC--cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCC-CccccHHHHhhcCcEEEEec---
Confidence 44 5677788888776 9999999999877899999999996 999999975421 22222222 22355554331
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
......++++++++.++.+.+.+++.+.|+++++++|++.+.+++..|+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~ 343 (344)
T cd08284 292 CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343 (344)
T ss_pred CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence 1234678999999999998876567889999999999998887666788874
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=328.88 Aligned_cols=340 Identities=21% Similarity=0.271 Sum_probs=275.6
Q ss_pred ccccceeeeeec--CCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC----------CCCCCcccccc
Q 016978 6 QVITCKAAVAWE--PNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFPCILGHE 70 (379)
Q Consensus 6 ~~~~~~a~~~~~--~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~----------~~~~p~~~G~e 70 (379)
.|.+|||+++.. .+.+ +++.++|.|.+.+++|+||+.++++|++|++...+... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 467899998853 3333 78899999999999999999999999999988766411 01122488999
Q ss_pred eeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceee
Q 016978 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (379)
Q Consensus 71 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (379)
++|+|+++|++++.+++||+|++.+...|+.|..|..+..++|..... +|+...+ |+|+
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~------------------g~~a 147 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY------------------GSFA 147 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC------------------Ccce
Confidence 999999999999999999999999999999999999999999986543 3432122 4999
Q ss_pred eeEEecCcceEecCCCCCccccccccccchhhhhhhhhc--cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 151 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
+|+.++...++++|+++++++++.+++.+.+||+++... +++++|++|||+|+ |++|++++++|+.+|+ +++++++
T Consensus 148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~ 226 (393)
T cd08246 148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS 226 (393)
T ss_pred eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999999999999999999999999987654 67899999999997 9999999999999999 7778889
Q ss_pred ChhHHHHHHhcCCceEeCCCCCC--------------------chHHHHHHHhcCC--CccEEEEcCCCHHHHHHHHHHh
Q 016978 228 DPKKFDRAKNFGVTEFVNPKDHD--------------------KPIQQVLVDLTDG--GVDYSFECIGNVSVMRAALECC 285 (379)
Q Consensus 228 ~~~~~~~~~~lg~~~v~~~~~~~--------------------~~~~~~i~~~~~~--g~d~vid~~g~~~~~~~~~~~l 285 (379)
++++++.++++|+++++++++.+ ..+.+.+.+++++ ++|++||++|+ ..+..+++++
T Consensus 227 s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l 305 (393)
T cd08246 227 SEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVC 305 (393)
T ss_pred CHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHh
Confidence 99999999999999998864311 1356677787776 79999999998 6689999999
Q ss_pred ccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHH
Q 016978 286 HKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 364 (379)
Q Consensus 286 ~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~ 364 (379)
+++ |+++.+|..... ...+....+ ..+.++.+.+... ..++.++++++.++.+.+ .+.++|+++|+++|++.
T Consensus 306 ~~~-G~~v~~g~~~~~-~~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~ 378 (393)
T cd08246 306 DRG-GMVVICAGTTGY-NHTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQL 378 (393)
T ss_pred ccC-CEEEEEcccCCC-CCCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHHH
Confidence 996 999999875321 122222222 2356666654432 247888999999998874 36789999999999999
Q ss_pred HhcC-Cee-EEEE
Q 016978 365 MHGG-DCL-RCVL 375 (379)
Q Consensus 365 ~~~~-~~~-Kvvi 375 (379)
+.++ +.. |+|+
T Consensus 379 ~~~~~~~~gkvvv 391 (393)
T cd08246 379 MHRNQHHVGNMAV 391 (393)
T ss_pred HHhCccccceEEE
Confidence 9988 565 8876
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=323.34 Aligned_cols=338 Identities=25% Similarity=0.396 Sum_probs=269.8
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
..++++++..++. +.+++.+.|.+.+++|+||+.++++|++|+.++.+... ...+|.++|||++|+|+++|++++.
T Consensus 16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 94 (364)
T PLN02702 16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH 94 (364)
T ss_pred cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence 4466666776665 99999999989999999999999999999998876321 1235778999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||+|++.+..+|+.|..|+.+.++.|..... ++....+ |+|++|+.++.+.++++|
T Consensus 95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~------------------g~~~~y~~v~~~~~~~~P 153 (364)
T PLN02702 95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH------------------GSLANQVVHPADLCFKLP 153 (364)
T ss_pred CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC------------------CcccceEEcchHHeEECC
Confidence 9999999999999999999999999999986321 2211112 499999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++.++++.. .+.++|+++ ...++.+|++|||+|+|++|++++|+|+.+|+..|+++++++++.++++++|+++++
T Consensus 154 ~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 154 ENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIV 231 (364)
T ss_pred CCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 999999887522 344577775 778899999999999999999999999999996788898899999999999999887
Q ss_pred CCCCCCchHHHHHHHh---cCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEee
Q 016978 245 NPKDHDKPIQQVLVDL---TDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGT 320 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~---~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~ 320 (379)
+++....++.+.+.+. +.+++|++||++|+...+..++++++++ |+++.+|.... ...+...... +++++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~ 308 (364)
T PLN02702 232 LVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN--EMTVPLTPAAAREVDVVGV 308 (364)
T ss_pred ecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CCcccHHHHHhCccEEEEe
Confidence 6543224566666554 2348999999999778899999999996 99999997532 1222222222 36677665
Q ss_pred ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeec--chHHHHHHHHhcCCee-EEEEe
Q 016978 321 AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTL--GEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~--~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
+.. ...+..++++++++.+.+.+++.+.|++ +++++|++.+.+++.. |+||.
T Consensus 309 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 309 FRY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred ccC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 432 2467889999999998766667788666 7999999998888765 99985
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=324.65 Aligned_cols=343 Identities=28% Similarity=0.376 Sum_probs=274.3
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||++++.+++. ++++++|+|.+ .+++|+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 68899988875 99999999986 799999999999999999999988765 3468899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCc---cccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEec
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGA---TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKI 163 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~---~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~i 163 (379)
|+|++.+..+|+.|..|+.+..+.|...... ..+|.. . ..-..|+|++|+.+|.+ .++++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~g~~a~y~~v~~~~~~~~~l 143 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYV--------------D-MGPYGGGQAEYLRVPYADFNLLKL 143 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCccccccccccc--------------c-cCCCCCeeeeEEEeecccCcEEEC
Confidence 9999999999999999999999999864321 001100 0 00012599999999976 89999
Q ss_pred CCCCCcc---ccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 164 DPQAPLD---KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 164 P~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
|++++++ +++.++..+.+||+++ ..+++++|++|||.|+|++|++++|+|+++|+.+|++++++++|.++++++|+
T Consensus 144 P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~ 222 (375)
T cd08282 144 PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222 (375)
T ss_pred CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 9999998 5677888899999987 78899999999999889999999999999998678889999999999999998
Q ss_pred ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH-----------HHHHHHHHhccCCceEEEEccCCCCcc------
Q 016978 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS-----------VMRAALECCHKGWGTSVIVGVAASGQE------ 303 (379)
Q Consensus 241 ~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~-----------~~~~~~~~l~~~~G~iv~~g~~~~~~~------ 303 (379)
..+++++ .++.+.+.+.+.+++|+++||+|+.. .+..++++++++ |+++.+|.......
T Consensus 223 -~~v~~~~--~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~ 298 (375)
T cd08282 223 -IPIDFSD--GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAA 298 (375)
T ss_pred -eEeccCc--ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCccccccccc
Confidence 4566654 56777787776668999999998752 588999999996 99998886532111
Q ss_pred -----cccCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 304 -----ISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 304 -----~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
..++...+. .+..+.+... .....+.+++++++++++++.+++.+.|+++++++|++.+.+++..|+|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~~ 375 (375)
T cd08282 299 AKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIKP 375 (375)
T ss_pred ccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence 111111111 1333333221 1235688899999999998766688999999999999999988833999863
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=320.13 Aligned_cols=336 Identities=25% Similarity=0.396 Sum_probs=272.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC---CCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++.++++++++.+.|.|+|.+++|+||+.++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999988889999999999999999999999999999998765531 1224678899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+..+|+.|.+|..+.+++|.... +.|.. .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~------------------g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTK---GVGVN-RP------------------GAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcc---eeeec-CC------------------CcceeeEEechHHeEECcCC
Confidence 9999999999999999999999999998643 12221 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++++.+ ..+.++++++.. ...+|++|+|.|+|++|++++|+|+.+|+++|+++++++++.++++++|+++++++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~ 215 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV 215 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence 999888754 355566555433 34689999999889999999999999999668888889999999999999999988
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 324 (379)
++ .++.+.+++.+++ ++|++|||.|+...+..++++++++ |+++.+|.......++ ...+ +++.++.++...
T Consensus 216 ~~--~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~--~~~~~~~~~~l~~~~~~- 289 (341)
T PRK05396 216 AK--EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGDMAID--WNKVIFKGLTIKGIYGR- 289 (341)
T ss_pred cc--ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCccc--HHHHhhcceEEEEEEcc-
Confidence 76 6788888888776 9999999999888899999999996 9999998754322222 2222 235666655321
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
.....+..+++++.++ +.+.+.+.+.|+++++++|++.+.+++..|+|++|+
T Consensus 290 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~ 341 (341)
T PRK05396 290 -EMFETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD 341 (341)
T ss_pred -CccchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence 1123456788888888 544455789999999999999988877449999875
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=321.79 Aligned_cols=309 Identities=21% Similarity=0.229 Sum_probs=252.7
Q ss_pred ceeeeeecCCCC-----eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 016978 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
|||+++.+++.| +++.++|.|.|+++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 789999998854 788899999999999999999999999999998887643 35788999999999999999999
Q ss_pred C-cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 84 E-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 84 ~-~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
+ +++||+|++.+. .+ |+|++|+.+|++.+++
T Consensus 81 ~~~~vGd~V~~~~~------------------------------~~------------------g~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG------------------------------SY------------------GTYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC------------------------------CC------------------CcchheeeecHHHeEE
Confidence 6 999999975321 01 3999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE-c-CChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-G-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G-ag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+|+++++++++.+++...|||.. ....+. ++++++|+ | +|++|++++|+|+.+|+ +|+++++++++++.++++|+
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~~-~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~ 189 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALGM-LETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA 189 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHHH-HHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99999999999888888899754 455555 56666665 4 59999999999999999 89999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEE
Q 016978 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWK 318 (379)
Q Consensus 241 ~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~ 318 (379)
++++++++ .++.+.+++.+.+ ++|++||++|+.. ....+.+++++ |+++.+|.........++... +.+++++.
T Consensus 190 ~~~i~~~~--~~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 265 (324)
T cd08291 190 EYVLNSSD--PDFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIE 265 (324)
T ss_pred cEEEECCC--ccHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEE
Confidence 99998876 6788888888877 9999999999854 67789999996 999999875332211232222 23477887
Q ss_pred eeecCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 319 GTAFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 319 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
++....+. ...++++++++++ +.++ +.++++|+|+|+++|++.+.+++.. |++|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 266 GFWLTTWLQKLGPEVVKKLKKLVK-TELK--TTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred EEEHHHhhcccCHHHHHHHHHHHh-Cccc--cceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 77655432 2346777888887 6665 5688999999999999999998775 99874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=317.34 Aligned_cols=333 Identities=30% Similarity=0.517 Sum_probs=278.8
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. +++.++|.|++.+++|+|||.++++|+.|+....+..+...+|.++|+|++|+|+.+|++++.+++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999998876 99999999999999999999999999999999888765556688999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|+..+..+|+.|..|+.++++.|..-.. ++.. . .|+|++|+.++++ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------~g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVH-R------------------DGGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeec-C------------------CCcceeEEEechh-eEECCCCCCH
Confidence 99998889999999999999999953221 2211 1 2499999999999 9999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++++ ..+.++++++ ...++.+|++|||+|+|.+|++++|+|+.+|+ +|+++.+++++.++++++|+++++++.+
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~- 212 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD- 212 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc-
Confidence 999877 4677888876 77889999999999889999999999999999 8999988999999999999999998876
Q ss_pred CchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCcc
Q 016978 250 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKS 327 (379)
Q Consensus 250 ~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 327 (379)
.++.+.+.+.+++ ++|++|||.|+...+..++++++++ |+++.+|.... ...++...+.. ++++.+.. ...
T Consensus 213 -~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 285 (337)
T cd08261 213 -EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG--PVTFPDPEFHKKELTILGSR---NAT 285 (337)
T ss_pred -cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC--CCccCHHHHHhCCCEEEEec---cCC
Confidence 5688888888776 8999999998877899999999996 99999986542 22233222222 45555442 123
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-ee-EEEEec
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD-CL-RCVLKM 377 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~-~~-Kvvi~~ 377 (379)
...+.++++++.++.+.+.+.+...|+++++++|++.+.+++ .. |+|+++
T Consensus 286 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 286 REDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred hhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 357888999999999987444778999999999999999884 54 999875
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=318.06 Aligned_cols=334 Identities=28% Similarity=0.441 Sum_probs=277.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||++++.++++ +.+.+.|.|+| .+++|+||+.++++|++|+..+.|..+. ..|.++|||++|+|+++|++++.+++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 78999998887 99999999986 8999999999999999999988876543 357899999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~ 166 (379)
|+|++.....|+.|.+|..+..+.|.+... +|.. ++| +|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAF-VDG------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCC-CCC------------------ceEEEEEcchhhCceEECCCC
Confidence 999886677899999999999999986442 3322 444 99999999975 99999999
Q ss_pred CCccccc-----cccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 167 APLDKVC-----LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 167 ~~~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
++++.+. ++...+.+||+++ ..+++.+|++|+|.|+|++|++++|+|+++|+++++++++++++.++++++|++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~ 215 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT 215 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 9882222 1224678888876 567899999999998899999999999999996689998898899999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-ceeeeccEEEe
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVTGRVWKG 319 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~~~~~~i~~ 319 (379)
+++++.. .++.+.+.+.+++ ++|+++|++|++..+..++++++++ |+++.+|.... ...++. ..+.++.++.+
T Consensus 216 ~v~~~~~--~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~ 290 (345)
T cd08287 216 DIVAERG--EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG--GVELDVRELFFRNVGLAG 290 (345)
T ss_pred eEecCCc--ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC--CCccCHHHHHhcceEEEE
Confidence 9999876 6677888888777 8999999999878899999999996 99999987542 233333 22344677665
Q ss_pred eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 320 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
.... ....++++++++.++++.+.+++.+.++++++++|++.+.+.+..|++|+
T Consensus 291 ~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~ 344 (345)
T cd08287 291 GPAP---VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLR 344 (345)
T ss_pred ecCC---cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeC
Confidence 3221 23578889999999999876667899999999999999888776799986
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=317.64 Aligned_cols=335 Identities=30% Similarity=0.476 Sum_probs=279.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. +.+.+.+.|++.+++|+||+.++++|+.|+..+.|..+....|.++|+|++|+|+++|++++.+++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 68999998886 99999999999999999999999999999998888664334577899999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc-----eEecC
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-----VAKID 164 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-----~~~iP 164 (379)
+|++.++.+|+.|++|..++.++|...... |.. . .|+|++|+.++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------------------~g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKKF---GNL-Y------------------DGGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCccee---ccC-C------------------CCcceeeEEecccccccccEEECC
Confidence 999999999999999999999999876532 211 2 24999999999998 99999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++.+++.+ ..+.+||+++. ..++++|++|||+|+|.+|++++|+|+.+|++.|+++.+++++.+.++++|+++++
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~ 215 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI 215 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe
Confidence 99999998876 68889999874 45899999999998899999999999999994488888999999999999999998
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeec
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAF 322 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~ 322 (379)
++++ .++.+.+++.+.+ ++|+++||+++...+..++++++++ |+++.+|.........+.+..+. .+..+.+...
T Consensus 216 ~~~~--~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (343)
T cd08235 216 DAAE--EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYA 292 (343)
T ss_pred cCCc--cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEec
Confidence 8876 6788888887777 8999999999877789999999996 99999986433222222222222 2455554432
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
. ....++++++++.++.+.+.+.+..+|+++++.+|++.+.+++ . |+|++
T Consensus 293 ~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 293 A---SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred C---ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 2 2356888999999999876445678899999999999999988 6 99874
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=323.41 Aligned_cols=344 Identities=22% Similarity=0.292 Sum_probs=278.3
Q ss_pred Cccccceeeeeec--CCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC----------CCCCC-cccc
Q 016978 5 GQVITCKAAVAWE--PNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP----------EGLFP-CILG 68 (379)
Q Consensus 5 ~~~~~~~a~~~~~--~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~----------~~~~p-~~~G 68 (379)
-.|.+|||+++.. +++| +.+.++|.|.+.+++|+||+.++++|++|++...+... ....| .++|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 82 (398)
T TIGR01751 3 VVPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIG 82 (398)
T ss_pred ccchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecc
Confidence 3456899999955 5654 88999999999999999999999999999876655321 11123 2799
Q ss_pred cceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcce
Q 016978 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTST 148 (379)
Q Consensus 69 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (379)
||++|+|+++|++++.+++||+|++.+...|++|++|..++++.|..... +|....+ |+
T Consensus 83 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~------------------g~ 141 (398)
T TIGR01751 83 SDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF------------------GS 141 (398)
T ss_pred cceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC------------------cc
Confidence 99999999999999999999999999999999999999999999976542 3322122 49
Q ss_pred eeeeEEecCcceEecCCCCCccccccccccchhhhhhhhh--ccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE
Q 016978 149 FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (379)
Q Consensus 149 ~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v 225 (379)
|++|+.++.+.++++|+++++++++.+.+.+.+||+++.. .+++.+|++|||+|+ |++|++++|+|+.+|+ +++++
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~ 220 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAV 220 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEE
Confidence 9999999999999999999999999999999999998754 467899999999998 9999999999999999 77888
Q ss_pred cCChhHHHHHHhcCCceEeCCCCCC--------------------chHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHH
Q 016978 226 DIDPKKFDRAKNFGVTEFVNPKDHD--------------------KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALEC 284 (379)
Q Consensus 226 ~~~~~~~~~~~~lg~~~v~~~~~~~--------------------~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~ 284 (379)
++++++.+.++++|+++++++++++ ..+.+.+.+.+++ ++|++|||+|. ..+..++++
T Consensus 221 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~ 299 (398)
T TIGR01751 221 VSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFV 299 (398)
T ss_pred cCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHh
Confidence 8889999999999999999875421 1355667778876 89999999997 668999999
Q ss_pred hccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHH
Q 016978 285 CHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 363 (379)
Q Consensus 285 l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~ 363 (379)
++++ |+++.+|..... ...++...+ ..+.++.+..+.. ..++.++++++.++++.+ .+.++++++|+++|++
T Consensus 300 l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~--~~~~~~~l~~~~~a~~ 372 (398)
T TIGR01751 300 CRRG-GMVVICGGTTGY-NHDYDNRYLWMRQKRIQGSHFAN---LREAWEANRLVAKGRIDP--TLSKVYPLEEIGQAHQ 372 (398)
T ss_pred hccC-CEEEEEccccCC-CCCcCHHHHhhcccEEEccccCc---HHHHHHHHHHHHCCCccc--ceeeEEcHHHHHHHHH
Confidence 9996 999999875431 122222222 2255566554432 245788999999998874 3779999999999999
Q ss_pred HHhcCCee-EEEEecC
Q 016978 364 YMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 364 ~~~~~~~~-Kvvi~~~ 378 (379)
.+.+++.. |+|+++.
T Consensus 373 ~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 373 DVHRNHHQGNVAVLVL 388 (398)
T ss_pred HHHcCCCCceEEEEeC
Confidence 99988876 9998763
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=313.59 Aligned_cols=316 Identities=26% Similarity=0.395 Sum_probs=262.9
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. ++++++|.|++.+++|+||+.++++|++|+....|..+ +|.++|||++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 68999998765 99999999999999999999999999999998888654 5788999999999999997 67999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|...+..+|+.|.+|+.+.++.|.+... .+....+| +|++|+.++.+.++++|++++.
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~ 132 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG------------------AFAEYLTLPLENLHVVPDLVPD 132 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC------------------ceEEEEEechHHeEECcCCCCH
Confidence 99999999999999999999999998653 22211233 9999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++.+ ..+.++|. +.+..++++|++|||+|+|.+|++++|+|+.+|+ +|+++..++++.++++++|++.++++++
T Consensus 133 ~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~- 208 (319)
T cd08242 133 EQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA- 208 (319)
T ss_pred HHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc-
Confidence 888764 34556666 4577889999999999989999999999999999 6999988999999999999988877643
Q ss_pred CchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCcc
Q 016978 250 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKS 327 (379)
Q Consensus 250 ~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 327 (379)
. +.+ ++|+++||+|+...+..++++++++ |+++..+.... ...++...+ .++.++.+...+
T Consensus 209 -~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~---- 271 (319)
T cd08242 209 -E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYAG--PASFDLTKAVVNEITLVGSRCG---- 271 (319)
T ss_pred -c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCC--CCccCHHHheecceEEEEEecc----
Confidence 1 233 8999999999877789999999996 99998776432 223332222 236666665432
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEe
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~ 376 (379)
.++++++++.++++++.+++.+.|+++++++|++.+.++...|+||+
T Consensus 272 --~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~ 318 (319)
T cd08242 272 --PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLR 318 (319)
T ss_pred --cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeC
Confidence 37889999999999766668899999999999999987775699986
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=315.43 Aligned_cols=324 Identities=22% Similarity=0.369 Sum_probs=262.0
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC-----------CCCCCcccccceeEEEEEe
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----------EGLFPCILGHEAAGIVESV 78 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~~G~V~~v 78 (379)
|||+++.++ ++++++++.|++.+++|+||+.++++|+.|++...|... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999876 599999999999999999999999999999998877321 2235788999999999999
Q ss_pred CCCCCC-cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 79 GEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 79 G~~v~~-~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
|+++++ +++||+|++.+...|+.|..|..+..+ .. .|+|++|+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~--------------~~------------------~g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP--------------EA------------------PGGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc--------------CC------------------CCceeeeEEech
Confidence 999997 999999999999999999999432110 01 249999999999
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+.++++|+++++++++ ++.++++||++ ...+++++|++|||+|+|++|.+++|+|+.+|+..++++++++++.+++++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999999877 55688899998 578899999999999889999999999999999668888889999999999
Q ss_pred cCCceEeCCCCCCc--hHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eee
Q 016978 238 FGVTEFVNPKDHDK--PIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVT 313 (379)
Q Consensus 238 lg~~~v~~~~~~~~--~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~ 313 (379)
+|++++++++.... .+. .+.+...+ ++|++||+.|+...+..++++++++ |+++.+|....... ..+.. +.+
T Consensus 205 ~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~--~~~~~~~~~ 280 (341)
T cd08262 205 MGADIVVDPAADSPFAAWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESDN--IEPALAIRK 280 (341)
T ss_pred cCCcEEEcCCCcCHHHHHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCCc--cCHHHHhhc
Confidence 99998998765211 232 34444445 8999999999865788999999996 99999987532222 11111 223
Q ss_pred ccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 314 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
+.++.+.... ..+++.+++++++++.+.+.+++.+.|+++++++|++.+.+++.. |+|++
T Consensus 281 ~~~~~~~~~~---~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 281 ELTLQFSLGY---TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred ceEEEEEecc---cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 5555543321 234788999999999998766778999999999999999988876 99874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=316.42 Aligned_cols=329 Identities=25% Similarity=0.397 Sum_probs=276.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.++++++.++++|.|.+.+++|+||+.++++|++|+....|..+..++|.++|||++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 78999999998899999999999999999999999999999998888766556788999999999999999998999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+..+|+.|.+|..++++.|..... +|.. .+| +|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEE-LDG------------------FFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccc-cCc------------------eeeeeeecchhceEECCCCCCH
Confidence 99999888999999999999999987653 3322 234 9999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
.+++.+++.+.+||+++... ++.++++|||+|+ |.+|++++|+|+.+|+ +++++.+++++.+.++++ ++++++++
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~- 214 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS- 214 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-
Confidence 99999999999999987555 8999999999988 9999999999999999 889888999999999888 77666553
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc--cccCcceeeeccEEEeeecCCCc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE--ISTRPFQLVTGRVWKGTAFGGFK 326 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 326 (379)
++.+.+++. +++|+++||+|+ ..+..++++++++ |+++.+|....... ..+... +.+++++.+... .
T Consensus 215 ---~~~~~v~~~--~~~d~~ld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~ 283 (334)
T PRK13771 215 ---KFSEEVKKI--GGADIVIETVGT-PTLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYI-ILKDIEIIGHIS---A 283 (334)
T ss_pred ---hHHHHHHhc--CCCcEEEEcCCh-HHHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHH-HhcccEEEEecC---C
Confidence 355556554 379999999998 4589999999996 99999997543222 222222 334677766532 2
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.+.+++.+++++.++.++. .+.+.|+++|+++|++.+.+++.. |+++..
T Consensus 284 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 284 TKRDVEEALKLVAEGKIKP--VIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred CHHHHHHHHHHHHcCCCcc--eEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 3467889999999998873 467899999999999999987765 998864
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=318.37 Aligned_cols=336 Identities=25% Similarity=0.393 Sum_probs=270.0
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC------C-CCCCCcccccceeEEEEEeCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD------P-EGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+.+.++..+ . ++++++|.|++.+++|+||+.++++|++|+..+.+.. + ..++|.++|||++|+|+++|+++
T Consensus 29 ~~~~~~~~~-~-~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v 106 (384)
T cd08265 29 LGSKVWRYP-E-LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV 106 (384)
T ss_pred ceeEEEeCC-C-EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence 455555543 3 9999999999999999999999999999988776321 1 13568899999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
+.+++||+|++.+..+|+.|..|..++++.|..... .|.. .+| +|++|+.++.+.+++
T Consensus 107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~-~~g------------------~~~~~v~v~~~~~~~ 164 (384)
T cd08265 107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFS-ADG------------------AFAEYIAVNARYAWE 164 (384)
T ss_pred CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeec-CCC------------------cceeeEEechHHeEE
Confidence 999999999999999999999999999999996552 3322 234 999999999999999
Q ss_pred cCCCC-------Cccccccccccchhhhhhhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 016978 163 IDPQA-------PLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (379)
Q Consensus 163 iP~~~-------~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~ 234 (379)
+|+++ +++ +++++.++++||+++... .++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|.++
T Consensus 165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~ 243 (384)
T cd08265 165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL 243 (384)
T ss_pred CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 99864 444 555666888999988666 689999999999889999999999999998779999889999999
Q ss_pred HHhcCCceEeCCCCC-CchHHHHHHHhcCC-CccEEEEcCCC-HHHHHHHHHHhccCCceEEEEccCCCCcccccCccee
Q 016978 235 AKNFGVTEFVNPKDH-DKPIQQVLVDLTDG-GVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL 311 (379)
Q Consensus 235 ~~~lg~~~v~~~~~~-~~~~~~~i~~~~~~-g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~ 311 (379)
++++|+++++++++. ..++...+++.+.+ ++|+|+|+.|+ ...+..++++++++ |+++.+|.... ..++.+..+
T Consensus 244 ~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~ 320 (384)
T cd08265 244 AKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT--TVPLHLEVL 320 (384)
T ss_pred HHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC--CCcccHHHH
Confidence 999999999887642 13677888888887 99999999987 34688999999996 99999986532 222222222
Q ss_pred -eeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEE
Q 016978 312 -VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 375 (379)
Q Consensus 312 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi 375 (379)
....++.+.... .....+.++++++.++.+.+.+++.+.|+++++++|++.+.++...|+|+
T Consensus 321 ~~~~~~l~~~~~~--~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 321 QVRRAQIVGAQGH--SGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred hhCceEEEEeecc--CCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 124455554321 12246889999999999987666788999999999999976665448875
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=312.63 Aligned_cols=333 Identities=26% Similarity=0.415 Sum_probs=273.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++.+..++++|.|++.+++|+||+.++++|++|+..+.|..+. ..|.++|||++|+|+.+|++++.+++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 799999998885449999999999999999999999999999888876543 2367899999999999999999999999
Q ss_pred EEeecC-CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 90 ~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
+|++.+ ..+|+.|++|..+..+.|.+... .|.. .+| +|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~g------------------~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYT-VDG------------------GMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCcc-ccC------------------cceeEEEEchHHeEeCCCCCC
Confidence 998765 46899999999999999987653 3322 234 999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+.+++.+++.+.|||+++ ..+++++|++|||+|+|++|++++++|+. +|+ +|+++++++++++.++++|++.+++++
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~ 215 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK 215 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEeccc
Confidence 999999999999999986 77889999999999999999999999998 499 899999999999999999999988875
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 326 (379)
. ..++.+.+++..+ ++|.++++.++...+..++++++++ |+++.+|.... .++++...+. .+..+.++...
T Consensus 216 ~-~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 287 (338)
T PRK09422 216 R-VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE--SMDLSIPRLVLDGIEVVGSLVG--- 287 (338)
T ss_pred c-cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC--CceecHHHHhhcCcEEEEecCC---
Confidence 3 1346666776665 6896655556668899999999996 99999987532 2233322222 25555554432
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
...+++++++++.++.+.+ .+ ..++++++++|++.+.+++.. |+++.+.
T Consensus 288 ~~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 288 TRQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred CHHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 2357888999999998864 34 458999999999999988876 9998765
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=312.31 Aligned_cols=333 Identities=31% Similarity=0.475 Sum_probs=280.6
Q ss_pred ceeeeeecCCCC-eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC-CCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPNKP-LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~~~-~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||++++..++++ +.+.+.|.|.+.+++|+|++.++++|+.|+....|..+ ..++|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 799999999998 67888889999999999999999999999999888765 2356788999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.+..+|+.|.+|+.++.+.|..... .|.. .+ |+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLG-ID------------------GGFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccc-cC------------------CcceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999965432 2222 23 399999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++.+++.++..+.+||+++....+++++++|||.|+|++|++++++|+.+|+ +|+++++++++.+.++++|++++++..
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~ 217 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL 217 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence 9999999999999999998888889999999999889999999999999999 799999999999999999999888776
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
+ ..+.+.+ +...+ ++|+++||+|....+..++++++++ |+++.+|.... ...++...+.. +.++.++...
T Consensus 218 ~--~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 289 (338)
T cd08254 218 D--DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD--KLTVDLSDLIARELRIIGSFGG-- 289 (338)
T ss_pred C--cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC--CCccCHHHHhhCccEEEEeccC--
Confidence 5 4555555 44455 8999999999877899999999996 99999987532 22233333333 5555554322
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
....+..+++++.++.+.+. .+.+++++++++++.+.+++.. |+|+++
T Consensus 290 -~~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 290 -TPEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred -CHHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 23578889999999998864 4789999999999999988876 999864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=313.01 Aligned_cols=331 Identities=31% Similarity=0.482 Sum_probs=269.2
Q ss_pred eeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCC-CCC--CCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPE--GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 12 a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~-~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|+++.++.. +.+++.|.|++.+++|+||+.++++|+.|+..+.+. ... ..+|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 457788865 999999999999999999999999999998876422 111 1357789999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+..+|+.|++|+.+.+++|.+.... +.... .|+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA---ATPPV------------------DGTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc---ccccC------------------CCceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999864321 10001 24999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++++.+ ..+.+|++++ +.+++++|++|||.|+|++|++++|+|+.+|+++|+++.+++++.++++++|+++++++++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 216 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT 216 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence 9998877 4778899885 8889999999999988999999999999999944899989999999999999999998876
Q ss_pred CCch---HHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 249 HDKP---IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 249 ~~~~---~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
.+ +.+.+.+.+.+ ++|++|||.|+...+..++++++++ |+++.+|..... ..++.... ..+..+.+....
T Consensus 217 --~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (343)
T cd05285 217 --EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPE--VTLPLSAASLREIDIRGVFRY 291 (343)
T ss_pred --ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCC--CccCHHHHhhCCcEEEEeccC
Confidence 34 36777777776 8999999999866799999999996 999999864322 22221111 224555544322
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEE
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC--LRCVL 375 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~--~Kvvi 375 (379)
...++++++++.++.+.+.+.+.++|+++++.+|++.+.+++. .|++|
T Consensus 292 ----~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 292 ----ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred ----hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 2578889999999987655557789999999999999998863 49998
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=310.94 Aligned_cols=335 Identities=30% Similarity=0.442 Sum_probs=271.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC---CCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++++++..+.+.+.+.|+|.+++|+||+.++++|+.|+.++.+.. .....|.++|+|++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999888779999999999999999999999999999988755432 1224567899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+.++|+.|.+|..+++++|.... ..|.. . .|+|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------~g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVD-T------------------DGCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccc---eEecc-C------------------CCcceEEEEechHHcEECcCC
Confidence 9999999999999999999999999997532 22211 2 349999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++++.+ +++..+.++++++. ....+|++|||.|+|++|++++|+|+.+|+.+|++++++++|.++++++|+++++++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 215 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP 215 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence 998555 45557778887654 356789999999889999999999999998668888888999999999999998887
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
+. .++. .+++..++ ++|++|||+|+.+.+..++++++++ |+++.+|.......+.+....++.+..+.+....
T Consensus 216 ~~--~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 289 (341)
T cd05281 216 RE--EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGR-- 289 (341)
T ss_pred cc--ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCCcccccchhhhccceEEEEEecC--
Confidence 65 5666 77777776 9999999999878889999999996 9999998754322222221122335556554321
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.....+.++++++.++.+.+.+.+...++++++++|++.+.+++ . |+|++
T Consensus 290 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~ 340 (341)
T cd05281 290 KMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLY 340 (341)
T ss_pred CcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEec
Confidence 12345778999999999886666778899999999999999888 6 99986
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=312.12 Aligned_cols=334 Identities=28% Similarity=0.401 Sum_probs=274.5
Q ss_pred eeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCE
Q 016978 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (379)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~ 90 (379)
|++..++.+..+.+++++.|++.+++|+||+.++++|++|+..+.|.....++|.++|||++|+|+++|++++.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 46777777766999999999999999999999999999999999887755567899999999999999999999999999
Q ss_pred Ee-ecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 91 VI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 91 V~-~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
|+ ......|++|.+|.++..+.|....... +| +........|+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-------NG--------KYPDGTITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhcc-------cc--------cccCCCcCCCcceeEEEechhheEECCCCCCH
Confidence 97 4456789999999999999998765320 00 00001122459999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++.+.+...+||+++.. .++++|++|+|.|+|++|++++++|+.+|+ +++++++++++.+.++++|++.+++...
T Consensus 146 ~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~- 222 (337)
T cd05283 146 AAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD- 222 (337)
T ss_pred HHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc-
Confidence 9999999999999998644 568999999998889999999999999999 8999999999999999999999887654
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCCccc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGFKSR 328 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 328 (379)
.++.. . ..+++|++|||+|....+.+++++++++ |+++.+|...... .+++..+ .++.++.+..... .
T Consensus 223 -~~~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~~---~ 291 (337)
T cd05283 223 -PEAMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPL--PVPPFPLIFGRKSVAGSLIGG---R 291 (337)
T ss_pred -hhhhh---h-ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCCCC--ccCHHHHhcCceEEEEecccC---H
Confidence 33322 1 1348999999999865689999999996 9999998754322 3344442 3478888776542 3
Q ss_pred ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 329 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.++..+++++.++++.+ . .+.|+++++++||+.+.+++.. |+|++
T Consensus 292 ~~~~~~~~~~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 292 KETQEMLDFAAEHGIKP--W-VEVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHHHHHHHHHhCCCcc--c-eEEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 57889999999998864 3 4789999999999999999876 98874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=310.48 Aligned_cols=336 Identities=29% Similarity=0.473 Sum_probs=276.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++++.++ +.+++.+.|++.+++|+||+.++++|+.|+....+.+ ....|.++|+|++|+|+.+|++++.+++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~-~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG-AYHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCC-CCCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 78999999876 9999999999999999999999999999998887765 224578899999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+...|+.|++|..+.+..|++... +|.. .+ |+|++|+.+|.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSR-RD------------------GAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---Eecc-cC------------------CcccceEEechHHeEECcCCCCH
Confidence 99999988999999999999999988643 2321 23 49999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++++++ ..+.+||+++. ..+++++++|||+|+|.+|++++|+|+.+|+++++++.+++++.+.++++|++.++++++
T Consensus 137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~- 213 (343)
T cd08236 137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE- 213 (343)
T ss_pred HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc-
Confidence 999887 57789999874 778999999999988999999999999999944999988899999999999999998876
Q ss_pred CchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcc-e-eeeccEEEeeecCCC-
Q 016978 250 DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF-Q-LVTGRVWKGTAFGGF- 325 (379)
Q Consensus 250 ~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~- 325 (379)
.. ...+++...+ ++|++|||.|+...+..++++++++ |+++.+|.......+....+ . +.++.++.+......
T Consensus 214 -~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (343)
T cd08236 214 -ED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSA 290 (343)
T ss_pred -cc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeecccc
Confidence 44 6667777766 8999999998877889999999996 99999997543211111111 1 133666666654321
Q ss_pred -cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhc-CCee-EEEE
Q 016978 326 -KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG-GDCL-RCVL 375 (379)
Q Consensus 326 -~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~-~~~~-Kvvi 375 (379)
.....+++++++++++++.+.+.+...+++++++++++.+.+ ++.. |+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 291 PFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred ccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 123567889999999998754456788999999999999998 5544 8874
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=311.18 Aligned_cols=316 Identities=19% Similarity=0.267 Sum_probs=250.1
Q ss_pred ccccceeeeeec-CCC-C----eEEEE---eeCCC-CCCCeEEEEEeeeeccccccccccCCCCCCCCCccccc--ceeE
Q 016978 6 QVITCKAAVAWE-PNK-P----LVIED---VQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH--EAAG 73 (379)
Q Consensus 6 ~~~~~~a~~~~~-~~~-~----~~~~~---~~~p~-~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~--e~~G 73 (379)
++.+.|++++.+ +.+ | |.+.+ ++.|. +++||||||+.|+++|+.|+..+.+.......|.++|+ |++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G 84 (348)
T PLN03154 5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFG 84 (348)
T ss_pred ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeE
Confidence 445568888844 322 2 77776 46663 48999999999999999987644332222245889998 8899
Q ss_pred EEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeE
Q 016978 74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT 153 (379)
Q Consensus 74 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 153 (379)
+|..+|++++.+++||+|+.. |+|+||+
T Consensus 85 ~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey~ 112 (348)
T PLN03154 85 VSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEYS 112 (348)
T ss_pred EEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEEE
Confidence 999999999999999999621 2899999
Q ss_pred EecCcc--eEe--cCCCCCcc-ccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 154 VVHDVS--VAK--IDPQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 154 ~v~~~~--~~~--iP~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
.++.+. +++ +|++++++ +|+++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++
T Consensus 113 ~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~ 191 (348)
T PLN03154 113 LIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAG 191 (348)
T ss_pred EEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcC
Confidence 998753 544 59999986 688899999999999888889999999999988 9999999999999999 8999989
Q ss_pred ChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCc-cc-
Q 016978 228 DPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EI- 304 (379)
Q Consensus 228 ~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~-~~- 304 (379)
++++++.++ ++|+++++++++ ..++.+.+++.+++++|++||++|+ ..+..++++++++ |+++.+|...... ..
T Consensus 192 ~~~k~~~~~~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~ 268 (348)
T PLN03154 192 SSQKVDLLKNKLGFDEAFNYKE-EPDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLNMKIH-GRIAVCGMVSLNSLSAS 268 (348)
T ss_pred CHHHHHHHHHhcCCCEEEECCC-cccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHHhccC-CEEEEECccccCCCCCC
Confidence 999999987 799999998864 1367777877776689999999998 5789999999996 9999999754321 00
Q ss_pred --ccCccee-eeccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 305 --STRPFQL-VTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 305 --~~~~~~~-~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
.+++..+ .+++++.+++.+.+. ..+.++++++++++|++++. +.++|+|+|+++|++.+++++.. |+||+++
T Consensus 269 ~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~--~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~ 346 (348)
T PLN03154 269 QGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYI--EDMSEGLESAPAALVGLFSGKNVGKQVIRVA 346 (348)
T ss_pred CCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCc--eecccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence 1122222 237778877654321 22457789999999999853 67789999999999999999887 9999985
Q ss_pred C
Q 016978 379 D 379 (379)
Q Consensus 379 ~ 379 (379)
+
T Consensus 347 ~ 347 (348)
T PLN03154 347 K 347 (348)
T ss_pred C
Confidence 3
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=307.41 Aligned_cols=334 Identities=32% Similarity=0.497 Sum_probs=280.2
Q ss_pred ceeeeeecCC-CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
|||+++.+++ ..+.+++++.|.+.+++|+||+.++++|++|..++.|..+. .+.|.++|+|++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7899999887 23999999999999999999999999999999988876643 245678999999999999999999999
Q ss_pred CCEEeecC-CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 88 GDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 88 Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
||+|++.+ ..+|+.|.+|+.+..+.|.+... .|.. .+ |+|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYT-VD------------------GTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccc-cC------------------CcceeEEEeccccEEECCCC
Confidence 99999876 57899999999999999987643 2221 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.++..+.|||+++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.++++|++.+++
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~ 216 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVD 216 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEc
Confidence 9999999999999999998755 58999999999988 7799999999999999 8999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
+.+ .++...+.+.+++ ++|++||+.++...+..++++++++ |+++.+|.... ...+++...+. ++.++.+....
T Consensus 217 ~~~--~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (341)
T cd08297 217 FKK--SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPG-GFIPLDPFDLVLRGITIVGSLVG 292 (341)
T ss_pred CCC--ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCC-CCCCCCHHHHHhcccEEEEeccC
Confidence 876 5777888888766 8999999888778899999999996 99999987542 22234333322 36666654332
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...+++++++++.++++.+ .+ ..|+++++++|++.+.+++.. |+|++|
T Consensus 293 ---~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 293 ---TRQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred ---CHHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 2367889999999999864 23 679999999999999988876 999875
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=306.70 Aligned_cols=329 Identities=34% Similarity=0.545 Sum_probs=273.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++..+++++.++++|.|.+.+++|+|++.++++|++|+..+.|..+....|.++|||++|+|+.+|++++.+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999988666699999999999999999999999999999999988776666788999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+...|+.|.+|..+..+.|.+.. .+|.. .+ |+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~------------------g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEE-VD------------------GGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCcc---ccccc-cC------------------CeeeeEEEechhheEECCCCCCH
Confidence 9999998999999999999999998752 24422 23 49999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
++++.+++++.+||+++.. +++.++++|||+|+ |++|++++++++..|+ +|+++.+++++.+.++++|.+.+++..+
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK 216 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecHH
Confidence 9999999999999998766 88999999999988 9999999999999999 7888888889999999899887775432
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcc-eeeeccEEEeeecCCCcc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF-QLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 327 (379)
+.+.+.+.. ++|++++++|... ...++++++++ |+++.+|....... .+... ..+++..+.+... ..
T Consensus 217 ----~~~~~~~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~ 284 (332)
T cd08259 217 ----FSEDVKKLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPDPA-PLRPGLLILKEIRIIGSIS---AT 284 (332)
T ss_pred ----HHHHHHhcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEEcCCCCCCc-CCCHHHHHhCCcEEEEecC---CC
Confidence 555555543 7999999999844 88999999996 99999987543211 11111 1123455544421 23
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
..+++++++++.++.+.+ .+.++|+++++++|++.+.+++.. |+|++
T Consensus 285 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 285 KADVEEALKLVKEGKIKP--VIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHHHHHHHHHHHcCCCcc--ceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 457888999999998774 367899999999999999988876 88874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=308.09 Aligned_cols=269 Identities=26% Similarity=0.411 Sum_probs=221.1
Q ss_pred ccccceeEEEEEeCCCCC------CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCc
Q 016978 66 ILGHEAAGIVESVGEGVT------EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKP 139 (379)
Q Consensus 66 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~ 139 (379)
++|||++|+|+++|++|+ ++++||||++.+..+|+.|.+|+.++++.|.+... +|.....+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~---------- 67 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDS---------- 67 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccC----------
Confidence 589999999999999999 89999999999999999999999999999997653 22210000
Q ss_pred ccccCCcceeeeeEEecCc-ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC
Q 016978 140 IYHFMGTSTFSQYTVVHDV-SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG 218 (379)
Q Consensus 140 ~~~~~~~g~~~~~~~v~~~-~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g 218 (379)
.....|+|+||+.+|++ .++++|+++++++++.+++.+.|+|+++ +.....+|++|||+|+|++|++++|+|+.+|
T Consensus 68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 00012499999999997 7999999999999999998999999986 4456679999999999999999999999999
Q ss_pred CCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 219 ASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 219 ~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+++|++++.+++|+++++++|+++++++.+ ..+.+++.+.+ ++|++||++|.+..++.++++++++ |+++.+|.
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~ 219 (280)
T TIGR03366 145 AARVVAADPSPDRRELALSFGATALAEPEV----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGS 219 (280)
T ss_pred CCEEEEECCCHHHHHHHHHcCCcEecCchh----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEecc
Confidence 966999989999999999999999887643 24556667666 8999999999988899999999996 99999997
Q ss_pred CCCCcccccCcceeee-ccEEEeeecCCCcccccHHHHHHHHHc--CCCCCCCceeeeeecchH
Q 016978 298 AASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEI 358 (379)
Q Consensus 298 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~~~~~i 358 (379)
.......++++..++. ++++.++... ...+++++++++.+ +++++.++++++||++|+
T Consensus 220 ~~~~~~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 220 VFPGGPVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred CCCCCceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 5432344555555544 8888887543 23679999999998 467777889999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=307.34 Aligned_cols=309 Identities=23% Similarity=0.298 Sum_probs=258.3
Q ss_pred ceeeeeecCCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC-CCCCCcccccceeEEEEEeCCCCCCc
Q 016978 10 CKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
|||+++.+++.| +.++++|.|.+.++||+|||.++++|+.|+..+.|..+ ....|.++|||++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999888764 78899999999999999999999999999999888765 23568899999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|++.+. + |+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV-------------------------------H------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC-------------------------------C------------------CcceeEEEEchHHeEECCC
Confidence 99999975421 2 3999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
++++++++.+++.+.++|+++ ..+++++|++|||+|+ |.+|++++|+|+.+|+ +++++.+++++.+.++++|+++++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVV 189 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEE
Confidence 999999999988889999976 5688999999999987 9999999999999999 788888888888888889999998
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeec
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAF 322 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~ 322 (379)
++++ .++.+.+.+.+.+ ++|++|||+|+ ..+..++++++++ |+++.+|... ....++++... .++.++.++..
T Consensus 190 ~~~~--~~~~~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 264 (324)
T cd08292 190 STEQ--PGWQDKVREAAGGAPISVALDSVGG-KLAGELLSLLGEG-GTLVSFGSMS-GEPMQISSGDLIFKQATVRGFWG 264 (324)
T ss_pred cCCC--chHHHHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCC-cEEEEEecCC-CCCCcCCHHHHhhCCCEEEEEEc
Confidence 8866 6788889998887 99999999998 4588999999996 9999998752 22233332222 34777777665
Q ss_pred CCCc-------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 323 GGFK-------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 323 ~~~~-------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.... ....+..+++++.++.+.+. +.+.|+++|+++|++.+.+++.. |++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 265 GRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 4321 12357789999999998854 46889999999999999877665 88874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=306.78 Aligned_cols=331 Identities=27% Similarity=0.413 Sum_probs=264.1
Q ss_pred eeecCCCCeEEEEeeCCCCCCCeEEEEEeeeecccccccccc-CCCCC--CCCCcccccceeEEEEEeCCCCCCcCCCCE
Q 016978 14 VAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (379)
Q Consensus 14 ~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~-g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~ 90 (379)
++++.+. +.+++.+.|.+.+++|+||+.++++|++|+..+. +..+. ...|.++|+|++|+|+++|++++.+++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4667776 9999999999999999999999999999987763 33211 135778999999999999999999999999
Q ss_pred EeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCcc
Q 016978 91 VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLD 170 (379)
Q Consensus 91 V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~ 170 (379)
|++.+...|+.|.+|..+..+.|..... +|...++ ....|+|++|+.++.+.++++|++++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~--------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~ 143 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF--------------PHVQGGFREYLVVDASQCVPLPDGLSLR 143 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecccc--------------CCCCCceeeEEEechHHeEECcCCCCHH
Confidence 9999999999999999999999997532 2211000 0113499999999999999999999999
Q ss_pred ccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 171 KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 171 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
+|+. ..++++||+++...... +|++|||.|+|.+|++++|+|+.+|+++++++++++++.++++++|+++++++++
T Consensus 144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~-- 219 (339)
T cd08232 144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR-- 219 (339)
T ss_pred Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc--
Confidence 8876 46788899987665556 9999999988999999999999999867899988999999999999999998765
Q ss_pred chHHHHHHHhc-C-CCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecCCCcc
Q 016978 251 KPIQQVLVDLT-D-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 251 ~~~~~~i~~~~-~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 327 (379)
.++ .+.. . +++|+++|+.|....+..++++++++ |+++.+|.... ....++.. +.+++++.+... .
T Consensus 220 ~~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~----~ 288 (339)
T cd08232 220 DPL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGG--PVPLPLNALVAKELDLRGSFR----F 288 (339)
T ss_pred hhh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CccCcHHHHhhcceEEEEEec----C
Confidence 232 2222 2 26999999999767799999999996 99999986432 22222222 223556655432 2
Q ss_pred cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 328 RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...++++++++.++.+.+.+.+.++|+++++++|++.+.+++.. |+|+++
T Consensus 289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 289 DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 34688899999999988766678999999999999999887765 999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=280.80 Aligned_cols=320 Identities=23% Similarity=0.312 Sum_probs=259.3
Q ss_pred CCCCccccceeeeeecCCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEE
Q 016978 2 STEGQVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVES 77 (379)
Q Consensus 2 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~ 77 (379)
|++..+...|+++|.+.|+| +++++.++|....++|+||.+|+.|||+|+..+.|.+|.. ++|.+-|.|++|.|+.
T Consensus 12 sa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~ 91 (354)
T KOG0025|consen 12 SASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVA 91 (354)
T ss_pred cccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEE
Confidence 34566678899999999998 8899999998888889999999999999999999999887 7899999999999999
Q ss_pred eCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 78 vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
+|+++++|++||+|...+. +.|+|++|.+.++
T Consensus 92 vGs~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~e 123 (354)
T KOG0025|consen 92 VGSNVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFSE 123 (354)
T ss_pred ecCCcCccCCCCeEeecCC------------------------------------------------CCccceeeEeecc
Confidence 9999999999999975432 2459999999999
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH----H
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----F 232 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~----~ 232 (379)
+.+++++++++++.||++..+..|||..|.+..++.+||+|+-.|| +++|++.+|+|+++|+ +.|.+.++... .
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~ 202 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEELK 202 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHH
Confidence 9999999999999999999999999999999999999999999998 9999999999999999 55555565543 4
Q ss_pred HHHHhcCCceEeCCCCC-CchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce
Q 016978 233 DRAKNFGVTEFVNPKDH-DKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ 310 (379)
Q Consensus 233 ~~~~~lg~~~v~~~~~~-~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~ 310 (379)
+.++.+||++|+...+. +.+... ..... .+.+.|||+|+.. ..++.+.|.++ |+.+.||..+ ..++.++...
T Consensus 203 ~~Lk~lGA~~ViTeeel~~~~~~k---~~~~~~~prLalNcVGGks-a~~iar~L~~G-gtmvTYGGMS-kqPv~~~ts~ 276 (354)
T KOG0025|consen 203 KQLKSLGATEVITEEELRDRKMKK---FKGDNPRPRLALNCVGGKS-ATEIARYLERG-GTMVTYGGMS-KQPVTVPTSL 276 (354)
T ss_pred HHHHHcCCceEecHHHhcchhhhh---hhccCCCceEEEeccCchh-HHHHHHHHhcC-ceEEEecCcc-CCCcccccch
Confidence 55667999999865442 111111 11123 7899999999955 77888999997 9999999864 4555555544
Q ss_pred e-eeccEEEeeecCCCcccc--------cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEEecC
Q 016978 311 L-VTGRVWKGTAFGGFKSRS--------QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC--LRCVLKMQ 378 (379)
Q Consensus 311 ~-~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~--~Kvvi~~~ 378 (379)
+ +++++++|+|+..|.... ...++.+++..|+|...+ ....+|+|...|++...+... .|-+|.++
T Consensus 277 lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~--~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 277 LIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN--CEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred heeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc--ceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 4 449999999998874322 245678888999998653 366799999999886544333 26666654
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=302.35 Aligned_cols=331 Identities=30% Similarity=0.477 Sum_probs=273.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.+++. +.+.+.+.|++.+++|+||+.++++|+.|+....|..+.. +|.++|+|++|+|+.+|++++.+++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~-~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA-PPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC-CCcccccceEEEEEEeCCCCCCCCCCC
Confidence 78999998886 9999999999999999999999999999999888876533 678999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
+|++.+...|+.|.+|..++++.|..... .|.. .+ |+|++|+.++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVT-RN------------------GGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccC-CC------------------CcceeEEEecHHHcEECcCCCCH
Confidence 99999999999999999999999987642 2211 22 49999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
.+++.+ ..+.++++++ +.+++++|++|||+|+|.+|.+++++|+.+|+++|+++++++++.+.++++|++.++++++
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~- 213 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR- 213 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-
Confidence 998766 6778899887 7889999999999988999999999999999944888989999999999999988888765
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCccc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSR 328 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 328 (379)
.++... +....+++|++|||.|....+..++++++++ |+++.+|........++.+..+. .+.++.+... ..
T Consensus 214 -~~~~~~-~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 286 (334)
T cd08234 214 -EDPEAQ-KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFI----NP 286 (334)
T ss_pred -CCHHHH-HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEecc----CH
Confidence 344444 3333338999999998777899999999996 99999987543223344433333 2555555432 22
Q ss_pred ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 329 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
..++++++++.++++.+.+.+..+|+++++++|++.+.+ +.. |+|+
T Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 287 YTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 468889999999998866667889999999999999998 554 8886
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=301.76 Aligned_cols=332 Identities=27% Similarity=0.399 Sum_probs=268.4
Q ss_pred ecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC---CCCCCCcccccceeEEEEEeCCCCCCcCCCCEEe
Q 016978 16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD---PEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92 (379)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~ 92 (379)
++++.++++++.|.|+|.++||+||+.++++|+.|+..+.+.. ...++|.++|+|++|+|+++|++++.+++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 5788889999999999999999999999999999998765542 1224577899999999999999999999999999
Q ss_pred ecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCcccc
Q 016978 93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172 (379)
Q Consensus 93 ~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~a 172 (379)
+.+...|+.|..|..+..+.|..... +|.. .. |+|++|+.++++.++++|++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVD-TD------------------GCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---Eeec-CC------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999998643 2221 22 49999999999999999999998655
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCch
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~ 252 (379)
+++..+.+|++++ .....+|++|+|.|+|++|++++|+|+.+|++.|+++++++++.++++++|++.++++.. .+
T Consensus 143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~ 217 (340)
T TIGR00692 143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK--ED 217 (340)
T ss_pred -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc--cC
Confidence 4566788888875 345779999999888999999999999999944888888899999999999988888765 67
Q ss_pred HHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcccccH
Q 016978 253 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQV 331 (379)
Q Consensus 253 ~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 331 (379)
+.+.+.+...+ ++|++|||.|+...+...+++++++ |+++.+|.......+++....+..+.++.+... ....+.+
T Consensus 218 ~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 294 (340)
T TIGR00692 218 VVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITG--RHMFETW 294 (340)
T ss_pred HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCCCcccchhhhhhhcceEEEEEec--CCchhhH
Confidence 88888887776 8999999999877899999999996 999999875322222211111222455554431 1222457
Q ss_pred HHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 332 PWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 332 ~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
.+++++++++++++.+.+.+.++++++.++++.+.+++..|+|++|
T Consensus 295 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 295 YTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred HHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 7899999999998655578999999999999999877655999875
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=304.94 Aligned_cols=311 Identities=23% Similarity=0.281 Sum_probs=246.1
Q ss_pred cceeeeeecCCC-CeEEEEeeC----CCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccce--eEEEEEeCC
Q 016978 9 TCKAAVAWEPNK-PLVIEDVQV----APPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEA--AGIVESVGE 80 (379)
Q Consensus 9 ~~~a~~~~~~~~-~~~~~~~~~----p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--~G~V~~vG~ 80 (379)
-+|++....+.. .+.+++.+. |+|+++||||||.|++||+.|+..+.|..+. ...|.++|++. .|++..+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 356666544443 289999887 7899999999999999999999988885433 24578899754 456666888
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC-cc
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VS 159 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~ 159 (379)
.++.+++||+|+.. |+|+||+.+|+ ..
T Consensus 87 ~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~~ 114 (338)
T cd08295 87 GNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQD 114 (338)
T ss_pred CCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchhc
Confidence 88899999999621 28999999999 79
Q ss_pred eEecC-CCCCcc-ccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 160 VAKID-PQAPLD-KVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 160 ~~~iP-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
++++| +++++. +++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.+++++.++++
T Consensus 115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLK 193 (338)
T ss_pred eeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99995 678876 788899999999999878889999999999998 9999999999999999 7999889999999999
Q ss_pred h-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCccc----ccCccee
Q 016978 237 N-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI----STRPFQL 311 (379)
Q Consensus 237 ~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~----~~~~~~~ 311 (379)
+ +|+++++++.+ ..++.+.+++.+.+++|++||++|+ ..+..++++++++ |+++.+|........ ..+...+
T Consensus 194 ~~lGa~~vi~~~~-~~~~~~~i~~~~~~gvd~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~ 270 (338)
T cd08295 194 NKLGFDDAFNYKE-EPDLDAALKRYFPNGIDIYFDNVGG-KMLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNI 270 (338)
T ss_pred HhcCCceeEEcCC-cccHHHHHHHhCCCCcEEEEECCCH-HHHHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHHH
Confidence 8 99999998654 1367777777765699999999998 6699999999996 999999864321110 0111122
Q ss_pred -eeccEEEeeecCCCcc--cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 312 -VTGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 312 -~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
++++++.++....... ...+.++++++.++++++. +...|+++++++|++.+++++.. |+|+++
T Consensus 271 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 271 IYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred hhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 2356666654433211 2346778999999998864 45669999999999999988876 999874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=300.93 Aligned_cols=335 Identities=26% Similarity=0.395 Sum_probs=276.4
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++...+.+ +.+.+.+.|.+.+++|+|++.++++|++|+..+.|..+. ..+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 689999854433 778888888889999999999999999999988876542 25578899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+..+|+.|.+|.+++++.|.+... +|.. .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~------------------g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEH-VD------------------GGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccc-cC------------------cceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999997532 3322 22 38999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.+++++.+||+++.+..++.++++|||+|+ +.+|++++++++..|+ +++.+++++++.+.++.++.+.+++
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~ 217 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVID 217 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEe
Confidence 9999999999899999998888888999999999988 7999999999999999 7888889999999998888887776
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-ceeeeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 323 (379)
..+ .++.+.+.+.+.+ ++|++++++|. ..+..++++++++ |+++.+|..... ...... ..+..+.++.+....
T Consensus 218 ~~~--~~~~~~~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 292 (342)
T cd08266 218 YRK--EDFVREVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCGATTGY-EAPIDLRHVFWRQLSILGSTMG 292 (342)
T ss_pred cCC--hHHHHHHHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcC-CEEEEEecCCCC-CCCcCHHHHhhcceEEEEEecC
Confidence 654 5666777776665 89999999998 5588999999996 999999865432 222222 122336666655433
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
....+.++++++.++.+.+ ++.+.|+++++++|++.+.+++.. |+|++.
T Consensus 293 ---~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 293 ---TKAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred ---CHHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 2346888999999998774 367889999999999999887765 998863
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=301.15 Aligned_cols=320 Identities=28% Similarity=0.380 Sum_probs=258.2
Q ss_pred ceeeeeecCC-CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||++++..++ +.+.+.+.+.|++++++|+||+.++++|++|+..+.+ .....+|.++|||++|+|+.+|++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~-~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINA-VKVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhC-CCCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6899988776 3488888888889999999999999999999888764 2222457789999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.+...|+.|.+|+.+..+.|.+... +|.. .+ |+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVV-SN------------------GGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eecc-CC------------------CceeeEEEcCHHHceeCCCCCC
Confidence 999999999999999999999999997543 2321 22 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+++++.+++++.+||+++.. +++++|++|+|+|+ |++|++++++|+.+|+ +|+++. +.+.++++|++++++.+
T Consensus 138 ~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~ 211 (325)
T cd08264 138 DELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD 211 (325)
T ss_pred HHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence 99999999999999998754 88999999999998 9999999999999999 787774 23777889998888764
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 326 (379)
+ ..+.+++.+ +++|+++|++|+ ..+..++++++++ |+++.+|... .....++...+.. +.++.+...+
T Consensus 212 ~----~~~~l~~~~-~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (325)
T cd08264 212 E----VEEKVKEIT-KMADVVINSLGS-SFWDLSLSVLGRG-GRLVTFGTLT-GGEVKLDLSDLYSKQISIIGSTGG--- 280 (325)
T ss_pred H----HHHHHHHHh-CCCCEEEECCCH-HHHHHHHHhhccC-CEEEEEecCC-CCCCccCHHHHhhcCcEEEEccCC---
Confidence 3 345566666 689999999998 5799999999996 9999998742 1223333333332 4555555433
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EE
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RC 373 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kv 373 (379)
.+++++++++++...+ . .+.+.|+++|+++|++.+.+++.. |+
T Consensus 281 ~~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 281 TRKELLELVKIAKDLK--V--KVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred CHHHHHHHHHHHHcCC--c--eeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 2357888888885433 2 356889999999999998877654 54
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=302.63 Aligned_cols=299 Identities=19% Similarity=0.263 Sum_probs=231.5
Q ss_pred eEEEEeeCCCC-CCCeEEEEEeeeecccccccccc---CCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCc
Q 016978 22 LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWS---GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQA 97 (379)
Q Consensus 22 ~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~---g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 97 (379)
+++.+.|.|+| +++||||||.|+|||+.|+.... +.....++|.++|||++|+|+++|++++.+++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 88999999987 49999999999999999853322 2111235678999999999999999999999999997420
Q ss_pred CCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccc----cc
Q 016978 98 ECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK----VC 173 (379)
Q Consensus 98 ~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~----aa 173 (379)
++|+||+.++++.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 2799999999999999999865443 44
Q ss_pred cccccchhhhhhhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCC
Q 016978 174 LLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDH 249 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~ 249 (379)
+++.++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+.+++ +|+++++++++
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~- 210 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT- 210 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence 5667889999998788888877 99999988 9999999999999998679999899999999876 99999998876
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC-ccccc----Cc--ceeee--ccEEEee
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG-QEIST----RP--FQLVT--GRVWKGT 320 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~-~~~~~----~~--~~~~~--~~~i~~~ 320 (379)
.++.+.+++.+++++|++||++|+. .+..++++++++ |+++.+|..... ..... .+ ..+.. +.+....
T Consensus 211 -~~~~~~i~~~~~~gvd~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (345)
T cd08293 211 -DNVAERLRELCPEGVDVYFDNVGGE-ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERF 287 (345)
T ss_pred -CCHHHHHHHHCCCCceEEEECCCcH-HHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEE
Confidence 6788888888766999999999985 479999999996 999999853210 11111 00 01111 2222222
Q ss_pred ecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 321 AFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 321 ~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...... ....++++++++.++++++. ....++++++++|++.+.+++.. |+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 288 LVLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred EeeccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 111111 12346678889999998865 34557999999999999988876 999875
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=297.11 Aligned_cols=323 Identities=28% Similarity=0.383 Sum_probs=267.6
Q ss_pred ceeeeeecCCC----CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCc
Q 016978 10 CKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 10 ~~a~~~~~~~~----~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
||++++.+++. ++.+.+.+.|.+.+++|+||+.++++|++|+..+.|..+...+|.++|||++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68999998884 48888888888999999999999999999999988876655678899999999999999999999
Q ss_pred CCCCEEeecC-CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 86 QPGDHVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 86 ~~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
++||+|++.+ ..+|+.|.+|..+.+++|..... +|.. .+ |+|++|+.++.+.++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------g~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYT-VD------------------GGYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccc-cC------------------CceEEEEEecchhEEECC
Confidence 9999998754 36899999999999999997764 2322 23 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++.+++.+++.+.+||+++ +.++++++++|||+|+|++|++++++|+..|+ +|+++.+++++++.++++|++.++
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 216 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAG 216 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEe
Confidence 9999999999999999999987 88999999999999999999999999999998 899998999999999999998887
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 324 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (379)
+... . ..+++|+++++.+....++.++++++++ |+++.+|.... ....++...+..+..+.+....
T Consensus 217 ~~~~--~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~- 282 (329)
T cd08298 217 DSDD--L---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMS-DIPAFDYELLWGEKTIRSVANL- 282 (329)
T ss_pred ccCc--c---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCC-CCCccchhhhhCceEEEEecCC-
Confidence 7654 1 1237999999877778899999999996 99999885321 1111222222235555554322
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
....+.++++++.++.+.+ +.+.|+++++++|++.+.+++.. |+|+
T Consensus 283 --~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 283 --TRQDGEEFLKLAAEIPIKP---EVETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred --CHHHHHHHHHHHHcCCCCc---eEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 2346788899999998875 25889999999999999988776 8764
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=297.84 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=243.1
Q ss_pred cceeeeeec-C-CCC----eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 9 TCKAAVAWE-P-NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 9 ~~~a~~~~~-~-~~~----~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+||++++.+ + +.+ +++.+.|.|+|+++||+|||.+++||+.|.....+ ..++|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 589999988 3 443 88999999999999999999999999987653221 124688999999999995 44
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc---c
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV---S 159 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~---~ 159 (379)
+.+++||+|+.. ++|++|+.++.+ .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 679999999631 178999999999 9
Q ss_pred eEecCCCCCc-----cccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 016978 160 VAKIDPQAPL-----DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (379)
Q Consensus 160 ~~~iP~~~~~-----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~ 233 (379)
++++|+++++ ..+++++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.+++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 9999999982 2234677899999999888889999999999986 9999999999999999 8999999999999
Q ss_pred HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc--c---ccCc
Q 016978 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE--I---STRP 308 (379)
Q Consensus 234 ~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~--~---~~~~ 308 (379)
+++++|+++++++++ .++.+.+++.+++++|++||++|+ ..+..++++++++ |+++.+|....... . ....
T Consensus 183 ~l~~~Ga~~vi~~~~--~~~~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~ 258 (329)
T cd08294 183 WLKELGFDAVFNYKT--VSLEEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQ 258 (329)
T ss_pred HHHHcCCCEEEeCCC--ccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccH
Confidence 999999999999876 678888888776689999999998 6689999999996 99999985422111 0 1111
Q ss_pred c-eeeeccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 309 F-QLVTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 309 ~-~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
. .+.+++++.++....+. ....++++++++.++++++. ...+|+++++++|++.+.+++.. |+|+++
T Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 259 ETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred HHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 1 12336667665543321 12346678899999998865 34568999999999999998876 999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=296.33 Aligned_cols=327 Identities=31% Similarity=0.477 Sum_probs=268.7
Q ss_pred eeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCE
Q 016978 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDH 90 (379)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~ 90 (379)
||+++.++|..+.+++.|.|.+.+++|+|++.++++|++|+..+.|..+...+|.++|||++|+|+.+|++++.+++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68889988666999999999999999999999999999999998887655567889999999999999999999999999
Q ss_pred EeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCc
Q 016978 91 VIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPL 169 (379)
Q Consensus 91 V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~ 169 (379)
|++.+. ..|+.|.+|++++.++|.+.... +.. .. |+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~------------------g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNT---GYT-TQ------------------GGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCcccc---Ccc-cC------------------CccccEEEEcHHHeEECCCCCCH
Confidence 987654 67999999999999999986642 211 22 49999999999999999999999
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
.+++.+++...+||+++.. .++.++++|||+|+|.+|++++++|+.+|+ +|+++.+++++.+.++++|++.+++...
T Consensus 139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~- 215 (330)
T cd08245 139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA- 215 (330)
T ss_pred HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC-
Confidence 9999998899999998754 789999999999988899999999999999 8999999999999999999988887654
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCccc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSR 328 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 328 (379)
...... ..+++|+++|+.++...+..++++++++ |+++.+|..... ...+....+.. +.++.++..+. .
T Consensus 216 -~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~ 285 (330)
T cd08245 216 -ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESP-PFSPDIFPLIMKRQSIAGSTHGG---R 285 (330)
T ss_pred -cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCC-ccccchHHHHhCCCEEEEeccCC---H
Confidence 222222 2247999999988778899999999996 999999865322 11111222222 55555554432 2
Q ss_pred ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 329 SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
..++++++++.++.+.+ ..+.|+++++++|++.+.+++.. |+|+
T Consensus 286 ~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 286 ADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 46788889999998874 34789999999999999988876 7764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=299.69 Aligned_cols=323 Identities=25% Similarity=0.285 Sum_probs=257.1
Q ss_pred ceeeeeecCCCC--eEEEE-eeCCCCCCCeEEEEEeeeeccccccccccCCCC--------------------CCCCCcc
Q 016978 10 CKAAVAWEPNKP--LVIED-VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------------------EGLFPCI 66 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~--------------------~~~~p~~ 66 (379)
||++++.+++.+ +.+.+ ++.|.+.+++|+|||.++++|++|+..+.|..+ ..++|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888877754 55654 577788999999999999999999988877543 2356889
Q ss_pred cccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCc
Q 016978 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT 146 (379)
Q Consensus 67 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 146 (379)
+|||++|+|+++|++++.+++||+|++.+...|+.|..|.. |.. +|.. .+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~~------~~~~-~~------------------ 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----IDY------IGSE-RD------------------ 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----ccc------cCCC-CC------------------
Confidence 99999999999999999999999999988888887765421 110 1111 12
Q ss_pred ceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE
Q 016978 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (379)
Q Consensus 147 g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v 225 (379)
|+|++|+.++.+.++++|+++++.+++.+++++.+||+++ ...++++|++|||+|+ |++|++++++|+.+|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 4999999999999999999999999999999999999986 7788999999999998 9999999999999999 68888
Q ss_pred cCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCccc
Q 016978 226 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304 (379)
Q Consensus 226 ~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~ 304 (379)
..++ +++.++++|++.+++... ..+.+ ...+.+ ++|++||++|+ ..+..++++++++ |+++.+|.... ...
T Consensus 209 ~~~~-~~~~~~~~g~~~~~~~~~--~~~~~--~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~ 280 (350)
T cd08274 209 AGAA-KEEAVRALGADTVILRDA--PLLAD--AKALGGEPVDVVADVVGG-PLFPDLLRLLRPG-GRYVTAGAIAG-PVV 280 (350)
T ss_pred eCch-hhHHHHhcCCeEEEeCCC--ccHHH--HHhhCCCCCcEEEecCCH-HHHHHHHHHhccC-CEEEEecccCC-ccc
Confidence 6655 888889999976665443 33333 445555 89999999998 5689999999996 99999986422 223
Q ss_pred ccCcce-eeeccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 305 STRPFQ-LVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 305 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.++... +.++.++.++... ....+.++++++.++++.+ ++.+.|+++++++|++.+.+++.. |+|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 281 ELDLRTLYLKDLTLFGSTLG---TREVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred cCCHHHhhhcceEEEEeecC---CHHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 334333 2347777766543 2357888999999998874 367889999999999999887766 998863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=297.27 Aligned_cols=291 Identities=20% Similarity=0.250 Sum_probs=233.8
Q ss_pred eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCC
Q 016978 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRE 101 (379)
Q Consensus 22 ~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~ 101 (379)
+++.+.|.|+|++|||||||.|+++|+.|+. |.++....|.++|.|++|+|+++|+ .+++||||+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 8899999999999999999999999997654 3332233478999999999999874 69999999732
Q ss_pred CccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec----CCCCCcccc-cccc
Q 016978 102 CKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI----DPQAPLDKV-CLLG 176 (379)
Q Consensus 102 ~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i----P~~~~~~~a-a~l~ 176 (379)
++|++|+.++.+.+.++ |+++++++| ++++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 16899999999988888 899999987 6788
Q ss_pred ccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHH
Q 016978 177 CGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 255 (379)
Q Consensus 177 ~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~ 255 (379)
+++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.+++++.+.++++|+++++++++. ..+.+
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~-~~~~~ 198 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTV-KSLEE 198 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEecccc-ccHHH
Confidence 899999999888899999999999986 9999999999999999 89999899999999999999999988651 24556
Q ss_pred HHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC---ccccc--Ccce-eeeccEEEeeecCCCc---
Q 016978 256 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG---QEIST--RPFQ-LVTGRVWKGTAFGGFK--- 326 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~---~~~~~--~~~~-~~~~~~i~~~~~~~~~--- 326 (379)
.++..+++++|++||++|+. .+..++++++++ |+++.+|..... ...+. .+.. ++.++++.++....+.
T Consensus 199 ~~~~~~~~gvdvv~d~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (325)
T TIGR02825 199 TLKKASPDGYDCYFDNVGGE-FSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEV 276 (325)
T ss_pred HHHHhCCCCeEEEEECCCHH-HHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhh
Confidence 66666555899999999984 579999999996 999999864321 11111 1111 2235666665543221
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
....++++++++.++++++. +...|+++++++|++.+.+++.. |+|++
T Consensus 277 ~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 277 RQKALKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred hHHHHHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 12467889999999999865 45678999999999999988876 99874
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=294.19 Aligned_cols=314 Identities=23% Similarity=0.264 Sum_probs=255.0
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
+||++++.+++.+ +.+++++.|.+.+++|+||+.++++|++|+....|.++...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 5899999998875 88999999999999999999999999999998888776555788999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|+.... . .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~------------------~g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS------------------------------A------------------LGAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC------------------------------C------------------CcceeeEEEcCHHHceeCCCC
Confidence 9999974211 1 138999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++++.+++.+.+||.++.+.+++++|++|+|+|+ |.+|++++|+|+.+|+ +++++++++++++.++++|++++++
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~ 191 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVIN 191 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEc
Confidence 9999999888889999998877788999999999976 9999999999999999 7899989999999999999999988
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-------ccEE
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-------GRVW 317 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-------~~~i 317 (379)
.+. .++.+.+++.+++ ++|++|||+|+ ..+...+++++++ |+++.+|..... ...+....+.. ...+
T Consensus 192 ~~~--~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (327)
T PRK10754 192 YRE--ENIVERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR-GLMVSFGNASGP-VTGVNLGILNQKGSLYVTRPSL 266 (327)
T ss_pred CCC--CcHHHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC-CEEEEEccCCCC-CCCcCHHHHhccCceEEeccee
Confidence 765 6788888888887 99999999998 5688899999996 999999875421 11111111101 1111
Q ss_pred EeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.+...........+..+++++.++.+.+..++.+.|+++++++|++.+.+++.. |+||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (327)
T PRK10754 267 QGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI 326 (327)
T ss_pred ecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 111100000011245678899999988655557889999999999999988876 99986
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=294.07 Aligned_cols=312 Identities=23% Similarity=0.315 Sum_probs=254.6
Q ss_pred ceeeeeecCCCC---eEEEEeeCCCCCC-CeEEEEEeeeeccccccccccCCCCCC-C----CCcccccceeEEEEEeCC
Q 016978 10 CKAAVAWEPNKP---LVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSGKDPEG-L----FPCILGHEAAGIVESVGE 80 (379)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~~VlV~v~~~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~~G~V~~vG~ 80 (379)
|||+++.+++.| +.+++.|.|+|.+ ++|+||+.++++|+.|+..+.|..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 799999999876 8999999998887 999999999999999999888865432 2 577899999999999999
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
++..+++||+|++... . .|+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~------------------------------~------------------~g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP------------------------------G------------------LGTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC------------------------------C------------------CccchheEeccHHHe
Confidence 9999999999985421 1 139999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHH
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRA 235 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~----~~~~~~ 235 (379)
+++|+++++++++.+++.+.+||+++.....+++|++|||+|+ |++|++++|+|+++|+ +++++.+++ ++++.+
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~ 191 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL 191 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence 9999999999999999999999999877788999999999987 9999999999999999 677776655 678888
Q ss_pred HhcCCceEeCCCCCCc---hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-e
Q 016978 236 KNFGVTEFVNPKDHDK---PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-L 311 (379)
Q Consensus 236 ~~lg~~~v~~~~~~~~---~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~ 311 (379)
+++|++++++++. . ++...++...++++|++|||+|+. .+...+++++++ |+++.+|..... ...+++.. +
T Consensus 192 ~~~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~ 266 (341)
T cd08290 192 KALGADHVLTEEE--LRSLLATELLKSAPGGRPKLALNCVGGK-SATELARLLSPG-GTMVTYGGMSGQ-PVTVPTSLLI 266 (341)
T ss_pred HhcCCCEEEeCcc--cccccHHHHHHHHcCCCceEEEECcCcH-hHHHHHHHhCCC-CEEEEEeccCCC-CcccCHHHHh
Confidence 9999999988765 3 677777776655899999999985 477789999996 999999864322 22333322 3
Q ss_pred eeccEEEeeecCCCc-------ccccHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCee-EEEEec
Q 016978 312 VTGRVWKGTAFGGFK-------SRSQVPWLVDKYMKKEIKVDEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 312 ~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.++.++.+....... ....+.++++++.++.+.+. ....+ +++++++|++.+.+++.. |+|++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 267 FKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred hCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 347777776643321 01247778899999988754 34556 999999999999888776 999875
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=286.75 Aligned_cols=300 Identities=28% Similarity=0.471 Sum_probs=250.3
Q ss_pred ceeeeeecCCC-CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNK-PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~-~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||++++++.+. .+++++++.|++.+++|+||+.++++|++|+....|.......|.++|+|++|+|+.+|++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 57888887553 49999999999999999999999999999998888865434457899999999999999999999999
Q ss_pred CEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 89 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
|+|++.+. ..|+.|++|..+..+.|.... ++|.. .+ |+|++|+.++.+.++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~------------------g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRK---GIGTQ-AD------------------GGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCc---eeeec-CC------------------CceEEEEEcchHHeEECcCCC
Confidence 99998874 789999999999999998642 23321 22 499999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHHhcCCceEeC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI--DIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v--~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++++ ++....+||+++...+++++|++|||.|+|.+|++++|+|+.+|+ +|+++ .+++++.++++++|++++ +
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~ 215 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-N 215 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-C
Confidence 999887 666888999998888899999999998889999999999999999 67776 335568889999999888 7
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
+.. .++...+.+...+ ++|++||+.|+...+...+++++++ |+++.+|... .....++...++ +++++.|++++
T Consensus 216 ~~~--~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~ 291 (306)
T cd08258 216 GGE--EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFG-PLAASIDVERIIQKELSVIGSRSS 291 (306)
T ss_pred CCc--CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCCcccCHHHHhhcCcEEEEEecC
Confidence 765 6788888887766 8999999998777899999999996 9999999864 223344433343 48899998876
Q ss_pred CCcccccHHHHHHHHHcC
Q 016978 324 GFKSRSQVPWLVDKYMKK 341 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ 341 (379)
+ +++++++++++++|
T Consensus 292 ~---~~~~~~~~~~~~~~ 306 (306)
T cd08258 292 T---PASWETALRLLASG 306 (306)
T ss_pred c---hHhHHHHHHHHhcC
Confidence 4 36799999988764
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=290.32 Aligned_cols=308 Identities=19% Similarity=0.254 Sum_probs=245.2
Q ss_pred eeeeeecC---CCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCc
Q 016978 11 KAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 11 ~a~~~~~~---~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
||+++.++ +.+ +++.++|.|+|.++||+|||.++++|+.|..++.+..+...+|.++|+|++|+|+++|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 57888886 554 8888999999999999999999999999998888765545678899999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|+.... .. .+ |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~---------------------------~~-~~------------------g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD---------------------------ID-RP------------------GSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC---------------------------CC-CC------------------CcccceEEEcHHHcccCCC
Confidence 99999974310 00 12 3999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCC-----CCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhc
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~l 238 (379)
++++++++.+++++.|||+++....++++ |++|||+|+ |++|++++|+|+.+ |+ +|+++.+++++.+.++++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~ 193 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL 193 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence 99999999999999999999878888877 999999987 99999999999998 99 899998999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVW 317 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i 317 (379)
|++++++++. ++.+.+++...+++|+++|++++...+...+++++++ |+++.++... .++ ...+.. +.++
T Consensus 194 g~~~~~~~~~---~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~---~~~--~~~~~~~~~~~ 264 (336)
T TIGR02817 194 GAHHVIDHSK---PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDPA---ELD--ISPFKRKSISL 264 (336)
T ss_pred CCCEEEECCC---CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEcccc---ccc--chhhhhcceEE
Confidence 9999987643 5666777754448999999987767899999999996 9999885421 122 222221 2333
Q ss_pred EeeecC--C-C--c----ccccHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCee-EEEEe
Q 016978 318 KGTAFG--G-F--K----SRSQVPWLVDKYMKKEIKVDEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 318 ~~~~~~--~-~--~----~~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.+..+. . . . ....++++++++.++.+++. +.+.+ +++++++|++.+.+++.. |+|++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 265 HWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred EEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 332211 0 0 0 01346789999999988743 33445 468999999999988876 88875
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=283.31 Aligned_cols=312 Identities=23% Similarity=0.265 Sum_probs=254.5
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC---CCCCcccccceeEEEEEeCCCCCC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
|||+++++++.+ +.+.+.+.|.+.+++|+|++.++++|+.|+....|..+. ...|.++|||++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999887654 667777777789999999999999999999888775432 345788999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||+|++... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~-----------------------------~~~------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG-----------------------------RAG------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC-----------------------------CCC------------------ceeeEEEEEchHHeEeCC
Confidence 999999986421 012 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+++++.+++.+++.+.+|| ++...++++++++|||+|+ |++|++++++|+.+|+ +|+++++++++.+.++++|++.+
T Consensus 114 ~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA 191 (324)
T ss_pred CCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence 9999999999999999995 4677888999999999986 9999999999999999 89999899999999999999888
Q ss_pred eCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeee
Q 016978 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTA 321 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~ 321 (379)
+++.+ .++.+.+.+.+++ ++|+++|++|+.. ...++++++++ |+++.+|...... ..++... +.++.++.+..
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 266 (324)
T cd08244 192 VDYTR--PDWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPG-GRFLTYGWASGEW-TALDEDDARRRGVTVVGLL 266 (324)
T ss_pred EecCC--ccHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccC-cEEEEEecCCCCC-CccCHHHHhhCCcEEEEee
Confidence 88765 6677788887776 8999999999854 68999999996 9999998754322 2333222 23366666655
Q ss_pred cCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 322 FGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 322 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..... ..+.+.+.++++.++++.. .+...|+++++++|++.+.+++.. |+|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 267 GVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 43221 1235677888898998764 367889999999999999988876 999864
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=285.64 Aligned_cols=315 Identities=24% Similarity=0.303 Sum_probs=249.4
Q ss_pred ceeeeeecCC-CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~-~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++ +.+++++++.|+++++||+||+.++++|++|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 7899999995 238899999999999999999999999999998876654 22357789999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.....|+ + .+ .+ |+|++|+.++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~------------~--------~~---~~------------------g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP------------N--------DP---RN------------------GAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC------------C--------CC---CC------------------CcccceEEechhheEECCCCCC
Confidence 999876543221 0 00 22 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCC----------CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKV----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+++++.+++.+.+||+++.+..++ .++++|||+|+ |++|++++++|+.+|+ +|+++. ++++++.+++
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~ 196 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS 196 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence 999999999999999987666544 78999999998 9999999999999999 788776 5688999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhcc--CCceEEEEccCCCCcccccCcceeeecc
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK--GWGTSVIVGVAASGQEISTRPFQLVTGR 315 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~--~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 315 (379)
+|+++++++.+ .++.+.+++.+.+++|++||++|++..+..+++++++ + |+++.+|...... .. +.. ....
T Consensus 197 ~g~~~v~~~~~--~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~~-~~~-~~~~ 269 (339)
T cd08249 197 LGADAVFDYHD--PDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--EP-RKG-VKVK 269 (339)
T ss_pred cCCCEEEECCC--chHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--cC-CCC-ceEE
Confidence 99999998866 6777888877766899999999986779999999999 8 9999998754321 11 111 1111
Q ss_pred EEEeeecC------CCcccccHHHHHHHHHcCCCCCCCceeeeee--cchHHHHHHHHhcCC-ee-EEEEec
Q 016978 316 VWKGTAFG------GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMT--LGEINEAFRYMHGGD-CL-RCVLKM 377 (379)
Q Consensus 316 ~i~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~--~~~i~~A~~~~~~~~-~~-Kvvi~~ 377 (379)
.+...... .......+..+++++.++++.+.+ ...++ ++|+++|++.+.+++ .. |+|+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 270 FVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHP--VRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred EEEeeeecccccccccchHHHHHHHHHHHHcCCccCCC--ceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 11111111 011123466788899999888653 35567 999999999999888 65 999874
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=285.66 Aligned_cols=311 Identities=23% Similarity=0.289 Sum_probs=252.4
Q ss_pred cceeeeeecCCC----CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 016978 9 TCKAAVAWEPNK----PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 9 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
+|||+++.+++. ++.+++.+.|.+.+++|+||+.++++|+.|+....|..+. ..+|.++|+|++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 589999999877 3899999999999999999999999999999988876543 35788999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
.+++||+|++.. . |+|++|+.++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------~------------------g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------F------------------GAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------C------------------cceeEEEEechHHeEEC
Confidence 999999997531 1 38999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
|++ +.+++.+++++.+||+++.+..++++|++|||+|+ |.+|++++|+|+..|+ +|+++.+++++.+.++++|++.
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 187 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDR 187 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCce
Confidence 997 35677788899999999877788999999999987 9999999999999999 7899889999999999999988
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCc---------ccccCcceeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ---------EISTRPFQLVT 313 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~---------~~~~~~~~~~~ 313 (379)
+++.++ .++.+.+.....+++|++||++|+ ..+..++++++++ |+++.+|...... ...+....+.+
T Consensus 188 v~~~~~--~~~~~~~~~~~~~~vd~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (329)
T cd08250 188 PINYKT--EDLGEVLKKEYPKGVDVVYESVGG-EMFDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPPKLLAK 263 (329)
T ss_pred EEeCCC--ccHHHHHHHhcCCCCeEEEECCcH-HHHHHHHHHhccC-CeEEEEecccCCcccCcccccccccccHHHhhc
Confidence 887665 556666666554589999999997 6789999999996 9999998753210 01122222333
Q ss_pred ccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 314 GRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 314 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
+.++.++...... ....+.++++++.++.+.+.....+.|+++++++|++.+.+++.. |+|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 264 SASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred CceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 6666666543221 124567788899999887643345668999999999999988776 98874
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=283.57 Aligned_cols=313 Identities=22% Similarity=0.280 Sum_probs=254.7
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCc
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
||||+++.+++.+ +.+.+.+.|.+.+++|+||+.++++|+.|+....|..+. ...|.++|+|++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 6999999998864 777788888889999999999999999999888776532 2456789999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|+... .+ |+|++|+.++.+.++++|+
T Consensus 81 ~~Gd~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALL-------------------------------PG------------------GGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEec-------------------------------CC------------------CceeeEEEecHHHcEeCCC
Confidence 9999997431 11 3999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
++++.+++.+++++.+||+++....++++|++|||+|+ |++|++++++|+.+|+ +++.+.+++++.+.++++|+++++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILI 190 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence 99999999999999999999877788999999999987 9999999999999999 667788999999999999998888
Q ss_pred CCCCCCch-HHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccc-cCcceeee-ccEEEee
Q 016978 245 NPKDHDKP-IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS-TRPFQLVT-GRVWKGT 320 (379)
Q Consensus 245 ~~~~~~~~-~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~-~~~~~~~~-~~~i~~~ 320 (379)
++.. .+ +.+.+++.+++ ++|++||+.++ ..+..++++++++ |+++.+|.... .... ++...++. ..++.++
T Consensus 191 ~~~~--~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 265 (334)
T PTZ00354 191 RYPD--EEGFAPKVKKLTGEKGVNLVLDCVGG-SYLSETAEVLAVD-GKWIVYGFMGG-AKVEKFNLLPLLRKRASIIFS 265 (334)
T ss_pred ecCC--hhHHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhccC-CeEEEEecCCC-CcccccCHHHHHhhCCEEEee
Confidence 8765 33 77778888766 99999999987 6789999999996 99999986432 2211 33333233 4466665
Q ss_pred ecCCCcc--c-----ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 321 AFGGFKS--R-----SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 321 ~~~~~~~--~-----~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
....... . ..++++++++.++.+.+ .+.+.+++++++++++.+.+++.. |+|+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~ 329 (334)
T PTZ00354 266 TLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN 329 (334)
T ss_pred eccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence 5433111 0 12466778888888774 367889999999999999987765 9999875
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=280.48 Aligned_cols=313 Identities=22% Similarity=0.274 Sum_probs=243.0
Q ss_pred ceeeeeecCCC--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.++++ ++++++.|.|.+.+++|+||+.++++|++|+..+.|..+.. .+|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 79999999986 59999999999999999999999999999999988875432 45788999999999999 456899
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+. .+|.. .+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~-~~------------------g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMN-TD------------------GGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCC-CC------------------ceeEEEEEEchhhEEECCCC
Confidence 9999986421 01111 22 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhcc--CCC-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTA--KVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~--~~~-~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+++++++.+++.+.+||.++.... ++. .+++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|+++
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE 194 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence 999999999999999998875443 335 3579999998 9999999999999999 7999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~ 321 (379)
+++..+ . .....+....+++|++||+.|+ ..+..++++++++ |+++.+|..... ...+.+..+ .++.++.+..
T Consensus 195 ~~~~~~--~-~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 268 (325)
T cd05280 195 VLDRED--L-LDESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYG-GVVASCGNAAGP-ELTTTVLPFILRGVSLLGID 268 (325)
T ss_pred EEcchh--H-HHHHHHHhcCCCccEEEECCch-HHHHHHHHhhcCC-CEEEEEecCCCC-ccccccchheeeeeEEEEEE
Confidence 887654 2 1122222333389999999998 5699999999996 999999975432 223444444 3477777765
Q ss_pred cCCCcc---cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 322 FGGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 322 ~~~~~~---~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...... ...++.+.+++..+... .+..+|+++|+++|++.+.+++.. |+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 269 SVNCPMELRKQVWQKLATEWKPDLLE---IVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred eecCchhHHHHHHHHHHHHHhcCCcc---ceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 443211 11233344444455222 367899999999999999988876 999864
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=283.27 Aligned_cols=301 Identities=28% Similarity=0.411 Sum_probs=230.5
Q ss_pred eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCC----CCcccccceeEEEE---EeC-CCCCCcCCCCEEee
Q 016978 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL----FPCILGHEAAGIVE---SVG-EGVTEVQPGDHVIP 93 (379)
Q Consensus 22 ~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~----~p~~~G~e~~G~V~---~vG-~~v~~~~~Gd~V~~ 93 (379)
....+.++|.|.+++++|++.++++|+.|+.++.|.+.... +|.++++++.|++. ..| ..+..+..||.++.
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 45578899999999999999999999999999999876553 67555555555533 334 22334555555532
Q ss_pred cCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccc
Q 016978 94 CYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC 173 (379)
Q Consensus 94 ~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa 173 (379)
. ...|+|+||+.+|...++++|+++++.+||
T Consensus 100 ~-------------------------------------------------~~~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 F-------------------------------------------------LSSGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred c-------------------------------------------------cCCCceeeEEEcchhhccCCCCccChhhhh
Confidence 1 123499999999999999999999999999
Q ss_pred cccccchhhhhhhhhcc------CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 174 LLGCGVPTGLGAVWNTA------KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~------~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++.++.|||.+++... ++++|++|||+|+ |++|++++|+|++.|+ ..+++.+++++.++++++|+++++||
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence 99999999999999999 9999999999977 9999999999999996 45555599999999999999999999
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC---CCcccccCcceeeeccE-----EE
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA---SGQEISTRPFQLVTGRV-----WK 318 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~---~~~~~~~~~~~~~~~~~-----i~ 318 (379)
++ .++.+.+++.+.++||+||||+|+. .......++... |+...++... .+.... ..+..+..+. +.
T Consensus 210 ~~--~~~~e~~kk~~~~~~DvVlD~vg~~-~~~~~~~~l~~~-g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 284 (347)
T KOG1198|consen 210 KD--ENVVELIKKYTGKGVDVVLDCVGGS-TLTKSLSCLLKG-GGGAYIGLVGDELANYKLD-DLWQSANGIKLYSLGLK 284 (347)
T ss_pred CC--HHHHHHHHhhcCCCccEEEECCCCC-ccccchhhhccC-CceEEEEeccccccccccc-cchhhhhhhhheeeeee
Confidence 98 8999999999844999999999995 477777778885 7655554432 111111 0000001101 11
Q ss_pred e---eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 319 G---TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 319 ~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
+ .+.......+.++.+.+++++++++ +.+++.||++++.+|++.+.+++.. |+++++++
T Consensus 285 ~~~~~~~~~~~~~~~l~~l~~~ie~gkik--p~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~~ 347 (347)
T KOG1198|consen 285 GVNYRWLYFVPSAEYLKALVELIEKGKIK--PVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKDV 347 (347)
T ss_pred ccceeeeeecCCHHHHHHHHHHHHcCccc--CCcceeeeHHHHHHHHHHHhhcCCcceEEEEecC
Confidence 1 1111123456788899999999777 5589999999999999999987765 99998763
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=280.14 Aligned_cols=330 Identities=25% Similarity=0.380 Sum_probs=265.8
Q ss_pred ceeeeeecCCC--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++...+. .+.+.+.+.|.+++++|+|++.++++|++|+....|..+.. ..|.++|||++|+|+.+|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 78999987653 38888888888899999999999999999999888765432 4678899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.....|+.+.+| .|.... ++|.. .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~~-~~------------------g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGGP-ID------------------GVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccccccc------cccccc---ccccc-cC------------------ceeeeEEEecHHHeEECCCC
Confidence 9999998776666544333 332211 12211 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++.+++.+++.+.+||+++...+++++|++|+|+|+|++|++++++|+.+|+ +|++++.++++++.++++|++.+++.
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 211 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINY 211 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcC
Confidence 99999999999999999998777889999999999889999999999999999 79999899999999999999998876
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 324 (379)
+. ..++.+.+++.+++ ++|+++|+.+. ..+..++++++++ |+++.+|....... ...... +.++.++.+.....
T Consensus 212 ~~-~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (336)
T cd08276 212 RT-TPDWGEEVLKLTGGRGVDHVVEVGGP-GTLAQSIKAVAPG-GVISLIGFLSGFEA-PVLLLPLLTKGATLRGIAVGS 287 (336)
T ss_pred Cc-ccCHHHHHHHHcCCCCCcEEEECCCh-HHHHHHHHhhcCC-CEEEEEccCCCCcc-CcCHHHHhhcceEEEEEecCc
Confidence 53 14577778888876 99999999986 6689999999996 99999987543211 222222 23477777766543
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...++++++++.++.+.+. ....|++++++++++.+.+++.. |+++++
T Consensus 288 ---~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 288 ---RAQFEAMNRAIEAHRIRPV--IDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred ---HHHHHHHHHHHHcCCcccc--cCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 3578888899988877643 46889999999999999988776 988863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=277.63 Aligned_cols=298 Identities=19% Similarity=0.286 Sum_probs=248.4
Q ss_pred eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCC
Q 016978 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100 (379)
Q Consensus 22 ~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~ 100 (379)
+.+++.|.|++.+++|+||+.++++|+.|...+.+.... ...|.++|||++|+|+.+|++++.+++||+|++.+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 667788888899999999999999999999888776543 246789999999999999999999999999985421
Q ss_pred CCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccch
Q 016978 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180 (379)
Q Consensus 101 ~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 180 (379)
+ |+|++|+.++.+.++++|+++++.+++.+++...
T Consensus 90 ---------------------------~------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 ---------------------------E------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred ---------------------------C------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 2 3899999999999999999999999999988999
Q ss_pred hhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHH
Q 016978 181 TGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 181 ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~ 259 (379)
+||+++.....+.+|++|||+|+ |++|++++++|+.+|+ +++++.+++++++.++++|+++++++++ .++...+.+
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~ 201 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP--EDLAQRVKE 201 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc--hhHHHHHHH
Confidence 99999878788899999999988 9999999999999999 7888888899999999999999998876 567888888
Q ss_pred hcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCcc-------ccc
Q 016978 260 LTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKS-------RSQ 330 (379)
Q Consensus 260 ~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-------~~~ 330 (379)
.+++ ++|++|||.|+.. ....+++++++ |+++.+|..... ...++...+. ++.++.+.....+.. ...
T Consensus 202 ~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (323)
T cd05282 202 ATGGAGARLALDAVGGES-ATRLARSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQET 278 (323)
T ss_pred HhcCCCceEEEECCCCHH-HHHHHHhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHH
Confidence 8877 9999999999954 67889999996 999999875433 3344444444 467777665543311 134
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 331 VPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 331 ~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
+.++++++.++.+.+. +.+.|+++++++|++.+.+++.. |+|++
T Consensus 279 ~~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 279 FAEVIKLVEAGVLTTP--VGAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHHHhCCCcccC--ccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 6778888889988753 57889999999999999988766 88864
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=275.45 Aligned_cols=311 Identities=25% Similarity=0.397 Sum_probs=248.7
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||++++.+.+.+ +.+.+.+.|.+.+++|+||+.++++|+.|+....+..+....|.++|||++|+|+++|+ ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 688888877653 67778888888999999999999999999998888765556688999999999999995 57999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.... +|.. .+ |+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGRT-FD------------------GSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCCC-CC------------------cccceEEEcCHHHcEeCCCCC
Confidence 9999865320 1100 22 399999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++++++.+++++.+||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++.+++++.+.++++|++++++.
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 194 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID 194 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec
Confidence 999999999999999999888888999999999988 9999999999999999 79999899999999999999888754
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCccc----ccCcceeeeccEEEeeec
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI----STRPFQLVTGRVWKGTAF 322 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~----~~~~~~~~~~~~i~~~~~ 322 (379)
. .++.+.+++. .+++|+++|++|+ ..+..++++++++ |+++.+|........ ......+.+++++.+...
T Consensus 195 -~--~~~~~~i~~~-~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (320)
T cd08243 195 -D--GAIAEQLRAA-PGGFDKVLELVGT-ATLKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSS 268 (320)
T ss_pred -C--ccHHHHHHHh-CCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecch
Confidence 3 4666777777 4499999999998 6699999999996 999999874322111 111111123555555443
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
... ....+..+++++.++.+.+. ....|+++|+++|++.+.+++.. |+|+
T Consensus 269 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 269 GDV-PQTPLQELFDFVAAGHLDIP--PSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred hhh-hHHHHHHHHHHHHCCceecc--cccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 221 12357788899999988753 56889999999999999888766 8775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=273.55 Aligned_cols=297 Identities=21% Similarity=0.237 Sum_probs=240.9
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||++++.+.+ | +++.+.|.|.+.+++|+||+.++++|+.|+....+. ..|.++|||++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~ 75 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV 75 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence 6888888755 4 667788999999999999999999999998876521 23568999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|+... .+ |+|++|+.++.+.++++|+++
T Consensus 76 Gd~V~~~~-------------------------------~~------------------g~~~~~~~v~~~~~~~ip~~~ 106 (305)
T cd08270 76 GARVVGLG-------------------------------AM------------------GAWAELVAVPTGWLAVLPDGV 106 (305)
T ss_pred CCEEEEec-------------------------------CC------------------cceeeEEEEchHHeEECCCCC
Confidence 99997431 12 399999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++.+++++++.+.+||+++...... +|++|+|+|+ |++|++++++|+.+|+ +|+.+.+++++.+.++++|++.++..
T Consensus 107 ~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~ 184 (305)
T cd08270 107 SFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVG 184 (305)
T ss_pred CHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence 9999999999999999987555544 6999999988 9999999999999999 89999899999999999998765543
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee---ccEEEeeecC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT---GRVWKGTAFG 323 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~---~~~i~~~~~~ 323 (379)
.+ +..++++|+++|++|+. .+..++++++.+ |+++.+|... .....+++..+.. +.++.++.+.
T Consensus 185 ~~----------~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (305)
T cd08270 185 GS----------ELSGAPVDLVVDSVGGP-QLARALELLAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFLY 251 (305)
T ss_pred cc----------cccCCCceEEEECCCcH-HHHHHHHHhcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEcc
Confidence 22 12234799999999984 689999999996 9999998754 2223333333333 6677766654
Q ss_pred C-CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 G-FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~-~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
. ......+..+++++.++++.+. +.+.++++++++|++.+.+++.. |+|+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 252 DGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred CHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 3 1123467888999999999854 67889999999999999988876 999865
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=272.51 Aligned_cols=302 Identities=24% Similarity=0.306 Sum_probs=241.9
Q ss_pred ecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccc-cCCCCC--CCCCcccccceeEEEEEeCCCCCCcCCCCEEe
Q 016978 16 WEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTW-SGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 92 (379)
Q Consensus 16 ~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~ 92 (379)
+++++ +++.+++.|++.+++|+||+.++++|+.|+..+ .|..+. ...|.++|+|++|+|+.+|++++.+++||+|+
T Consensus 2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 34555 999999999999999999999999999999887 665322 12477899999999999999999999999998
Q ss_pred ecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCcccc
Q 016978 93 PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172 (379)
Q Consensus 93 ~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~a 172 (379)
+.. .|+|++|+.++.+.++++|+++ ..+
T Consensus 81 ~~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~ 108 (312)
T cd08269 81 GLS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQ 108 (312)
T ss_pred Eec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhh
Confidence 542 1389999999999999999998 233
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCch
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~ 252 (379)
+.+..+++++++++. .+++++|++|||+|+|.+|++++|+|+.+|+++|+++.+++++.++++++|++++++.+. .+
T Consensus 109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~ 185 (312)
T cd08269 109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS--EA 185 (312)
T ss_pred HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC--cC
Confidence 322257788888764 788999999999988999999999999999944999988999999999999998888655 67
Q ss_pred HHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecCCC-cccc
Q 016978 253 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGF-KSRS 329 (379)
Q Consensus 253 ~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~ 329 (379)
+.+.+.+.+++ ++|+++||+|....+..++++++++ |+++.+|... .....+++.. .+.+..+.+...... ....
T Consensus 186 ~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (312)
T cd08269 186 IVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGLE 263 (312)
T ss_pred HHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchhh
Confidence 88888888877 9999999998877899999999996 9999998653 2222333222 122555544432221 1235
Q ss_pred cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe--eEEEE
Q 016978 330 QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC--LRCVL 375 (379)
Q Consensus 330 ~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~--~Kvvi 375 (379)
.++++++++.++.+.+.+.+.+.|+++++++|++.+.+++. .|+++
T Consensus 264 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 264 GMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 78889999999998865556788999999999999998865 49887
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=271.39 Aligned_cols=311 Identities=23% Similarity=0.272 Sum_probs=240.9
Q ss_pred eeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||+++.+.+.| ++++++|.|.+.+++|+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+. +++..+++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 67888887775 789999999999999999999999999999988886533 25688899999999998 55678999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.+.. .|.. .+ |+|++|+.+|.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVS-HD------------------GGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCC-CC------------------ccceEEEEEchhheEECCCCC
Confidence 9999865310 1110 22 399999999999999999999
Q ss_pred Cccccccccccchhhhhhhh--hccCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 168 PLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
++++++.+++.+.+|+.++. ..+.+.+|+ +|||+|+ |++|++++++|+.+|+ +++++.+++++++.++++|++++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~ 194 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEV 194 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEE
Confidence 99999999988889887753 334488898 9999998 9999999999999999 78877788888899999999888
Q ss_pred eCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeec
Q 016978 244 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAF 322 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~ 322 (379)
++..+ .+. .++....+++|+++||+|+. .+..++++++++ |+++.+|.... ...+.+...+ ..+.++.+...
T Consensus 195 ~~~~~--~~~--~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 267 (323)
T TIGR02823 195 IDRED--LSP--PGKPLEKERWAGAVDTVGGH-TLANVLAQLKYG-GAVAACGLAGG-PDLPTTVLPFILRGVSLLGIDS 267 (323)
T ss_pred Ecccc--HHH--HHHHhcCCCceEEEECccHH-HHHHHHHHhCCC-CEEEEEcccCC-CCccccHHHHhhcceEEEEEec
Confidence 87654 222 44455555799999999984 689999999996 99999997532 2233322333 34677776553
Q ss_pred CCCcc---cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 323 GGFKS---RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 323 ~~~~~---~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..... ...+..+.+++..+.+.. . .+.|+++++++|++.+.+++.. |+|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 268 VYCPMALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred cccCchhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence 32111 112445556666776653 2 4689999999999999988876 998863
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=272.12 Aligned_cols=314 Identities=19% Similarity=0.248 Sum_probs=238.4
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC-CCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.+++++ +.+++.|.|.+.+++|+||+.++++|++|.....+.. ....+|.++|||++|+|+++| ++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988874 8889999999999999999999999999987654321 122458899999999999964 46799
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+.. .|.. .+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~-~~------------------g~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVS-HH------------------GGYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCC-CC------------------CcceeEEEEcHHHeEECCCC
Confidence 99999865320 1111 23 39999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhc--cC-CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNT--AK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~--~~-~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+++++++.+++.+.|||.++... .. ...+++|||+|+ |.+|++++|+|+.+|+ +|+++.+++++++.++++|+++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 194 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE 194 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence 99999999999999998876432 23 334789999998 9999999999999999 8999989999999999999988
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~ 321 (379)
+++.++ . ..+.+.+.+.+++|++||++|+ ..+..++++++++ |+++.+|.... ...++.+..+ .++.++.+..
T Consensus 195 v~~~~~--~-~~~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (326)
T cd08289 195 VIPREE--L-QEESIKPLEKQRWAGAVDPVGG-KTLAYLLSTLQYG-GSVAVSGLTGG-GEVETTVFPFILRGVNLLGID 268 (326)
T ss_pred EEcchh--H-HHHHHHhhccCCcCEEEECCcH-HHHHHHHHHhhcC-CEEEEEeecCC-CCCCcchhhhhhccceEEEEE
Confidence 888765 2 3455556654489999999998 6689999999996 99999997532 2233333333 3477777764
Q ss_pred cCCCcccccHHHHHHHHHcCCCCC---CCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKV---DEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~---~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..... .....++++.+.. .+.+ ...+.++|+++++++|++.+.+++.. |+|+++
T Consensus 269 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 269 SVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred eEecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 32110 0122333333332 2221 12357899999999999999988876 999864
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=273.28 Aligned_cols=312 Identities=19% Similarity=0.200 Sum_probs=249.6
Q ss_pred ceeeeeecCCCC-----eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 016978 10 CKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 10 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
|||+++.+++.+ +...++|.|++.+++|+||+.++++|++|+..+.+..+..++|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 689999998874 555678888889999999999999999999888776654456778999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||+|+..... . .+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~~-------------------------~---~~------------------g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGDI-------------------------T---RP------------------GSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCCC-------------------------C---CC------------------ccceEEEEEchHHeeeCC
Confidence 9999999753110 0 22 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCC-----CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEP-----GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-g~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~ 237 (379)
+++++++++.+++.+.+||+++.+.+++.+ |++|+|+|+ |++|++++|+|+.+| + +|++++.++++.+.+++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~ 193 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE 193 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence 999999999999999999998878788887 999999986 999999999999999 7 89999899999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccE
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRV 316 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~ 316 (379)
+|++++++... ++.+.++....+++|++||++|....+..++++++++ |+++.+|... ..++...+ .++.+
T Consensus 194 ~g~~~~~~~~~---~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~----~~~~~~~~~~~~~~ 265 (336)
T cd08252 194 LGADHVINHHQ---DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ----EPLDLGPLKSKSAS 265 (336)
T ss_pred cCCcEEEeCCc---cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC----Ccccchhhhcccce
Confidence 99998887653 4555565443348999999999767899999999996 9999998642 22233333 24566
Q ss_pred EEeeecCCC---c------ccccHHHHHHHHHcCCCCCCCc-eeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 317 WKGTAFGGF---K------SRSQVPWLVDKYMKKEIKVDEY-VTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 317 i~~~~~~~~---~------~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
+.+..+... . ....+.++++++.++.+.+... ....++++++++|++.+.+++.. |++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 266 FHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred EEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 655443221 0 0123677889999998885311 12457999999999999988876 88874
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=275.90 Aligned_cols=311 Identities=23% Similarity=0.273 Sum_probs=240.5
Q ss_pred ceeeeeecCCCC---eEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCC---------------CCCCCcccccc
Q 016978 10 CKAAVAWEPNKP---LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP---------------EGLFPCILGHE 70 (379)
Q Consensus 10 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e 70 (379)
|||+++.++++| +.++|++.|+| .+++|+||+.++++|++|+....|... ....|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 789999888886 88999999999 499999999999999999998877421 23568899999
Q ss_pred eeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceee
Q 016978 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (379)
Q Consensus 71 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (379)
++|+|+.+|++++++++||+|++.+.. +..|+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence 999999999999999999999864321 1124999
Q ss_pred eeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCC----CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE
Q 016978 151 QYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP----GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (379)
Q Consensus 151 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v 225 (379)
+|+.++.+.++++|+++++.+++.+++.+.+||+++.+...+.+ |++|+|+|+ |++|++++++|+.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 99999999999999999999999999999999998877776654 999999986 9999999999999999 78877
Q ss_pred cCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc--
Q 016978 226 DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE-- 303 (379)
Q Consensus 226 ~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~-- 303 (379)
.++ ++.+.++++|++.+++..+ .++.+.+... +++|++||++|.. ....++++++++ |+++.+|.......
T Consensus 194 ~~~-~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~--~~vd~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~ 266 (350)
T cd08248 194 CST-DAIPLVKSLGADDVIDYNN--EDFEEELTER--GKFDVILDTVGGD-TEKWALKLLKKG-GTYVTLVSPLLKNTDK 266 (350)
T ss_pred eCc-chHHHHHHhCCceEEECCC--hhHHHHHHhc--CCCCEEEECCChH-HHHHHHHHhccC-CEEEEecCCccccccc
Confidence 654 6788889999988887765 4555544432 3899999999985 689999999996 99999986432111
Q ss_pred ccc--Ccc----eeee-ccE-E-Eee---ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee
Q 016978 304 IST--RPF----QLVT-GRV-W-KGT---AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL 371 (379)
Q Consensus 304 ~~~--~~~----~~~~-~~~-i-~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~ 371 (379)
... .++ .+.. ... + ... +.........+.++++++.++.+.+ .+.+.|+++++++|++.+.+++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~ 344 (350)
T cd08248 267 LGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKP--VIDKVFPFEEVPEAYEKVESGHAR 344 (350)
T ss_pred ccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEec--ccceeecHHHHHHHHHHHhcCCCc
Confidence 111 000 0000 000 0 000 0000112346888999999998764 367889999999999999887765
Q ss_pred -EEEEe
Q 016978 372 -RCVLK 376 (379)
Q Consensus 372 -Kvvi~ 376 (379)
|++++
T Consensus 345 ~~vv~~ 350 (350)
T cd08248 345 GKTVIK 350 (350)
T ss_pred eEEEeC
Confidence 88864
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=268.90 Aligned_cols=317 Identities=19% Similarity=0.228 Sum_probs=236.6
Q ss_pred eeeeeecCCCCeEEEEeeCCCC---CCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCC-Cc
Q 016978 11 KAAVAWEPNKPLVIEDVQVAPP---QAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVT-EV 85 (379)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~---~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~-~~ 85 (379)
|++++.+++.|+++++++.|.| ++++|+||+.++++|++|+..+.+..... ..|.++|+|++|+|+++|++++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6889999998888888887766 89999999999999999988765432222 2377899999999999999998 89
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc----ceE
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV----SVA 161 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~----~~~ 161 (379)
++||+|++.....|+ . .|+|++|+.++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~~--------------------------~------------------~g~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPYG--------------------------G------------------QGTLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCCC--------------------------C------------------CceeeEEEEEccccccceeE
Confidence 999999865321110 1 2499999999987 799
Q ss_pred ecCCCCCccccccccccchhhhhhhhhcc-CCCCCCEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhc
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~l 238 (379)
++|+++++.+++.+++++.+||+++.+.. ++++|++|||+|+ |++|++++|+|+.+|. ++++++. ++++++.++++
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~ 196 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKL 196 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHh
Confidence 99999999999999999999999876666 7999999999988 8999999999999854 3677774 45556688899
Q ss_pred CCceEeCCCCCCch---HHHH-HHHhcCC-CccEEEEcCCCHHHHHHHHHHhc---cCCceEEEEccCCCCc--ccc---
Q 016978 239 GVTEFVNPKDHDKP---IQQV-LVDLTDG-GVDYSFECIGNVSVMRAALECCH---KGWGTSVIVGVAASGQ--EIS--- 305 (379)
Q Consensus 239 g~~~v~~~~~~~~~---~~~~-i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~---~~~G~iv~~g~~~~~~--~~~--- 305 (379)
|++++++.++ .+ +... ++..+++ ++|++|||.|+...+..++++++ ++ |+++.++...... ...
T Consensus 197 g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~ 273 (352)
T cd08247 197 GADHFIDYDA--HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNS 273 (352)
T ss_pred CCCEEEecCC--CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhh
Confidence 9999988765 33 3333 4444424 89999999998777889999999 96 9999874221110 000
Q ss_pred -----cCcceeeeccEEEeeec---CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 306 -----TRPFQLVTGRVWKGTAF---GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 306 -----~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.....+....++....+ ........+.++++++.++.+.+ .+.+.|+++++++|++.+.+++.. |+|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 351 (352)
T cd08247 274 WDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKP--PIDSVYPFEDYKEAFERLKSNRAKGKVVIK 351 (352)
T ss_pred ccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEe--eeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence 00111111111111100 00011235777889999998764 367889999999999999988876 99886
Q ss_pred c
Q 016978 377 M 377 (379)
Q Consensus 377 ~ 377 (379)
+
T Consensus 352 ~ 352 (352)
T cd08247 352 V 352 (352)
T ss_pred C
Confidence 3
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi |
| >cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=262.17 Aligned_cols=312 Identities=18% Similarity=0.239 Sum_probs=242.5
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.++|.+ +.++++|.|+|.+++|+||+.++++|++|.....|..+. ..+|.++|||++|+|++ ++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 789999988853 889999999999999999999999999999888776432 23577899999999999 7778899
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.... .|. +..|+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~-------------------~~~g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VGE-------------------RHWGGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CCC-------------------CCCCcceeEEEEchHHeeeCCCC
Confidence 99999864210 000 01249999999999999999999
Q ss_pred CCccccccccccchhhhhhhh--hccCCC-CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVW--NTAKVE-PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~-~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+++++++.+++.+++++.++. +..+.. +|++|||+|+ |++|++++|+|+.+|+ +++++.+++++.+.++++|+++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 194 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE 194 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence 999999999988888876643 223445 6789999998 9999999999999999 7888889999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~ 321 (379)
++++++ ....++..+.+++|.++|++++ ..+..++..++.+ |+++.+|.... ....+++..+ .++.++.+..
T Consensus 195 ~~~~~~----~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~-g~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (324)
T cd08288 195 IIDRAE----LSEPGRPLQKERWAGAVDTVGG-HTLANVLAQTRYG-GAVAACGLAGG-ADLPTTVMPFILRGVTLLGID 267 (324)
T ss_pred EEEcch----hhHhhhhhccCcccEEEECCcH-HHHHHHHHHhcCC-CEEEEEEecCC-CCCCcchhhhhccccEEEEEE
Confidence 988754 2224555555578999999998 4577888888986 99999987532 2222333333 4477777764
Q ss_pred cCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 322 FGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 322 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..... ....+..+++++.++.+.+ +.+.++++|+++|++.+.+++.. |+|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 268 SVMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred eecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 33221 1123555666777787753 36889999999999999988876 998864
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=261.98 Aligned_cols=309 Identities=24% Similarity=0.320 Sum_probs=251.8
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++.+.+.+ +.+.+.+.|.+.+++|+||+.++++|+.|+....+..+. ..+|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 799999886654 777888888889999999999999999999888776533 24678999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|+... .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALL-------------------------------AG------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEec-------------------------------CC------------------CceeEEEEcCHHHhccCCCC
Confidence 999997531 11 38999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.++..+.++|+++.+...+.++++|+|+|+ |++|++++++++..|+ +++++++++++.+.++++|++.+++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAIN 190 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999877788999999999997 9999999999999999 7999989999999999999988887
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
... .++.+.+.+.+.+ ++|+++|+.|+.. +...+.+++++ |+++.+|..... ...+....+ .++.++.++...
T Consensus 191 ~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~-g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T cd05276 191 YRT--EDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPD-GRLVLIGLLGGA-KAELDLAPLLRKRLTLTGSTLR 265 (323)
T ss_pred CCc--hhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccC-CEEEEEecCCCC-CCCCchHHHHHhCCeEEEeecc
Confidence 765 5677777777766 8999999999844 88899999996 999999865322 123333333 347777776654
Q ss_pred CCcc-------cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 324 GFKS-------RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 324 ~~~~-------~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
.... ...+.++++++.++++.+ ...+.|+++++++|++.+.+++.. |+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 266 SRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred chhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 3211 112456777888888764 367889999999999999887765 7764
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=262.09 Aligned_cols=315 Identities=23% Similarity=0.336 Sum_probs=251.8
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++..++.+ +.+.++|.|.+.+++|+|++.++++|++|+....|..+. ...|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 688888877654 778899999999999999999999999999888776542 35788999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++..+.. ++ .. |++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~~-----------------------~~---~~------------------g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLGW-----------------------GR---RQ------------------GTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEecccc-----------------------CC---CC------------------cceeeEEEecHHHcEeCCCC
Confidence 999998764200 00 12 38999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.+++++.+||+++....++.+|++|+|+|+ |++|++++++++.+|+ +|+++++++++.+.++++|++++++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 195 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFN 195 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999998877789999999999987 9999999999999999 8999989999999999999988887
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-eeeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 323 (379)
... .++.+.+.+.+.+ ++|+++|+++.. .....+++++++ |+++.+|.... ...+++.. +..+.++.+....
T Consensus 196 ~~~--~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~-g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 269 (325)
T cd08253 196 YRA--EDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPG-GRIVVYGSGGL--RGTIPINPLMAKEASIRGVLLY 269 (325)
T ss_pred CCC--cCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCC-CEEEEEeecCC--cCCCChhHHHhcCceEEeeehh
Confidence 765 5677777777666 899999999984 478889999996 99999987532 22222222 2235555544322
Q ss_pred CCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
... ....+..+.+++.++.+.+. ....|++++++++++.+.+++.. |+++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 270 TATPEERAAAAEAIAAGLADGALRPV--IAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCccCc--cccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 211 11234455667777777643 56889999999999999987776 988763
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=259.71 Aligned_cols=308 Identities=27% Similarity=0.358 Sum_probs=248.9
Q ss_pred eeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
||+.+..++.+ +.+.+.+.|.+.+++|+|++.++++|+.|+....+..+. .+|.++|||++|+|+.+|++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46677666654 667777777788999999999999999999888776543 457789999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|++.. .. |+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~-------------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG-------------------------------PP------------------GAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec-------------------------------CC------------------CceeEEEEecHHHceeCCCCCC
Confidence 9997531 01 3899999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+.+++.+++...++++++.+..++.+|++|||+|+ |++|++++++|+.+|+ +|++++.++++.+.++++|++++++..
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR 189 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence 99999888899999998877888999999999996 9999999999999999 899998999999999999998888776
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 325 (379)
+ .++.+.+.+.+.+ ++|+++||.++ ..+..++++++++ |+++.+|..... ...+++..+ .++.++.+......
T Consensus 190 ~--~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 264 (320)
T cd05286 190 D--EDFVERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFHY 264 (320)
T ss_pred c--hhHHHHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhhh
Confidence 5 6777788888776 89999999998 5689999999996 999999875322 122222222 23555544332221
Q ss_pred c-c----cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 326 K-S----RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 326 ~-~----~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
. . ...+.++++++.++.+.+. ..+.|+++++++|++.+.+++.. |+|++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 319 (320)
T cd05286 265 IATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTGKLLLI 319 (320)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCceEEEe
Confidence 1 1 1234567888888887754 56789999999999999988776 88875
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=243.66 Aligned_cols=298 Identities=24% Similarity=0.299 Sum_probs=239.6
Q ss_pred eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeC--CCCCCcCCCCEEeecCCcCC
Q 016978 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG--EGVTEVQPGDHVIPCYQAEC 99 (379)
Q Consensus 22 ~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG--~~v~~~~~Gd~V~~~~~~~~ 99 (379)
+.++|+++|+|++|+||||..|.++.|....-++ ..+..--|+-+|...+|.++... |+.+.|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~-d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----- 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMS-DAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----- 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeeccc-CCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence 9999999999999999999999999984332222 22222346677776666555443 567889999999632
Q ss_pred CCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccc--cccc
Q 016978 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVC--LLGC 177 (379)
Q Consensus 100 ~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa--~l~~ 177 (379)
.+|++|..++.+.+.|++++.-+..+. .+..
T Consensus 101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 189999999999999998775444433 3667
Q ss_pred cchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHH
Q 016978 178 GVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQ 255 (379)
Q Consensus 178 ~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~ 255 (379)
+..|||.+|++.+++++|++|+|.|| |++|..+.|+||..|+ +|+++..+++|.+++++ +|.|.++||+. +++.+
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~ 210 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQ 210 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccHHH
Confidence 89999999999999999999999987 9999999999999999 99999999999999998 99999999998 79999
Q ss_pred HHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC--CcccccCcce---eee-ccEEEeeecCC-Cc--
Q 016978 256 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS--GQEISTRPFQ---LVT-GRVWKGTAFGG-FK-- 326 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~--~~~~~~~~~~---~~~-~~~i~~~~~~~-~~-- 326 (379)
.+.+..+.|+|+.||++|+ +.+...+..|+.. +|++.+|..+. +...+..+.. ++. .+++.|+.... +.
T Consensus 211 ~L~~a~P~GIDvyfeNVGg-~v~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~ 288 (340)
T COG2130 211 ALKEACPKGIDVYFENVGG-EVLDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQR 288 (340)
T ss_pred HHHHHCCCCeEEEEEcCCc-hHHHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhh
Confidence 9999998899999999999 6699999999995 99999997642 1112222221 222 67788877632 21
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
..+-.+++..++++|+|+..+ +-+-.||.+++||.-|.+++.. |.|+++.+
T Consensus 289 ~~e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 289 FPEALRELGGWVKEGKIQYRE--TIVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred hHHHHHHHHHHHHcCceeeEe--eehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 224577899999999999875 3334799999999999999987 99999864
|
|
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=260.33 Aligned_cols=311 Identities=23% Similarity=0.320 Sum_probs=250.4
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.+++.+ +.+.+.+.|.+.+++|+|++.++++|++|+....+.... ...|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 789999988876 778888888889999999999999999999887776432 23577899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|+..... ++ .. .|+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~------------------------~~--~~------------------~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAGG------------------------LG--GL------------------QGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccCC------------------------cC--CC------------------CCceeEEEEecHHHcccCCCC
Confidence 99999864310 00 01 248999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.+++.+.+||+++.+..++.+|++|+|+|+ |++|++++++|+.+|+ +|+++.++ ++.+.++++|++.+++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIY 194 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEe
Confidence 9999999999899999998878889999999999986 9999999999999999 78888777 8889999999988887
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGG 324 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 324 (379)
... . +.+.+.+.+.+ ++|+++|++++ ..+..+++++++. |+++.+|... ........ .++.++.+.....
T Consensus 195 ~~~--~-~~~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 265 (326)
T cd08272 195 YRE--T-VVEYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALY-GRVVSILGGA---THDLAPLS-FRNATYSGVFTLL 265 (326)
T ss_pred cch--h-HHHHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccC-CEEEEEecCC---ccchhhHh-hhcceEEEEEccc
Confidence 755 4 77788888877 89999999998 4588899999996 9999998653 11211111 2355555544321
Q ss_pred --C------cccccHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 325 --F------KSRSQVPWLVDKYMKKEIKVDEYVT-HNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 325 --~------~~~~~~~~~~~~~~~~~i~~~~~i~-~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
. .....+..+++++.++.+... ++ +.|++++++++++.+.+++.. |+|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 266 PLLTGEGRAHHGEILREAARLVERGQLRPL--LDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred ccccccchhhHHHHHHHHHHHHHCCCcccc--cccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 1 012356778888888887643 34 889999999999999887766 998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=258.75 Aligned_cols=314 Identities=23% Similarity=0.304 Sum_probs=247.6
Q ss_pred ceeeeeecCC--CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPN--KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~--~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
|||+++.+++ +.+.++++|.|++.+++|+||+.++++|++|+....+.......|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 7999999999 34999999999999999999999999999999887776543344778999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++.+.. + .+ |+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~-------------------------~---~~------------------~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASL-------------------------A---RG------------------GSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCC-------------------------C---CC------------------ccceeEEEeCHHHeEECCCCC
Confidence 9999864320 0 12 389999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++.+++.+++.+.+|++++.+.+++.+|++|+|+|+ |++|++++++|+..|+ +++.+. ++++.+.++++|++.+++.
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~ 192 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDY 192 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecC
Confidence 999999999999999999888888999999999998 8999999999999999 777775 6778888899999888877
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc-cccCcceeeeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE-ISTRPFQLVTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 324 (379)
.. .++.+.+.+...+ ++|++++++++.. ....++++++. |+++.+|....... ..+.....+..+.+.......
T Consensus 193 ~~--~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (325)
T cd08271 193 ND--EDVCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFN-GHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHG 268 (325)
T ss_pred CC--ccHHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccC-CEEEEEcCCCCCcchhHHhhcceEEEEEeccccccc
Confidence 65 5677777877776 8999999999854 67789999996 99999875432111 011100111133332222111
Q ss_pred C-----cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 325 F-----KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 325 ~-----~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
. ...+.+.++++++.++.+.+. ..+.|+++++.+|++.+.+++.. |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 269 DPAAWQDLRYAGEELLELLAAGKLEPL--VIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred chhhHHHHHHHHHHHHHHHHCCCeeec--cceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 1 111235678888888887643 45789999999999999988766 988863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=259.81 Aligned_cols=305 Identities=25% Similarity=0.324 Sum_probs=239.9
Q ss_pred eeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcCC
Q 016978 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||+++...+.+ +.+.+++.|.|.+++|+|++.++++|+.|+..+.|..+.. .+|.++|||++|+|+.+|++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 78888888765 8888999999999999999999999999999888765432 56889999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|++... + |+|++|+.++.+.++++|+++
T Consensus 82 Gd~V~~~~~-------------------------------~------------------g~~~~~~~~~~~~~~~~p~~~ 112 (331)
T cd08273 82 GDRVAALTR-------------------------------V------------------GGNAEYINLDAKYLVPVPEGV 112 (331)
T ss_pred CCEEEEeCC-------------------------------C------------------cceeeEEEechHHeEECCCCC
Confidence 999975421 1 389999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++.+++.+++++.+||+++.+.+++.+|++|+|+|+ |++|++++++|+.+|+ +|+++.. +++.+.++++|+.. ++.
T Consensus 113 ~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~ 189 (331)
T cd08273 113 DAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDY 189 (331)
T ss_pred CHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcC
Confidence 999999999999999999877788999999999987 9999999999999999 7888877 88899999999754 444
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc--cccCcc-----------eeee
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE--ISTRPF-----------QLVT 313 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~--~~~~~~-----------~~~~ 313 (379)
.. .++... +...+++|+++||+|+.. +..++++++++ |+++.+|....... +.+.+. ....
T Consensus 190 ~~--~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (331)
T cd08273 190 RT--KDWLPA--MLTPGGVDVVFDGVGGES-YEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPT 263 (331)
T ss_pred CC--cchhhh--hccCCCceEEEECCchHH-HHHHHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceec
Confidence 33 333333 233348999999999865 88999999996 99999987543222 111110 1111
Q ss_pred --ccEEEeeecCCC----cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 314 --GRVWKGTAFGGF----KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 314 --~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
..+......... .....+.++++++.++.+.+ .+.+.|+++++++|++.+.+++.. |+|+
T Consensus 264 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 264 GRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred cceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 222222221100 11245778889999998874 367889999999999998887765 8775
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=254.47 Aligned_cols=268 Identities=32% Similarity=0.471 Sum_probs=218.7
Q ss_pred eEEEEEeeeeccccccccccCCCC-CCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCC
Q 016978 36 EVRIKILFTALCHTDAYTWSGKDP-EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (379)
Q Consensus 36 ~VlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~ 114 (379)
||+|++.++++|+.|+..+.|..+ ....|.++|+|++|+|+++|++++.+++||+|++.+...|+.|++|+. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999888765 335678999999999999999999999999999999999999999997 666
Q ss_pred CccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCC
Q 016978 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (379)
Q Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 194 (379)
.... .+.. . .|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+++
T Consensus 77 ~~~~---~~~~-~------------------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LGEG-L------------------DGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---eccc-c------------------CCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 5442 1111 2 2499999999999999999999999999999999999999877777799
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 273 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g 273 (379)
|++|||+|+|++|++++++++.+|. +|+++++++++.+.++++|++++++..+ .++.+.+. ...+ ++|+++|+++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~-~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE--EDLEEELR-LTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc--CCHHHHHH-HhcCCCCCEEEECCC
Confidence 9999999996699999999999998 8999999999999999999988887765 55555555 4444 8999999999
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcccccHHHHHHH
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDK 337 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 337 (379)
....+..++++++++ |+++.+|..............+.++.++.++..+.. .++++++++
T Consensus 211 ~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (271)
T cd05188 211 GPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTR---EDFEEALDL 270 (271)
T ss_pred CHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence 866789999999996 999999876443222222223344777777765432 356666554
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=260.29 Aligned_cols=304 Identities=22% Similarity=0.257 Sum_probs=238.0
Q ss_pred eeeeeecCCC----C--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCC
Q 016978 11 KAAVAWEPNK----P--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 11 ~a~~~~~~~~----~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
||+++.+.++ + ++++++|.|++.+++|+||+.++++|+.|+....+... ....+.++|+|++|+|+++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 5666655442 1 88999999999999999999999999987655444321 1123457899999999999964
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC-cce
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV 160 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~~ 160 (379)
.+++||+|+.. ++|++|+.++. +.+
T Consensus 83 --~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~~ 108 (329)
T cd05288 83 --DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASGL 108 (329)
T ss_pred --CCCCCCEEecc----------------------------------------------------cceEEEEEecchhhc
Confidence 79999999631 27999999999 999
Q ss_pred EecCCCCC--cccccc-ccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 161 AKIDPQAP--LDKVCL-LGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 161 ~~iP~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
+++|++++ +..++. +++++.+||+++...+.+.+|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++
T Consensus 109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~ 187 (329)
T cd05288 109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV 187 (329)
T ss_pred EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99999995 445555 88899999999878788999999999986 9999999999999999 8999989999999998
Q ss_pred h-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccc----c-Ccce
Q 016978 237 N-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS----T-RPFQ 310 (379)
Q Consensus 237 ~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~----~-~~~~ 310 (379)
+ +|+++++++++ .++.+.+.+.+.+++|++|||+|+ ..+..++++++++ |+++.+|......... + ....
T Consensus 188 ~~~g~~~~~~~~~--~~~~~~v~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~ 263 (329)
T cd05288 188 EELGFDAAINYKT--PDLAEALKEAAPDGIDVYFDNVGG-EILDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLGNI 263 (329)
T ss_pred hhcCCceEEecCC--hhHHHHHHHhccCCceEEEEcchH-HHHHHHHHhcCCC-ceEEEEeeccCcccccccccccHHHH
Confidence 8 99999988876 567777777765589999999998 6699999999996 9999998654321111 1 1122
Q ss_pred eeeccEEEeeecCCCcc--cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 311 LVTGRVWKGTAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 311 ~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
+.++.++.+..+..... ...+.++++++.++.+.+.+ ...++++++++|++.+.+++.. |+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 264 ITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred hhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHHHHHHHHHHHhcCCCccceeC
Confidence 33466766655433211 23567788899999988653 3558999999999999887765 7764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=253.41 Aligned_cols=315 Identities=27% Similarity=0.385 Sum_probs=249.5
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||++++...+.+ +.+.+.+.|.+.+++|+|++.++++|+.|+.+..+..... .+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 688888876653 7777888888899999999999999999998887765332 4577899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.+...+. .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~--------------------------~~------------------g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAADLG--------------------------QY------------------GTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEeccccccC--------------------------CC------------------ccceEEEEechHhcEeCCCC
Confidence 99999875431100 12 39999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.+++.+.++|+++.....+.++++|+|+|+ |.+|++++++++..|+ +++.+++++++.+.++++|++.+++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 195 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIV 195 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999877888999999999988 9999999999999999 8898888999999999999888887
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcc-eeeeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF-QLVTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 323 (379)
.+. .++.+.+.+.+.+ ++|+++++.++ .....++++++++ |+++.+|..... ...+... .+.++.++.+..+.
T Consensus 196 ~~~--~~~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (328)
T cd08268 196 TDE--EDLVAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPG-GTLVVYGALSGE-PTPFPLKAALKKSLTFRGYSLD 270 (328)
T ss_pred cCC--ccHHHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccC-CEEEEEEeCCCC-CCCCchHHHhhcCCEEEEEecc
Confidence 765 5677777777766 89999999998 5688899999996 999999865431 1122222 23336666655443
Q ss_pred CC-ccccc----HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 324 GF-KSRSQ----VPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 324 ~~-~~~~~----~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.. ....+ +..+.+++.++.+.+. ....|++++++++++.+.+++.. |+|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 327 (328)
T cd08268 271 EITLDPEARRRAIAFILDGLASGALKPV--VDRVFPFDDIVEAHRYLESGQQIGKIVVT 327 (328)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCcCC--cccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence 21 11122 3344555667776643 56789999999999999887766 98875
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=252.22 Aligned_cols=292 Identities=24% Similarity=0.362 Sum_probs=233.6
Q ss_pred CCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccC
Q 016978 29 VAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKS 107 (379)
Q Consensus 29 ~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~ 107 (379)
.|++.+++|+||+.++++|+.|+..+.+..+.. .+|.++|+|++|+|+++|++++++++||+|++....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 577889999999999999999999888765432 568899999999999999999999999999864210
Q ss_pred CCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhh
Q 016978 108 GKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187 (379)
Q Consensus 108 ~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~ 187 (379)
.+ |+|++|+.++.+.++++|+++++.+++.++..+.+||+++
T Consensus 72 -------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 -------------------SM------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred -------------------CC------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 12 3999999999999999999999999999999999999986
Q ss_pred hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-Cc
Q 016978 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GV 265 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~ 265 (379)
+..++++|++|+|+|+ |++|++++|+|+.+|+ +++++.+++++.+.++++|++.+++... .++.+.+.+.+++ ++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~i~~~~~~~~~ 190 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE--EDFEEEIMRLTGGRGV 190 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC--ccHHHHHHHHcCCCCc
Confidence 5788999999999966 9999999999999999 8999989999999999999999988766 6777788888877 99
Q ss_pred cEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC------cccccHHHHHHHHH
Q 016978 266 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF------KSRSQVPWLVDKYM 339 (379)
Q Consensus 266 d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~ 339 (379)
|+++|++++ ......++++++. |+++.+|.........+....+..+..+....+... .....+.++++++.
T Consensus 191 d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (303)
T cd08251 191 DVVINTLSG-EAIQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVE 268 (303)
T ss_pred eEEEECCcH-HHHHHHHHHhccC-cEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHH
Confidence 999999976 6688999999996 999999865322222222222222222222211110 01124667888888
Q ss_pred cCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 340 KKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 340 ~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
++.+++. ..+.|++++++++++.+.+++.. |+++
T Consensus 269 ~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 269 EGELRPT--VSRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred CCCccCC--CceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 8887743 56889999999999999988766 7764
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=252.51 Aligned_cols=311 Identities=23% Similarity=0.307 Sum_probs=251.7
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+.+..++.+ +.+.+.+.|.+.+++|+|++.++++|+.|+....+..+. ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 688888887765 667777777788999999999999999999888775533 24578899999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|+... .+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALV-------------------------------AG------------------GGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEcc-------------------------------CC------------------CcceeEEEecHHHcEeCCCC
Confidence 999997531 11 38999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+++.+++++.++|+++.+..++.+|++|+|+|+ |++|++++++++.+|+ +|+++.+++++.+.++++|++.+++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 190 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAIN 190 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence 9999999999999999998888889999999999987 9999999999999999 8889988999999999999888877
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
... .++...+.....+ ++|+++|+.|+ ..+..++.+++++ |+++.+|....... .+++..+ .++.++.+....
T Consensus 191 ~~~--~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (325)
T TIGR02824 191 YRE--EDFVEVVKAETGGKGVDVILDIVGG-SYLNRNIKALALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTLR 265 (325)
T ss_pred cCc--hhHHHHHHHHcCCCCeEEEEECCch-HHHHHHHHhhccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEehh
Confidence 655 5677777777776 89999999998 4688899999996 99999987432211 3333333 447777776654
Q ss_pred CC-cc------cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GF-KS------RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~-~~------~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.. .. ...+.++++++.++.+.+ .+.+.|++++++++++.+.+++.. |+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 266 ARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 32 11 112355677888888764 367889999999999998887766 888763
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=250.68 Aligned_cols=301 Identities=24% Similarity=0.297 Sum_probs=239.7
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
|||+++..++.. +.+.+.+.|.+.+++|+||+.++++|+.|+..+.|... ...+|.++|||++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 688898887764 56777888888999999999999999999988877542 2355889999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||+|+..+.. + .+ |+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~-------------------------~---~~------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF-------------------------T---RG------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC-------------------------C---CC------------------CcceeEEEecHHHhccCC
Confidence 9999999865320 0 12 389999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+++++..++.+++.+.++|+++.+...+.+|++|||+|+ |.+|++++++++..|+ +++++..++ +.+.++++|++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~ 192 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV 192 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence 999999999888899999998877777999999999997 9999999999999999 788887777 8888899998888
Q ss_pred eCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeec
Q 016978 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF 322 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (379)
++... .++.. .+.+ ++|+++|++|+. ....++++++++ |+++.+|....... ..+..+.++....+
T Consensus 193 ~~~~~--~~~~~----~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~-----~~~~~~~~~~~~~~ 259 (309)
T cd05289 193 IDYTK--GDFER----AAAPGGVDAVLDTVGGE-TLARSLALVKPG-GRLVSIAGPPPAEQ-----AAKRRGVRAGFVFV 259 (309)
T ss_pred EeCCC--Cchhh----ccCCCCceEEEECCchH-HHHHHHHHHhcC-cEEEEEcCCCcchh-----hhhhccceEEEEEe
Confidence 87654 33332 3334 899999999985 689999999996 99999987543111 11122344443333
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
... ...+.++++++.++.+.+ ++.+.|+++++++|++.+.+++.. |+|+
T Consensus 260 ~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 260 EPD--GEQLAELAELVEAGKLRP--VVDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred ccc--HHHHHHHHHHHHCCCEEE--eeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 211 357888999999988763 367889999999999998887765 7763
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=245.98 Aligned_cols=309 Identities=30% Similarity=0.446 Sum_probs=247.9
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCC-CCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCc
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQ-AGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
|+|+++..++.+ +.+.+.+ |.+. +++++|++.++++|+.|+..+.|.... ...|.++|||++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688898865543 7777777 6665 599999999999999999888776532 2446689999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|+..+ .. |++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~-------------------------------~~------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALT-------------------------------GQ------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEec-------------------------------CC------------------ceeEEEEEcCHHHceeCCC
Confidence 9999998542 01 3899999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
++++.+++.+...+.+||+++....++.++++|+|+|+ |++|++++++|+..|+ +|+.++.++++.+.++++|++.++
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVI 189 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceee
Confidence 99998888888899999998777788999999999998 9999999999999999 799998999999999999998888
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-ceeeeccEEEeeec
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLVTGRVWKGTAF 322 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~~~~~~i~~~~~ 322 (379)
+... .++.+.+.+.+++ ++|.++|++|+ .....++++++++ |+++.+|....... .+.+ ..+.++.++.+...
T Consensus 190 ~~~~--~~~~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (323)
T cd08241 190 DYRD--PDLRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIGFASGEIP-QIPANLLLLKNISVVGVYW 264 (323)
T ss_pred ecCC--ccHHHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC-CEEEEEccCCCCcC-cCCHHHHhhcCcEEEEEec
Confidence 7765 5677788888776 89999999998 6688899999996 99999987432111 1112 11233666666654
Q ss_pred CCCc------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEe
Q 016978 323 GGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLK 376 (379)
Q Consensus 323 ~~~~------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~ 376 (379)
.... ....+.++++++.++.+.+ .....|+++++.+|++.+.+++.. |++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 265 GAYARREPELLRANLAELFDLLAEGKIRP--HVSAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred ccccchhHHHHHHHHHHHHHHHHCCCccc--ccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 4321 1134677888898888764 367889999999999998887765 88763
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-31 Score=245.68 Aligned_cols=310 Identities=23% Similarity=0.320 Sum_probs=242.1
Q ss_pred eeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
||+.+...+.+ +.+.+.+.|.+.+++|+||+.++++|+.|+..+.|..+. ...|.++|||++|+|+.+|+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 45666655542 777788888889999999999999999999988776532 245778999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
||+|+.... + |+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~-------------------------------~------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR-------------------------------F------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC-------------------------------C------------------CeeeeEEEecHHHeEECCCCC
Confidence 999985421 1 389999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHHHhcCCceEeC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~~~lg~~~v~~ 245 (379)
++.+++.+++.+.++|+++.+..++++|++|+|+|+ |++|++++++|+.+ . .+.+++ ..+++.+.++++|++.+++
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-P-NVTVVGTASASKHEALKENGVTHVID 189 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-c-CcEEEEeCCHHHHHHHHHcCCcEEee
Confidence 999999998999999999888888999999999998 99999999999999 2 233332 3456788888999988888
Q ss_pred CCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCc--ccc-------------cCcce
Q 016978 246 PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ--EIS-------------TRPFQ 310 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~--~~~-------------~~~~~ 310 (379)
.+. .++.+.+++.+.+++|+++|+.|+ .....++++++++ |+++.+|...... .+. +.+..
T Consensus 190 ~~~--~~~~~~~~~~~~~~~d~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (337)
T cd08275 190 YRT--QDYVEEVKKISPEGVDIVLDALGG-EDTRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMK 265 (337)
T ss_pred CCC--CcHHHHHHHHhCCCceEEEECCcH-HHHHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHH
Confidence 765 677777877775589999999998 4588899999996 9999998654211 111 11111
Q ss_pred -eeeccEEEeeecCCCcc-----cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 311 -LVTGRVWKGTAFGGFKS-----RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 311 -~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+..+.++.+..+..... ...+.++++++.++.+.+. ....|++++++++++.+.+++.. |+++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 266 LISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPK--IDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred HhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCc--eeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 22366666665432111 1235678888888887643 56889999999999999988766 998864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=247.02 Aligned_cols=295 Identities=25% Similarity=0.315 Sum_probs=227.3
Q ss_pred EEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC---CCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCC
Q 016978 23 VIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99 (379)
Q Consensus 23 ~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 99 (379)
.+.+.+.|++.+++|+|++.++++|++|+..+.|..+. ...|..+|||++|+|+++|++++.+++||+|+......
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 77888999999999999999999999999988776521 23467899999999999999999999999998653210
Q ss_pred CCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccc
Q 016978 100 RECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179 (379)
Q Consensus 100 ~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~ 179 (379)
.. |+|++|+.++.+.++++|+++++.+++.+++.+
T Consensus 94 ---------------------------~~------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 94 ---------------------------GG------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred ---------------------------CC------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 12 389999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHH
Q 016978 180 PTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 180 ~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~ 258 (379)
.+||+++....++++|++|+|+|+ |++|++++++|+.+|+ +|+++..+ ++.+.++++|++++++... .++. .
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~---~ 201 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT--EDFV---A 201 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC--CCcc---h
Confidence 999999877777999999999998 9999999999999999 88888665 8888889999988887655 3332 3
Q ss_pred HhcCC-CccEEEEcCCCH-HHHHHHHHHhccCCceEEEEccCCCCccccc---CcceeeeccEEEeeecCCCcccccHHH
Q 016978 259 DLTDG-GVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGVAASGQEIST---RPFQLVTGRVWKGTAFGGFKSRSQVPW 333 (379)
Q Consensus 259 ~~~~~-g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~ 333 (379)
..+.+ ++|+++||+|+. ......+..++++ |+++.+|.......... ..........+...... .....+.+
T Consensus 202 ~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 278 (319)
T cd08267 202 LTAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAK--PNAEDLEQ 278 (319)
T ss_pred hccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccccccccccccchhhccccceEEEEEec--CCHHHHHH
Confidence 34445 899999999852 2233444448995 99999987543222111 01111112222222211 12467888
Q ss_pred HHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 334 LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 334 ~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
+++++.++++.+ .+.+.|+++++++|++.+.+++.. |+++
T Consensus 279 ~~~~l~~~~~~~--~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 279 LAELVEEGKLKP--VIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHHCCCeee--eeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 999999988764 367889999999999999987765 7763
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=238.75 Aligned_cols=282 Identities=22% Similarity=0.264 Sum_probs=226.9
Q ss_pred CeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCC
Q 016978 35 GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCG 114 (379)
Q Consensus 35 ~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~ 114 (379)
++|+||+.++++|++|+....|.. ..+|.++|||++|+|+++|++++.+++||+|++..
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 589999999999999999887764 23577899999999999999999999999997531
Q ss_pred CccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCC
Q 016978 115 KVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEP 194 (379)
Q Consensus 115 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~ 194 (379)
+ |+|++|+.++.+.++++|+++++.+++.+++++.++|.++.+..++++
T Consensus 60 -------------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------P------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------c------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1 389999999999999999999999999998899999998878788999
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC--CceEeCCCCCCchHHHHHHHhcCC-CccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG--VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg--~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid 270 (379)
|++|+|+|+ |++|++++|+|+.+|+ +++++..++++.+.++++| ++.+++..+ .++.+.+++.+.+ ++|+++|
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~ 185 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD--LSFADGILRATGGRGVDVVLN 185 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc--hhHHHHHHHHhCCCCceEEEe
Confidence 999999976 9999999999999999 8999988889999999888 677777655 5777888888776 8999999
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC------cccccHHHHHHHHHcCCCC
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF------KSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~i~ 344 (379)
+.|+. .+..++++++++ |+++.+|..............+..+.++....+... .....+.++++++.++++.
T Consensus 186 ~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (293)
T cd05195 186 SLSGE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK 263 (293)
T ss_pred CCCch-HHHHHHHhcccC-ceEEEeeccccccCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc
Confidence 99985 799999999996 999999875432111122222222344433322211 0123467788888888876
Q ss_pred CCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 345 VDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 345 ~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
+ .....++++++++|++.+.+++.. |+|+
T Consensus 264 ~--~~~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 264 P--LPPTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred c--CCCeeechhhHHHHHHHHhcCCCCceecC
Confidence 3 356789999999999999988765 7763
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=233.78 Aligned_cols=277 Identities=22% Similarity=0.361 Sum_probs=222.2
Q ss_pred EEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccC
Q 016978 39 IKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118 (379)
Q Consensus 39 V~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~ 118 (379)
||+.++++|++|++...|..+ .|.++|||++|+|+++|+.++.+++||+|+...
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 899999999999998877643 357899999999999999999999999997531
Q ss_pred ccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEE
Q 016978 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIV 198 (379)
Q Consensus 119 ~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V 198 (379)
+ |+|++|+.++.+.++++|+++++.+++.+++.+.++|.++.+...+.+|++|
T Consensus 56 ---------~------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 56 ---------P------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ---------C------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 1 3899999999999999999999999999999999999987788889999999
Q ss_pred EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC--ceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCC
Q 016978 199 AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGN 274 (379)
Q Consensus 199 lI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~ 274 (379)
+|+|+ |.+|++++++|+.+|+ +|+++.+++++.+.++++|+ +.++++.+ .++.+.+.+...+ ++|+++|++++
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~~~ 185 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD--LSFADEILRATGGRGVDVVLNSLAG 185 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC--ccHHHHHHHHhCCCCcEEEEeCCCH
Confidence 99986 9999999999999999 89999889999999999998 67777765 5677778777776 89999999986
Q ss_pred HHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC-----cccccHHHHHHHHHcCCCCCCCce
Q 016978 275 VSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF-----KSRSQVPWLVDKYMKKEIKVDEYV 349 (379)
Q Consensus 275 ~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~i 349 (379)
..+..++.+++++ |+++.+|.........+.+..+..+.++.+..+... .....+.++++++.++++.+. .
T Consensus 186 -~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 261 (288)
T smart00829 186 -EFLDASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--P 261 (288)
T ss_pred -HHHHHHHHhccCC-cEEEEEcCcCCccccccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--C
Confidence 6688999999996 999999875321112222222222444444332211 011246678888888887753 4
Q ss_pred eeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 350 THNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 350 ~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
.+.|+++++.++++.+.+++.. |+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 262 VTVFPISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred ceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence 5779999999999999988765 7763
|
Enoylreductase in Polyketide synthases. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=218.52 Aligned_cols=250 Identities=28% Similarity=0.386 Sum_probs=195.4
Q ss_pred CCCCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCcccccc
Q 016978 56 GKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135 (379)
Q Consensus 56 g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~ 135 (379)
|.++. ++|.++|||++|+|+++|++++++++||+|+..
T Consensus 14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------------------- 51 (277)
T cd08255 14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----------------------------------------- 51 (277)
T ss_pred cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence 44444 488999999999999999999999999999742
Q ss_pred CCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHH
Q 016978 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAK 215 (379)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~ 215 (379)
+.|++|+.++.+.++++|+++++.+++.+ +.+.+||+++ ..+++++|++|||+|+|++|++++++|+
T Consensus 52 -----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~ 118 (277)
T cd08255 52 -----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK 118 (277)
T ss_pred -----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 16899999999999999999999998888 7899999986 5788999999999988999999999999
Q ss_pred HcCCCeEEEEcCChhHHHHHHhcC-CceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEE
Q 016978 216 AAGASRVIGIDIDPKKFDRAKNFG-VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 216 ~~g~~~vi~v~~~~~~~~~~~~lg-~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv 293 (379)
.+|+++|+++++++++.++++++| ++.++...+ ..+.+ ++|++||+++....+...+++++++ |+++
T Consensus 119 ~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~ 187 (277)
T cd08255 119 AAGAREVVGVDPDAARRELAEALGPADPVAADTA----------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVV 187 (277)
T ss_pred HcCCCcEEEECCCHHHHHHHHHcCCCccccccch----------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEE
Confidence 999944999999999999999999 555544322 11233 8999999988877889999999996 9999
Q ss_pred EEccCCCCcccccCcceee-eccEEEeeecCCC---------cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHH
Q 016978 294 IVGVAASGQEISTRPFQLV-TGRVWKGTAFGGF---------KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 363 (379)
Q Consensus 294 ~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~ 363 (379)
.+|..... ..... ..+. ...++.+...... ...+.+.++++++.++.+... +.+.|+++++++|++
T Consensus 188 ~~g~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~~~a~~ 263 (277)
T cd08255 188 LVGWYGLK-PLLLG-EEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEAL--ITHRVPFEDAPEAYR 263 (277)
T ss_pred EEeccCCC-ccccH-HHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcccc--ccCccCHHHHHHHHH
Confidence 99875432 11111 1111 1334444433211 112468889999999987643 578899999999999
Q ss_pred HHhcCC--eeEEEE
Q 016978 364 YMHGGD--CLRCVL 375 (379)
Q Consensus 364 ~~~~~~--~~Kvvi 375 (379)
.+.+++ ..|+++
T Consensus 264 ~~~~~~~~~~k~~~ 277 (277)
T cd08255 264 LLFEDPPECLKVVL 277 (277)
T ss_pred HHHcCCccceeeeC
Confidence 998883 348874
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=236.12 Aligned_cols=292 Identities=19% Similarity=0.237 Sum_probs=241.2
Q ss_pred eEEEEeeCC---CCCCCeEEEEEeeeeccccccccccCCCCCCCCC-------cccccceeEEEEEeCCCCCCcCCCCEE
Q 016978 22 LVIEDVQVA---PPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP-------CILGHEAAGIVESVGEGVTEVQPGDHV 91 (379)
Q Consensus 22 ~~~~~~~~p---~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p-------~~~G~e~~G~V~~vG~~v~~~~~Gd~V 91 (379)
+.+.+-|.. +..++.=+.-|-|+.||..|++...|..+...+| .++|-|++|+ .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 444455433 2356677899999999999999999988766554 4789999997 4569999
Q ss_pred eecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccc
Q 016978 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (379)
Q Consensus 92 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~ 171 (379)
+..... -+++..+.++.+++|.+|.+.++++
T Consensus 1499 M~mvpA-------------------------------------------------ksLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPA-------------------------------------------------KSLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeeeh-------------------------------------------------hhhhhhhhcchhhhhhCCcccchhh
Confidence 755320 1678888899999999999999999
Q ss_pred cccccccchhhhhhhhhccCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC----CceEeCC
Q 016978 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG----VTEFVNP 246 (379)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg----~~~v~~~ 246 (379)
|+..|+.++|+|+||..++..++|++|||+ |+|++|++|+.+|.+.|+ +|+.+..+.||++++.++. .+.+-|.
T Consensus 1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NS 1608 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANS 1608 (2376)
T ss_pred cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccc
Confidence 999999999999999999999999999999 569999999999999999 8999999999999998643 4445566
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
++ .+|...+++.|+| |+|+|+++... +-++.+++||+.. |+|..+|...-..+.+..+..|++|.++.|..+-+.
T Consensus 1609 Rd--tsFEq~vl~~T~GrGVdlVLNSLae-EkLQASiRCLa~~-GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsv 1684 (2376)
T KOG1202|consen 1609 RD--TSFEQHVLWHTKGRGVDLVLNSLAE-EKLQASIRCLALH-GRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSV 1684 (2376)
T ss_pred cc--ccHHHHHHHHhcCCCeeeehhhhhH-HHHHHHHHHHHhc-CeeeeecceecccCCcchhhhhhcccceeeeehhhh
Confidence 55 8999999999999 99999999888 5599999999995 999999987655666777777888898888776544
Q ss_pred c--ccccHHHHHHHHHcCCCC--CCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 326 K--SRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 326 ~--~~~~~~~~~~~~~~~~i~--~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
- ..+++.++..++++|.-. +.|+.+++|+-.++++||+++.++++. |||+++
T Consensus 1685 mege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1685 MEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred hcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEE
Confidence 2 223566677777665333 456678999999999999999999998 999986
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=190.74 Aligned_cols=296 Identities=22% Similarity=0.259 Sum_probs=220.5
Q ss_pred EEEEeeCC-CCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccc----cceeEEEEEeCCCCCCcCCCCEEeecCC
Q 016978 23 VIEDVQVA-PPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILG----HEAAGIVESVGEGVTEVQPGDHVIPCYQ 96 (379)
Q Consensus 23 ~~~~~~~p-~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 96 (379)
...+++++ ++++++|+||..|-+..|.-..-++-..+. .--|+.|| ..++|+|++. +.+++++||.|.
T Consensus 25 ~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~---- 98 (343)
T KOG1196|consen 25 TTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVW---- 98 (343)
T ss_pred eeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEE----
Confidence 33445544 458899999999999876543333221111 11122333 2789999994 668899999995
Q ss_pred cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCC--CCCcccc
Q 016978 97 AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDP--QAPLDKV 172 (379)
Q Consensus 97 ~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~--~~~~~~a 172 (379)
|.. +|.||..+++. ..++||. ++++...
T Consensus 99 --------------------------g~~----------------------gWeeysii~~~~~~~~ki~~~~~~pLs~y 130 (343)
T KOG1196|consen 99 --------------------------GIV----------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYY 130 (343)
T ss_pred --------------------------Eec----------------------cceEEEEecCcchhcccCCCCCccCHhhh
Confidence 333 89999988764 4455543 4444443
Q ss_pred c-cccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCC
Q 016978 173 C-LLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDH 249 (379)
Q Consensus 173 a-~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~ 249 (379)
. ++..+.+|||..+.+....++|++|+|.|| |++|+++.|+|+.+|+ +|+++..++||.+++++ +|.+..+||.+
T Consensus 131 lg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~- 208 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE- 208 (343)
T ss_pred hhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC-
Confidence 3 466789999999999999999999999988 9999999999999999 99999999999999885 79999999988
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC---Cccccc--CcceeeeccEEEeeecCC
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS---GQEIST--RPFQLVTGRVWKGTAFGG 324 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~---~~~~~~--~~~~~~~~~~i~~~~~~~ 324 (379)
+.+..+++++..+.|+|+-||.+|+ ..+...+..|+.. |+++.+|+.+. +.+..+ ....+.+.+.+.++....
T Consensus 209 e~~~~~aL~r~~P~GIDiYfeNVGG-~~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d 286 (343)
T KOG1196|consen 209 ESDLSAALKRCFPEGIDIYFENVGG-KMLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSD 286 (343)
T ss_pred ccCHHHHHHHhCCCcceEEEeccCc-HHHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeec
Confidence 2489999999888899999999999 5588999999995 99999997641 111111 122234467777755443
Q ss_pred Cc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 325 FK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 325 ~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
+. ...-++.+..++++|+|...+-+.. .|+..+.||..|-+++.. |.++++.
T Consensus 287 ~~d~~~k~ld~l~~~ikegKI~y~edi~~--Glen~P~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 287 YLDKYPKFLDFLLPYIKEGKITYVEDIAD--GLENGPSALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred hhhhhHHHHHHHHHHHhcCceEEehhHHH--HHhccHHHHHHHhccCcccceEEEee
Confidence 32 2334677888899999996544433 699999999999999886 9998875
|
|
| >PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=162.00 Aligned_cols=108 Identities=37% Similarity=0.689 Sum_probs=94.0
Q ss_pred CCeEEEEEeeeeccccccccccCC-CCCCCCCcccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCC
Q 016978 34 AGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112 (379)
Q Consensus 34 ~~~VlV~v~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~ 112 (379)
|+||+|||.+++||++|++.+.|. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 689999999999999999999994 4555889999999999999999999999999999999998999999999999999
Q ss_pred CCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 113 c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
|.+... +|.. .+| +|+||+.+|+++++|+
T Consensus 81 c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLG-LDG------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTS-STC------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcC-CCC------------------cccCeEEEehHHEEEC
Confidence 987664 3433 445 9999999999999985
|
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=132.05 Aligned_cols=127 Identities=29% Similarity=0.445 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHH
Q 016978 205 TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALE 283 (379)
Q Consensus 205 ~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~ 283 (379)
++|++++|+|+++|+ +|++++++++|+++++++|+++++++++ .++.+.+++.+++ ++|+||||+|++..++.+++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--cccccccccccccccceEEEEecCcHHHHHHHHH
Confidence 589999999999996 9999999999999999999999999987 7799999999998 99999999998899999999
Q ss_pred HhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCcccccHHHHHHHHH
Q 016978 284 CCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYM 339 (379)
Q Consensus 284 ~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 339 (379)
+++++ |+++.+|... ....+++...++. ++++.+++.+. .+++++++++++
T Consensus 78 ~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la 129 (130)
T PF00107_consen 78 LLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA 129 (130)
T ss_dssp HEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred HhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence 99996 9999999976 4456666666555 89999998764 468888888775
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=123.88 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=133.4
Q ss_pred hhhhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc
Q 016978 183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 183 ~~~l~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
+.++.+..+ ..+|++|+|+|+|.+|+.+++.++.+|+ +|++++.++.|++.++.+|++.+ + ..+.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~-------~~e~v---- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T-------MEEAV---- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c-------HHHHH----
Confidence 344445444 4689999999999999999999999999 89999999999999999998432 1 11122
Q ss_pred CCCccEEEEcCCCHHHHHHH-HHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCCcccccHH--HHHHH
Q 016978 262 DGGVDYSFECIGNVSVMRAA-LECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVP--WLVDK 337 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~~-~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~ 337 (379)
.++|+||+|+|+...++.. +..++++ |+++.+|.. ...++...+.. ++++.++..... ..+++ +.+.+
T Consensus 256 -~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI~L 327 (413)
T cd00401 256 -KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRIIL 327 (413)
T ss_pred -cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchhhh
Confidence 2589999999998888876 9999996 999999864 23444444443 666666643321 12455 78999
Q ss_pred HHcCCC-CCCCceeee-----eecc-hHHHHHHHHhcCCee--EEEEecC
Q 016978 338 YMKKEI-KVDEYVTHN-----MTLG-EINEAFRYMHGGDCL--RCVLKMQ 378 (379)
Q Consensus 338 ~~~~~i-~~~~~i~~~-----~~~~-~i~~A~~~~~~~~~~--Kvvi~~~ 378 (379)
+.+|++ .+...+.+. |+|+ |+.+++..+.+++.. |+++.++
T Consensus 328 La~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 328 LAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred hhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 999999 777778888 8999 999999999887653 8887653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=118.28 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=112.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCC-----------CchHHHHHHH
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH-----------DKPIQQVLVD 259 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~-----------~~~~~~~i~~ 259 (379)
..++++|+|+|+|.+|+++++.|+.+|+ +|++++.++++++.++++|++.+ ++..+. +.++.+..++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 5689999999999999999999999999 89999999999999999999854 554321 1233333333
Q ss_pred h-cC--CCccEEEEcCCC-----HHHH-HHHHHHhccCCceEEEEccCCCC-cccccCcceee--eccEEEeeecCCCcc
Q 016978 260 L-TD--GGVDYSFECIGN-----VSVM-RAALECCHKGWGTSVIVGVAASG-QEISTRPFQLV--TGRVWKGTAFGGFKS 327 (379)
Q Consensus 260 ~-~~--~g~d~vid~~g~-----~~~~-~~~~~~l~~~~G~iv~~g~~~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~ 327 (379)
. .+ +++|+||+|++. +.++ +++++.++++ |+++++|....+ ...+.+...+. +++++.|.+.. +
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~--P- 316 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDL--P- 316 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCCC--c-
Confidence 2 33 379999999996 3464 9999999997 999999985322 23344333343 48888877532 2
Q ss_pred cccHH-HHHHHHHcCCCCCCCcee
Q 016978 328 RSQVP-WLVDKYMKKEIKVDEYVT 350 (379)
Q Consensus 328 ~~~~~-~~~~~~~~~~i~~~~~i~ 350 (379)
..++ +..+++.++.+.+.++++
T Consensus 317 -~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 317 -SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred -hhHHHHHHHHHHhCCccHHHHhc
Confidence 3455 589999998888666654
|
|
| >PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-12 Score=104.03 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=77.0
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC--CHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeecc
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG--NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 315 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g--~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 315 (379)
||++++++|++ .++ ...+++|+|||++| ....+..+++++ ++ |+++.++. ....+... ....
T Consensus 1 LGAd~vidy~~--~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~----~~~~~~~~--~~~~ 64 (127)
T PF13602_consen 1 LGADEVIDYRD--TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG----DLPSFARR--LKGR 64 (127)
T ss_dssp CT-SEEEETTC--SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S----HHHHHHHH--HHCH
T ss_pred CCcCEEecCCC--ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC----cccchhhh--hccc
Confidence 69999999986 565 22349999999999 655557777888 96 99999974 00001000 0111
Q ss_pred EEEeeecCC-Cc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 316 VWKGTAFGG-FK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 316 ~i~~~~~~~-~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
.+....+.. .. ..+.++++++++++|++++. +.++|||+++.+|++.+++++.. |+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~--i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 65 SIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPP--IDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEe--eccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 122222221 01 23459999999999999964 88999999999999999999987 9997
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=84.17 Aligned_cols=167 Identities=21% Similarity=0.305 Sum_probs=101.2
Q ss_pred ccCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhc----CCceEeCCCCCCchHHHHHHHhcCC
Q 016978 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 189 ~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~l----g~~~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.+.+++|++||.+|+|+ |..+.++++..|.. +|++++.+++.++.+++. +.+.+-... .++.+ + .+.++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d~~~-l-~~~~~ 145 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GEIEA-L-PVADN 145 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cchhh-C-CCCCC
Confidence 35688999999999987 98888889888763 799999999998888763 332211000 11110 0 12234
Q ss_pred CccEEEEcC------CCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcccccHHHHHHH
Q 016978 264 GVDYSFECI------GNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDK 337 (379)
Q Consensus 264 g~d~vid~~------g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 337 (379)
.||+|+... .....+..+.+.|+++ |+++..+..... .+ +..+.....+.+..... .....++.++
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~~---~~~~~~~~~~~~~~~~~---~~~~~e~~~~ 217 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-EL---PEEIRNDAELYAGCVAG---ALQEEEYLAM 217 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-CC---CHHHHHhHHHHhccccC---CCCHHHHHHH
Confidence 799998543 2246799999999997 999987664322 11 11111111111111111 1244556666
Q ss_pred HHc-CCCCCCCceeeeeecchHHHHHHHH--hcCC
Q 016978 338 YMK-KEIKVDEYVTHNMTLGEINEAFRYM--HGGD 369 (379)
Q Consensus 338 ~~~-~~i~~~~~i~~~~~~~~i~~A~~~~--~~~~ 369 (379)
+.+ |.........+.++++++.++++.+ .+++
T Consensus 218 l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~ 252 (272)
T PRK11873 218 LAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGR 252 (272)
T ss_pred HHHCCCCceEEEeccceecccHHHHHHHhcccccc
Confidence 665 3333322245668899999999988 4444
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.1e-07 Score=86.11 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCC-----------CchHHHHHHHh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH-----------DKPIQQVLVDL 260 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~-----------~~~~~~~i~~~ 260 (379)
.++++|+|+|+|.+|++++++|+.+|+ +|++++.++++++.++++|++.+ ++..+. ..++.+..++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 467999999999999999999999999 79999999999999999998763 222110 12344333333
Q ss_pred cC---CCccEEEEcC---CCHH---HHHHHHHHhccCCceEEEEccCCC
Q 016978 261 TD---GGVDYSFECI---GNVS---VMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 261 ~~---~g~d~vid~~---g~~~---~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
.. .++|++|+|+ |.+. ..++.++.++++ +.+|+++...+
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G 288 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG 288 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence 33 2799999999 5433 467889999997 99999987543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-06 Score=79.54 Aligned_cols=103 Identities=25% Similarity=0.318 Sum_probs=78.3
Q ss_pred hhhhhhhccCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHh
Q 016978 182 GLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 182 a~~~l~~~~~~~-~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~ 260 (379)
.|.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+. +.+ +.+.+
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~-------l~eal--- 265 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT-------MEEAA--- 265 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC-------HHHHH---
Confidence 355544443444 89999999999999999999999999 899999988887666666754 221 21222
Q ss_pred cCCCccEEEEcCCCHHHHH-HHHHHhccCCceEEEEccCC
Q 016978 261 TDGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 261 ~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~iv~~g~~~ 299 (379)
.++|+||+++|+.+.+. ..+..++++ +.++..|...
T Consensus 266 --~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d 302 (425)
T PRK05476 266 --ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD 302 (425)
T ss_pred --hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence 26899999999988776 678888996 8888888754
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-08 Score=93.68 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=104.6
Q ss_pred ccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCC
Q 016978 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG 145 (379)
Q Consensus 66 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 145 (379)
.-|.|+++.+.+|++++.+ +|++.+.+ ||.|.+| ++.|..... .|.. .++
T Consensus 89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~-l~~---------------- 138 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKV-LER---------------- 138 (417)
T ss_pred cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHH-HHH----------------
Confidence 3588999999999998776 66777777 9999988 455554332 2222 333
Q ss_pred cceeeeeEEecCcceEe---c-CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCe
Q 016978 146 TSTFSQYTVVHDVSVAK---I-DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASR 221 (379)
Q Consensus 146 ~g~~~~~~~v~~~~~~~---i-P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~ 221 (379)
.|++++.++. .+.. | +..++...+| .....+..+..++++|+|+|+|.+|..+++.++..|+.+
T Consensus 139 --lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~ 206 (417)
T TIGR01035 139 --LFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK 206 (417)
T ss_pred --HHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence 8988888765 3332 2 2222222221 110122333467899999999999999999999999668
Q ss_pred EEEEcCChhHH-HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 222 VIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 222 vi~v~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
|++++++.++. ++++++|.. .+.. .+..+.+ .++|+||.|++.+.
T Consensus 207 V~v~~rs~~ra~~la~~~g~~-~i~~----~~l~~~l-----~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 207 ILIANRTYERAEDLAKELGGE-AVKF----EDLEEYL-----AEADIVISSTGAPH 252 (417)
T ss_pred EEEEeCCHHHHHHHHHHcCCe-EeeH----HHHHHHH-----hhCCEEEECCCCCC
Confidence 99999998875 467777763 2222 1222222 25999999988754
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=75.72 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=77.9
Q ss_pred hhhhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc
Q 016978 183 LGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 183 ~~~l~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
+.++.+..+ ..+|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...++..|+. +++ ..+.+
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~-------leeal---- 248 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT-------MEEAA---- 248 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC-------HHHHH----
Confidence 344444434 4689999999999999999999999999 899998888887777777763 221 11222
Q ss_pred CCCccEEEEcCCCHHHHHH-HHHHhccCCceEEEEccCC
Q 016978 262 DGGVDYSFECIGNVSVMRA-ALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~-~~~~l~~~~G~iv~~g~~~ 299 (379)
.+.|++|+++|+...++. .+..++++ +.++.+|-..
T Consensus 249 -~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~~ 285 (406)
T TIGR00936 249 -KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHFD 285 (406)
T ss_pred -hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence 257999999999887875 88888996 8999887653
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=8e-05 Score=67.90 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=92.5
Q ss_pred eeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhcc---CCCCCCEEEEEcC-ChHHHHHHHHHH-HcCCCeE
Q 016978 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRV 222 (379)
Q Consensus 148 ~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~Ga-g~vG~~a~~la~-~~g~~~v 222 (379)
.|-+|.++..+..+.- +....++..-| .+.|+|. |.+.. ..-..+.|||.+| +-.++.++.+++ ..+..++
T Consensus 90 ~YN~Y~r~~~d~~y~~--~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYDP--EREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccCc--chhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 5666777665554411 11112222223 4566665 22221 1234467777877 889999888888 5555599
Q ss_pred EEEcCChhHHHHHHhcCC-ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 223 IGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 223 i~v~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
|++ +|+...++.+++|. +.|+.|++ +..+.....-+++|.+|+..+...+...+....-..+.+|..+.
T Consensus 166 vgl-TS~~N~~Fve~lg~Yd~V~~Yd~--------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~ 235 (314)
T PF11017_consen 166 VGL-TSARNVAFVESLGCYDEVLTYDD--------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHW 235 (314)
T ss_pred EEE-ecCcchhhhhccCCceEEeehhh--------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence 999 66777789999997 55777765 44444446678999999999888888888886456777887543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=70.82 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=83.4
Q ss_pred eeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 148 TFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 148 ~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
+|.+|.. +...++.+++.+++..+..-. +.. .+..+.. ...++++||-+|+|. |.+++.+++ .|+.+|++++.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~~--~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi 150 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALEK--LVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI 150 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHHh--hcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence 4555543 667889999988877654221 111 1111211 256899999999986 887776554 67767999999
Q ss_pred ChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC--CccEEEEcCCCH---HHHHHHHHHhccCCceEEEEccC
Q 016978 228 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG--GVDYSFECIGNV---SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 228 ~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~--g~d~vid~~g~~---~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++...+.+++.....-+. .. . ....+ .||+|+...... ..++.+.+.|+++ |+++..|..
T Consensus 151 s~~~l~~A~~n~~~~~~~-~~--~-------~~~~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~ 215 (250)
T PRK00517 151 DPQAVEAARENAELNGVE-LN--V-------YLPQGDLKADVIVANILANPLLELAPDLARLLKPG-GRLILSGIL 215 (250)
T ss_pred CHHHHHHHHHHHHHcCCC-ce--E-------EEccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECc
Confidence 999888776531110000 00 0 01111 599998655442 4567888889997 999987654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-05 Score=69.78 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=74.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+++|+|+|+|.+|+.+++.++.+|+ +|++++++.++.+.++++|++.+ .. .++ .+.. ..+|+||+|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~----~~l----~~~l-~~aDiVI~t~p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL----SEL----AEEV-GKIDIIFNTIP 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH----HHH----HHHh-CCCCEEEECCC
Confidence 68999999999999999999999999 99999999988888888887532 11 122 2221 25999999987
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
........++.++++ +.++.++....
T Consensus 220 ~~~i~~~~l~~~~~g-~vIIDla~~pg 245 (296)
T PRK08306 220 ALVLTKEVLSKMPPE-ALIIDLASKPG 245 (296)
T ss_pred hhhhhHHHHHcCCCC-cEEEEEccCCC
Confidence 754456777889996 99999987543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=74.92 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=79.8
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCC----CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH-
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKV----EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF- 232 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~----~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~- 232 (379)
...+++|+.+..+.++... +.+.+++++ +.+.. .++++|+|+|+|.+|..+++.++..|+.+|+++++++++.
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 5778889999888887765 566676664 33332 4799999999999999999999998877899999998764
Q ss_pred HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHH
Q 016978 233 DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 277 (379)
Q Consensus 233 ~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~ 277 (379)
++++++|+. +++. .++.+.+ ..+|+||.|++.+..
T Consensus 217 ~la~~~g~~-~~~~----~~~~~~l-----~~aDvVi~at~~~~~ 251 (311)
T cd05213 217 ELAKELGGN-AVPL----DELLELL-----NEADVVISATGAPHY 251 (311)
T ss_pred HHHHHcCCe-EEeH----HHHHHHH-----hcCCEEEECCCCCch
Confidence 777888873 3322 1222222 148999999998664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=74.48 Aligned_cols=101 Identities=25% Similarity=0.318 Sum_probs=78.4
Q ss_pred hhhhhhccCC-CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc
Q 016978 183 LGAVWNTAKV-EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 183 ~~~l~~~~~~-~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
+.++++..++ -.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|... + +..+.+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v-------~leEal~--- 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-L-------TLEDVVS--- 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-c-------cHHHHHh---
Confidence 4444454443 679999999999999999999999999 8999998888776777777642 1 1222221
Q ss_pred CCCccEEEEcCCCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 262 DGGVDYSFECIGNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
..|+++++.|+...+ ...+..++++ +.++.+|-.
T Consensus 309 --~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~ 343 (477)
T PLN02494 309 --EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF 343 (477)
T ss_pred --hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence 489999999987754 8899999996 999999875
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=69.08 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.+ ++........+ ..++.+.+ ..+|+||+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~-~~~l~~~l-----~~aDvVI~a~ 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN-AYEIEDAV-----KRADLLIGAV 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC-HHHHHHHH-----ccCCEEEEcc
Confidence 34569999999999999999999999 89999999888777654 45432222221 12222222 2589999997
Q ss_pred ---CC--HH-HHHHHHHHhccCCceEEEEccCC
Q 016978 273 ---GN--VS-VMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 273 ---g~--~~-~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+. +. .....++.++++ +.++.++...
T Consensus 239 ~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~ 270 (370)
T TIGR00518 239 LIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQ 270 (370)
T ss_pred ccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCC
Confidence 32 22 236777889996 9999998653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=70.15 Aligned_cols=101 Identities=23% Similarity=0.327 Sum_probs=75.9
Q ss_pred hhhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcC
Q 016978 184 GAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 184 ~~l~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.++++..+ .-.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+.. . ++.+.+
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~-~-------~leell----- 307 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV-V-------TLEDVV----- 307 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee-c-------cHHHHH-----
Confidence 34444333 4579999999999999999999999999 8999988877665555566532 1 122222
Q ss_pred CCccEEEEcCCCHHHHH-HHHHHhccCCceEEEEccCC
Q 016978 263 GGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 263 ~g~d~vid~~g~~~~~~-~~~~~l~~~~G~iv~~g~~~ 299 (379)
...|+|+.+.|....+. ..+..++++ +.++.+|-..
T Consensus 308 ~~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~d 344 (476)
T PTZ00075 308 ETADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHFD 344 (476)
T ss_pred hcCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence 25899999999877774 889999997 9999998653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=73.89 Aligned_cols=138 Identities=24% Similarity=0.317 Sum_probs=87.6
Q ss_pred ceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE
Q 016978 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI 225 (379)
Q Consensus 147 g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v 225 (379)
-++++|..+++..++.+ +..+.+++..... ...+..+|++|||+|+ |++|..+++.+...|+ +|+++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~ 452 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLA 452 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEE
Confidence 46677777887777777 5555566542110 0122346899999987 9999999999999999 89999
Q ss_pred cCChhHHHHHH-hcCC--c-e--EeCCCCCCchHHHHHHHhc--CCCccEEEEcCCC-----------------------
Q 016978 226 DIDPKKFDRAK-NFGV--T-E--FVNPKDHDKPIQQVLVDLT--DGGVDYSFECIGN----------------------- 274 (379)
Q Consensus 226 ~~~~~~~~~~~-~lg~--~-~--v~~~~~~~~~~~~~i~~~~--~~g~d~vid~~g~----------------------- 274 (379)
+++.++.+.+. .++. . . ..|..+ ...+.+.+.+.. .+++|++|+++|.
T Consensus 453 ~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd-~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~ 531 (681)
T PRK08324 453 DLDEEAAEAAAAELGGPDRALGVACDVTD-EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT 531 (681)
T ss_pred eCCHHHHHHHHHHHhccCcEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence 99887765543 3433 1 1 123332 122333333321 2479999999982
Q ss_pred --HHHHHHHHHHhcc---CCceEEEEccC
Q 016978 275 --VSVMRAALECCHK---GWGTSVIVGVA 298 (379)
Q Consensus 275 --~~~~~~~~~~l~~---~~G~iv~~g~~ 298 (379)
..+++.++..+++ + |+++.++..
T Consensus 532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~ 559 (681)
T PRK08324 532 GHFLVAREAVRIMKAQGLG-GSIVFIASK 559 (681)
T ss_pred HHHHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence 1234555666655 4 789988764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00019 Score=61.47 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=78.3
Q ss_pred cccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHHhcCCceE-eCC
Q 016978 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRAKNFGVTEF-VNP 246 (379)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~----~~~~~lg~~~v-~~~ 246 (379)
.-.+.-+.+.|. +.+...+++|++||=+|+| .|+.++-+|+..| +|+.+++.++-. +.++.+|...| +..
T Consensus 52 gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 52 GQTISAPHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred CceecCcHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 333333344443 4677889999999999996 6999999999988 899999988743 44556888543 222
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.|. .+.+... .||.|+-+.+-+..-..+++.|+++ |+++.-
T Consensus 127 gDG-------~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~P 168 (209)
T COG2518 127 GDG-------SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIP 168 (209)
T ss_pred CCc-------ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEE
Confidence 221 1123333 8999998877766568889999997 998755
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00023 Score=65.41 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce-EeCCCCCCchHHHHHHHhcCCCcc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~-v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
..++++||-+|+|. |.+++.+++ .|+.+|++++.++...+.+++. +... +.... .+ ......++||
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~~fD 227 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEGKAD 227 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCCCce
Confidence 45789999999987 887777665 5777999999999887777652 2211 10000 01 1112234899
Q ss_pred EEEEcCCCH---HHHHHHHHHhccCCceEEEEccC
Q 016978 267 YSFECIGNV---SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 267 ~vid~~g~~---~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|+...... .++..+.+.|+++ |.++..|..
T Consensus 228 lVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence 998654332 4567788999997 999887653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.6e-05 Score=76.22 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---------------------hhHHHHHHhcCCceEeCCCC-
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---------------------PKKFDRAKNFGVTEFVNPKD- 248 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~---------------------~~~~~~~~~lg~~~v~~~~~- 248 (379)
..++|++|+|+|+|+.|+.+++.++..|+ +|++++.. +.+++.++++|++..++...
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 46789999999999999999999999999 78888742 35677888999887766432
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
.+... +.+ ..++|+||+++|...
T Consensus 212 ~~~~~-~~~----~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 212 EDITL-EQL----EGEFDAVFVAIGAQL 234 (564)
T ss_pred CcCCH-HHH----HhhCCEEEEeeCCCC
Confidence 11111 111 126999999999853
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=70.17 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=95.1
Q ss_pred cccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCc
Q 016978 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGT 146 (379)
Q Consensus 67 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 146 (379)
-|+|+++.+.+|++++.+.-+|+ +.. ||.|.. -+..|..... .|.. .++
T Consensus 92 ~g~ea~~hl~~V~~GldS~V~GE-----~qI-lgQvk~----a~~~a~~~g~---~g~~-l~~----------------- 140 (423)
T PRK00045 92 EGEEAVRHLFRVASGLDSMVLGE-----PQI-LGQVKD----AYALAQEAGT---VGTI-LNR----------------- 140 (423)
T ss_pred CCHHHHHHHHHHHhhhhhhhcCC-----hHH-HHHHHH----HHHHHHHcCC---chHH-HHH-----------------
Confidence 59999999999999887744444 333 444431 1222221111 1111 122
Q ss_pred ceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccC----CCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 016978 147 STFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIVAVFGLGTVGLAVAEGAKAAGASRV 222 (379)
Q Consensus 147 g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~VlI~Gag~vG~~a~~la~~~g~~~v 222 (379)
.|++.+ ++|..+..+.+.. ..+.+.+++++ +.+. -.++++|+|+|+|.+|.++++.++..|+.+|
T Consensus 141 -lf~~a~--------~~~k~v~~~t~i~-~~~~Sv~~~Av-~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V 209 (423)
T PRK00045 141 -LFQKAF--------SVAKRVRTETGIG-AGAVSVASAAV-ELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI 209 (423)
T ss_pred -HHHHHH--------HHHhhHhhhcCCC-CCCcCHHHHHH-HHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence 554443 3344443332222 22445555554 2222 2578999999999999999999999998789
Q ss_pred EEEcCChhHHH-HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 223 IGIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 223 i~v~~~~~~~~-~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
++++++.++.+ +++++|.+ ++.. .+..+.+ .++|+||+|+|.+.
T Consensus 210 ~v~~r~~~ra~~la~~~g~~-~~~~----~~~~~~l-----~~aDvVI~aT~s~~ 254 (423)
T PRK00045 210 TVANRTLERAEELAEEFGGE-AIPL----DELPEAL-----AEADIVISSTGAPH 254 (423)
T ss_pred EEEeCCHHHHHHHHHHcCCc-EeeH----HHHHHHh-----ccCCEEEECCCCCC
Confidence 99999988754 77777753 3322 1221111 26899999998754
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=60.70 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|++|+|+|.|.+|..++..++.+|+ +|+++++++++.+.+.++|... +.. .++.+.+ ..+|+|+++++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~----~~l~~~l-----~~aDiVint~P 218 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL----NKLEEKV-----AEIDIVINTIP 218 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH----HHHHHHh-----ccCCEEEECCC
Confidence 57999999999999999999999999 8999999988877777777532 111 1222221 25899999987
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCC
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
..-.-...+..++++ ..++.++...
T Consensus 219 ~~ii~~~~l~~~k~~-aliIDlas~P 243 (287)
T TIGR02853 219 ALVLTADVLSKLPKH-AVIIDLASKP 243 (287)
T ss_pred hHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence 643235567778885 8888887643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00059 Score=59.58 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=59.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCC----ceEeCCCCCCchHHHHHHHhcCC--Cc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV----TEFVNPKDHDKPIQQVLVDLTDG--GV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~----~~v~~~~~~~~~~~~~i~~~~~~--g~ 265 (379)
.++.++|+|| +++|.+.++.+...|+ +|+.+.+.+++++.+. +++. ...+|..+ ..+....+...... .+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD-~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD-RAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC-HHHHHHHHHHHHHhhCcc
Confidence 4588999999 9999999999999999 9999999999887655 5773 22345444 23444455544444 69
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++.+|-
T Consensus 83 DiLvNNAGl 91 (246)
T COG4221 83 DILVNNAGL 91 (246)
T ss_pred cEEEecCCC
Confidence 999998885
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=55.37 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=53.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCc--eEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~--~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.+.+|||+|+|+.|.+++..+...|+++|+.+.++.+|.+.+. .++.. .++.+++ +.+.+ ..+|+||+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~----~~~~~-----~~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED----LEEAL-----QEADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG----HCHHH-----HTESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH----HHHHH-----hhCCeEEE
Confidence 5899999999999999999999999988999999988866554 45322 2333332 22111 15999999
Q ss_pred cCCCHH
Q 016978 271 CIGNVS 276 (379)
Q Consensus 271 ~~g~~~ 276 (379)
|++.+.
T Consensus 82 aT~~~~ 87 (135)
T PF01488_consen 82 ATPSGM 87 (135)
T ss_dssp -SSTTS
T ss_pred ecCCCC
Confidence 988753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.001 Score=56.32 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC---ceEeCCCCC--CchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV---TEFVNPKDH--DKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~---~~v~~~~~~--~~~~~~~i~~~~~~g~d~ 267 (379)
-|.+|||+|. +++|+..++-...+|- +||.+.+++++++-+++.-. ..+.|..+. ...+.+.+.+..+ ..++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNv 81 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNV 81 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chhe
Confidence 3789999965 9999999999999998 99999999999998876433 224444431 1235555555433 5899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+++++|-
T Consensus 82 liNNAGI 88 (245)
T COG3967 82 LINNAGI 88 (245)
T ss_pred eeecccc
Confidence 9998875
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=58.12 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=54.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEEEEc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~vid~ 271 (379)
+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ...+.+.+.... .+++|++|++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~vi~~ 79 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND-GAALARLAEELEAEHGGLDVLINN 79 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEEEC
Confidence 47899988 9999999999999999 89999898887777666665433 34433 133333333332 2379999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
+|.
T Consensus 80 ag~ 82 (274)
T PRK05693 80 AGY 82 (274)
T ss_pred CCC
Confidence 883
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=54.61 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-EeCCCC--CCchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-FVNPKD--HDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga--g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v~~~~~--~~~~~~~~i~~~~~~g~d~ 267 (379)
..+.|||+|. |++|.+++.-...-|+ .|+++.+.-+++..+. ++|... -+|..+ +-..+..+++..++|+.|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~ 84 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL 84 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence 4578999965 9999999999999999 9999999998887666 677532 233322 1234555677777889999
Q ss_pred EEEcCCCHH----------H--------------H--HHHHHHhccCCceEEEEccCC
Q 016978 268 SFECIGNVS----------V--------------M--RAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 268 vid~~g~~~----------~--------------~--~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.++.+|.+. . + .....+++.. |+||.+|...
T Consensus 85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~ 141 (289)
T KOG1209|consen 85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLA 141 (289)
T ss_pred EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEeccee
Confidence 999777521 1 1 1223456775 9999988654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0033 Score=54.31 Aligned_cols=102 Identities=25% Similarity=0.418 Sum_probs=70.4
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH----hcC-CceEeCCCCCCchHHHHHHHhc
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFG-VTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~----~lg-~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
....+.++++||-+|+|. |.+++.+++.++. .+|++++.+++..+.++ .+| .+.+.... .+..+.+...
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~~- 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFTI- 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhhc-
Confidence 456788999999999987 9999999988753 48999999998877664 355 22221111 1222222222
Q ss_pred CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEE
Q 016978 262 DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.+|.||...+. ...+..+.+.|+++ |+++..
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID 144 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence 2379999985443 45688888999997 998853
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0041 Score=55.06 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=66.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc---CCceEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---GVTEFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l---g~~~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
++++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +++ +..+.+ |..+ .....+.+.+.. .++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS-TESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4789999988 9999999999999999 899999988876554 222 222222 2222 122333333221 136
Q ss_pred ccEEEEcCCCH-----------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 265 VDYSFECIGNV-----------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 265 ~d~vid~~g~~-----------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|.++.+.+.. ..++..+..++++ |+++.++..
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~ 137 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSM 137 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecc
Confidence 89999888741 1244555666775 899988764
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0017 Score=62.09 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=75.4
Q ss_pred cchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHH
Q 016978 178 GVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 257 (379)
Q Consensus 178 ~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i 257 (379)
+-.+.+..+.+..++++|++||-+|+| .|.++..+++..|+ +|++++.+++..+.+++.....-+.... .++
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~--~D~---- 222 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL--QDY---- 222 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE--Cch----
Confidence 334445556677888999999999985 67778888988898 8999999999999888754321111110 122
Q ss_pred HHhcCCCccEEEEc-----CCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 258 VDLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 258 ~~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
... .+.+|.|+.. +|. ...++.+.+.|+++ |.++...
T Consensus 223 ~~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~ 267 (383)
T PRK11705 223 RDL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT 267 (383)
T ss_pred hhc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 111 3479988743 233 35688899999997 9998754
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0029 Score=58.75 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=71.6
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH----hcCCceEeCCCCCCchHHHHHHHhc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
.+...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++ +.|.+.+.... .+..+....
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~~~~-- 146 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYGVPE-- 146 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhcccc--
Confidence 455678899999999997 59999999998874 36999999998766554 35665432221 122111111
Q ss_pred CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 262 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.+|+|+.+.+........++.++++ |+++..
T Consensus 147 ~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence 136999999888766667788899997 998763
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=57.31 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHH---hcCCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVD---LTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~---~~~~g~d~v 268 (379)
.+++|||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+.+...+ .|..+ ..++...+.+ ...+.+|++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~~g~id~l 80 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE-PESIAALVAQVLELSGGRLDAL 80 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC-HHHHHHHHHHHHHHcCCCccEE
Confidence 4678999998 9999999999888999 89999999888877776665433 24333 1223333332 233479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 81 i~~Ag~ 86 (277)
T PRK05993 81 FNNGAY 86 (277)
T ss_pred EECCCc
Confidence 998763
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0053 Score=51.55 Aligned_cols=104 Identities=27% Similarity=0.336 Sum_probs=70.8
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEeCCCCCCchHHHHHHHhcC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+.+.++++|+.++=+|+| .|-.+++++...-..+||++++++++.++.+ ++|.+.+.... .+..+.+..+.
T Consensus 27 ls~L~~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~---g~Ap~~L~~~~- 101 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE---GDAPEALPDLP- 101 (187)
T ss_pred HHhhCCCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe---ccchHhhcCCC-
Confidence 355678999988878885 3666778885444559999999999887665 57876432221 12223333221
Q ss_pred CCccEEEEcCCC--HHHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vid~~g~--~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+|.+|---|. ...++.++..|+++ |++|.-..
T Consensus 102 -~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nai 136 (187)
T COG2242 102 -SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAI 136 (187)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEee
Confidence 59999964333 46788999999997 99986644
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0042 Score=55.64 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=56.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c----CCce-E--eCCCCCCchHHHHHHHhcCC
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GVTE-F--VNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l----g~~~-v--~~~~~~~~~~~~~i~~~~~~ 263 (379)
..+.++||+|| +++|...+..+...|+ +++.+.|+++|++.+.+ + |... + .|..+ +.+......++...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~-~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD-PEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC-hhHHHHHHHHHHhc
Confidence 46789999999 9999999999999999 99999999999876643 2 2222 2 23333 22333333333222
Q ss_pred --CccEEEEcCCC
Q 016978 264 --GVDYSFECIGN 274 (379)
Q Consensus 264 --g~d~vid~~g~ 274 (379)
.+|++++++|-
T Consensus 82 ~~~IdvLVNNAG~ 94 (265)
T COG0300 82 GGPIDVLVNNAGF 94 (265)
T ss_pred CCcccEEEECCCc
Confidence 79999999986
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0073 Score=51.67 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=62.7
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEE
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYS 268 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~v 268 (379)
..+++|++||.+|+|+-+.......+..+..+|++++.++.+ ...++. ++..+-......+.+.+..+. ++|+|
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~-~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVD-FIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCce-EEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 456899999999997655544444444344489999998764 112333 222111113334445554444 89999
Q ss_pred EE-cC----CC------------HHHHHHHHHHhccCCceEEEEc
Q 016978 269 FE-CI----GN------------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 269 id-~~----g~------------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+. .. |. ..++..+.++|+++ |+++...
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence 94 22 21 35678889999997 9998753
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=56.99 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=55.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
+++++||+|+ |.+|..+++.+...|+ +|+++++++++++.+.+.+...+ .|..+ ..++...+.+.. .+++|++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD-EASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC-HHHHHHHHHHHHHhcCCCCEEE
Confidence 4679999998 9999999999988999 89999898887766555554332 23333 133333343322 23799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 80 ~~ag~ 84 (273)
T PRK06182 80 NNAGY 84 (273)
T ss_pred ECCCc
Confidence 99874
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0071 Score=51.24 Aligned_cols=93 Identities=25% Similarity=0.311 Sum_probs=63.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCCC-
Q 016978 198 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN- 274 (379)
Q Consensus 198 VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g~- 274 (379)
|+|+|+ |.+|..+++.+...|. +|+++.+++++.+. ..+.+.+. +..+ . +.+.+... ++|.||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~~d~~d--~---~~~~~al~-~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQGDLFD--P---DSVKAALK-GADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEESCTTC--H---HHHHHHHT-TSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccceeeehh--h---hhhhhhhh-hcchhhhhhhhh
Confidence 789998 9999999999999998 99999999998776 44444332 2222 2 22333222 69999999985
Q ss_pred ---HHHHHHHHHHhccC-CceEEEEccCC
Q 016978 275 ---VSVMRAALECCHKG-WGTSVIVGVAA 299 (379)
Q Consensus 275 ---~~~~~~~~~~l~~~-~G~iv~~g~~~ 299 (379)
.+.....++.++.. -.+++.++...
T Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 72 PKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp TTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccccceeeeccc
Confidence 34455666665543 13677776543
|
... |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=54.94 Aligned_cols=105 Identities=22% Similarity=0.342 Sum_probs=67.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee----CCCCCCchHHHHHHH--hc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV----NPKDHDKPIQQVLVD--LT 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~----~~~~~~~~~~~~i~~--~~ 261 (379)
.|+.|+|+|| +++|.+.+--.-..|+ +++.+.+..++++.+ ++.++.. ++ |-.+ ..+....+.+ ..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~-~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD-EESVKKFVEWAIRH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC-HHHHHHHHHHHHHh
Confidence 4789999999 9999988888888899 677766777666555 4455444 22 2222 1223323322 12
Q ss_pred CCCccEEEEcCCCH-------------------------HHHHHHHHHhccCC-ceEEEEccCCC
Q 016978 262 DGGVDYSFECIGNV-------------------------SVMRAALECCHKGW-GTSVIVGVAAS 300 (379)
Q Consensus 262 ~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~-G~iv~~g~~~~ 300 (379)
.|++|++++.+|-. .....++..|++.+ |+||.++...+
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG 153 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG 153 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence 35899999987751 22456666666644 89999987654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0047 Score=52.37 Aligned_cols=89 Identities=31% Similarity=0.392 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
--.|++|.|+|.|.+|...+++++.+|+ +|++.+++....+...+.+... .++.+.+.+ .|+|+.+
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~--------~~l~ell~~-----aDiv~~~ 98 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY--------VSLDELLAQ-----ADIVSLH 98 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE--------SSHHHHHHH------SEEEE-
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee--------eehhhhcch-----hhhhhhh
Confidence 3468999999999999999999999999 9999999888766445555421 223333333 7888876
Q ss_pred CCCH----H-HHHHHHHHhccCCceEEEE
Q 016978 272 IGNV----S-VMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 272 ~g~~----~-~~~~~~~~l~~~~G~iv~~ 295 (379)
.... . .=...+..++++ ..+|.+
T Consensus 99 ~plt~~T~~li~~~~l~~mk~g-a~lvN~ 126 (178)
T PF02826_consen 99 LPLTPETRGLINAEFLAKMKPG-AVLVNV 126 (178)
T ss_dssp SSSSTTTTTSBSHHHHHTSTTT-EEEEES
T ss_pred hccccccceeeeeeeeeccccc-eEEEec
Confidence 6531 1 124556677775 666655
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=52.17 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCC---ceEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV---TEFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~---~~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
++.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++.. -+.+ |..+ ..++.+.+.+.. .++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD-EADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 4689999988 9999999988888899 799998887765443 33321 1222 2222 233444444332 137
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|++.|.
T Consensus 83 ~d~vi~~ag~ 92 (237)
T PRK07326 83 LDVLIANAGV 92 (237)
T ss_pred CCEEEECCCC
Confidence 9999998764
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.005 Score=49.10 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.++.+|+++|.| .|...++.+..+|. .|++++.+++..+.+++.+.+.+.+.-- ..+. ++ .+++|+++.+-
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf-~p~~-----~~-y~~a~liysir 85 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF-NPNL-----EI-YKNAKLIYSIR 85 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC-CCCH-----HH-HhcCCEEEEeC
Confidence 456889999999 88755666667899 9999999999999999988766543211 1111 11 13799999998
Q ss_pred CCHHHHHHHHHHhccCCceEEEE
Q 016978 273 GNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
..++..+.+++..++-+..++..
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 88887777777766642333333
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=50.26 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHH-HHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD-RAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~-~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
++++|||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+ +..+++...+ .|..+ ...+.+.+.+ .+++|++|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~-~~~~~~~~~~--~~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD-RDAVIDVVRK--SGALDILV 80 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC-HHHHHHHHHH--hCCCcEEE
Confidence 4789999988 9999999999999999 7776644 444443 3344555432 23322 1223333332 23699999
Q ss_pred EcCCCH----------H---------------HHHHHHHHhccCCceEEEEccCC
Q 016978 270 ECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 270 d~~g~~----------~---------------~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+++|.. + +...++..+... |+++.++...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~ 134 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSVN 134 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEeccc
Confidence 998741 0 113444455665 8999887643
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.058 Score=47.48 Aligned_cols=98 Identities=22% Similarity=0.217 Sum_probs=64.1
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
....++++++||-.|+|. |.+++.+++. ++.+|++++.+++..+.+++ .+....+... ++.+. ...+
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~----d~~~~---~~~~ 100 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG----DWARA---VEFR 100 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC----chhhh---ccCC
Confidence 344577899999999986 8888888875 65589999999987776553 3433222221 22221 1224
Q ss_pred CccEEEEcCCC---------------------------HHHHHHHHHHhccCCceEEEE
Q 016978 264 GVDYSFECIGN---------------------------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 g~d~vid~~g~---------------------------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.||+|+...+. ...+..+.+.|+++ |+++.+
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~ 158 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLV 158 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence 79998863110 12456778889996 998865
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0077 Score=53.96 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=54.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchH---HHHHHHhcCCCccEEEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPI---QQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~---~~~i~~~~~~g~d~vid 270 (379)
++|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+++.++..+ .|..+ ...+ .+.+.....+.+|.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~~~~~ii~ 80 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD-PESVERAADEVIALTDNRLYGLFN 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC-HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 57999998 9999999999999999 89999999988887777776543 23322 1222 22333333357899998
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
+.|.
T Consensus 81 ~ag~ 84 (256)
T PRK08017 81 NAGF 84 (256)
T ss_pred CCCC
Confidence 8763
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0053 Score=57.56 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHh--cCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDL--TDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~--~~~ 263 (379)
++++|||+|+ |++|.++++.+...|+ +|+.+++++++++.+ ++.|.+.. .|..+ ..+..+.+.+. ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhcC
Confidence 5789999998 9999999999999999 899998988876533 34565432 23332 12222222221 124
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 79999999884
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.017 Score=54.71 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=66.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC---Cc-eEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---VT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg---~~-~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.+|||+|+|.+|..+++.+.+.|-.+|++.+++.++.+.+.... .. ..+|..+ .....+.++ ++|+||++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-~~al~~li~-----~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-VDALVALIK-----DFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-hHHHHHHHh-----cCCEEEEe
Confidence 57999999999999999999888459999999999888887653 22 2445443 123333332 35999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+.......+-.|++.+ =.++.....
T Consensus 76 ~p~~~~~~i~ka~i~~g-v~yvDts~~ 101 (389)
T COG1748 76 APPFVDLTILKACIKTG-VDYVDTSYY 101 (389)
T ss_pred CCchhhHHHHHHHHHhC-CCEEEcccC
Confidence 99866555444555553 455555443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0063 Score=47.82 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=67.5
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~ 260 (379)
.....+.++++||-+|+|. |..+..+++..+..+|++++.++...+.+++ ++... ++..+. .. ... .
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~---~~~-~ 84 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PE---ALE-D 84 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cc---cCh-h
Confidence 3444567788999999976 8888899988764589999999988777653 34332 222111 10 011 1
Q ss_pred cCCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEE
Q 016978 261 TDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 261 ~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
..+.+|+|+-..+. ..+++.+.+.|+++ |+++..
T Consensus 85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~ 121 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN 121 (124)
T ss_pred hcCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence 12379999875433 34788999999997 998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=48.74 Aligned_cols=92 Identities=26% Similarity=0.362 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++++|.|-|.+|.-.++.++.+|+ +|++++.++-+.-.+..-|.. +. ...+.+ ...|+++-+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~-------~~~~a~-----~~adi~vta 85 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM-------TLEEAL-----RDADIFVTA 85 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE--------HHHHT-----TT-SEEEE-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec-------CHHHHH-----hhCCEEEEC
Confidence 4579999999999999999999999999 999999999876666655653 21 122221 258999999
Q ss_pred CCCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 272 IGNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 272 ~g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|..+.+ .+-+..|+++ ..+...|-.
T Consensus 86 TG~~~vi~~e~~~~mkdg-ail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNKDVITGEHFRQMKDG-AILANAGHF 112 (162)
T ss_dssp SSSSSSB-HHHHHHS-TT-EEEEESSSS
T ss_pred CCCccccCHHHHHHhcCC-eEEeccCcC
Confidence 9986643 5677888885 555555543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.014 Score=50.68 Aligned_cols=104 Identities=22% Similarity=0.237 Sum_probs=73.1
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCCC
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~g 264 (379)
++.+..++||=+|.+ +|+.++++|..+. -.+++.++.++++.+.+++ .|.+..+.--. ..+..+.+.+...+.
T Consensus 55 ~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~-~gdal~~l~~~~~~~ 132 (219)
T COG4122 55 ARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL-GGDALDVLSRLLDGS 132 (219)
T ss_pred HHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe-cCcHHHHHHhccCCC
Confidence 445577899988874 6888999999887 3489999999999887764 56655211111 024556666644558
Q ss_pred ccEEE-EcC--CCHHHHHHHHHHhccCCceEEEEc
Q 016978 265 VDYSF-ECI--GNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 265 ~d~vi-d~~--g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
||+|| |+. -.+..++.++.+|+++ |.++.=.
T Consensus 133 fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DN 166 (219)
T COG4122 133 FDLVFIDADKADYPEYLERALPLLRPG-GLIVADN 166 (219)
T ss_pred ccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEee
Confidence 99998 432 2367899999999996 8777443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0025 Score=55.34 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=66.7
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHH----HhcCCceE-eCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRA----KNFGVTEF-VNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~----~~lg~~~v-~~~~~~~~~~~~~i~~ 259 (379)
+++...++||++||-+|+| .|+.++-+++..|.. +|+.++..++-.+.+ +.++.+.+ +...+ . ...
T Consensus 64 ~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd--g-----~~g 135 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD--G-----SEG 135 (209)
T ss_dssp HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---G-----GGT
T ss_pred HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc--h-----hhc
Confidence 4566779999999999986 588999999988853 699999888655444 34566432 22222 1 011
Q ss_pred hcC-CCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 260 LTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 260 ~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
... ++||.|+-+.+-+..-...++.|+++ |++|..
T Consensus 136 ~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred cccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence 122 38999998877766667888999997 999863
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=56.14 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=51.2
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hH-HHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KK-FDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~-~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.+|+++||+|+ |++|..+++.+...|+ +|+++++.+ ++ .+...+++...+ .|..+ .......+.... .+++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA-PDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhCCCC
Confidence 36889999988 9999999999999999 888887643 22 233344554332 34333 122222222222 2379
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++|+++|.
T Consensus 286 d~vi~~AG~ 294 (450)
T PRK08261 286 DIVVHNAGI 294 (450)
T ss_pred CEEEECCCc
Confidence 999999883
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=45.07 Aligned_cols=92 Identities=26% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHhcC----C-ce-EeCCCCCCchHHHHHHHhcCCCcc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAKNFG----V-TE-FVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~~~lg----~-~~-v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
||++||-+|+|. |..++.+++. .++ +|++++.+++-.+.+++.- . +. -+...+ + . ......+++|
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d----~-~-~~~~~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGD----A-E-FDPDFLEPFD 72 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC----C-H-GGTTTSSCEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc----c-c-cCcccCCCCC
Confidence 689999999863 7777888884 567 8999999999888877532 1 11 121222 2 1 1111122799
Q ss_pred EEEEcC-CC---------HHHHHHHHHHhccCCceEEE
Q 016978 267 YSFECI-GN---------VSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 267 ~vid~~-g~---------~~~~~~~~~~l~~~~G~iv~ 294 (379)
+|+... .. ...++.+.+.|+++ |+++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi 109 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI 109 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence 999876 22 12478899999996 99875
|
... |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.011 Score=51.96 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=52.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE--eCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v--~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
++|+|+|+ |.+|...+..+...|+ +|+++++++++.+.+++++...+ .|..+ ...+.+.+.....+++|++|.++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND-PASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC-HHHHHHHHHHhhcCCCCEEEEcC
Confidence 57899988 9999999888888999 89999988877665555433222 23222 12333444444334799999887
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
|.
T Consensus 80 g~ 81 (225)
T PRK08177 80 GI 81 (225)
T ss_pred cc
Confidence 54
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.018 Score=50.29 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=68.6
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~ 258 (379)
+.+...+++|++||-+|+| .|..+..+++..+. .+|++++.+++-.+.+++ .|... ++..+. ...+
T Consensus 68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-~~~~----- 140 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-TLGY----- 140 (212)
T ss_pred HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-ccCC-----
Confidence 4566678999999999886 47777888888763 389999999887766654 44432 222221 0000
Q ss_pred HhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.||.|+-...........++.|+++ |+++..
T Consensus 141 -~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~ 175 (212)
T PRK13942 141 -EENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP 175 (212)
T ss_pred -CcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence 11237999876555556677888999997 998764
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.024 Score=50.50 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=61.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-HHHH----HHhcCCce-E--eCCCCCCchHHHHHHHhcC--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFDR----AKNFGVTE-F--VNPKDHDKPIQQVLVDLTD-- 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-~~~~----~~~lg~~~-v--~~~~~~~~~~~~~i~~~~~-- 262 (379)
+++++||+|+ |.+|..++..+...|+ +|+++.++.+ +.+. ++..+... . .|..+ ..+....+.+...
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD-EESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence 4689999998 9999999998888999 7888777543 3222 22233321 1 23332 1233333333221
Q ss_pred CCccEEEEcCCCH-------------------HHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSFECIGNV-------------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+++|+++.++|.. ..++.+...+..+ |+++.++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence 3689999887642 2345555555664 88888865
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0056 Score=51.38 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC-CCCC--------------CchHHHHHHH
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-PKDH--------------DKPIQQVLVD 259 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~-~~~~--------------~~~~~~~i~~ 259 (379)
..+|+|+|+|.+|+.|+.+++.+|+ +++..+...++.+..+..+...+.. +.+. .......+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 3889999999999999999999999 8999999999888888887755432 1110 1223333333
Q ss_pred hcCCCccEEEEcCC-----CHHH-HHHHHHHhccCCceEEEEccC
Q 016978 260 LTDGGVDYSFECIG-----NVSV-MRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 260 ~~~~g~d~vid~~g-----~~~~-~~~~~~~l~~~~G~iv~~g~~ 298 (379)
... .+|+||-+.- .+.+ -++.++.|+++ ..++++...
T Consensus 99 ~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D 141 (168)
T PF01262_consen 99 FIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD 141 (168)
T ss_dssp HHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred HHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence 221 4788885321 1222 36677788885 888888653
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=52.99 Aligned_cols=79 Identities=28% Similarity=0.388 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+|++|||+|+ |.+|..+++.+...|+ +|+++++++.+.+.. .+++...+ .|..+ ...+...+.+.. .+++|++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 83 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD-EDAVNALFDTAAETYGSVDIA 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 5789999998 9999999999999999 899998887765443 34444222 23332 122222333221 1368999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
+.++|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06057 84 FNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.03 Score=50.60 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.. .+.+... + .|..+ ..++...+.+.. .+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999999999 899998887654322 2223222 1 23322 133333343332 23
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++|.++|
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899998876
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.024 Score=53.24 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++.|.... .|..+ ..+....+.... .+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHHCC
Confidence 4689999988 9999999999999999 899988888765533 33454332 23333 122333332221 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.037 Score=55.07 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=39.4
Q ss_pred hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 016978 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~ 235 (379)
...+.+.|++|||+|+ |.+|..+++.+...|+ +|+++.++.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4456678999999998 9999999999989999 899988988876543
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.029 Score=50.36 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh---cCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~---lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+|.++||+|+ |.+|...++.+...|+ +|+.+++++++.+..++ .+... . .|..+ ...+...+.+.. .++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 83 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVAKFGR 83 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcCC
Confidence 4789999988 9999999888888999 78888787776544433 33322 1 22222 122333333322 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|.++|.
T Consensus 84 id~vi~~ag~ 93 (258)
T PRK08628 84 IDGLVNNAGV 93 (258)
T ss_pred CCEEEECCcc
Confidence 9999999883
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=51.69 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+. ..+...+ .|..+ .....+.+.. .+++|++|+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~--~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD-DAAIRAALAA--AGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC-HHHHHHHHHH--hCCCCEEEE
Confidence 4689999998 9999999999999999 8999988887665443 3444332 23332 1222222222 237999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
+.|.
T Consensus 84 ~ag~ 87 (245)
T PRK07060 84 CAGI 87 (245)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.029 Score=50.59 Aligned_cols=79 Identities=30% Similarity=0.387 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++... + .|..+ ..++.+.+.+.. .+.+|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD-DAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4689999988 9999999999999999 899998887755433 4444322 2 23332 123333333321 23689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=52.91 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=63.2
Q ss_pred hhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce--EeCCCCCCchHHHHHH
Q 016978 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 185 ~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~--v~~~~~~~~~~~~~i~ 258 (379)
.+.+++++++|++||-+|+| -|-.+..+|+..|+ +|+++..+++..+.++ +.|... .+...+ + +
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D----~----~ 122 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQD----Y----R 122 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-----G----G
T ss_pred HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee----c----c
Confidence 35788899999999999987 56777788888899 9999999999887765 455421 111111 1 1
Q ss_pred HhcCCCccEEEEc-----CCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++. +.||.|+.. .|. +..+..+.+.|+|+ |++++-..
T Consensus 123 ~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i 167 (273)
T PF02353_consen 123 DLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTI 167 (273)
T ss_dssp G----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEE
T ss_pred ccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEec
Confidence 221 278987753 332 46689999999997 99885543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=50.55 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=67.5
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHH----hcCCc---eEeCCCCCCchHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAK----NFGVT---EFVNPKDHDKPIQQVL 257 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~----~lg~~---~v~~~~~~~~~~~~~i 257 (379)
+.+...++++++||-+|+| .|..++.+++..+ ..+|++++.+++-.+.++ ..+.. .++..+. .+.+
T Consensus 64 ~~~~l~~~~~~~VLDiG~G-sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-----~~~~ 137 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTG-SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-----KRGL 137 (205)
T ss_pred HHHhcCCCCCCEEEEECcC-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc-----ccCC
Confidence 3466678899999999886 4777788888775 238999999988666554 34432 2222221 1111
Q ss_pred HHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 258 VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
. ..+.||.|+-+.........+++.|+++ |+++..
T Consensus 138 ~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~ 172 (205)
T PRK13944 138 E--KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP 172 (205)
T ss_pred c--cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence 0 1237999887666556667888999997 998764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0093 Score=54.60 Aligned_cols=126 Identities=27% Similarity=0.381 Sum_probs=69.4
Q ss_pred cCcceEecCCCCCccccccccccchhhhhh-hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 016978 156 HDVSVAKIDPQAPLDKVCLLGCGVPTGLGA-VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (379)
Q Consensus 156 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~ 234 (379)
+.+.++.|.+.+.+-... ..+|.... ++.. -..+|++||=+|+| .|.+++..+ .+|+++|++++.++...+.
T Consensus 127 ~~~~~I~idPg~AFGTG~----H~TT~lcl~~l~~-~~~~g~~vLDvG~G-SGILaiaA~-klGA~~v~a~DiDp~Av~~ 199 (295)
T PF06325_consen 127 PDEIVIEIDPGMAFGTGH----HPTTRLCLELLEK-YVKPGKRVLDVGCG-SGILAIAAA-KLGAKKVVAIDIDPLAVEA 199 (295)
T ss_dssp TTSEEEEESTTSSS-SSH----CHHHHHHHHHHHH-HSSTTSEEEEES-T-TSHHHHHHH-HTTBSEEEEEESSCHHHHH
T ss_pred CCcEEEEECCCCcccCCC----CHHHHHHHHHHHH-hccCCCEEEEeCCc-HHHHHHHHH-HcCCCeEEEecCCHHHHHH
Confidence 345566676665443332 22222211 1121 26789999998874 244444333 4599899999998876555
Q ss_pred HHh----cCCce-E-eCCCCCCchHHHHHHHhcCCCccEEEEcCCCH---HHHHHHHHHhccCCceEEEEccCC
Q 016978 235 AKN----FGVTE-F-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV---SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 235 ~~~----lg~~~-v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+++ .|... + +.... + ...+.||+|+--+-.. ..++.+.+.++++ |.+++.|...
T Consensus 200 a~~N~~~N~~~~~~~v~~~~---~-------~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGIl~ 262 (295)
T PF06325_consen 200 ARENAELNGVEDRIEVSLSE---D-------LVEGKFDLVVANILADVLLELAPDIASLLKPG-GYLILSGILE 262 (295)
T ss_dssp HHHHHHHTT-TTCEEESCTS---C-------TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEEEG
T ss_pred HHHHHHHcCCCeeEEEEEec---c-------cccccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccccH
Confidence 543 23222 1 21111 1 1125899999655443 3455666779996 9999988764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=53.28 Aligned_cols=82 Identities=26% Similarity=0.232 Sum_probs=53.5
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC-c--eE--eCCCCCCchHHHHHHHhc--C
Q 016978 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-T--EF--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 191 ~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~-~--~v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
..-++.++||+|+ |.+|..++..+...|+ +|+.++++++..+.+.+... . .+ .|..+ ...+.+.+.+.. .
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD-PAQVERVFDTAVERF 84 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 3457899999988 9999999999999999 79999888776555443221 1 12 22222 122222222221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|+||+++|.
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 379999998875
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=51.47 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=49.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH-H---HHhcCCceE-eCCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-R---AKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~---~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
+++++||+|+ |.+|..+++.+...|+ +|+++++++++.+ . +...+...+ .|..+ ..++...+.+.. .+++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD-PQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC-HHHHHHHHHHHHHHhCCc
Confidence 4789999988 9999999998888899 7999988765532 2 222333222 22222 122323233221 2379
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|+|++++|.
T Consensus 84 d~vi~~ag~ 92 (239)
T PRK12828 84 DALVNIAGA 92 (239)
T ss_pred CEEEECCcc
Confidence 999998774
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=56.18 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-.+.+|||+|+|.+|.+++.-+...|+.+++++.++.+|.+.+ .+++...++.++ .+.+.. ..+|+||.|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~--------~l~~~l-~~aDiVI~a 249 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS--------ELPQLI-KKADIIIAA 249 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH--------HHHHHh-ccCCEEEEC
Confidence 4678999999999999999999999987899999998775444 445422222221 122221 258999999
Q ss_pred CCCHHHH
Q 016978 272 IGNVSVM 278 (379)
Q Consensus 272 ~g~~~~~ 278 (379)
++.++.+
T Consensus 250 T~a~~~v 256 (414)
T PRK13940 250 VNVLEYI 256 (414)
T ss_pred cCCCCee
Confidence 9986543
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=53.41 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CCce-E--eCCCCCCchHHHHHHHhcC--CCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~~~-v--~~~~~~~~~~~~~i~~~~~--~g~d 266 (379)
+++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.+. +... . .|..+ ..+..+.+.+... +.+|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 81 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFGKID 81 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 4789999988 9999999999999999 899998888776655543 3221 1 22222 1223333333221 3689
Q ss_pred EEEEcCC
Q 016978 267 YSFECIG 273 (379)
Q Consensus 267 ~vid~~g 273 (379)
++++++|
T Consensus 82 ~li~~Ag 88 (262)
T TIGR03325 82 CLIPNAG 88 (262)
T ss_pred EEEECCC
Confidence 9999876
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=49.98 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=52.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.++..+... ..|..+ ...+.+.+.+...+++|+++.+.|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD-PASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC-HHHHHHHHHHhcCCCCCEEEECCC
Confidence 47899987 9999998888878899 8999988888777666665432 223333 133333333333337999999876
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 80 ~ 80 (222)
T PRK06953 80 V 80 (222)
T ss_pred c
Confidence 5
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.016 Score=51.94 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=53.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-eEe--CCCCCCchHHHHHHHhc--C
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
..+++|||+|+ |.+|..++..+...|+ +|+++.+++++.+.+.+ .+.. .++ |..+ ..++.+.+.+.. .
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD-YQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhc
Confidence 45799999988 9999999999999999 89999888877654432 1221 222 2222 133333333321 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++|++.|.
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 378999999883
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.016 Score=51.89 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
++++|||+|+ |.+|...++.+...|+ +|+.++++++..+...++.... . .|..+ ...+...+.+.. .+++|
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~d 91 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD-SQSVEAAVAAVISAFGRID 91 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4789999998 9999999998888999 8999988877655554432221 2 22222 122333333221 13789
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+++.++|.
T Consensus 92 ~vi~~ag~ 99 (255)
T PRK06841 92 ILVNSAGV 99 (255)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=53.24 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCce----EeCCCCCCchHHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTE----FVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~----v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.|+++||+|+ +++|...+..+...|+ +|+.+++++++++.+.+ .+... ..|..+...+..+.+.+...+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 4899999998 9999998888888899 89999999887654422 11111 223322112334444444444
Q ss_pred -CccEEEEcCCC
Q 016978 264 -GVDYSFECIGN 274 (379)
Q Consensus 264 -g~d~vid~~g~ 274 (379)
.+|++++++|.
T Consensus 131 ~didilVnnAG~ 142 (320)
T PLN02780 131 LDVGVLINNVGV 142 (320)
T ss_pred CCccEEEEecCc
Confidence 57799988763
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.019 Score=52.97 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=53.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCC--ceE---eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--TEF---VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~--~~v---~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+|++|||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++++. ... .|..+ ..+..+.+.+.. .++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD-LAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence 5789999988 9999999999999999 899998988776543 44542 111 23332 122333333322 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|+++|.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999999884
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=52.27 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ .+... + .|..+ .....+.+.+.. .+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999989999 89999888776543322 23221 2 23332 122222233221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 87 ~id~vi~~Ag~ 97 (263)
T PRK07814 87 RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=51.90 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCce-Ee--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE-FV--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.+ ++... ++ |..+ ..+....+.+.. .+.+|
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 82 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS-YADNQRAVDQTVDAFGKLD 82 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHhcCCCC
Confidence 5789999988 9999999999999999 89999898877665543 33211 22 2222 122333333322 23799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 83 ~li~~ag~ 90 (263)
T PRK06200 83 CFVGNAGI 90 (263)
T ss_pred EEEECCCC
Confidence 99998873
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=51.51 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCceE--e--CCCCCCchHHHHHHHh
Q 016978 192 VEPGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTEF--V--NPKDHDKPIQQVLVDL 260 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~v--~--~~~~~~~~~~~~i~~~ 260 (379)
+.+++++||+|+ | ++|.++++.+...|+ +|+++++++++.+...+ ++...+ + |..+ ..+....+.+.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHH
Confidence 445799999987 6 799999999999999 78888887766544322 443222 2 3322 12233333322
Q ss_pred c--CCCccEEEEcCCC
Q 016978 261 T--DGGVDYSFECIGN 274 (379)
Q Consensus 261 ~--~~g~d~vid~~g~ 274 (379)
. .+++|++|+++|.
T Consensus 92 ~~~~g~id~li~~ag~ 107 (262)
T PRK07831 92 VERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1 2479999999884
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.026 Score=47.23 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=63.8
Q ss_pred cccccccchhhhhhhhhccCCCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~-vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
....|+...++...+.+...--.|++|||+|+|. +|..++..++..|+ +|+.+.++.+
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~-------------------- 79 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTK-------------------- 79 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCch--------------------
Confidence 3455555455544333333346799999999986 59989999999999 7888866522
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.+. .+|+||.+++.++.+.. +.++++ -.++.++.+
T Consensus 80 -~l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~p 118 (168)
T cd01080 80 -NLKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGIN 118 (168)
T ss_pred -hHHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCC
Confidence 1212221 48999999998764433 346664 677777764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.04 Score=49.02 Aligned_cols=79 Identities=24% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+ ++.+... ++ |..+ ..++...+.+.. .+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 888888877755433 2233322 22 3322 122222222221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|.++|.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 79999999875
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=51.69 Aligned_cols=78 Identities=27% Similarity=0.313 Sum_probs=52.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE--eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF--VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v--~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+.++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+ ..++.+.+.+.. .+++|++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD-PASFAAFLDAVEADLGPIDVL 82 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 679999988 9999999998888999 788888888776544 34441222 23333 133333333322 2479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 83 i~~ag~ 88 (273)
T PRK07825 83 VNNAGV 88 (273)
T ss_pred EECCCc
Confidence 999874
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.025 Score=51.14 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c----CCce-E--eCCCCCCchHHHHHHHhc-CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GVTE-F--VNPKDHDKPIQQVLVDLT-DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l----g~~~-v--~~~~~~~~~~~~~i~~~~-~~ 263 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.+.+ + +.+. . .|..+ ..+..+.+.+.. .+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK-REDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHHHhhC
Confidence 4789999988 9999999999999999 89999888776544332 1 3221 2 23332 123333333322 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 79999998874
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.021 Score=56.60 Aligned_cols=73 Identities=27% Similarity=0.300 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+.+|++|+|+|.|..|++++.+++..|+ +|++.+..+++.+.++++|+..+ .... ..+.+ ..+|+|+.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~~----~~~~l-----~~~D~VV~S 77 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STSD----AVQQI-----ADYALVVTS 77 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCcc----hHhHh-----hcCCEEEEC
Confidence 5578999999999999999999999999 89999987776666777887443 2211 11111 147999988
Q ss_pred CCCH
Q 016978 272 IGNV 275 (379)
Q Consensus 272 ~g~~ 275 (379)
.|-+
T Consensus 78 pGi~ 81 (488)
T PRK03369 78 PGFR 81 (488)
T ss_pred CCCC
Confidence 7763
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0085 Score=58.78 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=61.6
Q ss_pred hccCCCCCCEEE----EEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhc
Q 016978 188 NTAKVEPGSIVA----VFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 188 ~~~~~~~g~~Vl----I~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~ 261 (379)
...++++|+.+| |+|+ |++|.+++|+++.+|+ .|+++...+.+....+..+.+ .+++.+. ..+.+.+...+
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~l~~~~ 103 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG--ITDPADLKALY 103 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC--CCCHHHHHHHH
Confidence 456788899988 8865 9999999999999999 888886666544443444444 3455443 22333332221
Q ss_pred CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 262 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.++...+..+.++ |+++.++..
T Consensus 104 --------------~~~~~~l~~l~~~-griv~i~s~ 125 (450)
T PRK08261 104 --------------EFFHPVLRSLAPC-GRVVVLGRP 125 (450)
T ss_pred --------------HHHHHHHHhccCC-CEEEEEccc
Confidence 3456667777775 888887654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.076 Score=45.68 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=63.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~ 259 (379)
+....++.++++||=+|+| .|..++.+++.....+|++++.+++..+.+++ ++... ++.. +..+.+..
T Consensus 32 l~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG-----SAPECLAQ 105 (196)
T ss_pred HHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC-----chHHHHhh
Confidence 3455667889999888774 34455566665433489999999988776653 45432 2221 12222222
Q ss_pred hcCCCccE-EEEcCCC-HHHHHHHHHHhccCCceEEEEcc
Q 016978 260 LTDGGVDY-SFECIGN-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~~~g~d~-vid~~g~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.. ..+|. .++.... ...++.+.+.|+++ |+++....
T Consensus 106 ~~-~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~ 143 (196)
T PRK07402 106 LA-PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS 143 (196)
T ss_pred CC-CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence 22 12344 4443222 46788999999997 99887743
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.025 Score=51.77 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce---EeCCCC---CCchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE---FVNPKD---HDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~---v~~~~~---~~~~~~~~i~~~~~~g~d~ 267 (379)
..++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-... .++... ...+..+.+.. ..+.+|+
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 468999998864 666777777767779999999999888887632100 000000 01233334443 3448999
Q ss_pred EEEcCCC----------HHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECIGN----------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
||--... .++++.+.+.|+++ |.++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 8853211 34567888999997 998865
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.024 Score=51.58 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-e-E--eCCCCCCchHHHHHHHhcC--CCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-E-F--VNPKDHDKPIQQVLVDLTD--GGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~-v--~~~~~~~~~~~~~i~~~~~--~g~d 266 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+.... . . .|..+ .......+..... +++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD-FDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 3578999988 9999999999888999 899999988877655543221 1 1 23322 1223333333221 3689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 81 ~vv~~ag~ 88 (277)
T PRK06180 81 VLVNNAGY 88 (277)
T ss_pred EEEECCCc
Confidence 99999886
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=53.77 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+|++|||+|||+.+.+++.-+...|+.+++++.++.+|.+.+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999998899999999988666654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.035 Score=48.06 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|+|+|+|++|..+++.+..+|..+++.++.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999899999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=51.02 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce---EeCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~---v~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+. +.+... ..|..+ ...+.+.+.+.. .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999999999999999 8999988877654433 223222 123322 123333333322 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 79999998774
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.24 Score=42.97 Aligned_cols=93 Identities=22% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.|.+|||+|+|.+|..-++.+...|+ +|++++.... .+..+.+.|- ..+...+... +. + .++++||-++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~-i~~~~~~~~~---~d---l--~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGG-ITWLARCFDA---DI---L--EGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCC-EEEEeCCCCH---HH---h--CCcEEEEECC
Confidence 47899999999999999999999999 8888865432 2223333332 1121222111 11 1 3699999999
Q ss_pred CCHHHHHHHHHHhccCCceEEEEcc
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.+..-..+....+.. |..|....
T Consensus 78 ~d~~ln~~i~~~a~~~-~ilvn~~d 101 (205)
T TIGR01470 78 DDEELNRRVAHAARAR-GVPVNVVD 101 (205)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEECC
Confidence 9866555566666664 88776544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=51.24 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcC--Cce-Ee--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG--VTE-FV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg--~~~-v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
++.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. .+. ... ++ |..+ ...+...+.+.. .+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EADVEAAVAAALERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4679999988 9999999988888899 7999999887655432 222 111 22 2222 133333333321 237
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+||.++|.
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.032 Score=49.14 Aligned_cols=104 Identities=25% Similarity=0.293 Sum_probs=74.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHh
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~ 260 (379)
+..+.++.||++|+=.|.| .|.+++-||++.|. .+|+..+..++..+.+++ +|....+.... .| +++.
T Consensus 86 I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~--~D----v~~~ 158 (256)
T COG2519 86 IVARLGISPGSRVLEAGTG-SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL--GD----VREG 158 (256)
T ss_pred HHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe--cc----cccc
Confidence 4567789999999988875 58888889998875 699999999988877764 34333111111 12 2222
Q ss_pred cCC-CccEEE-EcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 261 TDG-GVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 261 ~~~-g~d~vi-d~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
..+ .+|.|| |.--..+.++.+.+.|+++ |.++.+..
T Consensus 159 ~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P 196 (256)
T COG2519 159 IDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP 196 (256)
T ss_pred ccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence 223 688755 7666678899999999997 99998854
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.028 Score=50.06 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCce-E--eCCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.|++|||+|+ |.+|...+..+...|+ +|+.+++++. ..+.+++++... + .|..+ ..++...+.+.. .+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4789999988 9999999999989999 8998877652 223344445322 2 22222 233333333322 1369
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 82 d~li~~ag~ 90 (248)
T TIGR01832 82 DILVNNAGI 90 (248)
T ss_pred CEEEECCCC
Confidence 999998874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.046 Score=48.24 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCC----hhH--------HHHHHhcCCceEeCCCCCCchHHHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDID----PKK--------FDRAKNFGVTEFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~--~vi~v~~~----~~~--------~~~~~~lg~~~v~~~~~~~~~~~~~i~ 258 (379)
-.+.+|+|+|+|+.|..++..+...|.+ +++.++++ .++ .++++.++... . + .++.+.+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~--~~l~~~l- 95 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G--GTLKEAL- 95 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c--CCHHHHH-
Confidence 4678999999999999999988899997 89999988 443 33445443211 0 0 1233333
Q ss_pred HhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.++|++|++++...+-...++.+.++ ..+..+..
T Consensus 96 ----~~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~lsn 129 (226)
T cd05311 96 ----KGADVFIGVSRPGVVKKEMIKKMAKD-PIVFALAN 129 (226)
T ss_pred ----hcCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeCC
Confidence 14899999987433234666777774 66655544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.037 Score=50.68 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
..+++|+|+|+|+.|.+++..+..+|+++|+.++++.+|.+.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 35689999999999999999999999988999999988766543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=44.96 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|.+|||+|+|.+|..-++.+...|+ +|++++... +..++ .-... . ..+ . ..-.++++|+-+.+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~~--~i~~~-~----~~~----~-~~l~~~~lV~~at~ 69 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSEG--LIQLI-R----REF----E-EDLDGADLVFAATD 69 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHHT--SCEEE-E----SS-----G-GGCTTESEEEE-SS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhhh--HHHHH-h----hhH----H-HHHhhheEEEecCC
Confidence 57899999999999999999999999 899987764 21221 11111 1 112 1 11137999999998
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCC
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.+..-..+....+. .|.++......
T Consensus 70 d~~~n~~i~~~a~~-~~i~vn~~D~p 94 (103)
T PF13241_consen 70 DPELNEAIYADARA-RGILVNVVDDP 94 (103)
T ss_dssp -HHHHHHHHHHHHH-TTSEEEETT-C
T ss_pred CHHHHHHHHHHHhh-CCEEEEECCCc
Confidence 87766666666666 49998886643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.22 Score=43.12 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=56.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-H-HHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-K-FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-~-~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.|.+|||+|+|.+|...+..+...|+ +|++++.... . .+++.+ +. ..+.... +. ...-.++|+||-+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~-i~~~~~~----~~----~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GK-IRWKQKE----FE----PSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CC-EEEEecC----CC----hhhcCCceEEEEc
Confidence 57899999999999999988888998 8888865321 2 222222 21 1111111 00 0001268999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++.+. ++..+...+.. +.++....
T Consensus 78 T~d~e-lN~~i~~~a~~-~~lvn~~d 101 (202)
T PRK06718 78 TNDPR-VNEQVKEDLPE-NALFNVIT 101 (202)
T ss_pred CCCHH-HHHHHHHHHHh-CCcEEECC
Confidence 98865 66666655564 66666644
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.012 Score=51.56 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=66.1
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~ 258 (379)
+.+...++++++||-+|+| .|..++.+++..+. .+|++++.+++-.+.+++ +|.+. ++..+. .+..
T Consensus 69 ~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~-----~~~~- 141 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG-----TQGW- 141 (215)
T ss_pred HHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc-----ccCC-
Confidence 4556678899999999885 46677778887653 369999999887766653 44432 221111 1100
Q ss_pred HhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.||+|+-..........+.+.|+++ |+++..
T Consensus 142 -~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~ 176 (215)
T TIGR00080 142 -EPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP 176 (215)
T ss_pred -cccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence 01237998885544445567788999997 998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.035 Score=49.98 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c--CCc-eEe--CCCCCCchHHHHHHHhc-CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F--GVT-EFV--NPKDHDKPIQQVLVDLT-DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l--g~~-~v~--~~~~~~~~~~~~i~~~~-~~g~ 265 (379)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ + +.. +.+ |..+ .....+.+.... .+.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS-EAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHhcCCC
Confidence 4688999987 9999999998888999 89999888876654432 2 211 122 2222 122222222221 2478
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 82 d~lv~~ag~ 90 (263)
T PRK09072 82 NVLINNAGV 90 (263)
T ss_pred CEEEECCCC
Confidence 999998875
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.03 Score=49.90 Aligned_cols=79 Identities=27% Similarity=0.316 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc-eE--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EF--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~-~v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+. +.+.. +. .|..+ .......+.+.. .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD-PDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4688999988 9999999998888999 8999988876543332 12221 11 23222 122222222221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|+||+++|.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999998883
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.065 Score=53.55 Aligned_cols=103 Identities=26% Similarity=0.367 Sum_probs=68.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceE---eCCCCCCchHHHHHHHhc--CCCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEF---VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
..|+++||+|+ +++|...++.+...|+ +|+.+++++++.+.+.+ ++.... .|..+ ..+....+.+.. .+.+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD-EAAVESAFAQIQARWGRL 344 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 46789999988 9999999999999999 89999998877665543 444321 23332 123333333322 2479
Q ss_pred cEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 266 DYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 266 d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|++|+++|.. .+.+.++..++.+ |+++.++..
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~ 402 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSI 402 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECch
Confidence 9999988741 1134445556664 899988764
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.064 Score=49.50 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh------HHHHHHhcCCceE---eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK------KFDRAKNFGVTEF---VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~------~~~~~~~lg~~~v---~~~~~~~~~~~~~i~~~~-- 261 (379)
.|++|||+|+ |++|..++..+...|+ +|+.+.++.+ ..+.+++.|.... .|..+ .....+.+.+..
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999998888999 7777654332 1223344454332 12222 122233333222
Q ss_pred CCCccEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 262 DGGVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+++|++|+++|.. .+++.++..+.++ |+++.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~~sS~ 193 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG-ASIINTGSI 193 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC-CEEEEECCc
Confidence 23799999988731 1234445556675 898887654
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.039 Score=50.15 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=65.8
Q ss_pred ccccccchhhhhhhhhccC-CCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~-~~~g~~VlI~Gag~-vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
..+||+....+. +++..+ --.|++|+|+|.|. +|.-+++++...|+ +|+.+.+...
T Consensus 136 ~~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~-------------------- 193 (286)
T PRK14175 136 TFVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK-------------------- 193 (286)
T ss_pred CCCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch--------------------
Confidence 345665444444 344444 34799999999965 99999999999999 7887744221
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.++ .+|+||-++|.+..+.. ..++++ ..++.+|..
T Consensus 194 -~l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~ 232 (286)
T PRK14175 194 -DMASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNT 232 (286)
T ss_pred -hHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCC
Confidence 1222222 48999999999876665 458886 888888874
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.03 Score=50.16 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-E--eCCCCCCchHHHHHHHhcCCCcc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-F--VNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v--~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+++ .+... + .|..+ . +.+.+...+++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD--A---IDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC--H---HHHHHHhcCCCC
Confidence 468999988 9999999999999999 88888887765544332 33221 1 23322 1 123333334799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 76 ~vi~~ag~ 83 (257)
T PRK09291 76 VLLNNAGI 83 (257)
T ss_pred EEEECCCc
Confidence 99998873
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.039 Score=50.02 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCCCEEEEEcC-ChHHHH-HHHHHHHcCCCeEEEEcCChhHHHHHH-----hcCCc---eEeCCCCCCchHHHHHHHhcC
Q 016978 193 EPGSIVAVFGL-GTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRAK-----NFGVT---EFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~-a~~la~~~g~~~vi~v~~~~~~~~~~~-----~lg~~---~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+.|++.+|+|+ .++|.+ |-+||+ .|. +|+.++|+++|++..+ +.++. +++|..+.+. ..+.+++...
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLA 123 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhc
Confidence 45799999998 899987 566666 999 8999999999987654 34431 2456655333 4556666666
Q ss_pred C-CccEEEEcCCC
Q 016978 263 G-GVDYSFECIGN 274 (379)
Q Consensus 263 ~-g~d~vid~~g~ 274 (379)
+ .+-++++++|.
T Consensus 124 ~~~VgILVNNvG~ 136 (312)
T KOG1014|consen 124 GLDVGILVNNVGM 136 (312)
T ss_pred CCceEEEEecccc
Confidence 6 78889999886
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=41.60 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|.+|||+|+|.+|.--++.+...|+ +|++++ ++..+.+++++.-. ..... + .+..-.++|+|+-+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~----~----~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT----F----SNDDIKDAHLIYAATN 79 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc----c----ChhcCCCceEEEECCC
Confidence 57999999999999999988888999 788773 33323334454211 11111 1 1111127899999988
Q ss_pred CHHHHHHHHHHhccCCceEEEE
Q 016978 274 NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
..+ .+..+..+++. +.++..
T Consensus 80 d~e-~N~~i~~~a~~-~~~vn~ 99 (157)
T PRK06719 80 QHA-VNMMVKQAAHD-FQWVNV 99 (157)
T ss_pred CHH-HHHHHHHHHHH-CCcEEE
Confidence 855 77777666664 444444
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.033 Score=49.62 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhcC--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~ 263 (379)
+++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ ++.+... . .|..+ .....+.+..... +
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 899998887665433 2334432 2 22222 1233333333222 3
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|.+|+++|
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.032 Score=51.38 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |++|...++.+...|+ +|++++++.++.+.+. +.+.+. ++ |..+ ..++.+.+.... .+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 3589999988 9999999998888899 8999999887655443 233322 22 2222 123333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++++++|.
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 78999999874
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.034 Score=49.48 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
++++|||+|+ |.+|..+++.+...|+ +|+++++++++.+. .++++.... .|..+ ..+....+.... .+++|
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD-VAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4789999988 9999999999999999 89999888766543 344554321 22222 122222222221 23789
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=52.32 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=50.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.+++|||+|+|+.|.+++.-+..+|+++|+++.++.+|.+.+. .++... +.... ..+.+.... ..+|+||+|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~~~~~~~~-~~~DiVIna 197 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GDSGGLAIE-KAAEVLVST 197 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----chhhhhhcc-cCCCEEEEC
Confidence 5789999999999999999999999989999999988766554 333211 11010 001111111 268999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
++.
T Consensus 198 Tp~ 200 (282)
T TIGR01809 198 VPA 200 (282)
T ss_pred CCC
Confidence 775
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.063 Score=49.79 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=62.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.+|.|+|+|.+|...+..++..|. .+|+++++++++.+.+++.|...... .+..+.+ ..+|+||.|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-----~~~~~~~-----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-----TSAAEAV-----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-----CCHHHHh-----cCCCEEEECCCH
Confidence 679999999999999998888884 37999999999888888887532111 1111111 258999999876
Q ss_pred HH---HHHHHHHHhccCCceEEEEcc
Q 016978 275 VS---VMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 275 ~~---~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.. .+......++++ ..++.+|.
T Consensus 77 ~~~~~v~~~l~~~l~~~-~iv~dvgs 101 (307)
T PRK07502 77 GASGAVAAEIAPHLKPG-AIVTDVGS 101 (307)
T ss_pred HHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence 33 233334455664 66666654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.039 Score=49.53 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCC--c-eE--eCCCCCCchHHHHHHHhc--CCCc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV--T-EF--VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~--~-~v--~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
+.+|||+|+ |++|...+..+...|+ +|+.++++.++.+.+.+ +.. + .. .|..+ ..++.+.+.+.. .+.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD-ADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC-HHHHHHHHHHHHHhCCCC
Confidence 468999988 9999999988888899 89999888877654432 221 1 11 23322 133333333322 2368
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 80 d~lv~~ag~ 88 (257)
T PRK07024 80 DVVIANAGI 88 (257)
T ss_pred CEEEECCCc
Confidence 999998773
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=46.70 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
++++++||-+|+| .|..++.+++.....+|++++.+++..+.+++ .+.+.+ .... .+..+ +. . .+.+|+
T Consensus 43 l~~g~~VLDiGcG-tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~--~d~~~-~~-~-~~~fDl 115 (187)
T PRK00107 43 LPGGERVLDVGSG-AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVH--GRAEE-FG-Q-EEKFDV 115 (187)
T ss_pred cCCCCeEEEEcCC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe--ccHhh-CC-C-CCCccE
Confidence 4458999999875 35556666665543499999999887766653 444321 1111 12211 11 1 237999
Q ss_pred EEEcCCC--HHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECIGN--VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~g~--~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+-.... ...+..+.+.|+++ |+++.+
T Consensus 116 V~~~~~~~~~~~l~~~~~~LkpG-G~lv~~ 144 (187)
T PRK00107 116 VTSRAVASLSDLVELCLPLLKPG-GRFLAL 144 (187)
T ss_pred EEEccccCHHHHHHHHHHhcCCC-eEEEEE
Confidence 9853222 46788899999997 999877
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.042 Score=51.10 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE--eCCCCCCchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF--VNPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v--~~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
.+.+|||+|+ |++|..++..+...|+ +|+++++++++.+.+ .++..-.. .|..+ ..+..+.+.+.. .+++|+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d-~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD-LESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC-HHHHHHHHHHHHhcCCCCCE
Confidence 4689999988 9999999998888999 899998887765433 22221122 23322 123333333322 247999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|+++|.
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9998873
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.035 Score=50.42 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc------eEeCCCCC--CchHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT------EFVNPKDH--DKPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~------~v~~~~~~--~~~~~~~i~~~ 260 (379)
.|+.+||+|+ .++|.+++..+...|+ +|+.+++++++.+..++ .+.. .+.|..+. ...+.+...+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 5789999987 9999999999999999 99999999887654432 2322 12222221 12233334344
Q ss_pred cCCCccEEEEcCCC
Q 016978 261 TDGGVDYSFECIGN 274 (379)
Q Consensus 261 ~~~g~d~vid~~g~ 274 (379)
..++.|++++..|.
T Consensus 86 ~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 86 FFGKIDILVNNAGA 99 (270)
T ss_pred hCCCCCEEEEcCCc
Confidence 45689999998775
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.032 Score=50.26 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----h-c-CCce---EeCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----N-F-GVTE---FVNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~-l-g~~~---v~~~~~~~~~~~~~i~~~~-- 261 (379)
.|+++||+|+ +++|...++.+...|+ +|+.+++++++.+.+. + . +... ..|..+ ..+..+.+.+..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD-EADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4789999988 9999999999999999 8999989887654332 1 1 1111 123333 123333333322
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+.+|++++++|.
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 2479999999884
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.034 Score=49.95 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH----HHHhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD----RAKNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~----~~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|+|+|+ |.+|..+++.+...|+++|+++++++++.+ .+++.+.... .|..+ ...+.+.+.... .+
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5789999988 999999999999999944999988766544 2233444321 23322 122333333321 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|++.|.
T Consensus 84 ~id~li~~ag~ 94 (260)
T PRK06198 84 RLDALVNAAGL 94 (260)
T ss_pred CCCEEEECCCc
Confidence 69999999874
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.054 Score=47.89 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHhcCCceE-eCCCCCCchHHHHHHHhcC--CCccEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTD--GGVDYSF 269 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~--~g~d~vi 269 (379)
++++||+|+ |++|..+++.+...|+ +|+.+++++++ .+.+++.++..+ .|..+ ..+....+.+... +++|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST-NAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC-HHHHHHHHHHHHhhCCCccEEE
Confidence 468999988 9999999998888999 88888876643 344445554322 23222 1233333333322 3699999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 80 ~~ag~ 84 (236)
T PRK06483 80 HNASD 84 (236)
T ss_pred ECCcc
Confidence 98874
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.075 Score=45.94 Aligned_cols=47 Identities=43% Similarity=0.604 Sum_probs=40.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV 240 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~ 240 (379)
-.|.+|+|+|.|.+|..+++.+...|+ +|++++.++++.+.+.+ +|+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~ 73 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA 73 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence 467899999999999999999999999 89999998887666554 464
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.03 Score=48.26 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=61.7
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCceEeCCCCCCchHHHHHHHhc-C
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT-D 262 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~v~~~~~~~~~~~~~i~~~~-~ 262 (379)
+.....++.+||-+|+|. |..+..+|+. |. +|++++.+++-.+.+++. +...+ .... .++ .... .
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~--~d~----~~~~~~ 93 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV--VDL----NNLTFD 93 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe--cCh----hhCCcC
Confidence 344455778999998863 7777788875 77 999999998876665542 22211 0000 111 1111 2
Q ss_pred CCccEEEEcCC----C----HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSFECIG----N----VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vid~~g----~----~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.+|+|+.... . ...+..+.+.|+++ |.++.+.
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~ 134 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA 134 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence 37999987533 1 35577888889997 9965543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.073 Score=49.19 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCC---CchHHHHHHHhcCCCccE
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDH---DKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~---~~~~~~~i~~~~~~g~d~ 267 (379)
...++|||+|.|. |.++..+++.-+..+|++++.+++-.+.++++-... .++.... ..+..+.+++...+.+|+
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 4568999998865 556678888766668999999988788887642210 0100000 123444454443447999
Q ss_pred EEEcCCC----------HHHHHHHHHHhccCCceEEEEc
Q 016978 268 SFECIGN----------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 268 vid~~g~----------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
||--... .++++.+.++|+++ |.++..+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence 8743222 35688999999997 9997653
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.035 Score=54.71 Aligned_cols=78 Identities=31% Similarity=0.402 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh---------------------hHHHHHHhcCCceEeCCCCCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP---------------------KKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~---------------------~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..+++|+|+|+|+.|+.++..++..|+ .|+.++..+ ...+.++++|++..++..-. .
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~ 216 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG-R 216 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC-C
Confidence 368999999999999999999999999 788887653 24567788998765543211 1
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCH
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
++ .+.... .++|.||.++|..
T Consensus 217 ~~--~~~~~~-~~~D~vilAtGa~ 237 (467)
T TIGR01318 217 DI--SLDDLL-EDYDAVFLGVGTY 237 (467)
T ss_pred cc--CHHHHH-hcCCEEEEEeCCC
Confidence 11 111111 2699999999974
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.041 Score=49.24 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |++|...+..+...|+ +|+.+++++++.+.+. +.+.+. ++ |..+ .......+.+.. .+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4689999988 9999999998889999 8999988877655432 234332 22 2222 122222233221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++++++|.
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.035 Score=49.73 Aligned_cols=79 Identities=29% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++.|... .+ |..+ ..++.+.+.+.. .+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 5789999988 9999999998888899 899998887654332 2233222 12 3322 133333333322 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|+++|.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.064 Score=49.02 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
..+++|||+|+|+.|.+++.-+..+|++++++++++.+|.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 34789999999999999998888899989999999988765554
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.043 Score=48.55 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+ ++.+.... .|..+ ...+...+.+.. .+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD-EAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 3578999998 9999999999888999 799998887764433 33443322 23322 223333333322 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|.++.++|.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 68999998865
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.04 Score=50.33 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hh---cCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KN---FGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~---lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+.++||+|+ |.+|..++..+...|+ +|++++++.++.+.+ .+ .+... ++ |..+ ..++.+.+.... .+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFG 82 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 3678999988 9999999998888999 899998876654433 22 23322 12 2222 123333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 68999998875
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.023 Score=47.23 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=49.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC--hhHHH-H---HHhcCCceE-eC--CCCCCchHHHHHHHhc--CC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID--PKKFD-R---AKNFGVTEF-VN--PKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~--~~~~~-~---~~~lg~~~v-~~--~~~~~~~~~~~i~~~~--~~ 263 (379)
++|||+|+ +++|...++.+...|..+|+.+.++ .++.+ + +++.+.... +. ..+ ..++...+.+.. .+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 47899988 9999998888888877688888888 34333 2 233453222 21 111 233444444433 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|.+.|.
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999998886
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.046 Score=48.99 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
.++++||+|+ |++|...++.+...|+ +|+.+.+ +++..+.+++.+...+ .|..+ ..+..+.+.+.. .+++|++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~id~l 83 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN-RDQVKKSKEVVEKEFGRVDVL 83 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4689999988 9999999999988999 6776644 3444444444343222 23332 123333333322 2379999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
|.++|.
T Consensus 84 i~~ag~ 89 (255)
T PRK06463 84 VNNAGI 89 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.045 Score=49.81 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|...+..+...|+ +|+.+++++++.+.+ ++.+... . .|..+ ..++.+.+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 788888877655432 2234322 1 22222 122333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|+++|.
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999998873
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.049 Score=48.75 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++++|||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+ .+... ..|..+ ...+...+.+.. .+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999889999 89999888776544322 23221 223322 123333333322 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|.++|.
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999998864
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.037 Score=49.60 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=49.6
Q ss_pred CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Gag---~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
.|+++||+|++ ++|.++++.+...|+ +|+.+.++++..+.++++.... . .|..+ ..+..+.+.+.. .+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS-DESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC-HHHHHHHHHHHHHHhCC
Confidence 57899999874 899999998888999 8888877754444444442211 1 22222 122333333322 247
Q ss_pred ccEEEEcCC
Q 016978 265 VDYSFECIG 273 (379)
Q Consensus 265 ~d~vid~~g 273 (379)
+|++++++|
T Consensus 84 iD~lv~nAg 92 (252)
T PRK06079 84 IDGIVHAIA 92 (252)
T ss_pred CCEEEEccc
Confidence 999999877
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.041 Score=56.49 Aligned_cols=75 Identities=29% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHHhcCCceEeCCCCC-Cc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRAKNFGVTEFVNPKDH-DK 251 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~---------------------~~~~~~~lg~~~v~~~~~~-~~ 251 (379)
.+++|+|+|+|+.|+.+++.+...|+ +|++++..+. +.++++++|++..++..-. +.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 48999999999999999999999999 7888876652 4577788998766554321 11
Q ss_pred hHHHHHHHhcCCCccEEEEcCCC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.+. ++. .++|.||.++|.
T Consensus 388 ~~~----~l~-~~~DaV~latGa 405 (639)
T PRK12809 388 TFS----DLT-SEYDAVFIGVGT 405 (639)
T ss_pred CHH----HHH-hcCCEEEEeCCC
Confidence 221 121 268999999887
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.045 Score=49.72 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=50.1
Q ss_pred CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHHhcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKKF----DRAKNFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Gag---~vG~~a~~la~~~g~~~vi~v~~~~~~~----~~~~~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|++ ++|.+.++.+...|+ +|+.++++++.. ++.+++|....+ |..+ ..+..+.+.+.. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED-IASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC-HHHHHHHHHHHHHHh
Confidence 57899999984 899999999999999 888887765322 222334543322 3332 123333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++++++|.
T Consensus 84 g~iD~lVnnAG~ 95 (271)
T PRK06505 84 GKLDFVVHAIGF 95 (271)
T ss_pred CCCCEEEECCcc
Confidence 479999998873
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.046 Score=48.85 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |.+|..++..+...|+ +|+.+++++++.+.+ ++.+... . .|..+ ..++...+.+.. .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR-DAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999999988888899 899998887654322 3334322 2 22222 122223222221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.043 Score=49.17 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCce-E--eCCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
+|+++||+|+ +++|.++++.+...|+ +|+.+++++. ..+.+++.+.+. . .|..+ ..+..+.+.+.. .+++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4789999988 9999999999999999 8888876542 123334455432 1 23333 133333333321 2479
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 999998874
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.028 Score=51.38 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
..+++|||+|+|++|.+++..+...|+.+|++++++.++.+.+. .++....+.. + .+. .+. -..+|+|++|
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~--~~~----~~~-~~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D--LEL----QEE-LADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c--ccc----hhc-cccCCEEEEC
Confidence 45789999999999999999999999669999999988765554 3332100101 0 000 010 1268999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
++.
T Consensus 193 Tp~ 195 (278)
T PRK00258 193 TSA 195 (278)
T ss_pred CcC
Confidence 775
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.069 Score=47.92 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=49.7
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhH-HHH----HHhcCC-c-eEe--CCCCCCchHHHHHHHh
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKK-FDR----AKNFGV-T-EFV--NPKDHDKPIQQVLVDL 260 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g-~~~vi~v~~~~~~-~~~----~~~lg~-~-~v~--~~~~~~~~~~~~i~~~ 260 (379)
+..+.+|||+|+ |++|..+++-+...| + +|+++++++++ .+. +++.+. + +++ |..+ ..+..+.+.+.
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~-~~~~~~~~~~~ 82 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD-TDSHPKVIDAA 82 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC-hHHHHHHHHHH
Confidence 456789999988 999999888766664 7 88888887764 332 233332 1 222 3322 12333333333
Q ss_pred cC-CCccEEEEcCCC
Q 016978 261 TD-GGVDYSFECIGN 274 (379)
Q Consensus 261 ~~-~g~d~vid~~g~ 274 (379)
.. +++|+++.++|.
T Consensus 83 ~~~g~id~li~~ag~ 97 (253)
T PRK07904 83 FAGGDVDVAIVAFGL 97 (253)
T ss_pred HhcCCCCEEEEeeec
Confidence 22 479999887765
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.075 Score=48.46 Aligned_cols=130 Identities=25% Similarity=0.339 Sum_probs=74.4
Q ss_pred CcceEecCCCCCccccccccccchhhhhhhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 016978 157 DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235 (379)
Q Consensus 157 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~ 235 (379)
...+++|.+.+-+- .....+|++. |... ...++|.+||=+|+| .|.+++- |..+|+.+|+++|.++-..+.+
T Consensus 129 ~~~~i~lDPGlAFG----TG~HpTT~lc-L~~Le~~~~~g~~vlDvGcG-SGILaIA-a~kLGA~~v~g~DiDp~AV~aa 201 (300)
T COG2264 129 DELNIELDPGLAFG----TGTHPTTSLC-LEALEKLLKKGKTVLDVGCG-SGILAIA-AAKLGAKKVVGVDIDPQAVEAA 201 (300)
T ss_pred CceEEEEccccccC----CCCChhHHHH-HHHHHHhhcCCCEEEEecCC-hhHHHHH-HHHcCCceEEEecCCHHHHHHH
Confidence 35666676665332 3334444433 2211 135699999999884 3544443 4456887999999988665555
Q ss_pred Hh----cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEccCC
Q 016978 236 KN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 236 ~~----lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
++ .+........ .........++.+|+|+-.+=. ..+.++....++++ |++++.|...
T Consensus 202 ~eNa~~N~v~~~~~~~-----~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl~ 266 (300)
T COG2264 202 RENARLNGVELLVQAK-----GFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGILE 266 (300)
T ss_pred HHHHHHcCCchhhhcc-----cccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeehH
Confidence 43 3443210000 0000111222489998853321 24567788889997 9999998754
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.039 Score=49.52 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh---cCCce---EeCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTE---FVNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~---lg~~~---v~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++...+...+ .+.+. ..|..+ ..+..+.+.+.. .+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET-YAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC-HHHHHHHHHHHHHHcCC
Confidence 4689999988 9999999999989999 89998887543333332 34332 123332 123333333322 237
Q ss_pred ccEEEEcCC
Q 016978 265 VDYSFECIG 273 (379)
Q Consensus 265 ~d~vid~~g 273 (379)
+|++++++|
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 999999887
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.047 Score=49.56 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh---cCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~---lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+++++||+|+ +++|...++.+...|+ +|++++++++..+.+++ .+... . .|..+ ..+....+.+.. .+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence 4789999988 9999999988888999 89998887433333333 23221 1 23322 123333333322 236
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 83 id~li~~Ag~ 92 (272)
T PRK08589 83 VDVLFNNAGV 92 (272)
T ss_pred cCEEEECCCC
Confidence 8999998764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.054 Score=48.65 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhcC--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~ 263 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+. +.+... . .|..+ ...+...+.+... +
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999999998888999 8999988877655443 223221 1 23332 1233333333211 3
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|.++.++|.
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.05 Score=48.79 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH----HHhcCCceE-e--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR----AKNFGVTEF-V--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~----~~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+. +++.+.... + |..+ ...+.+.+.+.. .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN-EDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999998 9999999999999999 78888888765432 233454332 1 2222 122222222221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|.++|.
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 68999998874
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=47.25 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-H----HHHHhcCCce-Ee--CCCCCCchHHHHHHHhc--
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-F----DRAKNFGVTE-FV--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~----~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~-- 261 (379)
.++.++||+|+ |.+|...+..+...|+ +|+.+.+++++ . +.++..+... ++ |..+ ...+.+.+.+..
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 35789999988 9999998888888899 78888765422 1 2223334322 22 2222 122323333321
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++|.++|.
T Consensus 122 ~~~iD~lI~~Ag~ 134 (290)
T PRK06701 122 LGRLDILVNNAAF 134 (290)
T ss_pred cCCCCEEEECCcc
Confidence 1368999998774
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.039 Score=48.90 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce----EeCCCCC-C---chHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE----FVNPKDH-D---KPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~----v~~~~~~-~---~~~~~~i~~~ 260 (379)
++++|+|+|+ |.+|...++.+...|+ +|+++++++++.+.+. +.+... ..|..+. . ..+.+.+...
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 4689999988 9999999988888999 8999999887655432 222111 1222110 1 1233334443
Q ss_pred cCCCccEEEEcCCC
Q 016978 261 TDGGVDYSFECIGN 274 (379)
Q Consensus 261 ~~~g~d~vid~~g~ 274 (379)
..+.+|++|+++|.
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 32478999998884
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.076 Score=47.70 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=51.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cC-Cc-eE--eCCCCCCchHHHHHHHhc---CCCcc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG-VT-EF--VNPKDHDKPIQQVLVDLT---DGGVD 266 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg-~~-~v--~~~~~~~~~~~~~i~~~~---~~g~d 266 (379)
+++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.+ ++ .. ++ .|..+ ..++.+.+.... .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD-RAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCC
Confidence 57999988 9999999998888999 89999888887655533 32 11 12 23332 133333333321 34799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+++.++|.
T Consensus 80 ~vi~~ag~ 87 (260)
T PRK08267 80 VLFNNAGI 87 (260)
T ss_pred EEEECCCC
Confidence 99999875
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.056 Score=48.98 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC--
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI-- 272 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~-- 272 (379)
..+|.|+|.|.+|.-++.+|..+|+ +|+..+.+.+|+..+..+....+........++.+.+. ++|++|.++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~-----~aDlvIgaVLI 241 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVK-----KADLVIGAVLI 241 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhh-----hccEEEEEEEe
Confidence 3467777999999999999999999 99999999999988887554443222221234433332 478888642
Q ss_pred CC---H-HHHHHHHHHhccCCceEEEEccCC
Q 016978 273 GN---V-SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 273 g~---~-~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
++ | -..++..+.|+++ +.+|++....
T Consensus 242 pgakaPkLvt~e~vk~MkpG-sVivDVAiDq 271 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPG-SVIVDVAIDQ 271 (371)
T ss_pred cCCCCceehhHHHHHhcCCC-cEEEEEEEcC
Confidence 11 2 2357778999997 9999887644
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.094 Score=46.25 Aligned_cols=101 Identities=26% Similarity=0.358 Sum_probs=68.8
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc----CCce-EeCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l----g~~~-v~~~~~~~~~~~~~i~~~ 260 (379)
.+...+.++++||-+|+|. |..+..+++..+ ..++++++.+++..+.+++. +... +...+. ..+ ..
T Consensus 12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~~ 83 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGL-----PF 83 (241)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccC-----CC
Confidence 4566788999999999975 888889998874 34899999999988887764 1111 111111 000 12
Q ss_pred cCCCccEEEEcC------CCHHHHHHHHHHhccCCceEEEEc
Q 016978 261 TDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 261 ~~~g~d~vid~~------g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
..+.+|+|+-.. .....+..+.++|+++ |.++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD 124 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence 234789887531 1245788999999997 9998764
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.068 Score=47.38 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+. +.+... ++ |..+ ...+...+.+.. .+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4578999987 9999999999999999 8999999877654432 223222 22 2222 123333333322 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 69999999874
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.12 Score=45.16 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEeC--------CCCCCchHHHHHHHhc-
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVN--------PKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~--------~~~~~~~~~~~i~~~~- 261 (379)
..++.+||+.|+| .|.-++.||. .|. .|++++.++.-.+.+. +.+...... ....-.-+...+.+..
T Consensus 32 ~~~~~rvLd~GCG-~G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCG-KSLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCC-chhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3577899999986 5777888875 699 8999999998777642 233211000 0000000000111111
Q ss_pred --CCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 --DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 --~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.||.|+|+..- ...+..+.++|+++ |++++++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~ 153 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL 153 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence 1368999997531 34588999999997 98776655
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.049 Score=48.52 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc--CCce-Ee--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF--GVTE-FV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l--g~~~-v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.+.++.++.+... ++ +... ++ |..+ .....+.+.+.. .++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS-AEAVEALVDFVAARWGR 81 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence 4679999988 9999999988888899 8999988876544332 22 3221 22 2222 122323333221 137
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+++.++|.
T Consensus 82 id~vi~~ag~ 91 (252)
T PRK06138 82 LDVLVNNAGF 91 (252)
T ss_pred CCEEEECCCC
Confidence 9999999884
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.073 Score=46.96 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.+.+. .+ |..+ ..+..+.+.+.. .+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999998888888999 899998888765433 2334332 12 2222 123333333321 23
Q ss_pred -CccEEEEcCC
Q 016978 264 -GVDYSFECIG 273 (379)
Q Consensus 264 -g~d~vid~~g 273 (379)
.+|++|+++|
T Consensus 82 ~~iD~li~nag 92 (227)
T PRK08862 82 RAPDVLVNNWT 92 (227)
T ss_pred CCCCEEEECCc
Confidence 6999999986
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.053 Score=48.53 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=50.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+. +.+... . .|..+ .....+.+.+.. .++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 578999988 9999999999999999 8999988876654332 223222 1 22222 123333333322 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|+++|.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 9999998864
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.058 Score=48.99 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=50.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CCce-E--eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTE-F--VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
++|||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+++. +... + .|..+ ...+.+.+.+.. .+++|+|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 57999988 9999999988888899 899998988776655442 2221 1 22222 122333333321 2378999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
|+++|.
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 998874
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.067 Score=47.86 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHHhcCCceE--eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~~lg~~~v--~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.|+++||+|+ |++|..+++.+...|+ +|+++++++ ++.+.... +.... .|..+ .+ .+.+.. +.+|++|
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~~-~~~~~~~~D~~~--~~---~~~~~~-~~iDilV 84 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESNDE-SPNEWIKWECGK--EE---SLDKQL-ASLDVLI 84 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhcc-CCCeEEEeeCCC--HH---HHHHhc-CCCCEEE
Confidence 3689999988 9999999999999999 888887765 32222111 11122 22222 11 222222 3699999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 85 nnAG~ 89 (245)
T PRK12367 85 LNHGI 89 (245)
T ss_pred ECCcc
Confidence 99874
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.03 Score=50.62 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=50.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
+++|+|+|+ |.+|...++.+...|+ +|++++++.++.+... +... ..|..+ ..++...+.+.. .+.+|++|+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d-~~~~~~~~~~~~~~~g~~d~li~ 79 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD-DASVQAAVDEVIARAGRIDVLVN 79 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC-HHHHHHHHHHHHHhCCCCCEEEE
Confidence 568999988 9999999998888999 8999988766543221 2222 123322 233444444332 237999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 80 ~ag~ 83 (270)
T PRK06179 80 NAGV 83 (270)
T ss_pred CCCC
Confidence 9884
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.065 Score=49.84 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc-----CCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l-----g~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.|++++|+|+ +++|..++..+...|+ +|+.+.+++++.+.+. ++ +... + .|..+ ..+..+.+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d-~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS-LASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4789999988 9999999998888999 8998888877654322 11 1111 1 23332 122222222221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+.+|++|+++|.
T Consensus 91 ~~~iD~li~nAG~ 103 (313)
T PRK05854 91 GRPIHLLINNAGV 103 (313)
T ss_pred CCCccEEEECCcc
Confidence 2379999998774
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.066 Score=48.37 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh----HHHHHHhcCC-c-eEeCCCCCCchHHHHHHHhcC--C
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK----KFDRAKNFGV-T-EFVNPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~----~~~~~~~lg~-~-~v~~~~~~~~~~~~~i~~~~~--~ 263 (379)
-.|+.|||+|+ +++|.+.++=...+|+ +++..+.+.+ ..+.+++.|- . .+.|-++ .++.....++... |
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEVG 113 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence 36899999988 9999998888888898 7878776553 3445555551 1 1333332 2444444333332 3
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++++.+|-
T Consensus 114 ~V~ILVNNAGI 124 (300)
T KOG1201|consen 114 DVDILVNNAGI 124 (300)
T ss_pred CceEEEecccc
Confidence 79999998774
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=46.66 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CCc----e--EeCCCCCCchHHHHHHHhcCCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVT----E--FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~~----~--v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.+.++||++|.|+ |.++..+++.....++++++.+++-.+.+++. +.. . ++. .+..+.+.+. .+.+
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-----~Da~~~l~~~-~~~y 137 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-----ADGAEYIAVH-RHST 137 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-----CCHHHHHHhC-CCCC
Confidence 3567899999863 77888888877545899999999999988874 211 1 121 2344444433 3479
Q ss_pred cEEE-EcCC---------CHHHHHHHHHHhccCCceEEE
Q 016978 266 DYSF-ECIG---------NVSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 266 d~vi-d~~g---------~~~~~~~~~~~l~~~~G~iv~ 294 (379)
|+|+ |... ..+++..+.+.|+++ |.++.
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi 175 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV 175 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence 9877 4322 147789999999997 99886
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.06 Score=48.36 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc-----CCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l-----g~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+. ++ +... + .|..+ ..++...+.+..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 8999888877654332 22 2211 1 23222 123333333321
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+.+|++++++|.
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 2479999998874
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.061 Score=48.41 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCCEEEEEcCC---hHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHHhcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGLG---TVGLAVAEGAKAAGASRVIGIDIDPKKF----DRAKNFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Gag---~vG~~a~~la~~~g~~~vi~v~~~~~~~----~~~~~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|++ ++|.++++.+...|+ +|+.++++++.. ++.++++....+ |..+ ..+..+.+.... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE-PGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC-HHHHHHHHHHHHHHc
Confidence 47899999873 899999998888999 888887775432 222334432332 2222 123333333322 2
Q ss_pred CCccEEEEcCCCH--------------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV--------------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+|++++++|.. + ..+.++..++.+ |+++.++..
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-g~Ii~iss~ 150 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG-GSLLTMSYY 150 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC-CEEEEEecc
Confidence 4799999987631 0 134455667665 888877653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.061 Score=48.22 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----c--CCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--GVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----l--g~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.|+++||+|+ |.+|..++..+...|+ +|+.+++++++.+.+.+ . +.+. . .|..+ ..++...+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 89999888776544332 1 2222 1 22222 122333333221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|+++.++|.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2479999999874
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.067 Score=47.82 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc----CCce----EeCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----GVTE----FVNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l----g~~~----v~~~~~~~~~~~~~i~~~~-- 261 (379)
++++|||+|+ |.+|...+..+...|+ +|+.+.+++++.+.+ .++ +... ..|..+ ...+.+.+.+..
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD-QESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC-HHHHHHHHHHHHHH
Confidence 5789999988 9999999999999999 888888887765433 222 2221 123332 233333344322
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+++|+++++++
T Consensus 81 ~~~id~vi~~A~ 92 (256)
T PRK09186 81 YGKIDGAVNCAY 92 (256)
T ss_pred cCCccEEEECCc
Confidence 236899999875
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.096 Score=47.49 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=68.4
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc-
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~- 261 (379)
...+..+.++||=+|.+ +|..++++|+.++. .+|+.++.+++..+.+++ .|..+-+.... .+..+.+.++.
T Consensus 112 ~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~--GdA~e~L~~l~~ 188 (278)
T PLN02476 112 MLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH--GLAAESLKSMIQ 188 (278)
T ss_pred HHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHh
Confidence 34456678999999874 57778888888752 379999999988777754 56543222111 23344444431
Q ss_pred ---CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEE
Q 016978 262 ---DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ---~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.||.||--... ...+..++..++++ |.++.=
T Consensus 189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~D 227 (278)
T PLN02476 189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMD 227 (278)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEe
Confidence 2379998844333 45688899999996 887743
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.061 Score=48.09 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=50.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-Ee--CCCCCCchHHHHHHHhc--CCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-FV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
|+++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ .+... ++ |..+ ...+.+.+.+.. .+.
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 578999988 9999999999999999 89999888766544332 23222 22 2222 123333333322 236
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999998873
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.082 Score=45.41 Aligned_cols=76 Identities=26% Similarity=0.307 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c----CCceE-eCCCCCCchHHHHHHHhcCCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----GVTEF-VNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l----g~~~v-~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
++.+++|+|+ |.+|..++..+...|+ +|+.++++.++.+.+.+ + +.... .+..+ ..++.+.+ .++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~-----~~~d 99 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD-DAARAAAI-----KGAD 99 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC-HHHHHHHH-----hcCC
Confidence 5789999987 9999998888888898 89999888877654432 2 22211 11211 12222222 2589
Q ss_pred EEEEcCCCHH
Q 016978 267 YSFECIGNVS 276 (379)
Q Consensus 267 ~vid~~g~~~ 276 (379)
+||.+++...
T Consensus 100 iVi~at~~g~ 109 (194)
T cd01078 100 VVFAAGAAGV 109 (194)
T ss_pred EEEECCCCCc
Confidence 9999877644
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.064 Score=48.25 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=50.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhcC--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLTD--GG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~~--~g 264 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +..+... ++ |..+ ...+...+.+... ++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGG 78 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 357999988 9999999999889999 899998887654432 2234322 11 2222 1333333333321 36
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+||+++|.
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 8999999874
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.087 Score=46.27 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.1
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++...+ .|..+ ..++.+.+.+.. +.+|+++++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~-~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD-PASLEEARGLFP-HHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC-HHHHHHHHHHHh-hcCcEEEECCC
Confidence 5899988 9999999999988999 899898888776544 34444332 23332 123333333332 26899998765
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.17 Score=44.83 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=72.7
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----e--EeCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----E--FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----~--v~~~~~~~~~~~~~i~~~ 260 (379)
....+..+|++||=+|+| .|-+|..+++..|-.+|+++|.+++-++.+++--.+ . .+..+. . .+ .+
T Consensus 44 i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA--e----~L-Pf 115 (238)
T COG2226 44 ISLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA--E----NL-PF 115 (238)
T ss_pred HHhhCCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech--h----hC-CC
Confidence 344456689999988765 688999999999866999999999988877753222 1 111111 0 11 12
Q ss_pred cCCCccEEEEcCCC------HHHHHHHHHHhccCCceEEEEccCC
Q 016978 261 TDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 261 ~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.+..||+|.-+.|- +..++++.+.|+|+ |+++.+....
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~ 159 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSK 159 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCC
Confidence 33378988876553 46799999999997 9998886643
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.049 Score=48.68 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-E--eCCCCCCchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
.++++||+|+ |++|..+++.+...|+ +|+.+++++++ ...+... + .|..+ ..++.+.+.... .+.+|+
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~ 78 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRD-PDQVAALVDAIVERHGRLDV 78 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4789999988 9999999999988999 89998887654 1122211 1 23222 123333333321 236899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|.++|.
T Consensus 79 vi~~ag~ 85 (252)
T PRK07856 79 LVNNAGG 85 (252)
T ss_pred EEECCCC
Confidence 9998873
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.064 Score=47.90 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc-eEe--CCCCCCchHHHHHHHhcC--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-EFV--NPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~-~v~--~~~~~~~~~~~~i~~~~~--~ 263 (379)
++++|||+|+ |.+|...++.+...|+ +|+.++++.++.+.+. +.+.. ..+ |..+ ..+....+.+... +
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE-MEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4678999988 9999999999999999 8999988876554332 22322 122 2222 1223333333221 3
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
.+|++++++|
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6899999887
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.2 Score=44.41 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHH----HHHHhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKF----DRAKNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~----~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
++.++||+|+ |.+|..++..+...|+ +++.+.++. ++. +.+++.+... .+ |..+ ..+..+.+.+.. .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 5689999988 9999999999999999 676665533 222 2223334322 22 2222 122323333221 2
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++|.++|.. ..++.++..++.. |+++.++..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~ 141 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG-GRIINLSTS 141 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC-cEEEEEeec
Confidence 4799999988741 1133445555665 889888754
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.07 Score=49.66 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=60.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|||+|+ |-+|..++..+...|. +|+++.++.++...+...+...+. |..+ ...+ .+.. .++|+||++++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d-~~~l----~~al-~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL-PETL----PPSF-KGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC-HHHH----HHHH-CCCCEEEECCCC
Confidence 6999998 9999999999988999 899998887766555555654432 2222 1222 2222 268999998763
Q ss_pred HH------------HHHHHHHHhccC-CceEEEEccC
Q 016978 275 VS------------VMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 275 ~~------------~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
.. ....+++.++.. -.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 10 113344555543 1378877663
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.07 Score=47.81 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCCce-E--eCCCCCCchHHHHHHHhcC--CCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~g~d 266 (379)
.|++|||+|+ |.+|..++..+...|+ +|+.+++++++.+. .++++... . .|..+ ..+..+.+.+... +.+|
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~id 86 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 4789999988 9999999998888999 89888877665443 34444322 1 22222 1223222333222 3689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|.++|.
T Consensus 87 ~li~~ag~ 94 (255)
T PRK05717 87 ALVCNAAI 94 (255)
T ss_pred EEEECCCc
Confidence 99998874
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.07 Score=48.50 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC--c-eEe--CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--T-EFV--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~--~-~v~--~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. ..+. . +++ |..+ ..++.. +.+..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~-~~~~~~~ 78 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD-QNSIHN-FQLVLKE 78 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC-HHHHHH-HHHHHHh
Confidence 3578999988 9999999998888999 8999888776654432 2221 1 122 3332 233333 33332
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|+++.++|.
T Consensus 79 ~~~id~vv~~ag~ 91 (280)
T PRK06914 79 IGRIDLLVNNAGY 91 (280)
T ss_pred cCCeeEEEECCcc
Confidence 1378999998874
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.067 Score=47.92 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-H-HHH---HHhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-K-FDR---AKNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-~-~~~---~~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
+++++||+|+ +++|..+++.+...|+ +|+.++++++ . .+. +++.+... .+ |..+ ..+..+.+.+.. .
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 8888877543 2 222 23334322 22 2222 123333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++|++.|.
T Consensus 85 g~id~li~~ag~ 96 (254)
T PRK06114 85 GALTLAVNAAGI 96 (254)
T ss_pred CCCCEEEECCCC
Confidence 478999999874
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.069 Score=49.79 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcC---Cc-eE--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG---VT-EF--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg---~~-~v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ .++. .. .+ .|..+ .......+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD-LDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC-HHHHHHHHHHHHHhCC
Confidence 4689999988 9999999998888898 899998887765433 2332 11 11 23322 122222233321 23
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
.+|++|+++|
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 6999999887
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.06 Score=49.00 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=49.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCC--c-eE--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGV--T-EF--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~--~-~v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
.++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+. ..+++. . +. .|..+ ...+.+.+.... .++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV-EDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 4689999988 9999999988888899 89988887665433 233321 1 11 23322 122333333222 137
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 95 id~li~~Ag~ 104 (280)
T PLN02253 95 LDIMVNNAGL 104 (280)
T ss_pred CCEEEECCCc
Confidence 9999998864
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.061 Score=51.32 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH-HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-.+.+|||+|+|-+|..++.-+...|..+|+++.++.+|. ++++++|+. ++..++ ..+.+. .+|+||-+
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~e----l~~~l~-----~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALEE----LLEALA-----EADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHHH----HHHhhh-----hCCEEEEe
Confidence 4789999999999999999999999988999999988875 567788853 222221 222221 48999999
Q ss_pred CCCHHHH---HHHHHHhccCCc-eEEEEccC
Q 016978 272 IGNVSVM---RAALECCHKGWG-TSVIVGVA 298 (379)
Q Consensus 272 ~g~~~~~---~~~~~~l~~~~G-~iv~~g~~ 298 (379)
++.++.+ ......++.... -+++++.+
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 8875421 222233333213 45667664
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.16 Score=46.77 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
+++++||+|+ |++|..+++.+...|+ +|+.+.++. ++.+.+ ++.+... . .|..+ ..+....+.+..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 5689999988 9999999999999999 788775432 222222 2334322 1 23322 123333333332
Q ss_pred CCCccEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 262 DGGVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+++|+++++.|.. .+++.++..+..+ |++|.++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~ 187 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSI 187 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCc
Confidence 23789999887631 1234444555665 899888654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.072 Score=47.91 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh---cCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~---lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
++.++||+|+ |.+|...+..+...|+ +|+.++++++..+.+++ .+... . .|..+ ..+....+.+.. .+.
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4689999988 9999999999988999 89999887754443332 23321 1 22222 122333333221 237
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|.++|.
T Consensus 83 id~vi~~ag~ 92 (263)
T PRK08226 83 IDILVNNAGV 92 (263)
T ss_pred CCEEEECCCc
Confidence 8999998883
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.075 Score=49.12 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc-----CCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF-----GVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l-----g~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.|++|||+|+ |++|..+++.+...|+ +|+.+.++.++.+.+ +++ +... + .|..+ ..+..+.+.+..
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS-LASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHhh
Confidence 5789999988 9999999998888899 888888887664322 111 1211 2 23222 123333333332
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 2379999998873
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.076 Score=48.14 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=48.7
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce----EeCCCCCCchHHHHHHHhc--CCCc
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE----FVNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~----v~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ +..+... ..|..+ .....+.+.+.. .+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD-YDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC-HHHHHHHHHHHHHhcCCC
Confidence 6899988 9999999999888999 788888877664433 2334322 123332 122222222221 2369
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++|+++|.
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.25 Score=41.08 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|-++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.|+..+ + +..+.+.+ .|+||-|..+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~-~------s~~e~~~~-----~dvvi~~v~~~ 68 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA-D------SPAEAAEQ-----ADVVILCVPDD 68 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE-S------SHHHHHHH-----BSEEEE-SSSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh-h------hhhhHhhc-----ccceEeecccc
Confidence 368899999999999998889999 89999999999988888775322 1 12222222 57777777775
Q ss_pred HHHHHHHH------HhccCCceEEEEcc
Q 016978 276 SVMRAALE------CCHKGWGTSVIVGV 297 (379)
Q Consensus 276 ~~~~~~~~------~l~~~~G~iv~~g~ 297 (379)
......+. .+.++ ..++.++.
T Consensus 69 ~~v~~v~~~~~i~~~l~~g-~iiid~sT 95 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPG-KIIIDMST 95 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TT-EEEEE-SS
T ss_pred hhhhhhhhhhHHhhccccc-eEEEecCC
Confidence 54444333 34443 45555544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.074 Score=47.63 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=49.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCce-Ee--CCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTE-FV--NPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.|+++||+|+ |++|.++++.+...|+ +|+.+++.+. ..+.+++++... .+ |..+ ..+..+.+.+.. .+.+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFGHI 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCCC
Confidence 4789999988 9999999999999999 8888765432 223334444322 12 2222 123333333322 2379
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 87 D~li~~Ag~ 95 (253)
T PRK08993 87 DILVNNAGL 95 (253)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=46.38 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=67.1
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc-
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~- 261 (379)
...+..+.++||-+|.| .|..++.+++.++ ..+|++++.+++..+.+++ .|...-+.... .+..+.+.++.
T Consensus 62 ~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~--gda~~~L~~l~~ 138 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ--SDALSALDQLLN 138 (234)
T ss_pred HHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHHh
Confidence 34456678899999874 5777777787764 4499999999988777764 44432111111 23334444432
Q ss_pred ---CCCccEEEEcCC---CHHHHHHHHHHhccCCceEEEE
Q 016978 262 ---DGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ---~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.||+||--.. -...+..++..++++ |.++.-
T Consensus 139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~d 177 (234)
T PLN02781 139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAFD 177 (234)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence 237999884332 245688889999996 887754
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.096 Score=46.65 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|+|+|+|++|..+++.+..+|..+++.+|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35789999999999999999999999899988754
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.087 Score=47.88 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcC---CceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFG---VTEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg---~~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
...+++++|+|+|++|.+++..+...|+ +|+++++++++.+.+ +.+. ....+..+ +.....+|+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~-----------~~~~~~~Di 181 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD-----------ELPLHRVDL 181 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh-----------hhcccCccE
Confidence 3457899999999999999988888898 899998887765433 3332 11111111 111126899
Q ss_pred EEEcCCCHH--HH---HHHHHHhccCCceEEEEc
Q 016978 268 SFECIGNVS--VM---RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 268 vid~~g~~~--~~---~~~~~~l~~~~G~iv~~g 296 (379)
||+|++... .. ......++++ ..++.+.
T Consensus 182 vInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~ 214 (270)
T TIGR00507 182 IINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMV 214 (270)
T ss_pred EEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEec
Confidence 999987631 01 1123446664 5666553
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.081 Score=47.38 Aligned_cols=78 Identities=27% Similarity=0.351 Sum_probs=49.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCc--eE--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT--EF--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~--~v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
++++||+|+ |.+|...+..+...|+ +|++++++.++.+.+. ++... ++ .|..+ ...+...+.+.. .+++|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD-AASLAAALANAAAERGPVD 79 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 568999988 9999998888888898 8999988877655433 23211 12 22222 122223333321 13689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+++.+.|.
T Consensus 80 ~vi~~ag~ 87 (257)
T PRK07074 80 VLVANAGA 87 (257)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.063 Score=47.96 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++++|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. +.+... . .|..+ ...+.+.+.... .+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYAVETFG 80 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4679999988 9999999998888899 8999988877654332 223322 1 22222 123333333321 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|.+++.
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.069 Score=47.47 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH----HHhcCCce-Ee--CCCCCCchHHHHHHHhcC--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR----AKNFGVTE-FV--NPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~----~~~lg~~~-v~--~~~~~~~~~~~~i~~~~~--~ 263 (379)
.+.+|||+|+ |.+|...+..+...|+ +|++++++.++.+. +++.+... ++ |..+ ...+.+.+.+... +
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4679999988 9999999988888899 89999888654332 23333322 22 2222 1233333333221 3
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|+|+.+.|.
T Consensus 83 ~~d~vi~~ag~ 93 (251)
T PRK12826 83 RLDILVANAGI 93 (251)
T ss_pred CCCEEEECCCC
Confidence 68999998755
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.043 Score=49.38 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.|+++||+|+ +++|...+..+...|+ +|+.+++++++.. .... ..|..+ ..+..+.+.+.. .+.+|+++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~-~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN-KEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4789999988 9999999999999999 8998887765422 1111 123332 123333333322 23699999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 78 ~~Ag~ 82 (258)
T PRK06398 78 NNAGI 82 (258)
T ss_pred ECCCC
Confidence 98874
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.08 Score=47.23 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=50.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceE---eCCCCCCchHHHHHHHhcC--CCccEEE
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEF---VNPKDHDKPIQQVLVDLTD--GGVDYSF 269 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v---~~~~~~~~~~~~~i~~~~~--~g~d~vi 269 (379)
+|+|+|+ |.+|..++..+...|+ +|+++++++++.+.+.+ ++.... .|..+ ...+.+.+.+... +++|+++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~id~vi 79 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWRNIDVLV 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 6899988 9999999999989999 89999998877665543 343321 22222 1233333333221 3799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
.++|.
T Consensus 80 ~~ag~ 84 (248)
T PRK10538 80 NNAGL 84 (248)
T ss_pred ECCCc
Confidence 98764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.066 Score=48.08 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCce-Ee--CCCCCCchHHHHHHHhcCCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTE-FV--NPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~-v~--~~~~~~~~~~~~i~~~~~~g 264 (379)
.++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+ .+... ++ |..+ ..++...+... +.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS-PEAREQLAAEA--GD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC-HHHHHHHHHHh--CC
Confidence 4789999988 9999999998888999 89999888776544321 23221 22 2222 12333333322 47
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+++++.|.
T Consensus 82 id~lv~~ag~ 91 (259)
T PRK06125 82 IDILVNNAGA 91 (259)
T ss_pred CCEEEECCCC
Confidence 9999998874
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.08 Score=48.01 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc---C--Cc-eEe--CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---G--VT-EFV--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l---g--~~-~v~--~~~~~~~~~~~~i~~~~-- 261 (379)
+++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.. .++ + .. .++ |..+ ..++...+.+..
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD-EDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 4689999998 9999999999999999 899998877654322 222 1 11 122 2222 123333333322
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+++|++|+++|
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 137899999887
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.086 Score=46.90 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----c--CCce-E--eCCCCCCchHHHHHHHhc--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--GVTE-F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----l--g~~~-v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
++++||+|+ |++|...++.+...|+ +|+.+++++++.+.+.+ . +... + .|..+ ...+...+.+.. .
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 568999988 9999998888888898 89888888876554322 1 2211 2 23332 133333333332 2
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++|+++|
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 37999999886
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.086 Score=48.40 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.++++||+|+|++|.+++..+...|+++|+++++++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 578999999999999999888899997799998885
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.083 Score=47.33 Aligned_cols=79 Identities=29% Similarity=0.409 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-Ee--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-FV--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+. +++... .+ |..+ .......+.+.. .+.+|
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 3678999988 9999999999998999 8999988887665443 333221 12 2222 123333333321 23689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 83 ~li~~ag~ 90 (257)
T PRK07067 83 ILFNNAAL 90 (257)
T ss_pred EEEECCCc
Confidence 99998763
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.062 Score=47.31 Aligned_cols=74 Identities=23% Similarity=0.250 Sum_probs=48.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCC-CccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDG-GVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~-g~d~vid 270 (379)
.+++|||+|+ |.+|...++.+...|+ +|+++.++.++ ...... ..|..+ ...+.+.+.+.... +.|++|.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~d~vi~ 74 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLAD-IEQTAATLAQINEIHPVDAIVN 74 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCC-HHHHHHHHHHHHHhCCCcEEEE
Confidence 3678999988 9999999999889998 89999887654 111111 123322 12333334443333 6899999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 75 ~ag~ 78 (234)
T PRK07577 75 NVGI 78 (234)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.083 Score=47.46 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=49.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEe--CCCCCCchHHHHHHHhc--CCCccE
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV--NPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~--~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
++||+|+ +++|...++.+...|+ +|+.+++++++.+.+. +.+..+.+ |..+ ..+..+.+.+.. .+++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD-KDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 6899988 9999999999988999 8999988877654332 22322222 2222 123333333322 247999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|+++|.
T Consensus 80 li~naG~ 86 (259)
T PRK08340 80 LVWNAGN 86 (259)
T ss_pred EEECCCC
Confidence 9998874
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.15 Score=44.66 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---------eCCCCCCchHHHHHHHh
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---------VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---------~~~~~~~~~~~~~i~~~ 260 (379)
.+.++.+||+.|+| .|.-++.||. .|+ .|++++.++.-.+.+. +.+.... ....+. .-+...+.++
T Consensus 34 ~~~~~~rvL~~gCG-~G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v-~~~~~D~~~l 109 (218)
T PRK13255 34 ALPAGSRVLVPLCG-KSLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI-TIYCGDFFAL 109 (218)
T ss_pred CCCCCCeEEEeCCC-ChHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCce-EEEECcccCC
Confidence 45678899999886 5777777775 799 8999999998777652 3332210 000000 0000001111
Q ss_pred ---cCCCccEEEEcCC--------CHHHHHHHHHHhccCCceEEEEc
Q 016978 261 ---TDGGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 261 ---~~~g~d~vid~~g--------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
..+.||.|+|... ....+..+.++|+++ |++.++.
T Consensus 110 ~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~~ 155 (218)
T PRK13255 110 TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLVT 155 (218)
T ss_pred CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEEE
Confidence 1136899999653 135588999999997 9755543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.096 Score=46.86 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |.+|..++..+...|+ +|+.+++++++.+.+ ++.+... . .|..+ ..++...+.+.. .+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD-EEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 5889999988 9999999988888899 899998887654432 2334322 1 23222 123333333322 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|.+.|.
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.052 Score=47.05 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=65.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc----C
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT----D 262 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~----~ 262 (379)
...-++||-+|.+ +|+.++++|+.+.- .+|+.++.++++.+.+++ .|...-+.... .+..+.+.++. .
T Consensus 43 ~~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~--gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 43 LTRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE--GDALEVLPELANDGEE 119 (205)
T ss_dssp HHT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE--S-HHHHHHHHHHTTTT
T ss_pred hcCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE--eccHhhHHHHHhccCC
Confidence 3445899999985 68889999998742 399999999998887754 45432121111 23344444432 2
Q ss_pred CCccEEE-EcCCC--HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vi-d~~g~--~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.||.|| |+.-. ...+..++.+++++ |.++.=.
T Consensus 120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN 155 (205)
T PF01596_consen 120 GQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN 155 (205)
T ss_dssp TSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred CceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence 3699988 54322 34578888999996 7776543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.062 Score=47.48 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=49.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-Ee--CCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FV--NPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.+.+|||+|+ |.+|..+++.+...|+++|++++++.++.+. .+... ++ |..+ ...+.+.+... +.+|+||
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~vi 78 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD-PASVAAAAEAA--SDVTILV 78 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC-HHHHHHHHHhc--CCCCEEE
Confidence 4688999987 9999999999999998678888887766543 22221 22 2222 12233333222 2589999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
.++|.
T Consensus 79 ~~ag~ 83 (238)
T PRK08264 79 NNAGI 83 (238)
T ss_pred ECCCc
Confidence 98876
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=44.43 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCC-CchHHHHHHHhcCCCccEEEEc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDH-DKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~-~~~~~~~i~~~~~~g~d~vid~ 271 (379)
..++||+|+ |.+|..++..+... + +|++++++.++.+.+.+ ....+++..+-. ...+.+.+... ++.|.+|.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi~~ 78 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL--GRLDVLVHN 78 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc--CCCCEEEEC
Confidence 368999988 99999888777666 6 89999888776554442 211222222211 12222222221 269999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
+|.
T Consensus 79 ag~ 81 (227)
T PRK08219 79 AGV 81 (227)
T ss_pred CCc
Confidence 875
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.093 Score=47.75 Aligned_cols=102 Identities=14% Similarity=0.259 Sum_probs=64.6
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---HHH-HHHhcCCceE--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFD-RAKNFGVTEF--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~---~~~-~~~~lg~~~v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.++++++ +.+ ..++++.... .|..+ .......+.+.. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK-PEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4789999987 4899999998888999 8888877742 222 2234454322 33333 123333333332 2
Q ss_pred CCccEEEEcCCCH--------------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV--------------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+|++++++|.. + ..+..+..+.++ |+++.++..
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~ 145 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYL 145 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecC
Confidence 4799999988731 0 245556667775 999988654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=43.70 Aligned_cols=79 Identities=27% Similarity=0.281 Sum_probs=48.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHh--cCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDL--TDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~--~~~ 263 (379)
.+.+++|+|+ +++|...+..+...|+ +|+.++++++..+.. ++.+... ++ |..+ ..++.+.+.+. ..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK-QGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 8999999888888898 899998876654322 2234332 22 2211 12222222221 124
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 93 ~iDilVnnAG~ 103 (169)
T PRK06720 93 RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEECCCc
Confidence 68888888764
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.06 Score=48.90 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCce-Ee--CCCCCCchHHHHHHHhc--CCCccE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE-FV--NPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
+++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.+ ++... .+ |..+ ...+...+.... .+++|+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD-RAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 468999988 9999999988888898 89999888877655543 22211 12 2222 123333333321 237899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
++.++|.
T Consensus 81 vi~~ag~ 87 (275)
T PRK08263 81 VVNNAGY 87 (275)
T ss_pred EEECCCC
Confidence 9999875
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.18 Score=45.34 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=66.1
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
+....+.++++||=+|+| .|..+..+++..+..+|++++.+++-.+.+++..... ++.. +.... .....+
T Consensus 24 l~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~-----d~~~~---~~~~~f 94 (258)
T PRK01683 24 LARVPLENPRYVVDLGCG-PGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA-----DIASW---QPPQAL 94 (258)
T ss_pred HhhCCCcCCCEEEEEccc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC-----chhcc---CCCCCc
Confidence 444566788999999885 4666778887765449999999999888887643221 2211 11110 112379
Q ss_pred cEEEEcCCC------HHHHHHHHHHhccCCceEEEE
Q 016978 266 DYSFECIGN------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 266 d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+|+-...- ...+..+.+.|+++ |+++..
T Consensus 95 D~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~ 129 (258)
T PRK01683 95 DLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQ 129 (258)
T ss_pred cEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEE
Confidence 998854331 35688899999997 998875
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=48.89 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.+|+|+|+|++|..++..+..+|..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999998899898753
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.068 Score=42.96 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
..+|+|.|+|++|..++..+-..|..+++.+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999999899999754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.14 Score=41.47 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
+|+|+|+|++|...+..+...|.++++.++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999999889999754
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=45.09 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999999889999876
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.1 Score=50.04 Aligned_cols=90 Identities=29% Similarity=0.386 Sum_probs=54.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh--cCCce---EeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN--FGVTE---FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~--lg~~~---v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
|+|+|+|.+|..+++.+...+- .+|++.+++.++.+.+.+ .+... .+|..+ ..+ +.++.. +.|+|++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~-l~~~~~-~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND----PES-LAELLR-GCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT----HHH-HHHHHT-TSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC----HHH-HHHHHh-cCCEEEEC
Confidence 7889999999999999887764 389999999999766653 22211 233322 222 444333 46999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEE
Q 016978 272 IGNVSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~ 294 (379)
+|.......+-.|+..+ -.++.
T Consensus 75 ~gp~~~~~v~~~~i~~g-~~yvD 96 (386)
T PF03435_consen 75 AGPFFGEPVARACIEAG-VHYVD 96 (386)
T ss_dssp SSGGGHHHHHHHHHHHT--EEEE
T ss_pred CccchhHHHHHHHHHhC-CCeec
Confidence 99854444555555554 55555
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=46.57 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|..+++.+...|+ +|+.+++++++.+.+ +..+... . .|..+ ...+...+.... .+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHhcC
Confidence 4789999988 9999999999888999 899998887664432 2223222 1 22222 123333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=45.99 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=85.9
Q ss_pred ccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC---------CchHHHHHHH
Q 016978 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH---------DKPIQQVLVD 259 (379)
Q Consensus 189 ~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~---------~~~~~~~i~~ 259 (379)
.+..-++.+||+.|+|..|+.++-.++..|+ .|...+-...+.+..+++|+..+-..++. +.+|...-.+
T Consensus 158 Aagtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 158 AAGTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred hcccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence 3445677889999999999999999999999 88888888888888888888543222211 3344443333
Q ss_pred hcC---CCccEEEEcCCC-----HH-HHHHHHHHhccCCceEEEEccCCC-CcccccCcceeee-ccEEEeee
Q 016978 260 LTD---GGVDYSFECIGN-----VS-VMRAALECCHKGWGTSVIVGVAAS-GQEISTRPFQLVT-GRVWKGTA 321 (379)
Q Consensus 260 ~~~---~g~d~vid~~g~-----~~-~~~~~~~~l~~~~G~iv~~g~~~~-~~~~~~~~~~~~~-~~~i~~~~ 321 (379)
+.. .++|+||-+.=- |. .-..+...++++ +.+|.+....+ +..+.-+...... +.+|.|..
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~ 308 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT 308 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence 221 279999976422 22 246778889997 99999875433 2233222222222 77777754
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.22 Score=44.99 Aligned_cols=102 Identities=22% Similarity=0.311 Sum_probs=59.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-------------------H----HHHHHhcCCce-EeCCCCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-------------------K----FDRAKNFGVTE-FVNPKDH 249 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-------------------~----~~~~~~lg~~~-v~~~~~~ 249 (379)
.+.+|+|+|+|++|..++..+-..|..+++.++...- | .+.++++..+. +....+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 4689999999999999999999999889999875421 1 11222233221 1111110
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
- ..+.+.++....+|+||||..+...-..+...+....=.++..|.
T Consensus 109 -i-~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 109 -I-TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred -c-ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 0 011222233336999999999855444455555553134454544
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=45.81 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45899999999999999999999999889888754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.034 Score=49.52 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=66.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCce-E-eCCCCC-CchHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTE-F-VNPKDH-DKPIQQVL 257 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~-v-~~~~~~-~~~~~~~i 257 (379)
+....++.||++||=.|.| .|-++..|++..| -.+|+..+.++++.+.+++ .|... + +...+. ...+
T Consensus 32 I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~---- 106 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF---- 106 (247)
T ss_dssp HHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG------
T ss_pred HHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc----
Confidence 5567789999999998764 4666777777776 3489999999998877753 55532 1 212220 0111
Q ss_pred HHhcCCCccEEE-EcCCCHHHHHHHHHHh-ccCCceEEEEcc
Q 016978 258 VDLTDGGVDYSF-ECIGNVSVMRAALECC-HKGWGTSVIVGV 297 (379)
Q Consensus 258 ~~~~~~g~d~vi-d~~g~~~~~~~~~~~l-~~~~G~iv~~g~ 297 (379)
.+.....+|.|| |--.....+..+.+.| +++ |+++.+..
T Consensus 107 ~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP 147 (247)
T PF08704_consen 107 DEELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP 147 (247)
T ss_dssp STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred cccccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence 111123688765 6655567899999999 886 99998854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.092 Score=47.70 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|..++..+...|+ +|+.+++++++.+.+. +.+... . .|..+ .......+.+.. .+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999989999 8999888776543322 223321 1 22222 122333333322 24
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
.+|++|+++|
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7999999887
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.23 Score=38.49 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=53.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|...+. -+. .-.+.+++..-..++.++-+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd~---~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GDA---TDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-T---TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-ccc---hhhhHHhhcCccccCEEEEccCCHH
Confidence 6788999999999999999665 899999999999999998865333 322 1122344432237899988887744
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.1 Score=48.94 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|+|+|+|++|..+++.+...|..+++.++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999999899999875
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.012 Score=48.32 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=57.2
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC----CchHHHHHHHhcCCCccEEEEcCC
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH----DKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~----~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
|+|+|+|++|.+.+..++..|. .|..+.+.+ +.+.+++.|........+. ....... ....+.+|+||-|+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence 6899999999998888888999 899998887 7777776664321111000 0000000 111237999999987
Q ss_pred CHH---HHHHHHHHhccCCceEEEEcc
Q 016978 274 NVS---VMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 274 ~~~---~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.+ .++.+...+.++ ..++.+.+
T Consensus 77 a~~~~~~l~~l~~~~~~~-t~iv~~qN 102 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLDPN-TTIVSLQN 102 (151)
T ss_dssp GGGHHHHHHHHCTGEETT-EEEEEESS
T ss_pred ccchHHHHHHHhhccCCC-cEEEEEeC
Confidence 633 344444445553 56776644
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.14 Score=45.32 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=48.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eE--eCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EF--VNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v--~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+.+.. .. .|..+ ..++.+.+.+.. ...|.++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~-~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD-HPGTKAALSQLP-FIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC-HHHHHHHHHhcc-cCCCEEEEc
Confidence 57899988 9999998888888899 899999988887666543321 11 23322 233444444332 245776665
Q ss_pred CC
Q 016978 272 IG 273 (379)
Q Consensus 272 ~g 273 (379)
+|
T Consensus 79 ag 80 (240)
T PRK06101 79 AG 80 (240)
T ss_pred Cc
Confidence 54
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.073 Score=53.22 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce---EeCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE---FVNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~---v~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+++++||+|+ +++|.++++.+...|+ +|+.++++.++.+.+ ++++... ..|..+ ..++.+.+.+.. .+++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCCCC
Confidence 5789999988 9999999999999999 899998888776544 4455432 223332 233333333322 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ~li~nag~ 89 (520)
T PRK06484 82 VLVNNAGV 89 (520)
T ss_pred EEEECCCc
Confidence 99998764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.09 Score=47.14 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=49.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h----cCCc--eEe--CCCCCCchHHHHHHHhc--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N----FGVT--EFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~----lg~~--~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
+++|||+|+ |.+|...+..+...|+ +|+.++++.++.+.+. + .+.. +.+ |..+ ..+....+.+.. .
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS-EQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 578999988 9999999998888999 8999988776543332 1 2211 122 2222 122333333321 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 478999998874
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.23 Score=45.19 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eE-e-CCCCC--CchHHHHHHHhcCCCccEEE-
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EF-V-NPKDH--DKPIQQVLVDLTDGGVDYSF- 269 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v-~-~~~~~--~~~~~~~i~~~~~~g~d~vi- 269 (379)
++|||+|.| -|-.+-.++++...++++.++.+++=.++++++-.. +. . |.+-. -.|-.+.+++... ++|+||
T Consensus 78 k~VLiiGgG-dG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGG-DGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV 155 (282)
T ss_pred CeEEEECCC-ccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence 699999764 344555778888788999999999999999874321 10 0 11100 1344555655543 799877
Q ss_pred EcCCC---------HHHHHHHHHHhccCCceEEEE
Q 016978 270 ECIGN---------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 270 d~~g~---------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+.-. .++.+.+.++|+++ |.++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence 44332 67899999999996 999877
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.076 Score=54.73 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHHhcCCceEeCCCCC-C
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---------------------KFDRAKNFGVTEFVNPKDH-D 250 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~---------------------~~~~~~~lg~~~v~~~~~~-~ 250 (379)
..+++|+|+|+|+.|+.++..+...|+ +|++++..+. ..+.++++|.+...+..-. +
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 358999999999999999999999999 7888876532 3556677887544332110 0
Q ss_pred chHHHHHHHhcCCCccEEEEcCCC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
..+. .+. ..+|.||.++|.
T Consensus 404 i~~~-~~~----~~~DavilAtGa 422 (654)
T PRK12769 404 ISLE-SLL----EDYDAVFVGVGT 422 (654)
T ss_pred CCHH-HHH----hcCCEEEEeCCC
Confidence 1111 111 268999998886
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=47.25 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 192 VEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 192 ~~~g~~VlI~Gag~-vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
--.|++|+|+|+|. +|...++++...|+ +|+.+.+..+ ++.+.+ ..+|+|+.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~---------------------~L~~~~-----~~aDIvI~ 208 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQ---------------------NLPELV-----KQADIIVG 208 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCch---------------------hHHHHh-----ccCCEEEE
Confidence 35789999999976 99999999999999 8888744211 111111 25899999
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++|.+..+. .+.++++ ..++.+|..
T Consensus 209 AtG~~~~v~--~~~lk~g-avViDvg~n 233 (283)
T PRK14192 209 AVGKPELIK--KDWIKQG-AVVVDAGFH 233 (283)
T ss_pred ccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence 998766443 3558885 888888764
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.1 Score=46.96 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=48.0
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ + ++|.++++.+...|+ +|+.+.++++..+.+ ++.|.... .|..+ ..+..+.+.+.. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN-PKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 4 799999888888999 788877764222222 23343332 23333 123333333322 2
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+.+|++++++|
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 47999999876
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.26 Score=43.85 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHH----HHHHhcCCce-E--eCCCCCCchHHHHHHHhcC--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKF----DRAKNFGVTE-F--VNPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~----~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~ 263 (379)
+.+|||+|+ |.+|...+.-+...|+ +++.+.+ +.++. ..+++.+... . .|..+ ..++...+.+... +
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHcC
Confidence 689999988 9999998888888999 6665543 32222 2233344322 2 23222 1223333333221 3
Q ss_pred CccEEEEcCCC----------H---------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 264 GVDYSFECIGN----------V---------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 264 g~d~vid~~g~----------~---------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
++|++|.++|. . ...+.+...++.. |+++.++...
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence 78999999873 1 1134455556675 8999887643
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.1 Score=46.33 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |.+|..++..+...|+ +|+.++++.++.+.+. +.+... ++ |..+ ...+.+.+.+.. .+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999988999 8999988876654332 223222 22 2222 122333333322 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++|.++|
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 6899999987
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.097 Score=46.66 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=50.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+++|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ .+... + .|..+ ..++...+.+.. .++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhcCC
Confidence 358999988 9999999988888999 89999888776654433 22221 1 23322 123333333321 236
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
.|+||.+.+.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999988764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.1 Score=46.89 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=49.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH---HHHhcCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD---RAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~---~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
.+++|||+|+ |.+|...++.+...|+ +|+.+.++++..+ .+.+.+.+. + .|..+ .......+.+.. .++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHcCC
Confidence 5789999988 9999999999999999 7888877632112 222334322 1 23222 122323333322 236
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+++++.|.
T Consensus 92 id~li~~ag~ 101 (258)
T PRK06935 92 IDILVNNAGT 101 (258)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.21 Score=44.12 Aligned_cols=34 Identities=41% Similarity=0.545 Sum_probs=30.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
..+|+|+|.|++|..++..+-..|..+++.+|..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999999999999999999999899999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.58 Score=42.95 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=54.6
Q ss_pred CEEEEEcCChHHHH-HHHHHHHcCCCeEEE-EcCChh--HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 196 SIVAVFGLGTVGLA-VAEGAKAAGASRVIG-IDIDPK--KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Gag~vG~~-a~~la~~~g~~~vi~-v~~~~~--~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-+|.|+|.|.+|.. +..+.+.-+. ++.+ ++.+++ .+.+++++|....+ .++.+.+.......+|+||++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~------~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA------EGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc------CCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999987 4444443456 5554 444443 34667788864322 123333332111369999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++.......+..++.. |..+..-.
T Consensus 78 T~a~~H~e~a~~a~ea--Gk~VID~s 101 (302)
T PRK08300 78 TSAGAHVRHAAKLREA--GIRAIDLT 101 (302)
T ss_pred CCHHHHHHHHHHHHHc--CCeEEECC
Confidence 9986555555555554 55554433
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=47.36 Aligned_cols=80 Identities=26% Similarity=0.231 Sum_probs=49.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hHHH-HHH---hcCCceE---eCCCCCCchHHH
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---------KKFD-RAK---NFGVTEF---VNPKDHDKPIQQ 255 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~---------~~~~-~~~---~lg~~~v---~~~~~~~~~~~~ 255 (379)
..++++||+|+ +++|...++.+...|+ +|+.++++. ++.+ .+. +.+.... .|..+ ..+..+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~ 81 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD-WDGAAN 81 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC-HHHHHH
Confidence 35789999988 9999999998888999 788776543 3322 222 2343322 22222 123333
Q ss_pred HHHHhc--CCCccEEEEcCCC
Q 016978 256 VLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 256 ~i~~~~--~~g~d~vid~~g~ 274 (379)
.+.+.. .+.+|++++++|.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 333322 2479999998874
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=45.82 Aligned_cols=79 Identities=23% Similarity=0.214 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce-Ee--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
++.++||+|+ |.+|..++..+...|+ .|+..+++.++.+.+ ..++... ++ |..+ ...+.+.+.+.. .+++|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id 82 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD-RDEVKALGQKAEADLEGVD 82 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999988 9999999998888998 788887776665543 3344322 22 2222 122222222221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
.+|.++|.
T Consensus 83 ~vi~~ag~ 90 (245)
T PRK12936 83 ILVNNAGI 90 (245)
T ss_pred EEEECCCC
Confidence 99999874
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=43.37 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=61.0
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC--ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|.|+|| |-+|...++=|..+|. .|+++.++++|....+..-+ ..+++.. ...+ .+ .|+|+||++.|
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~----~~a~---~l--~g~DaVIsA~~ 71 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLT----SLAS---DL--AGHDAVISAFG 71 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChh----hhHh---hh--cCCceEEEecc
Confidence 5788998 9999999999999999 89999999998755322111 0122211 1111 11 27999999877
Q ss_pred CH---------HHHHHHHHHhcc-CCceEEEEccCC
Q 016978 274 NV---------SVMRAALECCHK-GWGTSVIVGVAA 299 (379)
Q Consensus 274 ~~---------~~~~~~~~~l~~-~~G~iv~~g~~~ 299 (379)
.. ...+.++..++. +--++..+|...
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 63 224456666666 224777787653
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=48.23 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg 239 (379)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+..+.+|
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g 235 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG 235 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence 57899999999999999999999999 9999988764334334444
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.11 Score=45.82 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=50.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-EeCCCCC-CchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FVNPKDH-DKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~~~~~~-~~~~~~~i~~~~--~~g 264 (379)
.+.++||+|+ |.+|..++..+...|+ +|+.+++++++.+.+ +..+... ++..+-. ...+.+.++... .++
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999988 9999999988888999 899998887654432 2233222 2222111 123333333322 237
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|.++|.
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999998764
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.28 Score=44.71 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=45.4
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHHhcCCceEeCCC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~--~~~~~~~~~~~lg~~~v~~~~ 247 (379)
...+.++||++|+=--+|..|.+++.+|+.+|++-+++.. -+.+|+++++.+|+..+....
T Consensus 54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~ 116 (300)
T COG0031 54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG 116 (300)
T ss_pred HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence 4556699999554434499999999999999994444443 367899999999997665443
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.12 Score=46.66 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=48.3
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
+++++||+|+ +++|.+.++.+...|+ +|+.+.+.++..+.++ +.+....+ |..+ ..+....+.+.. .
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS-DDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC-HHHHHHHHHHHHHHh
Confidence 5789999984 5899999998889999 8887765543333332 23432222 2222 233333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 83 g~iD~lVnnAG~ 94 (261)
T PRK08690 83 DGLDGLVHSIGF 94 (261)
T ss_pred CCCcEEEECCcc
Confidence 479999998764
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.12 Score=47.81 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 4789999988 9999999999999999 88888776
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=42.40 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
..+.+|+|+|+|.+|...++.+...|..+|++++++.++.+. +++++... ..... +..+. -.++|+|+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL----DLEEL-----LAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec----chhhc-----cccCCEEEe
Confidence 457899999999999999998888874489999888876554 44555421 01111 11111 136999999
Q ss_pred cCCCH
Q 016978 271 CIGNV 275 (379)
Q Consensus 271 ~~g~~ 275 (379)
|++..
T Consensus 88 ~~~~~ 92 (155)
T cd01065 88 TTPVG 92 (155)
T ss_pred CcCCC
Confidence 98773
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.09 Score=47.17 Aligned_cols=75 Identities=24% Similarity=0.202 Sum_probs=47.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
+|++|||+|+ |++|...++.+...|+ +|+++++++++. . .-.... ..|..+ .....+.+.+.. .+++|+++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~--~-~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~vi 82 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD--L-PEGVEFVAADLTT-AEGCAAVARAVLERLGGVDILV 82 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh--c-CCceeEEecCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 5789999988 9999999999888999 899998875531 1 111111 123222 122222222221 23799999
Q ss_pred EcCC
Q 016978 270 ECIG 273 (379)
Q Consensus 270 d~~g 273 (379)
+++|
T Consensus 83 ~~ag 86 (260)
T PRK06523 83 HVLG 86 (260)
T ss_pred ECCc
Confidence 9887
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=44.54 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=58.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh--cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN--FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~--lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+++|.|+|.+|...++.+...|. .|++++.++++.+...+ ++. +++.-+. .-.+.+++.--..+|+++-++|.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~---t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGDA---TDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEecC---CCHHHHHhcCCCcCCEEEEeeCC
Confidence 67899999999999999999999 89999999998776333 554 3443332 12334555533489999998888
Q ss_pred HHHHHHHHHHhc
Q 016978 275 VSVMRAALECCH 286 (379)
Q Consensus 275 ~~~~~~~~~~l~ 286 (379)
.. .+..+..+.
T Consensus 77 d~-~N~i~~~la 87 (225)
T COG0569 77 DE-VNSVLALLA 87 (225)
T ss_pred CH-HHHHHHHHH
Confidence 33 444444333
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.17 Score=45.98 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=65.1
Q ss_pred ccccccchhhhhhhhhccCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
..+||+....+. +++..++ -.|++|+|+|.| .+|.-+++++...|+ +|+.+....
T Consensus 135 ~~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t--------------------- 191 (285)
T PRK14191 135 GFVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT--------------------- 191 (285)
T ss_pred CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc---------------------
Confidence 345655554444 4455454 369999999985 999999999999999 777762211
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.++.+.++ .+|+|+-++|.+.++. -..++++ ..++.+|..
T Consensus 192 ~~l~~~~~-----~ADIvV~AvG~p~~i~--~~~vk~G-avVIDvGi~ 231 (285)
T PRK14191 192 KDLSFYTQ-----NADIVCVGVGKPDLIK--ASMVKKG-AVVVDIGIN 231 (285)
T ss_pred HHHHHHHH-----hCCEEEEecCCCCcCC--HHHcCCC-cEEEEeecc
Confidence 12222222 3899999999977654 3457886 889999864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.1 Score=47.13 Aligned_cols=106 Identities=16% Similarity=0.299 Sum_probs=73.6
Q ss_pred hhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHH
Q 016978 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQ 254 (379)
Q Consensus 182 a~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~ 254 (379)
++..+.++.+++||++||=+|+| =|-+++.+|+..|+ +|++++-|++..+.+++ .|... +...+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d------- 130 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD------- 130 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc-------
Confidence 34456788999999999999985 36667778888899 99999999998776654 55541 11111
Q ss_pred HHHHHhcCCCccEEEE-----cCCC---HHHHHHHHHHhccCCceEEEEccCCC
Q 016978 255 QVLVDLTDGGVDYSFE-----CIGN---VSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 255 ~~i~~~~~~g~d~vid-----~~g~---~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
.+.+ .+.||-|+. -.|. ++.+..+.+.|+++ |++.+......
T Consensus 131 --~rd~-~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~ 180 (283)
T COG2230 131 --YRDF-EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGP 180 (283)
T ss_pred --cccc-ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCC
Confidence 1111 124776653 2333 57789999999997 99988766543
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.47 Score=42.25 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHH-HH---HhcCCceE---eCCCCC--CchHHHHHHHh--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFD-RA---KNFGVTEF---VNPKDH--DKPIQQVLVDL-- 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~-~~---~~lg~~~v---~~~~~~--~~~~~~~i~~~-- 260 (379)
.++++||+|+ |++|.++++.+...|+ +|+.+. +.+++.+ .. ++.+.... .|..+. ...+.+.+.+.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 4789999988 9999999999999999 777653 4444332 22 22232211 122220 01122222221
Q ss_pred --cC-CCccEEEEcCCCH----------H---------------HHHHHHHHhccCCceEEEEccCC
Q 016978 261 --TD-GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 261 --~~-~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.. +++|++++++|.. + +++.++..+++. |+++.++...
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~ 147 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAA 147 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCcc
Confidence 11 2699999988731 0 133455666775 8999887653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.31 Score=43.76 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc-CC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT-DG 263 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~-~~ 263 (379)
++......++++||=+|+|. |..+..+++.. +. +|++++.+++-.+.+++.+.+.+. . +.. +.. .+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-~-----d~~----~~~~~~ 88 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-G-----DVR----DWKPKP 88 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-c-----Chh----hCCCCC
Confidence 44556677889999998864 67777888775 55 899999999988888876654322 1 111 111 23
Q ss_pred CccEEEEcCC-----C-HHHHHHHHHHhccCCceEEEE
Q 016978 264 GVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.||+|+-... . ...+..+.+.|+++ |+++..
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~ 125 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ 125 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence 7999986432 1 45678889999997 998865
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.095 Score=45.28 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999889999877
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=46.63 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=47.6
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ + ++|.++++.+...|+ +|+.++++++..+.+++ .+....+ |..+ ..+....+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE-DASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC-HHHHHHHHHHHHhhc
Confidence 5789999988 3 799998888888999 78887776321222222 2222222 3222 233333333332 2
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+.+|++++++|
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 47999999987
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.21 Score=44.15 Aligned_cols=34 Identities=35% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
..+|+|+|+|++|..++..+..+|..+++.+|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5899999999999999999999999888888643
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.17 Score=46.03 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hHHHH-HHhcCCceEe--CCCCCCchHHHHHHHhc-
Q 016978 192 VEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP---KKFDR-AKNFGVTEFV--NPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~---~~~~~-~~~lg~~~v~--~~~~~~~~~~~~i~~~~- 261 (379)
.-.++++||+|+ +++|.+.+..+...|+ +|+.+.+++ ++.+. .++++....+ |..+ ..+..+.+.+..
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~ 84 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD-EASIDAVFETLEK 84 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC-HHHHHHHHHHHHH
Confidence 345789999987 5899999999989999 888876653 23322 2344532222 2222 123333333322
Q ss_pred -CCCccEEEEcCC
Q 016978 262 -DGGVDYSFECIG 273 (379)
Q Consensus 262 -~~g~d~vid~~g 273 (379)
.+.+|++++++|
T Consensus 85 ~~g~iD~lv~nAG 97 (272)
T PRK08159 85 KWGKLDFVVHAIG 97 (272)
T ss_pred hcCCCcEEEECCc
Confidence 247999999876
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=47.01 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=49.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-------H----HHHHhcCCce-E--eCCCCCCchHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------F----DRAKNFGVTE-F--VNPKDHDKPIQQVLV 258 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-------~----~~~~~lg~~~-v--~~~~~~~~~~~~~i~ 258 (379)
.++++||+|+ |.+|..++..+...|+ +|++++++.++ + +.+++.+... + .|..+ .....+.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHH
Confidence 4689999988 9999999998888999 88888876432 1 1122334332 1 23322 122333333
Q ss_pred Hhc--CCCccEEEEcCCC
Q 016978 259 DLT--DGGVDYSFECIGN 274 (379)
Q Consensus 259 ~~~--~~g~d~vid~~g~ 274 (379)
+.. .+.+|++|+++|.
T Consensus 83 ~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 221 1379999998874
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.21 Score=47.67 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++....+..++.|+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence 58899999999999999999999999 89999877544444444443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=44.53 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=59.2
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.+.....++.+||-+|+| .|..+..+++ .|. +|++++.+++-.+.+++ .+....... .+... ... .
T Consensus 23 ~~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~----~d~~~--~~~-~ 92 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPLRTDA----YDINA--AAL-N 92 (195)
T ss_pred HHHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEe----ccchh--ccc-c
Confidence 334444556789999885 4666666665 477 89999999887766543 232211100 11100 011 2
Q ss_pred CCccEEEEcCC-----C---HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vid~~g-----~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.+|+|+.... . ...+..+.+.|+++ |.++.+.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence 36999875421 1 35678888899997 9965553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=45.82 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce--E--eCCCC-CCchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F--VNPKD-HDKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~--v--~~~~~-~~~~~~~~i~~~~ 261 (379)
..++.+|||+|+ |.+|...++.+...|+ +|++++++.++.+.+ ++.+... + .+.+. ...++.+.+..+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 457899999988 9999998888888899 899998887654332 2333221 2 22221 1123333333222
Q ss_pred C--CCccEEEEcCCC
Q 016978 262 D--GGVDYSFECIGN 274 (379)
Q Consensus 262 ~--~g~d~vid~~g~ 274 (379)
. +.+|.+|.+++.
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 1 368999988764
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.089 Score=47.28 Aligned_cols=97 Identities=15% Similarity=-0.024 Sum_probs=64.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEEE-Ec
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSF-EC 271 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~vi-d~ 271 (379)
-++|||+|+|- |.++-.++|+- .+|+.++.+++-.++++++-... .++... ..+...+.+...+.+|+|| |+
T Consensus 73 pk~VLIiGGGD-Gg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR--v~l~~~~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 73 LKEVLIVDGFD-LELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKN--FTHAKQLLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCeEEEEcCCc-hHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCC--EEEeehhhhccCCcCCEEEEcC
Confidence 49999997643 44455777775 38999999999888888733211 111111 1222233343334799866 76
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.-+++..+.+.++|+++ |.++.-+.
T Consensus 148 ~~~~~fy~~~~~~L~~~-Gi~v~Qs~ 172 (262)
T PRK00536 148 EPDIHKIDGLKRMLKED-GVFISVAK 172 (262)
T ss_pred CCChHHHHHHHHhcCCC-cEEEECCC
Confidence 77778889999999997 99987643
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=45.49 Aligned_cols=35 Identities=40% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|+|+|+|++|..++..+...|..+++.+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35789999999999999999999999899998743
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.091 Score=45.82 Aligned_cols=97 Identities=22% Similarity=0.210 Sum_probs=62.3
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~ 260 (379)
....+++++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++ .+... ++..+. .+ ..
T Consensus 71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~-----~~---~~ 139 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG-----WK---GW 139 (212)
T ss_pred HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc-----cc---CC
Confidence 4566788999999998852 55555666653 3 89999999887665553 34432 121111 00 11
Q ss_pred c-CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 261 T-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 261 ~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
. .+.||.|+-..........+...|+++ |+++..
T Consensus 140 ~~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~ 174 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAP 174 (212)
T ss_pred CcCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEE
Confidence 1 137998886555556667788999997 998754
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=46.31 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=48.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE-e--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF-V--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+|||+|+ |.+|..++..+...|+ +|+.++++.++.+.+ ++.+.+.. + |..+ ..++.+.+.... .+++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD-YSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 6899988 9999999988888899 888888887765432 22333322 1 2222 122333333222 23799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99998874
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.17 Score=46.04 Aligned_cols=99 Identities=21% Similarity=0.325 Sum_probs=59.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc-CCCcc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT-DGGVD 266 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~-~~g~d 266 (379)
++++||+|+|++|..++..+. .|+ +|+.+++++++.+.+ ++.|... + .|..+ ...+...+.+.. .+++|
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS-RESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHhcCCCC
Confidence 467889999999999888875 788 899998887665432 2234322 2 23332 123333333321 24799
Q ss_pred EEEEcCCCH------------------HHHHHHHHHhccCCceEEEEcc
Q 016978 267 YSFECIGNV------------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 267 ~vid~~g~~------------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++++++|.. .+++.+...+.++ |+++.++.
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-g~iv~isS 126 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPG-GAGVVIAS 126 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhC-CCEEEEEe
Confidence 999998741 1134444555665 77776654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=45.63 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=47.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHH----HHhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDR----AKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~----~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++|||+|+ |.+|..+++.+...|+ +|+.+. ++.++.+. ++..+... . .|..+ .......+.+.. .+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD-LPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 578999988 9999999999999999 777664 34443322 23345332 2 23322 122222222221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|.++|.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.17 Score=45.53 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+ ++.+... . .|..+ .......+.+.. .+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 5689999988 9999998888888899 788888887665433 2334332 1 22222 122222232221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++++++|.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999998874
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.16 Score=45.40 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|...+..+...|+ +++.+++++++.+.+ ++.+.+. + .|..+ ..+..+.+.... .+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4799999988 9999999998888999 788887777655433 2233322 2 23322 122333333321 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 78999998874
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=49.02 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
-.|.+|.|.|.|.+|..+++.+..+|+ +|++++.+..
T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 489999999999999999999999999 8888877665
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.14 Score=48.91 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|+|+|+|++|..++..+...|..+++.++.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999899999876
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.23 Score=46.61 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 58999999999999999999999999 89999876543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.28 Score=43.76 Aligned_cols=100 Identities=17% Similarity=0.298 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc----
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT---- 261 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~---- 261 (379)
+...-++||-+|.+ +|+.++.+|+.++- .+++.++.++++.+.+++ .|...-+.... .+..+.+.++.
T Consensus 76 ~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~--G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 76 KLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE--GPALPVLDQMIEDGK 152 (247)
T ss_pred HHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe--ccHHHHHHHHHhccc
Confidence 44556789999873 68888899988742 389999999988777654 45433222221 33444555542
Q ss_pred -CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEE
Q 016978 262 -DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 262 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~ 294 (379)
.+.||.||--+-. ...+..++.+++++ |.++.
T Consensus 153 ~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~ 188 (247)
T PLN02589 153 YHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY 188 (247)
T ss_pred cCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence 2479998843222 35578889999996 77663
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.29 Score=47.03 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=51.5
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH-------HHHhc-CCceE-eCCCCCCchHHHHHHH
Q 016978 190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-------RAKNF-GVTEF-VNPKDHDKPIQQVLVD 259 (379)
Q Consensus 190 ~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~-------~~~~l-g~~~v-~~~~~~~~~~~~~i~~ 259 (379)
.+-..+.+|||+|+ |.+|..++..+...|+ +|+++.++..+.+ ..... ++..+ .|..+ ...+...++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~ 132 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD-ADSLRKVLFS 132 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC-HHHHHHHHHH
Confidence 34556789999988 9999999999888999 8999888765321 11112 22222 23332 1233333333
Q ss_pred hcCCCccEEEEcCCC
Q 016978 260 LTDGGVDYSFECIGN 274 (379)
Q Consensus 260 ~~~~g~d~vid~~g~ 274 (379)
. ..++|+||+|++.
T Consensus 133 ~-~~~~D~Vi~~aa~ 146 (390)
T PLN02657 133 E-GDPVDVVVSCLAS 146 (390)
T ss_pred h-CCCCcEEEECCcc
Confidence 2 1169999998764
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.28 Score=44.82 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=56.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
+|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|..... . .+. +.+ ..+|+||.|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~--~~~-~~~-----~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---S--TDL-SLL-----KDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---c--CCH-hHh-----cCCCEEEEcCCHHH
Confidence 58899999999988888888898 899999999988888877752111 0 111 111 25788888877633
Q ss_pred H---HHHHHHHhccCCceEEEEc
Q 016978 277 V---MRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 277 ~---~~~~~~~l~~~~G~iv~~g 296 (379)
. +..+...++++ -.++.++
T Consensus 70 ~~~~~~~l~~~l~~~-~ii~d~~ 91 (279)
T PRK07417 70 LLPPSEQLIPALPPE-AIVTDVG 91 (279)
T ss_pred HHHHHHHHHHhCCCC-cEEEeCc
Confidence 2 23333334443 4444444
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.12 Score=42.81 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.|..||++|+ -++|...++-+...|+ +||++.+.++.+..+.+.-.
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p 52 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETP 52 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCC
Confidence 5789999998 7899999999999999 99999999998877665433
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.11 Score=47.28 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
+...+++|+|+|+|+.+.+++.-+..+|+.+|+++.++.+|.+.+.+ ++.. . ...+ ....+|+|+
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~-------~~~~---~~~~~dlvI 183 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W-------RPDL---GGIEADILV 183 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c-------hhhc---ccccCCEEE
Confidence 34456799999999999999999999999889999999887765543 3311 1 0011 112589999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+|+.-
T Consensus 184 NaTp~ 188 (272)
T PRK12550 184 NVTPI 188 (272)
T ss_pred ECCcc
Confidence 98753
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.26 Score=43.66 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=48.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h---cC-Cc-eEe--CCCCCCchHHHHHHHhcCCCcc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FG-VT-EFV--NPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~---lg-~~-~v~--~~~~~~~~~~~~i~~~~~~g~d 266 (379)
++|+|+|+ |.+|...+..+...|+ +|+++++++++.+.+. + .+ .. +++ |..+ ..+....+.+.. ..+|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~-~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD-TASHAAFLDSLP-ALPD 78 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC-hHHHHHHHHHHh-hcCC
Confidence 57999988 9999999999888999 8999988887654322 1 11 11 122 2222 123333333322 2579
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+++.++|.
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987764
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.18 Score=42.54 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999998899998899998764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.24 Score=42.70 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-------------------H----HHHHHhcCCceEeCCCCCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-------------------K----FDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-------------------~----~~~~~~lg~~~v~~~~~~~ 250 (379)
...+|+|+|+|++|.-.+..+-..|.+++..+|...- | .+.++++..+..+....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~-- 97 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT-- 97 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe--
Confidence 4688999999999999999999999988988875421 1 12234455443332211
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCce
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGT 291 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~ 291 (379)
..+.+...+.. .++|+|++|..+.+.....-+.++.. +.
T Consensus 98 ~~~~~~~~~~~-~~~dvVi~~~~~~~~~~~ln~~c~~~-~i 136 (197)
T cd01492 98 DDISEKPEEFF-SQFDVVVATELSRAELVKINELCRKL-GV 136 (197)
T ss_pred cCccccHHHHH-hCCCEEEECCCCHHHHHHHHHHHHHc-CC
Confidence 11111111211 26899999988766555555555553 44
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.28 Score=44.56 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=61.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eEeCCCCC---CchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v~~~~~~---~~~~~~~i~~~~~~g~d~v 268 (379)
..++||++|+|. |..+..+++.....++++++.+++-.+.+++.-.. ..++.... ..+..+.+++. .+.+|+|
T Consensus 72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEE
Confidence 346999998864 44556666666566899999998877777663210 00100000 02333334332 3489998
Q ss_pred EEcCC----------CHHHHHHHHHHhccCCceEEEEc
Q 016978 269 FECIG----------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 269 id~~g----------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+--.. ..++++.+.+.|+++ |.++...
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS 186 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence 74222 235578889999997 9998763
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.18 Score=44.90 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhHHHH----HHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDR----AKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~-v~~~~~~~~~----~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
++.++||+|+ |.+|..++..+...|+ +|+. ..++.++.+. +++.+.... .|..+ ..+....+.+.. .
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4679999988 9999999999999999 6655 4566554332 233443322 22222 123333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 368999998874
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.32 Score=45.44 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCChHHHHHHHH-HHHcCCCeEEEEcCChhHHHHHH-h----cCCceEeCCCCCCchHHHHHHHhcCCCcc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEG-AKAAGASRVIGIDIDPKKFDRAK-N----FGVTEFVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~l-a~~~g~~~vi~v~~~~~~~~~~~-~----lg~~~v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
...++++|+|+|..|...+.. +...++++|.++++++++.+.+. + ++.. +.... +..+.+ ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~----~~~~~~-----~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN----SADEAI-----EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC----CHHHHH-----hcCC
Confidence 346789999999999876654 45678889999999988765443 2 3432 22222 232233 2589
Q ss_pred EEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 267 YSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 267 ~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+|+.|+++.+.+- . ..++++ -.+..+|...
T Consensus 195 iVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~ 224 (325)
T PRK08618 195 IIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFM 224 (325)
T ss_pred EEEEccCCCCcch-H-HhcCCC-cEEEecCCCC
Confidence 9999988865333 3 788885 7888888753
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.096 Score=49.32 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhcCCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
+++++||=+|+| .|..+..+++..|+ +|++++.++...+.+++ .|... ++..+. .++ .+..+.|
T Consensus 117 ~~~~~VLDiGCG-~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~-----~~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCG-IGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQ-----PFEDGQF 187 (340)
T ss_pred CCCCeEEEecCC-CCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccC-----CCCCCCc
Confidence 688999999885 45667788887788 99999999887666554 23211 111111 000 1223479
Q ss_pred cEEEEcCCC------HHHHHHHHHHhccCCceEEEEcc
Q 016978 266 DYSFECIGN------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 266 d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+|+-.... ...+.++.+.|+++ |+++....
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~ 224 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW 224 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 999864322 34678899999997 99987654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=46.93 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=48.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+. ..... ..|..+ ..++.+.+.+.. .+.+|+++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS-AEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999988 9999999999999999 88888777654321 11111 123322 123333333322 23789999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 83 ~~Ag~ 87 (266)
T PRK06171 83 NNAGI 87 (266)
T ss_pred ECCcc
Confidence 98873
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.22 Score=50.36 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=57.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
++|+|.|.|.+|+.+++.++..|. .+++++.++++.+.+++.|...++-... -.+.+++..-..+|.++-+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~----~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA----NEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC----CHHHHHhcCccccCEEEEEcCCh
Confidence 788999999999999999999998 8999999999999999988765543222 12233333223788888776664
Q ss_pred H
Q 016978 276 S 276 (379)
Q Consensus 276 ~ 276 (379)
+
T Consensus 493 ~ 493 (558)
T PRK10669 493 Y 493 (558)
T ss_pred H
Confidence 3
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=45.77 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChh-HHHHH---HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPK-KFDRA---KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~-~~~~~---~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
+++++||+|+ |.+|..+++.+...|+ +|++. .+.+. +.+.+ ++.+.... .|..+ ..+..+.+.+.. .
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 3678999988 9999999999999999 66664 33332 22222 33454332 23222 122333333322 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 80 ~~id~li~~ag~ 91 (246)
T PRK12938 80 GEIDVLVNNAGI 91 (246)
T ss_pred CCCCEEEECCCC
Confidence 379999999875
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.15 Score=45.83 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh------hHHHHHHhcCCc-eE--eCCCCCCchHHHHHHHhc
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP------KKFDRAKNFGVT-EF--VNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~------~~~~~~~~lg~~-~v--~~~~~~~~~~~~~i~~~~ 261 (379)
.|+++||+|+ +++|.+++..+...|+ +|+.+.++. +..+.+++.+.. .. .|..+ .....+.+.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHH
Confidence 4789999986 4899999988888999 777764332 222223222221 12 23222 123333333322
Q ss_pred --CCCccEEEEcCCCH-------H----------------------HHHHHHHHhccCCceEEEEccC
Q 016978 262 --DGGVDYSFECIGNV-------S----------------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 --~~g~d~vid~~g~~-------~----------------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+.+|++++++|.. . ..+.++..++++ |+++.++..
T Consensus 83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~ 149 (258)
T PRK07370 83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYL 149 (258)
T ss_pred HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecc
Confidence 24799999988731 0 134556667775 999888654
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.23 Score=45.57 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=47.4
Q ss_pred hhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHHhcCCceEe
Q 016978 187 WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~---~~~~~~~~~~lg~~~v~ 244 (379)
...+.+.||.++||=.. |..|...+.++...|+ ++|++-. +.||+..++++|+..+.
T Consensus 95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~ 155 (362)
T KOG1252|consen 95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIIL 155 (362)
T ss_pred HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEe
Confidence 35567999999999877 9999999999999999 7777644 56899999999996553
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.21 Score=44.15 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=47.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-HHH----HHHhcCCce-Ee--CCCCCCchHHHHHHHhcC--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KFD----RAKNFGVTE-FV--NPKDHDKPIQQVLVDLTD-- 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-~~~----~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~~-- 262 (379)
.+.+|||+|+ |.+|...+..+...|+ +|+++.++.+ +.+ .++..+... ++ |..+ ...+.+.+.+...
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 3578999988 9999999999999999 6766655443 222 122233322 22 3222 1233333333322
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|.++.++|.
T Consensus 82 ~~id~vi~~ag~ 93 (248)
T PRK05557 82 GGVDILVNNAGI 93 (248)
T ss_pred CCCCEEEECCCc
Confidence 368999998874
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.2 Score=44.76 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc--CCceE-eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF--GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l--g~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.+.+|||+|+ |.+|..++..+...|+ +|+++.++.++....... ++..+ .|..+ . . +.+.+....++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d--~-~-~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE--G-S-DKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC--C-H-HHHHHHhhcCCCEEE
Confidence 4689999998 9999999988888898 898888887765433221 22211 23222 1 1 122222212689999
Q ss_pred EcCCCHH-------------HHHHHHHHhccC-CceEEEEccC
Q 016978 270 ECIGNVS-------------VMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 270 d~~g~~~-------------~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
.+.|... ....+++.+... .++++.++..
T Consensus 91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 8876421 123344444432 2578887654
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.14 Score=50.75 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcC-Cce-EeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG-VTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg-~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+. +++ ... +...+ +..+.+ ..+|+||.|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~----dl~~al-----~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLD----EMLACA-----AEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHh----hHHHHH-----hcCCEEEEc
Confidence 689999999999999999999999878999999988866554 453 221 11111 121111 258999999
Q ss_pred CCCH
Q 016978 272 IGNV 275 (379)
Q Consensus 272 ~g~~ 275 (379)
++.+
T Consensus 337 T~s~ 340 (519)
T PLN00203 337 TSSE 340 (519)
T ss_pred cCCC
Confidence 8764
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.28 Score=45.51 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~ 170 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK 170 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 57899999999999999999999999 8999877554
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.22 Score=47.99 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCc-eE--eCCCCCCchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT-EF--VNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~-~v--~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
.|++|||+|+ |++|.+.+..+...|+ +|+++++++++.+... +.+.. .. .|..+ . +.+.+.. +++|++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd--~---~~v~~~l-~~IDiL 249 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ--E---AALAELL-EKVDIL 249 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC--H---HHHHHHh-CCCCEE
Confidence 4789999988 9999999998888999 8998888776553321 11111 12 22222 1 1222222 369999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
|+++|.
T Consensus 250 InnAGi 255 (406)
T PRK07424 250 IINHGI 255 (406)
T ss_pred EECCCc
Confidence 988764
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.26 Score=45.11 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=65.4
Q ss_pred ccccccchhhhhhhhhccCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHHHhcCCceEeCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
..+||+....+. +++..++ -.|++|+|+|- +.+|.-.+.++...|+ .|++.. ++..
T Consensus 136 ~~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~~------------------- 194 (296)
T PRK14188 136 ALVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTRD------------------- 194 (296)
T ss_pred CCcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCCC-------------------
Confidence 345665444444 3444443 47999999995 9999999999999999 888873 3321
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+.+ ...|+|+-++|.+..+...+ ++++ ..++.+|..
T Consensus 195 ---l~e~~-----~~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin 232 (296)
T PRK14188 195 ---LPAVC-----RRADILVAAVGRPEMVKGDW--IKPG-ATVIDVGIN 232 (296)
T ss_pred ---HHHHH-----hcCCEEEEecCChhhcchhe--ecCC-CEEEEcCCc
Confidence 11111 14799999999988776654 8886 888888864
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.24 Score=43.85 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=47.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHH----hcCC--ceE--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAK----NFGV--TEF--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~----~lg~--~~v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.+++|||+|+ |.+|..++..+...|+ +|++++++. ++.+.+. +... .++ .|..+ ...+...+.+..
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD-PDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 4578999988 9999998888888899 888887753 3332221 2211 112 23322 122333333221
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+++|+||.++|
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 236899999987
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.092 Score=49.56 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcC--Cce-Ee--CCCCCCchHHHHHHHhcCC-Cc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFG--VTE-FV--NPKDHDKPIQQVLVDLTDG-GV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg--~~~-v~--~~~~~~~~~~~~i~~~~~~-g~ 265 (379)
+|.+|||+|+ |.+|..++..+...|+ +|+++++++.... ..+.++ ... .+ |..+ ..+ +.+.... ++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~----~~~~~~~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD-AAK----LRKAIAEFKP 76 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC-HHH----HHHHHhhcCC
Confidence 4789999987 9999999999999999 8988877655322 212221 111 11 2222 122 2333223 68
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|+||++++.
T Consensus 77 d~vih~A~~ 85 (349)
T TIGR02622 77 EIVFHLAAQ 85 (349)
T ss_pred CEEEECCcc
Confidence 999999873
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.24 Score=46.93 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.+|||+|+|++|..+++.+...|..+++.++...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 458999999999999999999999999999997653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.29 Score=45.29 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=47.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHH----HHHHhcCCceEe---CCCCCCchHHHHHHHhc-CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKF----DRAKNFGVTEFV---NPKDHDKPIQQVLVDLT-DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~----~~~~~lg~~~v~---~~~~~~~~~~~~i~~~~-~~ 263 (379)
.|+++||+|+ +++|...++.+...|+ +|+.+++.. ++. +.+++.|....+ |..+ .....+.+.... .+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~~~g 88 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAVGLG 88 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHhC
Confidence 5789999988 9999999988888999 788876542 222 222334433222 2222 122222222211 25
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|+++|.
T Consensus 89 ~iD~li~nAG~ 99 (306)
T PRK07792 89 GLDIVVNNAGI 99 (306)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.2 Score=44.59 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=48.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CCCc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
+++||+|+ |.+|...++.+...|+ +|+.+.+++++.+.+ ++.+... . .|..+ .....+.+.+.. .+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcCCC
Confidence 46899988 9999999999889999 898888876654322 2334322 1 12222 123333333322 2368
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++|+++|.
T Consensus 79 d~vi~~ag~ 87 (254)
T TIGR02415 79 DVMVNNAGV 87 (254)
T ss_pred CEEEECCCc
Confidence 999998874
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.56 Score=41.76 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhHHHHH-Hh---cCCce-Ee--CCCCCCchHHHHHHHhc---
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDRA-KN---FGVTE-FV--NPKDHDKPIQQVLVDLT--- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~-v~~~~~~~~~~-~~---lg~~~-v~--~~~~~~~~~~~~i~~~~--- 261 (379)
.+.+++|+|+ |.+|..+++.+...|+ +|++ ..++.++.+.+ .+ .+... ++ |..+ ..++...+.+..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHHHHHh
Confidence 3679999988 9999999998888899 6655 45666544322 22 23222 22 3322 133333333321
Q ss_pred ----C-CCccEEEEcCCC
Q 016978 262 ----D-GGVDYSFECIGN 274 (379)
Q Consensus 262 ----~-~g~d~vid~~g~ 274 (379)
. +++|++|.++|.
T Consensus 83 ~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGI 100 (254)
T ss_pred ccccCCCCccEEEECCCC
Confidence 1 268999998875
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.19 Score=45.21 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hHHHHH-Hhc-CCce-E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP---KKFDRA-KNF-GVTE-F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~---~~~~~~-~~l-g~~~-v--~~~~~~~~~~~~~i~~~~- 261 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.+.++. ++.+.+ .++ +... . .|..+ ..+....+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS-DEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHH
Confidence 4789999987 4999999998888999 788876543 333323 333 2211 1 23332 233333333332
Q ss_pred -CCCccEEEEcCC
Q 016978 262 -DGGVDYSFECIG 273 (379)
Q Consensus 262 -~~g~d~vid~~g 273 (379)
.+.+|++++++|
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 247999998876
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.4 Score=32.71 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=53.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcC---CCeEEEE-cCChhHHHHH-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAG---ASRVIGI-DIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g---~~~vi~v-~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+|.|+|+|.+|.+.+.-....| . +|+.+ ++++++.+.+ ++++..... .+..+.++ ..|+||-|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~advvila 68 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA------DDNEEAAQ-----EADVVILA 68 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES------EEHHHHHH-----HTSEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc------CChHHhhc-----cCCEEEEE
Confidence 5778899999999999988888 6 77744 8999887666 456643221 12333333 37999999
Q ss_pred CCCHHHHHHHHHH---hccCCceEEEE
Q 016978 272 IGNVSVMRAALEC---CHKGWGTSVIV 295 (379)
Q Consensus 272 ~g~~~~~~~~~~~---l~~~~G~iv~~ 295 (379)
+.... +...+.. ..++ ..++.+
T Consensus 69 v~p~~-~~~v~~~i~~~~~~-~~vis~ 93 (96)
T PF03807_consen 69 VKPQQ-LPEVLSEIPHLLKG-KLVISI 93 (96)
T ss_dssp S-GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred ECHHH-HHHHHHHHhhccCC-CEEEEe
Confidence 88744 4334433 3443 444443
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.5 Score=38.71 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=63.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC----CchHHHHHHHhcCC-CccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH----DKPIQQVLVDLTDG-GVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~----~~~~~~~i~~~~~~-g~d~v 268 (379)
..+|+|.|. |++|-+-++..++.++ -|..++-++.. +..+..+++-++. .....+.+.+...+ ++|.|
T Consensus 3 agrVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe-----~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav 76 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENE-----QADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAV 76 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccc-----cccceEEecCCcchhHHHHHHHHHHHHhhcccccceE
Confidence 358999988 9999999999999999 88888776542 2223344544331 12233344444456 99999
Q ss_pred EEcCCCH--------H------------------HHHHHHHHhccCCceEEEEccC
Q 016978 269 FECIGNV--------S------------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 269 id~~g~~--------~------------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|..+|+. + ....+...|+++ |-+-+.|..
T Consensus 77 ~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAk 131 (236)
T KOG4022|consen 77 FCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAK 131 (236)
T ss_pred EEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeecccc
Confidence 9877751 0 123445668896 888777643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.74 Score=43.34 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC-c----eEeCCCCC---CchHHHHHHHhcCCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-T----EFVNPKDH---DKPIQQVLVDLTDGG 264 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~-~----~v~~~~~~---~~~~~~~i~~~~~~g 264 (379)
...++|||+|+| .|.++..+++.-+..+|++++.+++-.+.++++.. . ..++.... -.+..+.+.+ ..+.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSSL 226 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCCC
Confidence 334799999875 56677777777666699999999999999986310 0 00000000 1233444443 3347
Q ss_pred ccEEEEcCCC-----------HHHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSFECIGN-----------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vid~~g~-----------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+||--... .+++..+.+.|+++ |.++....
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence 9997743221 34688899999997 99887643
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.24 Score=43.83 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=48.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhcC--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~~--~ 263 (379)
++++||+|+ |.+|..++..+...|+ +++.+ ++++++.+.+. ..+... ++ |..+ ...+.+.+.+... +
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 578999988 9999998888888899 77777 78776554332 222222 22 2222 1223232322211 3
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|+||.+.|.
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 69999998774
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.55 Score=39.94 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=62.9
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~ 260 (379)
+....+.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++ ++... ++.. + ... .
T Consensus 24 ~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-d----~~~----~ 93 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-E----API----E 93 (187)
T ss_pred HHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-C----chh----h
Confidence 4455677899999888853 6666677776543489999999987776653 33322 2221 1 111 1
Q ss_pred cCCCccEEEEcCC---CHHHHHHHHHHhccCCceEEEE
Q 016978 261 TDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 261 ~~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
..+.+|+|+.... -...+..+.+.|+++ |+++..
T Consensus 94 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~ 130 (187)
T PRK08287 94 LPGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT 130 (187)
T ss_pred cCcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence 1236999986432 134678889999997 998764
|
|
| >PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.05 Score=28.92 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP 32 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~ 32 (379)
|||+++.++++ +.++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999999 99999999875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.45 Score=41.77 Aligned_cols=95 Identities=25% Similarity=0.291 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
-+|.+||=+|+| .|+++..+| .+|+ +|+++|-+++-.+.++.-.... -++|.. ...+.+.... +.||+|+.
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mA-r~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~---~~~edl~~~~-~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLA-RLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ---ATVEDLASAG-GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHH-HCCC-eeEEecCChHHHHHHHHhhhhccccccchh---hhHHHHHhcC-CCccEEEE
Confidence 478999999984 245554444 4578 9999999999888887422211 134432 3333333321 48999985
Q ss_pred c-----CCC-HHHHHHHHHHhccCCceEEEE
Q 016978 271 C-----IGN-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 271 ~-----~g~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
. +.. ..++..+.++++|+ |.+..-
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~-G~lf~S 160 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPG-GILFLS 160 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCC-cEEEEe
Confidence 3 222 35788899999996 887654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.27 Score=50.27 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=58.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.++|+|.|.|.+|+..++.++..|. ++++++.++++.+.+++.|...++- +. .-.+.+++..-..+|.++-++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~G-Da---t~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYG-DA---TRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEE-eC---CCHHHHHhcCCCcCCEEEEEeCC
Confidence 3689999999999999999999999 8999999999999999988754432 21 11223433322378999988888
Q ss_pred HH
Q 016978 275 VS 276 (379)
Q Consensus 275 ~~ 276 (379)
++
T Consensus 475 ~~ 476 (621)
T PRK03562 475 PQ 476 (621)
T ss_pred HH
Confidence 54
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.37 Score=43.55 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=67.3
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eE-eCCCCCCchHHHHHHHhcC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EF-VNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v-~~~~~~~~~~~~~i~~~~~ 262 (379)
+....++.++.+||=+|+| .|..+..+++..++ +|++++.+++-.+.+++.... .+ +... ++.+ .....
T Consensus 44 ~l~~l~l~~~~~VLDiGcG-~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~~----D~~~--~~~~~ 115 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSG-LGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEAN----DILK--KDFPE 115 (263)
T ss_pred HHHhCCCCCCCEEEEEcCC-CChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEEC----Cccc--CCCCC
Confidence 4566788999999999886 35556677777787 899999999888877764221 11 1111 1100 01122
Q ss_pred CCccEEEEc--C---C---CHHHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSFEC--I---G---NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vid~--~---g---~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.||+|+.. . + ...++..+.+.|+|+ |+++....
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~ 157 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY 157 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 379999852 1 1 134678888999997 99987654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.32 Score=47.30 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=63.0
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHh
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~ 260 (379)
....+++|++||=+|+| .|..++++++.++..+|++++.++++++.++ .+|... + .+.+. ..... ..
T Consensus 232 ~~L~~~~g~~VLDlcag-~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~--~~~~~---~~ 305 (426)
T TIGR00563 232 TWLAPQNEETILDACAA-PGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG--RGPSQ---WA 305 (426)
T ss_pred HHhCCCCCCeEEEeCCC-ccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc--ccccc---cc
Confidence 44567899999988764 2444445555555338999999999877664 356542 2 22111 10000 00
Q ss_pred cCCCccEEE-E--cCCC-------------------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 261 TDGGVDYSF-E--CIGN-------------------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 261 ~~~g~d~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
..+.||.|| | |+|. ...+..+++.++++ |+++..-.
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystc 369 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATC 369 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 123699887 3 4543 24677889999997 99986643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.17 Score=50.62 Aligned_cols=71 Identities=23% Similarity=0.247 Sum_probs=48.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.+++|||+|+|++|.+++..+...|+ +|++++++.++.+.+. +++.. ++...+ + .+......|++++|+
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l~~~-~~~~~~----~----~~~~~~~~diiINtT 447 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELADAVGGQ-ALTLAD----L----ENFHPEEGMILANTT 447 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCc-eeeHhH----h----hhhccccCeEEEecc
Confidence 46789999999999999999999999 8999988877765544 44322 222111 1 111112578898876
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
+-
T Consensus 448 ~v 449 (529)
T PLN02520 448 SV 449 (529)
T ss_pred cC
Confidence 53
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.31 Score=44.65 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=66.6
Q ss_pred ccccccchhhhhhhhhccCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
..+||+....+. +++..++ -.|++|.|+|. +.+|.-.+.++...|+ +|++..+...
T Consensus 137 ~~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~-------------------- 194 (301)
T PRK14194 137 VLTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST-------------------- 194 (301)
T ss_pred CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC--------------------
Confidence 355665444444 4454444 46999999999 5999999999999999 8888844322
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+..+.++ ..|+|+-++|.+..+...+ ++++ ..++.+|..
T Consensus 195 -~l~e~~~-----~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin 233 (301)
T PRK14194 195 -DAKALCR-----QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN 233 (301)
T ss_pred -CHHHHHh-----cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence 1111111 3799999999988776654 8886 888888854
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.44 Score=44.64 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=62.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eEeCCCCC---CchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v~~~~~~---~~~~~~~i~~~~~~g~d~v 268 (379)
..++|||+|.| -|..+.++++..+..+|++++.+++-.++++++... ..+..... ..|-...+++ ..+.+|+|
T Consensus 103 ~pk~VLiiGgG-~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGG-EGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVI 180 (336)
T ss_pred CCCEEEEECCC-chHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEE
Confidence 34789999875 355566777777777999999999999999875321 01110000 1233344433 33489987
Q ss_pred E-EcCC-----------CHHHHH-HHHHHhccCCceEEEE
Q 016978 269 F-ECIG-----------NVSVMR-AALECCHKGWGTSVIV 295 (379)
Q Consensus 269 i-d~~g-----------~~~~~~-~~~~~l~~~~G~iv~~ 295 (379)
| |... +.+++. .+.+.|+++ |.++.-
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence 7 4321 124566 788899997 998754
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.28 Score=44.09 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH-Hh----cCCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA-KN----FGVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~-~~----lg~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
+++++||+|+ +++|...+..+...|+ +|+.+.+ ++++.+.+ ++ .+... . .|..+ ..+....+.+..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 5789999988 9999999999889999 7777643 44443322 11 23321 2 23332 123333333322
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+.+|++++++|
T Consensus 85 ~g~id~lv~nAg 96 (260)
T PRK08416 85 FDRVDFFISNAI 96 (260)
T ss_pred cCCccEEEECcc
Confidence 247899999875
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.23 Score=45.39 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=65.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhcCC-----ceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGV-----TEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~lg~-----~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
+.++|+-+|.|+.++.++.+++... ..++++++.+++..+.+++.-. ..-+.... .+..+... ..+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~--~Da~~~~~--~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT--ADVMDVTE--SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE--Cchhhccc--ccCCcCE
Confidence 7799999999999998888887654 3389999999998888876431 11111111 12211110 1247999
Q ss_pred EEEcC-------CCHHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECI-------GNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~-------g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
||-.+ .....+..+.+.|+++ |.++.=
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr 232 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR 232 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence 98654 2245688999999996 887744
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.4 Score=42.92 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=63.9
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhcCCCcc
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
+.....++++||-+|+|. |..+..+++ .|. ++++++.+++..+.+++.... .++..+- .++ ....+.||
T Consensus 36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~--~~~-----~~~~~~fD 105 (251)
T PRK10258 36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI--ESL-----PLATATFD 105 (251)
T ss_pred HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc--ccC-----cCCCCcEE
Confidence 333445678999999864 666555554 576 899999999998888875432 2222111 110 12223799
Q ss_pred EEEEcCC------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 267 YSFECIG------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 267 ~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+.... ....+..+.+.|+++ |.++....
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~ 141 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL 141 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence 9986432 135688889999997 99886643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.29 Score=45.53 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
.|++|||+|+ |.+|..++..+...|+ +|+++.++.++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 41 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD 41 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence 4789999988 9999999998888899 78877676554
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.9 Score=37.72 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.+.+|||+|+|.+|.-=+..+...|+ +|++++..- +.+..+.+.|.-..+ ..+.... . + .++++||-|+
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~-~r~~~~~---d---l--~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLI-KGNYDKE---F---I--KDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEE-eCCCChH---H---h--CCCcEEEECC
Confidence 57899999999999988888888999 787774432 222222223322222 1111111 1 1 3789999999
Q ss_pred CCHHHHHHHHHHhccCCceEEEEcc
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.+. ++..+...++..+.++....
T Consensus 94 dD~~-vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 94 DDEK-LNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred CCHH-HHHHHHHHHHHcCCeEEEcC
Confidence 8866 55544444432377776644
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.23 Score=51.39 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h----cCCce--E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N----FGVTE--F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~----lg~~~--v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.+++|||+|+ |++|..+++.+...|+ +|++++++.++.+.+. + .+... . .|..+ ..++.+.+.+..
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd-~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD-EQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4789999988 9999999998888999 8999988877654432 1 23211 1 22222 123333333322
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 491 ~g~iDilV~nAG~ 503 (676)
T TIGR02632 491 YGGVDIVVNNAGI 503 (676)
T ss_pred cCCCcEEEECCCC
Confidence 2479999999884
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.5 Score=42.81 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=49.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
+..++||+|+ |.+|..+++.+...|+ +|+++.++.++.+.+ +..+... ++ |..+ ...+.+.+.+.. .+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3468999988 9999999988888899 888887776654322 2234332 21 2222 123333333321 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|.++|.
T Consensus 87 ~id~vi~~Ag~ 97 (274)
T PRK07775 87 EIEVLVSGAGD 97 (274)
T ss_pred CCCEEEECCCc
Confidence 68999998875
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.26 Score=43.94 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=47.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-HH----HHHHhcCCce-E--eCCCCCCchHHHHHHHhcC--CC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KF----DRAKNFGVTE-F--VNPKDHDKPIQQVLVDLTD--GG 264 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-~~----~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~g 264 (379)
+++||+|+ |.+|..++..+...|+ +|+.+++... +. +.++..+... + .|..+ ..++.+.+.+... +.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 57899988 9999999998888999 8888876532 21 1222233322 2 23322 2333333333322 36
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|.+.|.
T Consensus 81 id~vi~~ag~ 90 (256)
T PRK12745 81 IDCLVNNAGV 90 (256)
T ss_pred CCEEEECCcc
Confidence 8999998874
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.3 Score=46.82 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=31.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|||+|+|++|..+++.+...|.++++.+|.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35799999999999999999999999999998754
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.23 Score=44.25 Aligned_cols=74 Identities=30% Similarity=0.302 Sum_probs=47.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-E--eCCCCCCchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
+++++||+|+ |.+|...+..+...|+ +|++++++. .+..+... . .|..+ ...+.+.+.+.. .+.+|+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~ 79 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD-AAAVAQVCQRLLAETGPLDV 79 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 4689999988 9999999998888999 888887765 12222221 1 12222 123333333322 136899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|++.|.
T Consensus 80 vi~~ag~ 86 (252)
T PRK08220 80 LVNAAGI 86 (252)
T ss_pred EEECCCc
Confidence 9998875
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.23 Score=39.42 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=48.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGID-IDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.-+|-|+|+|-+|..+...++..|. .|..+. ++.++.+.+.. ++...+.+..+ .. ..+|++|-++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~-----------~~-~~aDlv~iav 76 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE-----------IL-RDADLVFIAV 76 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG-----------GG-CC-SEEEE-S
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc-----------cc-ccCCEEEEEe
Confidence 3578899999999999999999999 788874 45555565554 34333332221 11 2589999998
Q ss_pred CCHHHHHHHHHHhcc
Q 016978 273 GNVSVMRAALECCHK 287 (379)
Q Consensus 273 g~~~~~~~~~~~l~~ 287 (379)
.. +.+......|..
T Consensus 77 pD-daI~~va~~La~ 90 (127)
T PF10727_consen 77 PD-DAIAEVAEQLAQ 90 (127)
T ss_dssp -C-CHHHHHHHHHHC
T ss_pred ch-HHHHHHHHHHHH
Confidence 88 457777777765
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.27 Score=44.71 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|||+|+|++|..+++.+..+|..++..+|.+
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46899999999999999999999999899988764
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.33 Score=43.59 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHH----HHHhcCCce-E--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFD----RAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~----~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
+++++||+|+ |.+|...++.+...|+ +++.+.++. +..+ .+++.+... + .|..+ .....+.+.+.. .
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 677665533 3222 222334322 1 23332 122333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 84 g~id~lv~~ag~ 95 (261)
T PRK08936 84 GTLDVMINNAGI 95 (261)
T ss_pred CCCCEEEECCCC
Confidence 379999998874
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.68 Score=40.64 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
+..+|+|+|.|+||-+++..+-..|..++..++-
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 4588999999999999999999999988888864
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.91 Score=40.02 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=60.7
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC----ceEeCCCCCCchHHHHHHHhcCC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV----TEFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~----~~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
+...+++|++||=.|+| .|..+..+++..+..+|++++.+++.++.+.+... -..+..+. .+. .....+ ..
T Consensus 66 ~~l~i~~g~~VlD~G~G-~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~--~~~-~~~~~l-~~ 140 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAA-SGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA--RKP-ERYAHV-VE 140 (226)
T ss_pred hhCCCCCCCEEEEEccC-CCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC--CCc-chhhhc-cc
Confidence 44678999999988874 24455566776653489999999976664432211 11221111 110 000111 12
Q ss_pred CccEEEEcCCCHH----HHHHHHHHhccCCceEEEE
Q 016978 264 GVDYSFECIGNVS----VMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 g~d~vid~~g~~~----~~~~~~~~l~~~~G~iv~~ 295 (379)
.+|+|+.-...+. ++..+.+.|+++ |+++..
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA 175 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence 5999995444322 367888899997 998874
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.26 Score=44.26 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHH-HHHhcCCce-E--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP--KKFD-RAKNFGVTE-F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~-~~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ +++|.+.++.+...|+ +|+.++++. +..+ ..++++... . .|..+ ..+..+.+.+.. .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN-EEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC-HHHHHHHHHHHHHHc
Confidence 4789999985 7999999988888999 888887653 3323 333343321 1 23322 122333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 84 g~iD~li~nAG~ 95 (256)
T PRK07889 84 DGLDGVVHSIGF 95 (256)
T ss_pred CCCcEEEEcccc
Confidence 479999998764
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.37 Score=45.82 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|||+|+|++|..+++.+...|..+++.++..
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999999899999865
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.34 Score=44.87 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=56.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CCceEeCCCCCCchHHH-HHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPKDHDKPIQQ-VLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~~~v~~~~~~~~~~~~-~i~~~~~~g~d~vid~~g 273 (379)
-+|+|+|+|++|...+-.+...|. .|+.+.+.+++.+.+++- |.. +...... ..+.- .......+.+|+||-|+=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 369999999999887777777788 788898987777777643 432 2111110 00000 000001136899998866
Q ss_pred CHH---HHHHHHHHhccCCceEEEEc
Q 016978 274 NVS---VMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 274 ~~~---~~~~~~~~l~~~~G~iv~~g 296 (379)
+.+ .+..+...+.++ ..++.+-
T Consensus 80 ~~~~~~al~~l~~~l~~~-t~vv~lQ 104 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPG-AELLLLQ 104 (305)
T ss_pred HHhHHHHHHHHHhhCCCC-CEEEEEe
Confidence 633 334444445664 6666553
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.3 Score=41.37 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=43.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-------hHHHHHHhcCCceEe---CCCCCCchHHHHHHHhcC--C
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-------KKFDRAKNFGVTEFV---NPKDHDKPIQQVLVDLTD--G 263 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-------~~~~~~~~lg~~~v~---~~~~~~~~~~~~i~~~~~--~ 263 (379)
++||+|+ |++|+..++.+...|..+++.+.++. +..+.+++.|....+ |..+ .+.+.+.+..... +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~~~~~~~ 80 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTD-PEAVAAALAQLRQRFG 80 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTS-HHHHHHHHHTSHTTSS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccC-HHHHHHHHHHHHhccC
Confidence 6899976 99999999999999888999998882 223444556664322 1111 1333334444332 2
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.++.||.+.|.
T Consensus 81 ~i~gVih~ag~ 91 (181)
T PF08659_consen 81 PIDGVIHAAGV 91 (181)
T ss_dssp -EEEEEE----
T ss_pred Ccceeeeeeee
Confidence 56777777665
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.54 Score=43.15 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=37.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~ 43 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGA 43 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence 37788999999988888888898 89999999999888887775
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.36 Score=49.23 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=65.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+.|+|.|.|.+|+.+++.++..|. ++++++.++++.+.+++.|...++-. . .-.+.+++..-..+|.++-+.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GD-a---t~~~~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGD-A---TQLELLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEee-C---CCHHHHHhcCCccCCEEEEEeCCH
Confidence 679999999999999999999999 89999999999999999887554422 1 112234443223789999988885
Q ss_pred HHHHHH---HHHhccCCceEEE
Q 016978 276 SVMRAA---LECCHKGWGTSVI 294 (379)
Q Consensus 276 ~~~~~~---~~~l~~~~G~iv~ 294 (379)
+.-..+ .+...+. -+++.
T Consensus 476 ~~n~~i~~~~r~~~p~-~~Iia 496 (601)
T PRK03659 476 EDTMKIVELCQQHFPH-LHILA 496 (601)
T ss_pred HHHHHHHHHHHHHCCC-CeEEE
Confidence 432233 3334453 45543
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.72 Score=42.44 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=55.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC--CchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH--DKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~--~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|+|+|+|.+|.+.+..+...|. .|+.+++++++.+.+++.|... ...+. ........... ..+|+||-|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence 58999999999998888888898 8999988788777777656421 00000 00000001111 368999998876
Q ss_pred HHHHHHHHHHh----ccCCceEEEE
Q 016978 275 VSVMRAALECC----HKGWGTSVIV 295 (379)
Q Consensus 275 ~~~~~~~~~~l----~~~~G~iv~~ 295 (379)
.+ +..++..+ .++ ..++.+
T Consensus 77 ~~-~~~~~~~l~~~l~~~-~~iv~~ 99 (304)
T PRK06522 77 YQ-LPAALPSLAPLLGPD-TPVLFL 99 (304)
T ss_pred cc-HHHHHHHHhhhcCCC-CEEEEe
Confidence 33 34444433 342 455554
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.37 Score=43.82 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=65.0
Q ss_pred cccccchhhhhhhhhccCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..||+....+. +++..++ -.|++|+|+|. ..+|.-++.++...|+ +|+.+.+.. .
T Consensus 137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t---------------------~ 193 (285)
T PRK14189 137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKT---------------------R 193 (285)
T ss_pred CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCC---------------------C
Confidence 45655444443 3444443 36999999998 5569999999999999 788762211 2
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.++ .+|+|+-++|.+.++.. ..++++ ..++.+|..
T Consensus 194 ~l~~~~~-----~ADIVV~avG~~~~i~~--~~ik~g-avVIDVGin 232 (285)
T PRK14189 194 DLAAHTR-----QADIVVAAVGKRNVLTA--DMVKPG-ATVIDVGMN 232 (285)
T ss_pred CHHHHhh-----hCCEEEEcCCCcCccCH--HHcCCC-CEEEEcccc
Confidence 2222222 38999999999876654 779996 889999864
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.25 Score=49.89 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+.++||+|+ |++|..+++.+...|+ +|+.++++.++.+.+ ++.|... + .|..+ .....+.+.+.. .+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4578999988 9999999988889999 799998987765543 2334322 1 23332 123333333322 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++++++|.
T Consensus 392 ~id~lv~~Ag~ 402 (582)
T PRK05855 392 VPDIVVNNAGI 402 (582)
T ss_pred CCcEEEECCcc
Confidence 79999999875
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.34 Score=42.79 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
+.++|||+|+ |.+|..++..+...|+ +|+++.+ ..+..+.+ ...+... ++ |..+ ...+.+.+.+.. .
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTD-KAALEAAVAAAVERF 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCC-HHHHHHHHHHHHHHc
Confidence 3579999988 9999999999999999 6655434 44333222 2233221 22 2222 123333333321 1
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|+||.++|
T Consensus 83 ~~id~vi~~ag 93 (249)
T PRK12825 83 GRIDILVNNAG 93 (249)
T ss_pred CCCCEEEECCc
Confidence 37999999887
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.54 Score=43.82 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=61.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcC----CCeEEEEcC--ChhHHHHHHhcCCce--------------EeCCCCCCchHHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAG----ASRVIGIDI--DPKKFDRAKNFGVTE--------------FVNPKDHDKPIQQV 256 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g----~~~vi~v~~--~~~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~ 256 (379)
+|.|.|.|.+|..+++.+...+ . .|+++.. +.+.+.++.++...+ +++.+...-.-...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 4789999999999999988764 5 6666643 334444554433211 11111000000001
Q ss_pred HHHhc-CC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 257 LVDLT-DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 257 i~~~~-~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
..+.. .. ++|+||+|+|.......+...+..+ ++.|.++.+.
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~ 123 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPG 123 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCC
Confidence 11222 22 8999999999977788888888886 8999888653
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.8 Score=37.57 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=61.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.|++|||+|+|.+|.-=+.+....|+ +|+++..+. +.+..+.+.+-...+. +. +.. +.. .++++||-++
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~~~i~~~~-~~----~~~---~~~-~~~~lviaAt 80 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEEGKIKWIE-RE----FDA---EDL-DDAFLVIAAT 80 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHhcCcchhh-cc----cCh---hhh-cCceEEEEeC
Confidence 57899999999999999999999999 788875544 3333332222211111 11 100 011 1489999999
Q ss_pred CCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+.+..-....+.+.+ .+.+|...+..
T Consensus 81 ~d~~ln~~i~~~a~~-~~i~vNv~D~p 106 (210)
T COG1648 81 DDEELNERIAKAARE-RRILVNVVDDP 106 (210)
T ss_pred CCHHHHHHHHHHHHH-hCCceeccCCc
Confidence 997766667777777 48888776543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.58 Score=42.27 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=65.2
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcC-------Cce--EeCCCCCCchHHHHH
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFG-------VTE--FVNPKDHDKPIQQVL 257 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg-------~~~--v~~~~~~~~~~~~~i 257 (379)
+...+.++++||-+|+|. |..+..+++..+. .+|++++.+++-++.+++.. .+. ++..+. .++
T Consensus 67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~l---- 139 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TDL---- 139 (261)
T ss_pred HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--ccC----
Confidence 344678899999998852 5567778887653 38999999999887776421 111 111111 110
Q ss_pred HHhcCCCccEEEEcCC------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 258 VDLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.++.||.|+-..+ ....+.++.+.|+++ |+++....
T Consensus 140 -p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~ 183 (261)
T PLN02233 140 -PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDF 183 (261)
T ss_pred -CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEEC
Confidence 122236999875322 135689999999997 99987754
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.35 Score=43.50 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=48.0
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCC---hhHHHH-HHhcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDID---PKKFDR-AKNFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~---~~~~~~-~~~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ +++|.++++.+...|+ +|+.+.+. +++.+. .++++....+ |..+ ..+..+.+.... .
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS-DEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC-HHHHHHHHHHHHHHh
Confidence 4789999984 5899999988888999 78776543 233332 2334433222 3222 133333343332 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++++++|.
T Consensus 83 g~iD~lvnnAG~ 94 (260)
T PRK06997 83 DGLDGLVHSIGF 94 (260)
T ss_pred CCCcEEEEcccc
Confidence 479999998763
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.4 Score=47.46 Aligned_cols=69 Identities=28% Similarity=0.293 Sum_probs=48.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-----HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-----KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-----~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
.+++|+|+|+|.+|+.++.+++..|+ +|++++..+. ..+.+++.|......... . ....+|+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~--~---------~~~~~D~V 82 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP--T---------LPEDTDLV 82 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc--c---------ccCCCCEE
Confidence 46799999999999999999999999 7888875542 234566677754433221 1 01257888
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
+-+.|-
T Consensus 83 v~s~Gi 88 (480)
T PRK01438 83 VTSPGW 88 (480)
T ss_pred EECCCc
Confidence 777665
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.83 Score=42.39 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=61.9
Q ss_pred hhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH---HHHhc-CCc---eEeCCCCCCchHHH
Q 016978 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD---RAKNF-GVT---EFVNPKDHDKPIQQ 255 (379)
Q Consensus 183 ~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~---~~~~l-g~~---~v~~~~~~~~~~~~ 255 (379)
|..+.......+|++||=+|+|. |..+..++. .|+..|++++.++.-.. .++++ +.. ++... +
T Consensus 110 ~~~~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~-~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-----~--- 179 (314)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGS-GYHMWRMLG-HGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-----G--- 179 (314)
T ss_pred HHHHHHhcCCCCCCEEEEeccCC-cHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-----C---
Confidence 33445555677899999999864 666666654 47768999998885433 22222 111 11111 1
Q ss_pred HHHHhcC-CCccEEEEcC-----CC-HHHHHHHHHHhccCCceEEEE
Q 016978 256 VLVDLTD-GGVDYSFECI-----GN-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 256 ~i~~~~~-~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+..+.. ..||+|+-.. .+ ...+.++.+.|+++ |++++-
T Consensus 180 -ie~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle 224 (314)
T TIGR00452 180 -IEQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE 224 (314)
T ss_pred -HHHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence 112222 2799998532 11 35789999999997 999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.78 Score=41.19 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHHHhcCCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.++.+||=+|+| .|..+..+++. |. +|++++.+++..+.+++. |.. .++.. +..+ +.....+.+
T Consensus 43 ~~~~~vLDiGcG-~G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-----d~~~-l~~~~~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGG-EGQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-----AAQD-IAQHLETPV 113 (255)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-----CHHH-HhhhcCCCC
Confidence 456788888875 46677777775 77 899999999888777653 321 12211 1211 222223479
Q ss_pred cEEEEcC-----CC-HHHHHHHHHHhccCCceEEEE
Q 016978 266 DYSFECI-----GN-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 266 d~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+|+-.. .. ...+..+.+.|+++ |.++.+
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 9998432 11 35688999999997 999765
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.22 Score=43.58 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh----------hHHHHHHhcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP----------KKFDRAKNFG 239 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~----------~~~~~~~~lg 239 (379)
..|.+|+|.|.|.+|..+++++...|++.|.+++.+. +..+..++.+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~ 77 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG 77 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999999994555566665 5666665544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.42 Score=44.42 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHH-HhcCC---c-eE--eCCCCCCchHHHHHHHhc--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRA-KNFGV---T-EF--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~-~~lg~---~-~v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++++||+|+ +++|..++..+...| + +|+.+.+++++.+.+ +++.. . ++ .|..+ ..+....+.+.. .+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS-LDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHHHHhCC
Confidence 678999988 999999888888889 7 888888887765433 33321 1 11 23332 122333333321 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 81 ~iD~lI~nAG~ 91 (314)
T TIGR01289 81 PLDALVCNAAV 91 (314)
T ss_pred CCCEEEECCCc
Confidence 79999998763
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.34 Score=45.99 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=47.6
Q ss_pred CCCCEEEEEcC-ChHHHH--HHHHHHHcCCCeEEEEcCCh---h-------------HHHHHHhcCCce-Ee--CCCCCC
Q 016978 193 EPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDIDP---K-------------KFDRAKNFGVTE-FV--NPKDHD 250 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~--a~~la~~~g~~~vi~v~~~~---~-------------~~~~~~~lg~~~-v~--~~~~~~ 250 (379)
..++++||+|+ +++|++ .++.+ ..|+ +++++.... + -.+.+++.|... .+ |..+ +
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss-~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS-D 115 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC-H
Confidence 44689999988 899999 45566 8899 777775322 1 123455666542 22 2222 1
Q ss_pred ch---HHHHHHHhcCCCccEEEEcCCCH
Q 016978 251 KP---IQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 251 ~~---~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+. +.+.+.+.. |++|+++++++.+
T Consensus 116 E~v~~lie~I~e~~-G~IDiLVnSaA~~ 142 (398)
T PRK13656 116 EIKQKVIELIKQDL-GQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCccC
Confidence 22 233333332 4799999998874
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.5 Score=44.60 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
-.|++|.|+|.|.+|..+++.++.+|+ +|++.+++.
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 358999999999999999999999999 999998763
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.4 Score=42.95 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=47.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH-H---hcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA-K---NFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~-~---~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.+.++||+|+ |.+|..++..+...|+ +|+.+.+ +.++.+.+ . ..+... .+ |..+ .....+.+.+.. .
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLAD-EAEVRALVARASAAL 85 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4678999988 9999999988888999 6766544 34433222 2 224322 12 3322 123333333321 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 86 ~~iD~vi~~ag~ 97 (258)
T PRK09134 86 GPITLLVNNASL 97 (258)
T ss_pred CCCCEEEECCcC
Confidence 379999999874
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.76 Score=42.27 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=36.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~ 46 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA 46 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence 68899999999987777777888 89999999988887777665
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.5 Score=44.29 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.++.+||=+|+|. |..+..+++..+..++++++.+++-.+.+++.....-+.... .+..+ + .+..+.+|+|+.+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~--gD~e~-l-p~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE--GDAED-L-PFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe--ccHHh-C-CCCCCceeEEEEcC
Confidence 4678999998865 777777888775458999999988777776542111000000 11110 0 11223799888642
Q ss_pred C------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 273 G------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. ....+.++.+.|+++ |++++.+.
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~ 216 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG-GKACLIGP 216 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 1 134678999999997 99987754
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.2 Score=38.44 Aligned_cols=96 Identities=23% Similarity=0.283 Sum_probs=62.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceE-eCCCCCCchHHHHHHH-hcCCCccE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEF-VNPKDHDKPIQQVLVD-LTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v-~~~~~~~~~~~~~i~~-~~~~g~d~ 267 (379)
++.+||-+|+| .|..+..+++.....+|++++.+++..+.+++ .+...+ +.. .+..+.+.. +.++.+|.
T Consensus 40 ~~~~VLDiGcG-tG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~----~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFG-KGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC----GDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccC-CCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe----cCHHHHHHHHcCccccce
Confidence 57889989886 37777778877654489999999988887764 232211 111 222222322 22347898
Q ss_pred EEEcCC--------------CHHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECIG--------------NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~g--------------~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+-... ...+++.+.+.|+++ |.++..
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~ 155 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFA 155 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEE
Confidence 874322 245789999999997 998866
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.63 Score=42.46 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=55.6
Q ss_pred EEEEEcCChHHHHH-HHHHHHcCCCeEEEE-cCChhH--HHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 197 IVAVFGLGTVGLAV-AEGAKAAGASRVIGI-DIDPKK--FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 197 ~VlI~Gag~vG~~a-~~la~~~g~~~vi~v-~~~~~~--~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|.|+|+|.+|... ..+.+..+. ++.++ +.++++ +++++++|....+. ++...+.. ..+|+|++++
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~------~~e~ll~~---~dIDaV~iaT 72 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE------GVDGLLAN---PDIDIVFDAT 72 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC------CHHHHhcC---CCCCEEEECC
Confidence 68899999999854 555555566 55554 445543 56778888754432 22222221 2699999999
Q ss_pred CCHHHHHHHHHHhccCCceEEEEcc
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.......+..++.. |+-++.-.
T Consensus 73 p~~~H~e~a~~al~a--Gk~VIdek 95 (285)
T TIGR03215 73 SAKAHARHARLLAEL--GKIVIDLT 95 (285)
T ss_pred CcHHHHHHHHHHHHc--CCEEEECC
Confidence 996656666666555 55554433
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.42 Score=42.14 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=45.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHH-HHHh---cCCce-Ee--CCCCCCchHHHHHHHhc--CCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD-RAKN---FGVTE-FV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~-~~~~---lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
+++||+|+ |.+|..++..+...|+ +++++.+ ++++.+ ...+ .+... ++ |..+ ...+.+.+.+.. .+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 78 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEAELGP 78 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHHHcCC
Confidence 47899988 9999999999999999 7777766 444332 2222 22211 12 2222 122333333322 236
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+||.+.|.
T Consensus 79 id~vi~~ag~ 88 (242)
T TIGR01829 79 IDVLVNNAGI 88 (242)
T ss_pred CcEEEECCCC
Confidence 8999999874
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.42 Score=42.11 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=48.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 198 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 198 VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
|+|+|+ |.+|...++.+...+. +|.++.++.. +.+.+++.|+..+ ..+- .+. +.+.+.. .|+|.||.+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~--~~~-~~l~~al-~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADY--DDP-ESLVAAL-KGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-T--T-H-HHHHHHH-TTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-eccc--CCH-HHHHHHH-cCCceEEeecC
Confidence 789998 9999999999999888 7888878753 4566778888654 2221 112 2233322 27999998888
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.65 Score=44.35 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCEEEEE----cC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-----------HHhcCCceEeCCCCCCchHHHHHH
Q 016978 195 GSIVAVF----GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-----------AKNFGVTEFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 195 g~~VlI~----Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-----------~~~lg~~~v~~~~~~~~~~~~~i~ 258 (379)
..+|||+ |+ |-+|..++..+...|. +|+++.+++++.+. +...|...+. . +..+ +.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~-----D~~d-~~ 123 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-G-----DPAD-VK 123 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-e-----cHHH-HH
Confidence 4689999 98 9999999998888998 89999887654221 1223443322 1 1211 22
Q ss_pred HhcCC-CccEEEEcCCCH-HHHHHHHHHhccC-CceEEEEcc
Q 016978 259 DLTDG-GVDYSFECIGNV-SVMRAALECCHKG-WGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~-g~d~vid~~g~~-~~~~~~~~~l~~~-~G~iv~~g~ 297 (379)
+.... ++|+|+++.+.. .....+++.+... -.++|.++.
T Consensus 124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 124 SKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred hhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 22223 799999987652 2244555655542 136887654
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.68 Score=40.79 Aligned_cols=101 Identities=25% Similarity=0.316 Sum_probs=65.5
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhcCCc-------eEeCCCCCCchHHHHHHH
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVT-------EFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~lg~~-------~v~~~~~~~~~~~~~i~~ 259 (379)
......++.+||-+|+|. |..+..+++..+ ..++++++.+++..+.+++.-.. .++..+. .+. .
T Consensus 45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~ 116 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EAL-----P 116 (239)
T ss_pred HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccC-----C
Confidence 334456788999999976 788888888775 23999999999887777764211 1111111 110 0
Q ss_pred hcCCCccEEEEcCC------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 260 LTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
...+.+|+|+-..+ ....+..+...|+++ |.++.+..
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g-G~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG-GRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCC-cEEEEEEe
Confidence 12236898874321 245678888999997 99887754
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.46 Score=43.21 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=65.5
Q ss_pred cccccchhhhhhhhhccCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 174 LLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..||+....+. +++..++ -.|++|+|+|- ..+|.-+++++...|+ +|+.+.+.. .
T Consensus 138 ~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T---------------------~ 194 (285)
T PRK10792 138 LRPCTPRGIMT-LLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFT---------------------K 194 (285)
T ss_pred CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCC---------------------C
Confidence 45655444444 3454444 36999999998 5599999999999999 788773321 1
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.++ .+|+++.++|.+.++.. ..++++ ..++.+|..
T Consensus 195 ~l~~~~~-----~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin 233 (285)
T PRK10792 195 NLRHHVR-----NADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN 233 (285)
T ss_pred CHHHHHh-----hCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence 2222222 48999999999886554 778896 888899853
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.88 Score=36.12 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=53.6
Q ss_pred EEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChh--H-HHHHHhcCCceEeCCCCCCchHHHHHH-------------
Q 016978 198 VAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPK--K-FDRAKNFGVTEFVNPKDHDKPIQQVLV------------- 258 (379)
Q Consensus 198 VlI~Ga-g~vG~~a~~la~~~g--~~~vi~v~~~~~--~-~~~~~~lg~~~v~~~~~~~~~~~~~i~------------- 258 (379)
|.|+|+ |.+|..++.+.+... + +|++...... + .+.++++.+..++..++ ...+.++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~---~~~~~l~~~~~~~~~~~~v~ 76 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE---EAYEELKKALPSKGPGIEVL 76 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH---HHHHHHHHHHHHTTSSSEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH---HHHHHHHHHhhhcCCCCEEE
Confidence 578899 999999999999987 5 7777654332 2 35566788888766554 2222222
Q ss_pred -------HhcC-CCccEEEEcCCCHHHHHHHHHHhcc
Q 016978 259 -------DLTD-GGVDYSFECIGNVSVMRAALECCHK 287 (379)
Q Consensus 259 -------~~~~-~g~d~vid~~g~~~~~~~~~~~l~~ 287 (379)
+... ..+|+|+.++.+..-+.-.+..+..
T Consensus 77 ~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~ 113 (129)
T PF02670_consen 77 SGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA 113 (129)
T ss_dssp ESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT
T ss_pred eChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC
Confidence 2222 2677777776665656666777776
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.58 Score=39.68 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=56.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce--EeCCCCCCchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
++++||=+|+| .|.+++.+++.....+|++++.+++..+.++ +.+.+. ++.. +..+ + ...+.+|+
T Consensus 42 ~~~~vLDiGcG-tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~--~~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSG-AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-F--QHEEQFDV 112 (181)
T ss_pred CCCeEEEecCC-CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-c--cccCCccE
Confidence 37899989874 3555556665554348999999988665554 345432 2221 1211 1 11237998
Q ss_pred EEEcC-CC-HHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECI-GN-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~-g~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+-.. .. +..++.+.+.|+++ |+++..
T Consensus 113 I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 141 (181)
T TIGR00138 113 ITSRALASLNVLLELTLNLLKVG-GYFLAY 141 (181)
T ss_pred EEehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence 88532 22 35567788889997 998865
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.64 Score=44.62 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC---CCCCCchHHHHHHHhcCC-CccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN---PKDHDKPIQQVLVDLTDG-GVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~---~~~~~~~~~~~i~~~~~~-g~d~v 268 (379)
...+|||+|+ .+.|+..+..++..|. +|+++++++...... +..++..+. +......+.+.+.++... ++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRF-SRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHH-HHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 3589999998 6689999999999999 899998876543321 122333221 222224566777665555 89999
Q ss_pred EEcCCCHHHHHHHHHHhcc
Q 016978 269 FECIGNVSVMRAALECCHK 287 (379)
Q Consensus 269 id~~g~~~~~~~~~~~l~~ 287 (379)
|-+......+......+.+
T Consensus 81 IP~~e~~~~~a~~~~~l~~ 99 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELSA 99 (389)
T ss_pred EECChHHHhHHhhhhhhcC
Confidence 9776543223333344555
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.47 Score=45.18 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
..+++|||+|+ |.+|..++..+...|+ +|+++.++.++.+.+++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~ 95 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE 95 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 44789999988 9999999999999999 78776666655444433
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.57 Score=36.14 Aligned_cols=93 Identities=28% Similarity=0.402 Sum_probs=57.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
|.+||-.|+| .|..++.+++.. ..++++++.+++..++++. .+.+ .++. .++.+.......+.+|+
T Consensus 1 g~~vlD~~~G-~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCG-SGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV-----GDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETST-TCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE-----SHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcc-hHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE-----CchhhchhhccCceeEE
Confidence 5678887653 244444444444 4499999999998888875 2221 1221 34444443444458999
Q ss_pred EEEcC--CC------------HHHHHHHHHHhccCCceEEEE
Q 016978 268 SFECI--GN------------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 268 vid~~--g~------------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+-.- +. ..++..+.+.|+++ |.++.+
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~ 114 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI 114 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence 88521 11 24588999999997 998765
|
... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.34 Score=45.33 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
-.+++|+|+|| |.+|..+++.+.. .|..+++.+.+++++.+.+. +++...+ .++ .+.. ..+|+|+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i-------~~l----~~~l-~~aDiVv 220 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI-------LSL----EEAL-PEADIVV 220 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH-------HhH----HHHH-ccCCEEE
Confidence 36789999999 9999988877754 56668999988887776554 3321110 112 2221 2589999
Q ss_pred EcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 270 ECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 270 d~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+++.+..+..-...++++ -.+++++.+
T Consensus 221 ~~ts~~~~~~I~~~~l~~~-~~viDiAvP 248 (340)
T PRK14982 221 WVASMPKGVEIDPETLKKP-CLMIDGGYP 248 (340)
T ss_pred ECCcCCcCCcCCHHHhCCC-eEEEEecCC
Confidence 9988754321122345664 677788765
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.72 Score=43.13 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=62.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe------CCCC-CCchHHHHHHHhcCCCccEE
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV------NPKD-HDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~------~~~~-~~~~~~~~i~~~~~~g~d~v 268 (379)
-+|.|+|+|.+|.+.+..+...|. .|+..++++++.+.+.+.+..... ...- ...+..+.+ ...|+|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD~V 78 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-----AGADFA 78 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCCEE
Confidence 378999999999999998888898 899999988877766654211000 0000 001222221 258999
Q ss_pred EEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 269 FECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 269 id~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|-|+.+.. +...+..++++ -.++.+..
T Consensus 79 i~~v~~~~-~~~v~~~l~~~-~~vi~~~~ 105 (328)
T PRK14618 79 VVAVPSKA-LRETLAGLPRA-LGYVSCAK 105 (328)
T ss_pred EEECchHH-HHHHHHhcCcC-CEEEEEee
Confidence 99998854 67788888885 66665544
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=42.69 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=46.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHH----HHhcCCce-Ee--CCCCCCchHHHHHHHhc--CCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR----AKNFGVTE-FV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~----~~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
++|||+|+ |++|...++.+...|+ +|+.+ .+++++.+. ++..+... .+ |..+ ..++.+.+.+.. .++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAAEETADAVRAAGGRACVVAGDVAN-EADVIAMFDAVQSAFGR 80 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCC-HHHHHHHHHHHHHhcCC
Confidence 57999988 9999999999888999 66654 445444332 22233222 11 2222 133333333332 237
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|.++|.
T Consensus 81 id~li~~ag~ 90 (248)
T PRK06947 81 LDALVNNAGI 90 (248)
T ss_pred CCEEEECCcc
Confidence 9999998873
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.57 Score=45.90 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
....+|+|.|.|.+|..+++.+...|. .|++++.++++.+.+++.+.+ .++.-+. .-.+.+.+..-..+|.|+-+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~~~~~~i~gd~---~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEELPNTLVLHGDG---TDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHCCCCeEEECCC---CCHHHHHhcCCccCCEEEEC
Confidence 346889999999999999999999999 899999999988877764322 2222221 11233444333378999987
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
++.
T Consensus 305 ~~~ 307 (453)
T PRK09496 305 TND 307 (453)
T ss_pred CCC
Confidence 776
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.91 Score=42.50 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=33.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
.|.+|.|+|.|.+|...++.++..|. +|++.+++++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 67899999999999999999999999 89999887654
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.46 Score=42.20 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH-HhcCCce-Ee--CCCCCCchHHHHHHH---hcCCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA-KNFGVTE-FV--NPKDHDKPIQQVLVD---LTDGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~-~~lg~~~-v~--~~~~~~~~~~~~i~~---~~~~g 264 (379)
.++++||+|+ |.+|..++..+...|+ +|+.+. +++++.+.+ .+++... ++ |..+ ..++.+.+.+ ....+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADELGDRAIALQADVTD-REQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHhCCC
Confidence 3578999988 9999999998888999 676653 344444333 3343222 22 2222 1233333333 22224
Q ss_pred ccEEEEcCC
Q 016978 265 VDYSFECIG 273 (379)
Q Consensus 265 ~d~vid~~g 273 (379)
+|++|+++|
T Consensus 82 id~li~~ag 90 (253)
T PRK08642 82 ITTVVNNAL 90 (253)
T ss_pred CeEEEECCC
Confidence 999999875
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.4 Score=46.97 Aligned_cols=70 Identities=29% Similarity=0.364 Sum_probs=48.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-hHH----HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-KKF----DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~-~~~----~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
.+++|+|+|+|.+|+.+++.+...|+ +|++++..+ +.. +.+.++|...+. .+. .+ +. .+++|+|
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~------~~-~~~~d~v 72 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVL-GEY--PE------EF-LEGVDLV 72 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCc--ch------hH-hhcCCEE
Confidence 47899999998899999999999999 899998764 222 334455654322 221 11 11 1368999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
+.+.|.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 998875
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.47 Score=45.57 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
...+|||+|+|++|..++..+..+|..+++.+|..
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 45799999999999999999999999899988754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 379 | ||||
| 4dl9_A | 396 | Crystal Structure Of S-nitrosoglutathione Reductase | 0.0 | ||
| 3uko_A | 378 | Crystal Structure Of S-Nitrosoglutathione Reductase | 0.0 | ||
| 1mc5_A | 374 | Ternary Complex Of Human Glutathione-Dependent Form | 1e-139 | ||
| 3qj5_A | 374 | S-Nitrosoglutathione Reductase (Gsnor) In Complex W | 1e-139 | ||
| 1teh_A | 373 | Structure Of Human Liver Chichi Alcohol Dehydrogena | 1e-139 | ||
| 2fzw_A | 373 | Structure Of The Binary Complex Of The E67l Mutant | 1e-138 | ||
| 1cdo_A | 374 | Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co | 1e-119 | ||
| 3cos_A | 381 | Crystal Structure Of Human Class Ii Alcohol Dehydro | 1e-111 | ||
| 1hdy_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 1e-109 | ||
| 1hdx_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 1e-108 | ||
| 1hdz_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 1e-108 | ||
| 1htb_A | 374 | Crystallization Of Human Beta3 Alcohol Dehydrogenas | 1e-107 | ||
| 1hso_A | 374 | Human Alpha Alcohol Dehydrogenase (Adh1a) Length = | 1e-106 | ||
| 6adh_A | 374 | Structure Of Triclinic Ternary Complex Of Horse Liv | 1e-106 | ||
| 1ht0_A | 374 | Human Gamma-2 Alcohol Dehydrogense Length = 374 | 1e-105 | ||
| 3oq6_A | 374 | Horse Liver Alcohol Dehydrogenase A317c Mutant Comp | 1e-105 | ||
| 1axe_A | 374 | Crystal Structure Of The Active-Site Mutant Phe93-> | 1e-105 | ||
| 1qlh_A | 374 | Horse Liver Alcohol Dehydrogenase Complexed To Nad | 1e-105 | ||
| 1n8k_A | 374 | Horse Liver Alcohol Dehydrogenase Val292thr Mutant | 1e-105 | ||
| 1axg_A | 374 | Crystal Structure Of The Val203->ala Mutant Of Live | 1e-105 | ||
| 1mgo_A | 374 | Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L | 1e-105 | ||
| 1qv6_A | 374 | Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG | 1e-105 | ||
| 1ju9_A | 374 | Horse Liver Alcohol Dehydrogenase Val292ser Mutant | 1e-105 | ||
| 1a71_A | 374 | Ternary Complex Of An Active Site Double Mutant Of | 1e-105 | ||
| 1ee2_B | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 1e-105 | ||
| 1ee2_A | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 1e-104 | ||
| 1agn_A | 373 | X-Ray Structure Of Human Sigma Alcohol Dehydrogenas | 1e-100 | ||
| 1d1t_A | 373 | Mutant Of Human Sigma Alcohol Dehydrogenase With Le | 2e-99 | ||
| 1e3l_A | 376 | P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase | 2e-98 | ||
| 1p0c_A | 373 | Crystal Structure Of The Nadp(H)-Dependent Vertebra | 8e-98 | ||
| 1e3e_A | 376 | Mouse Class Ii Alcohol Dehydrogenase Complex With N | 3e-97 | ||
| 1f8f_A | 371 | Crystal Structure Of Benzyl Alcohol Dehydrogenase F | 2e-37 | ||
| 1llu_A | 342 | The Ternary Complex Of Pseudomonas Aeruginosa Alcoh | 5e-19 | ||
| 1rjw_A | 339 | Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd | 9e-19 | ||
| 1vj0_A | 380 | Crystal Structure Of Alcohol Dehydrogenase (Tm0436) | 9e-19 | ||
| 3pii_A | 339 | Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog | 2e-18 | ||
| 1h2b_A | 359 | Crystal Structure Of The Alcohol Dehydrogenase From | 2e-18 | ||
| 3meq_A | 365 | Crystal Structure Of Alcohol Dehydrogenase From Bru | 9e-18 | ||
| 2hcy_A | 347 | Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi | 1e-17 | ||
| 3s1l_A | 340 | Crystal Structure Of Apo-Form Furx Length = 340 | 5e-17 | ||
| 2h6e_A | 344 | Crystal Structure Of The D-Arabinose Dehydrogenase | 1e-16 | ||
| 2dq4_A | 343 | Crystal Structure Of Threonine 3-Dehydrogenase Leng | 3e-16 | ||
| 3two_A | 348 | The Crystal Structure Of Cad From Helicobacter Pylo | 7e-16 | ||
| 2nvb_A | 352 | Contribution Of Pro275 To The Thermostability Of Th | 7e-15 | ||
| 1ykf_A | 352 | Nadp-Dependent Alcohol Dehydrogenase From Thermoana | 7e-15 | ||
| 3fpl_A | 351 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 8e-15 | ||
| 3qe3_A | 355 | Sheep Liver Sorbitol Dehydrogenase Length = 355 | 1e-14 | ||
| 4ej6_A | 370 | Crystal Structure Of A Putative Zinc-Binding Dehydr | 1e-14 | ||
| 2eih_A | 343 | Crystal Structure Of Nad-Dependent Alcohol Dehydrog | 1e-14 | ||
| 1uuf_A | 369 | Crystal Structure Of A Zinc-Type Alcohol Dehydrogen | 6e-14 | ||
| 4ilk_A | 359 | Crystal Structure Of Short Chain Alcohol Dehydrogen | 2e-13 | ||
| 1pl7_A | 356 | Human Sorbitol Dehydrogenase (Apo) Length = 356 | 3e-13 | ||
| 1e3j_A | 352 | Ketose Reductase (Sorbitol Dehydrogenase) From Silv | 4e-13 | ||
| 4eex_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 1e-12 | ||
| 1pl6_A | 356 | Human SdhNADHINHIBITOR COMPLEX Length = 356 | 2e-12 | ||
| 4eez_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 3e-12 | ||
| 1yqd_A | 366 | Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ | 5e-12 | ||
| 2eer_A | 347 | Structural Study Of Project Id St2577 From Sulfolob | 5e-12 | ||
| 4a2c_A | 346 | Crystal Structure Of Galactitol-1-Phosphate Dehydro | 1e-11 | ||
| 2xaa_A | 345 | Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube | 3e-11 | ||
| 3gfb_A | 350 | L-Threonine Dehydrogenase (Tktdh) From The Hyperthe | 4e-11 | ||
| 2dfv_A | 347 | Hyperthermophilic Threonine Dehydrogenase From Pyro | 3e-10 | ||
| 2d8a_A | 348 | Crystal Structure Of Ph0655 From Pyrococcus Horikos | 3e-10 | ||
| 1jqb_A | 351 | Alcohol Dehydrogenase From Clostridium Beijerinckii | 3e-09 | ||
| 3ftn_A | 352 | Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO | 4e-09 | ||
| 3fsr_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 1e-08 | ||
| 1ped_A | 351 | Bacterial Secondary Alcohol Dehydrogenase (Apo-Form | 1e-08 | ||
| 1r37_A | 347 | Alcohol Dehydrogenase From Sulfolobus Solfataricus | 2e-08 | ||
| 2b83_A | 351 | A Single Amino Acid Substitution In The Clostridium | 2e-08 | ||
| 1nto_A | 347 | N249y Mutant Of Alcohol Dehydrogenase From The Arch | 4e-08 | ||
| 3i4c_A | 347 | Crystal Structure Of Sulfolobus Solfataricus Adh(Ss | 8e-08 | ||
| 1kol_A | 398 | Crystal Structure Of Formaldehyde Dehydrogenase Len | 1e-07 | ||
| 2cd9_A | 366 | Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A | 4e-07 | ||
| 1jvb_A | 347 | Alcohol Dehydrogenase From The Archaeon Sulfolobus | 7e-07 | ||
| 2cdb_A | 366 | Sulfolobus Solfataricus Glucose Dehydrogenase 1 In | 1e-06 | ||
| 3fpc_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 3e-06 | ||
| 1qor_A | 327 | Crystal Structure Of Escherichia Coli Quinone Oxido | 2e-05 | ||
| 3m6i_A | 363 | L-Arabinitol 4-Dehydrogenase Length = 363 | 5e-05 | ||
| 3jyl_A | 325 | Crystal Structures Of Pseudomonas Syringae Pv. Toma | 6e-05 | ||
| 2b5w_A | 357 | Crystal Structure Of D38c Glucose Dehydrogenase Mut | 2e-04 | ||
| 3qwa_A | 334 | Crystal Structure Of Saccharomyces Cerevisiae Zeta- | 3e-04 | ||
| 1wly_A | 333 | Crystal Structure Of 2-haloacrylate Reductase Lengt | 3e-04 | ||
| 3uog_A | 363 | Crystal Structure Of Putative Alcohol Dehydrogenase | 6e-04 | ||
| 2dph_A | 398 | Crystal Structure Of Formaldehyde Dismutase Length | 7e-04 |
| >pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396 | Back alignment and structure |
|
| >pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378 | Back alignment and structure |
|
| >pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374 | Back alignment and structure |
|
| >pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374 | Back alignment and structure |
|
| >pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373 | Back alignment and structure |
|
| >pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373 | Back alignment and structure |
|
| >pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374 | Back alignment and structure |
|
| >pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381 | Back alignment and structure |
|
| >pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374 | Back alignment and structure |
|
| >pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374 | Back alignment and structure |
|
| >pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374 | Back alignment and structure |
|
| >pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374 | Back alignment and structure |
|
| >pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374 | Back alignment and structure |
|
| >pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373 | Back alignment and structure |
|
| >pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373 | Back alignment and structure |
|
| >pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373 | Back alignment and structure |
|
| >pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371 | Back alignment and structure |
|
| >pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342 | Back alignment and structure |
|
| >pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339 | Back alignment and structure |
|
| >pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380 | Back alignment and structure |
|
| >pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339 | Back alignment and structure |
|
| >pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359 | Back alignment and structure |
|
| >pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365 | Back alignment and structure |
|
| >pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347 | Back alignment and structure |
|
| >pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340 | Back alignment and structure |
|
| >pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344 | Back alignment and structure |
|
| >pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348 | Back alignment and structure |
|
| >pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352 | Back alignment and structure |
|
| >pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352 | Back alignment and structure |
|
| >pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351 | Back alignment and structure |
|
| >pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355 | Back alignment and structure |
|
| >pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370 | Back alignment and structure |
|
| >pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369 | Back alignment and structure |
|
| >pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359 | Back alignment and structure |
|
| >pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356 | Back alignment and structure |
|
| >pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352 | Back alignment and structure |
|
| >pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348 | Back alignment and structure |
|
| >pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356 | Back alignment and structure |
|
| >pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348 | Back alignment and structure |
|
| >pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366 | Back alignment and structure |
|
| >pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347 | Back alignment and structure |
|
| >pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346 | Back alignment and structure |
|
| >pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345 | Back alignment and structure |
|
| >pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350 | Back alignment and structure |
|
| >pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347 | Back alignment and structure |
|
| >pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348 | Back alignment and structure |
|
| >pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351 | Back alignment and structure |
|
| >pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351 | Back alignment and structure |
|
| >pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347 | Back alignment and structure |
|
| >pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351 | Back alignment and structure |
|
| >pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347 | Back alignment and structure |
|
| >pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347 | Back alignment and structure |
|
| >pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398 | Back alignment and structure |
|
| >pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347 | Back alignment and structure |
|
| >pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex With Nadp And Glucose Length = 366 | Back alignment and structure |
|
| >pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352 | Back alignment and structure |
|
| >pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327 | Back alignment and structure |
|
| >pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363 | Back alignment and structure |
|
| >pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325 | Back alignment and structure |
|
| >pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357 | Back alignment and structure |
|
| >pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334 | Back alignment and structure |
|
| >pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333 | Back alignment and structure |
|
| >pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363 | Back alignment and structure |
|
| >pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 | Back alignment and structure |
|---|
Score = 710 bits (1835), Expect = 0.0
Identities = 258/373 (69%), Positives = 301/373 (80%), Gaps = 1/373 (0%)
Query: 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
+VI CKAAVAWE KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
ILGH AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G+
Sbjct: 62 VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG G
Sbjct: 122 MP-DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYG 180
Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
A NTAK+EPGS+ AVFGLG VGLAV G K AGASR+IG+DI+ KF RAK FG TE +
Sbjct: 181 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240
Query: 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI 304
NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAASG+EI
Sbjct: 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEI 300
Query: 305 STRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY 364
+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+IKVDE+VTHN++ EIN+AF
Sbjct: 301 ATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL 360
Query: 365 MHGGDCLRCVLKM 377
MH G +R V+K+
Sbjct: 361 MHSGKSIRTVVKI 373
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374 | Back alignment and structure |
|---|
Score = 699 bits (1807), Expect = 0.0
Identities = 199/374 (53%), Positives = 256/374 (68%), Gaps = 2/374 (0%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
ST G+VI CKAAV WE KP IE+V+VAPP+A EVRIK++ T +C +D + SG
Sbjct: 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
P I GHEAAGIVES+GEGVT V+PGD VIP + +C +C+ CK + N C K +
Sbjct: 61 -LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
G M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID +PL+KVCL+GCG T
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
G G+ AKV GS AVFGLG VGL+V G KAAGA+R+IG+DI+ KF +AK G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
E VNP+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC + +G SVIVGV
Sbjct: 239 ECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
Q +S P L++GR WKG FGGFKS+ VP LV +M K+ +D +TH + +INE
Sbjct: 299 QNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEG 358
Query: 362 FRYMHGGDCLRCVL 375
F + G+ +R +L
Sbjct: 359 FDLLRSGESIRTIL 372
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 | Back alignment and structure |
|---|
Score = 695 bits (1797), Expect = 0.0
Identities = 193/376 (51%), Positives = 253/376 (67%), Gaps = 4/376 (1%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+ P
Sbjct: 1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT 120
FP ILGHEA G+VES+G GVT V+PGD VIP + +C C+ CKS +N C K
Sbjct: 61 K-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119
Query: 121 GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP 180
G+M D SRF+ GKPIY+ MGTSTF++YTVV D++VAKIDP+APL+ CL+GCG
Sbjct: 120 KTGLMA-DMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFA 177
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
TG GA NTAKV PGS AVFGLG VG + G KAAGASR+IG+ KF +A G
Sbjct: 178 TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 237
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
TE +NPKD+DKPI +V+ + T+GGVDY+ EC G + M AL+ + G G +V++G+A+
Sbjct: 238 TECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP 297
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
+ + P L+TGR KG+ FGGFK +V LVD YMKK+I V+ V+ +TL +IN+
Sbjct: 298 NERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINK 356
Query: 361 AFRYMHGGDCLRCVLK 376
AF + G +R ++
Sbjct: 357 AFELLSSGQGVRSIMI 372
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374 | Back alignment and structure |
|---|
Score = 693 bits (1790), Expect = 0.0
Identities = 212/376 (56%), Positives = 271/376 (72%), Gaps = 2/376 (0%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+T G+VI CKAAVAWE NKPLVIE+++V P A E+RIKI+ T +CHTD Y +
Sbjct: 1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K
Sbjct: 61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
+M+ +++RF+ G+ + F+GTSTFSQYTVV+ ++VAKIDP APLD VCLLGCGV T
Sbjct: 121 PD-VMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
G GA NTAKVEPGS AVFGLG VGLA G +AGA R+I +D++P KF++AK FG T
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
+FVNP DH +PI QVL +T+GGVD+S EC+GNV VMR ALE C KGWG SV+VG
Sbjct: 240 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL- 298
Query: 302 QEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEA 361
+++TRP QL+ GR WKG+ FGGFK + VP +V Y+ K++K+DE++TH M L +N+A
Sbjct: 299 HDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDA 358
Query: 362 FRYMHGGDCLRCVLKM 377
M G C+R VL +
Sbjct: 359 IDLMKHGKCIRTVLSL 374
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 | Back alignment and structure |
|---|
Score = 690 bits (1784), Expect = 0.0
Identities = 184/377 (48%), Positives = 247/377 (65%), Gaps = 6/377 (1%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T+G+VI CKAA+AW+ PL IE+++V+PP+A EVRI+++ T +C TD K L
Sbjct: 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-AL 60
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR---GA 119
FP +LGHE AGIVESVG GVT +PGD VIP + +C+ CK C S TNLCGK+R
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
T +M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D +A L++VCL+GCG
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGF 180
Query: 180 PTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
+G GA NTAKV PGS AVFGLG VGL+ G K AGASR+I IDI+ +KF +AK G
Sbjct: 181 SSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 240
Query: 240 VTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
T+ +NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C GWG+ +VG
Sbjct: 241 ATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK- 299
Query: 300 SGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEIN 359
E++ ++ GR GT FGG+KS VP LV Y K+ +D VTH + IN
Sbjct: 300 -VDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESIN 358
Query: 360 EAFRYMHGGDCLRCVLK 376
+A M G +R +L
Sbjct: 359 DAIDLMKEGKSIRTILT 375
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 | Back alignment and structure |
|---|
Score = 597 bits (1543), Expect = 0.0
Identities = 108/375 (28%), Positives = 176/375 (46%), Gaps = 10/375 (2%)
Query: 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPC 65
++ AAV ++ +++ PQ EV +K++ T +CHTD K P P
Sbjct: 3 ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPA 61
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
+LGHE +GI+E++G VTE+Q GDHV+ Y C +C C +G C + G +G
Sbjct: 62 VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120
Query: 126 MNDRKSRFSINGKPIY--HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
+ + + + HF S+F+ Y + + + K+ P++ + LGCG+ TG
Sbjct: 121 S-EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA 179
Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
GA N KV P S +G G VGL+ AK GAS +I +DI + + AK G T
Sbjct: 180 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV 239
Query: 244 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
+N K D + ++TDGGV+++ E G+ +++ ++ G +VG G
Sbjct: 240 INSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT 296
Query: 304 ISTRPFQL-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
L + G+ G G + +P LV Y + + D+ V EIN+A
Sbjct: 297 AQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAA 355
Query: 363 RYMHGGDCLRCVLKM 377
G L+ ++K+
Sbjct: 356 IDSRKGITLKPIIKI 370
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380 | Back alignment and structure |
|---|
Score = 534 bits (1379), Expect = 0.0
Identities = 93/381 (24%), Positives = 158/381 (41%), Gaps = 27/381 (7%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ A V + N+PLV ++ +++ G + ++IL +C +D + + G+DP P IL
Sbjct: 16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 68 GHEAAGIVESVGEGVT-----EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
GHE AG V V ++PGD ++ C EC +CK K R
Sbjct: 76 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNR----K 131
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
+N S + H G +S + V+ + V K+ + LD + + C T
Sbjct: 132 VYGINRGCSEYP-------HLRGC--YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
A + G V + G G +GL A++ GA VI I P + A+ G
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242
Query: 242 EFVNPKDHD-KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
+N ++ + ++ ++D+T G G D+ E G+ + E +G G + GVA
Sbjct: 243 LTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAV 301
Query: 300 SGQEISTRPFQLVTGRVWKGTAFGG--FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE 357
+ PF++ V K F G S V + + + +TH + L E
Sbjct: 302 PQDPV---PFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKE 358
Query: 358 INEAFRYMHGGDCLRCVLKMQ 378
N+A M + L+ +L +
Sbjct: 359 ANKALELMESREALKVILYPE 379
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 1e-83
Identities = 83/370 (22%), Positives = 128/370 (34%), Gaps = 33/370 (8%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILG 68
KA E V+ D+ P GE+ +K+ LCH+D + + P LG
Sbjct: 2 KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
HE G V +GEGVT GD V C C C G+ N C +
Sbjct: 62 HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITP----- 116
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV-CLLGCGVPTGLGAVW 187
G + ++Y +V L G+
Sbjct: 117 --PGLGSPG----------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
+ PGS V G+G +G + +A A+RVI +D+D + A+ G V
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224
Query: 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
+ +LT G G F+ +G S + A + G +VG+ A
Sbjct: 225 --AGAADAIR-ELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVG 280
Query: 307 RPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMH 366
F + G +G +RS++ +V + + T TL E A+R +
Sbjct: 281 -FFMIPFGASVVTPYWG---TRSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLR 333
Query: 367 GGDCL-RCVL 375
G R V+
Sbjct: 334 EGSIRGRGVV 343
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 4e-72
Identities = 85/374 (22%), Positives = 145/374 (38%), Gaps = 45/374 (12%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA + + +V + P ++ +K+ +C TD + G+ P P LGHE
Sbjct: 25 KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPST-PPVTLGHE 82
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
GIV G V ++ PG + C C C++G+ NLC +R
Sbjct: 83 FCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLR------------- 129
Query: 131 SRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGLG 184
+G F++Y +V +I L C +
Sbjct: 130 ------------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----H 173
Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
V + + ++ GS VA+ G G +GL + A+ AGA+ VI K A+ G T V
Sbjct: 174 GV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV 232
Query: 245 NPKDHDKPIQQV--LVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
+P D ++ + V L GGVD EC G ++ + G GT VI+GV G+
Sbjct: 233 DPSAGD-VVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGE 290
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAF 362
++ PF ++ + G F + D I++D ++ ++L E +
Sbjct: 291 KVEIEPFDILFREL---RVLGSFINPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVI 347
Query: 363 RYMHGGDCLRCVLK 376
++ ++
Sbjct: 348 SNPAAAGEVKVLVI 361
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 3e-71
Identities = 97/386 (25%), Positives = 162/386 (41%), Gaps = 46/386 (11%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDP 59
S V KAA E NKPL IEDV +V ++I +CHTD + G
Sbjct: 7 FSQSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWH 66
Query: 60 EGL---FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
E L P LGHE G +E V EGV ++ GD VI C C++G+ C +
Sbjct: 67 ELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL 126
Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK---VC 173
+I+G F+++ SV K+ +K +
Sbjct: 127 EF------------PGLNIDG----------GFAEFMRTSHRSVIKLPKDISREKLVEMA 164
Query: 174 LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
L T AV + PG+ VA+ G+G +G + K + VI +D+ +K
Sbjct: 165 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224
Query: 233 DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGT 291
A+ G V+ + P++QV+ +LT G GV+ + + +G+ + + + G
Sbjct: 225 KLAERLGADHVVDAR--RDPVKQVM-ELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GR 280
Query: 292 SVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVT 350
+IVG G E+ +++ + ++G+ G + ++ LV ++ +++V
Sbjct: 281 LIIVGY---GGELRFPTIRVISSEVSFEGSLVG---NYVELHELVTLALQGKVRV---EV 331
Query: 351 HNMTLGEINEAFRYMHGGDCL-RCVL 375
L EIN+ + G+ L R VL
Sbjct: 332 DIHKLDEINDVLERLEKGEVLGRAVL 357
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 9e-69
Identities = 78/381 (20%), Positives = 136/381 (35%), Gaps = 54/381 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
K+ V + + + + EVR+KI + LC +D + +P LGH
Sbjct: 2 KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFK-NGAHYYPITLGH 59
Query: 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
E +G +++VG GV ++ PGD V C C C G + C K
Sbjct: 60 EFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYD------------ 107
Query: 130 KSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVPTGL 183
F+G+ F++Y VV +V + P++ + G+
Sbjct: 108 -------------FIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL---- 150
Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
A A+ V + G GT+GL + A A GA V IDI +K AK+FG +
Sbjct: 151 HAFHL-AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQT 209
Query: 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ 302
N + Q+ L + E G + A+E +VG
Sbjct: 210 FNSSEMS--APQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDL 266
Query: 303 EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMK-------KEIKVDEYVTHNMTL 355
+++ F + + K G PW ++ +++ ++ + H +
Sbjct: 267 HLTSATFGKI---LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSF 323
Query: 356 GEINEAFRYM-HGGDCLRCVL 375
+A R + + +L
Sbjct: 324 ESFAQAVRDIARNAMPGKVLL 344
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-66
Identities = 91/384 (23%), Positives = 148/384 (38%), Gaps = 59/384 (15%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
+A P + L + D V P GE+ +++ ++C TD + W D P +
Sbjct: 2 RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKW-DAWARGRIRPPLV 60
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE +G+VE+VG GV Q GDHV C C C++G ++C +
Sbjct: 61 TGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQ--------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTS---TFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
+G F++Y VV + P + + G V
Sbjct: 112 ----------------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH 155
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
T G V + G G +GL A +A+GA ++ D +P + A+ +
Sbjct: 156 TVY-----AGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA- 209
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
VNP + D + +V+ +T GV+ E GN + + L G G + I+G+ +
Sbjct: 210 DRLVNPLEED--LLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSD 266
Query: 301 GQEISTRPFQLVTGRVWKG-TAFGGFKSRSQVPW-----LVDKYMKKEIKVDEYVTHNMT 354
L V +G TAFG R W LV + + +TH +
Sbjct: 267 PIRFD-----LAGELVMRGITAFGIAGRRLWQTWMQGTALVY---SGRVDLSPLLTHRLP 318
Query: 355 LGEINEAFRYMHGGDCLRCVLKMQ 378
L EAF + G ++ +L +
Sbjct: 319 LSRYREAFGLLASGQAVKVILDPK 342
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-66
Identities = 95/383 (24%), Positives = 153/383 (39%), Gaps = 55/383 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
A + +P + +V V P GEV IK+L T++C TD + + + P I
Sbjct: 6 VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEW-NEWAQSRIKPPQI 64
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
+GHE AG V +G GV ++ GD+V C +C C+ G+ ++C +
Sbjct: 65 MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTK--------- 115
Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGVP 180
G T F++Y VV ++ K P + L LG V
Sbjct: 116 ----------------IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVD 159
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
T L G V + G G +GL AKA+GA VI + + + AK G
Sbjct: 160 TVLAGP------ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
+NP + D + + ++D+TDG GVD E G + L+ G ++G+
Sbjct: 214 DYVINPFEED--VVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYP 270
Query: 300 SGQEISTRPFQLVTGRVWKG-TAFGGFKSRSQVPW-LVDKYM-KKEIKVDEYVTHNM-TL 355
I L+ ++K T +G W V + + ++ +D +TH
Sbjct: 271 GKVTID--FNNLI---IFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGF 325
Query: 356 GEINEAFRYMHGGDCLRCVLKMQ 378
+ EAF M G + V ++
Sbjct: 326 DKYEEAFELMRAGKTGKVVFMLK 348
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 2e-65
Identities = 87/376 (23%), Positives = 150/376 (39%), Gaps = 43/376 (11%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------KDPEGL 62
+A E KPL ++++ V P+ +V IK+ +CH+D + G +D
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
P LGHE AG +E VG+ V GD V C +C+ G+ +LC R G
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR-WLG- 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
+ +G +++Y +V + + L C T
Sbjct: 120 ----------INFDG----------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159
Query: 183 LGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
AV A ++P + V G G +G + AKA + +IG+D+ + + AK G
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD 218
Query: 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
+N D P+ ++ +T+ GVD + + + + K G V+VG+ +
Sbjct: 219 YVINASMQD-PLAEIR-RITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA 275
Query: 301 GQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
P ++ + G+ G ++S ++ + + KV +T M L E NE
Sbjct: 276 DLHYHA-PLITLSEIQFVGSLVG---NQSDFLGIMR--LAEAGKVKPMITKTMKLEEANE 329
Query: 361 AFRYMHGGDCL-RCVL 375
A + + R VL
Sbjct: 330 AIDNLENFKAIGRQVL 345
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-65
Identities = 93/376 (24%), Positives = 149/376 (39%), Gaps = 45/376 (11%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCI 66
KAA+ + ++PL IEDV + PQ EV I+I +C TD W G + + P I
Sbjct: 3 KSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPII 62
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LGHE AG + VGE + +V+ GD+V+ C++C+ GK N+C G
Sbjct: 63 LGHENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQI-IPG----- 115
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+ NG FS+Y +V + L T +GA+
Sbjct: 116 ------QTTNG----------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAI 159
Query: 187 ---WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTE 242
+V V G+G + + + KA + ++GI K D A G
Sbjct: 160 RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY 219
Query: 243 FVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
KD + I LTDG G + + +G + + G ++VG+ G
Sbjct: 220 VSEMKDAESLIN----KLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGME--G 272
Query: 302 QEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
+ +S F + G+ +G S + + +V +IK + L +IN+
Sbjct: 273 KRVSLEAFDTAVWNKKLLGSNYG---SLNDLEDVVRLSESGKIKP---YIIKVPLDDINK 326
Query: 361 AFRYMHGGDCL-RCVL 375
AF + G R V+
Sbjct: 327 AFTNLDEGRVDGRQVI 342
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 6e-64
Identities = 88/387 (22%), Positives = 141/387 (36%), Gaps = 64/387 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF----PCI 66
+ V L +E+ + P EV +++ +C +D + W G F P +
Sbjct: 9 LSLV-VHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEY-GRIGNFIVKKPMV 66
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
LGHEA+G VE VG V ++PGD V P +FCK G+ NL +
Sbjct: 67 LGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPR-----ENDEFCKMGRYNLSPSIF---- 117
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL--- 174
F T ++ + K+ ++ L
Sbjct: 118 ---------------------FCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP 156
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
L G+ A V G V V G G +G+ AKA GA++V+ D+ + +
Sbjct: 157 LSVGI----HAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 211
Query: 235 AKNFGVTEFVNPKDHD-KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSV 293
AK G + + I + + + + EC G + ++A + G GT V
Sbjct: 212 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLV 270
Query: 294 IVGVAASGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTH 351
+VG+ + + P R KG F+ + P + K + V VTH
Sbjct: 271 LVGLGSEMTTV---PLLHAAIREVDIKGV----FRYCNTWPVAISMLASKSVNVKPLVTH 323
Query: 352 NMTLGEINEAFRYMHGGDCLRCVLKMQ 378
L + EAF G L+ +LK
Sbjct: 324 RFPLEKALEAFETFKKGLGLKIMLKCD 350
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 2e-61
Identities = 68/393 (17%), Positives = 127/393 (32%), Gaps = 59/393 (15%)
Query: 11 KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF------ 63
+ W + + +E+V + E+ IK+ +C +D + + +
Sbjct: 32 LGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTG 90
Query: 64 -PCILGHEAAGIVESVGEGVTE------VQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 116
P LGHE +G+V G + G+ V C C+ C G N C +
Sbjct: 91 FPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL 150
Query: 117 RGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-------DPQAPL 169
G +++G F++Y V + +
Sbjct: 151 NEL---GF---------NVDG----------AFAEYVKVDAKYAWSLRELEGVYEGDRLF 188
Query: 170 DKVCL---LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
L + + PG V + G G +GLA K AGAS+VI +
Sbjct: 189 LAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE 245
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECC 285
+ + AK G ++P + + ++D T+G G E G ++ +E
Sbjct: 246 PSEVRRNLAKELGADHVIDPTKEN--FVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEV 303
Query: 286 H--KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPW-LVDKYMKKE 342
+ + VA + +I R G + V M
Sbjct: 304 IWRARGINATVAIVARADAKIPLTGEVFQVRRA---QIVGSQGHSGHGTFPRVISLMASG 360
Query: 343 IKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVL 375
+ + + ++ +++ EI E + + L V
Sbjct: 361 MDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVT 393
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 3e-60
Identities = 90/378 (23%), Positives = 140/378 (37%), Gaps = 39/378 (10%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
K K + + + P + ++ L A C +D +T ILGHE
Sbjct: 2 KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHVI-PCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
A G V VG V + +PGD V+ P + G G G N
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVVVPAITP-DWRTSEVQRGYHQHSG---GMLAGWKFSN-- 114
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
+G F ++ V+ D+++A + + PL+ ++ + TG
Sbjct: 115 ----VKDG----------VFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAE 160
Query: 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247
A ++ G V V G+G VGL GA GA R+ + D A +G T+ +N K
Sbjct: 161 L-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK 219
Query: 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
+ D ++Q+L TDG GVD G+V A++ G V G I
Sbjct: 220 NGD-IVEQIL-KATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNI-- 274
Query: 307 RPFQLVTGRVWKG--TAFGGFKS--RSQVPWLVDKYMKKEIKVDEYVTHNMT-LGEINEA 361
V G GG R ++ L+D K + + VTH I +A
Sbjct: 275 -DIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKA 333
Query: 362 FRYM--HGGDCLRCVLKM 377
F M D ++ V+ +
Sbjct: 334 FMLMKDKPKDLIKPVVIL 351
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-59
Identities = 82/383 (21%), Positives = 131/383 (34%), Gaps = 61/383 (15%)
Query: 7 VITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTD--AYTWSGKDPEGLF 63
V T W +E VQ + GEV + + T +C +D + G
Sbjct: 12 VFTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKH---GCIGPM 68
Query: 64 ----PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
+LGHE+AG V +V V ++ GD V Q C C+ C +G+ N C +V
Sbjct: 69 IVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD-- 126
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL- 174
F+ T +Y V KI + +
Sbjct: 127 -----------------------FLSTPPVPGLLRRYVNHPAVWCHKI-GNMSYENGAML 162
Query: 175 --LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232
L + + A V G V + G G +GL AKAAGA ++ DID +
Sbjct: 163 EPLSVAL----AGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL 217
Query: 233 DRAKNFGVTEFVNPKDHDKP--IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGW 289
AK + + + +V+ G + EC G S + AA+ G
Sbjct: 218 KFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG- 276
Query: 290 GTSVIVGVAASGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDE 347
G ++GV + +I PF + R + ++ + P + + +
Sbjct: 277 GKVFVIGVGKNEIQI---PFMRASVREVDLQFQ----YRYCNTWPRAIRLVENGLVDLTR 329
Query: 348 YVTHNMTLGEINEAFRYMHGGDC 370
VTH L + +AF
Sbjct: 330 LVTHRFPLEDALKAFETASDPKT 352
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 1e-57
Identities = 108/387 (27%), Positives = 160/387 (41%), Gaps = 68/387 (17%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGH 69
KAAV + +PL I++V+ GEV ++I +CHTD + G P P I GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70 EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
E GIVE VG GVT ++ GD V IP + C C +C SG+ LC + A
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAG-------- 113
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGAVW 187
+S++G +++Y V KI ++ + C GV +
Sbjct: 114 ----YSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV-----TTY 154
Query: 188 N---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
+PG VA++G+G +G +AV + AKA G V+ +DI +K + AK G
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAV-QYAKAMGL-NVVAVDIGDEKLELAKELGADLV 212
Query: 244 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
VNP D + GGV + + ++A +G G V+VG+
Sbjct: 213 VNPLKEDAAKF---MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEMP 268
Query: 304 ISTRPFQLVTGRV-WKGTAFGG---------FKSRSQVPWLVDKYMKKEIKVDEYVTHNM 353
I F V + G+ G F + +V K I+V
Sbjct: 269 IP--IFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKV--------KTIIEV-------Q 311
Query: 354 TLGEINEAFRYMHGGDCL-RCVLKMQD 379
L +INE F M G R VL ++D
Sbjct: 312 PLEKINEVFDRMLKGQINGRVVLTLED 338
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-57
Identities = 94/375 (25%), Positives = 150/375 (40%), Gaps = 65/375 (17%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GK--DPEGLFPCIL 67
+AV L +E + P+ EV +++ + +C +D + + G+ D P ++
Sbjct: 6 LSAV-LYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-----IPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
GHEA+G V VG+ V ++ GD V +P CR C+FCK GK NLC +
Sbjct: 65 GHEASGTVVKVGKNVKHLKKGDRVAVEPGVP-----CRRCQFCKEGKYNLCPDLT----- 114
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTS----TFSQYTVVHDVSVAKIDPQAPLDKVCL---L 175
F T ++Y V K+ L++ L L
Sbjct: 115 --------------------FCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPL 154
Query: 176 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235
GV A A V+ G+ V V G G +GL AKA GA V+ P++ + A
Sbjct: 155 SVGV----HAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVA 208
Query: 236 KNFG--VTEFVNPKDHD-KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTS 292
KN G VT V+P + I + + + + +C GN + + G GT
Sbjct: 209 KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTL 267
Query: 293 VIVGVAASGQEISTRPFQLVTGR--VWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVT 350
++VG+ G ++ T P R K F+ + P ++ V + VT
Sbjct: 268 MLVGM---GSQMVTVPLVNACAREIDIKSV----FRYCNDYPIALEMVASGRCNVKQLVT 320
Query: 351 HNMTLGEINEAFRYM 365
H+ L + +AF
Sbjct: 321 HSFKLEQTVDAFEAA 335
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 2e-57
Identities = 99/378 (26%), Positives = 154/378 (40%), Gaps = 50/378 (13%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCIL 67
KAAV PL I++V V P G+V++KI + +CHTD + G P P I
Sbjct: 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIP 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G V +VG GV+ V+ GD V +P + C C+ C G LC K +
Sbjct: 62 GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTG------ 115
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPTGLGA 185
+S+NG + +Y V V + + ++ + C GV
Sbjct: 116 ------YSVNG----------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGV-----T 154
Query: 186 VWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
V+ PG V + G+G +G +AV + A+A G RV +DID K + A+ G
Sbjct: 155 VYKGLKVTDTRPGQWVVISGIGGLGHVAV-QYARAMGL-RVAAVDIDDAKLNLARRLGAE 212
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
VN +D D P + ++ GG + A+ +G GT + G+
Sbjct: 213 VAVNARDTD-PAAWLQKEI--GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGD 268
Query: 302 QEISTRPFQLVTGRV-WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINE 360
F +V + +G+ G RS + +D ++K L ++N+
Sbjct: 269 FGTP--IFDVVLKGITIRGSIVGT---RSDLQESLDFAAHGDVKAT---VSTAKLDDVND 320
Query: 361 AFRYMHGGDCL-RCVLKM 377
F + G R VL
Sbjct: 321 VFGRLREGKVEGRVVLDF 338
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 4e-57
Identities = 99/388 (25%), Positives = 156/388 (40%), Gaps = 66/388 (17%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
T K + +E + L +D+ V P+A E+ I + ++ +CHTD + W G P + P +
Sbjct: 5 TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVG 64
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE AG+V +GE V + GD+ I C C++C+ G + C +
Sbjct: 65 GHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSG------ 118
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT--GL 183
++ +G +F QY V A I L +V + C G+ L
Sbjct: 119 ------YTHDG----------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL 162
Query: 184 GAVWNTAKVEPGSIVAVFGLGTVGL---AVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
+A + G VA+ G GL AV + AKA G RV+GID K + ++ G
Sbjct: 163 ----KSANLMAGHWVAISGAAG-GLGSLAV-QYAKAMGY-RVLGIDGGEGKEELFRSIGG 215
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
F++ + VL TDGG + + + A+ GT+V+VG+ A
Sbjct: 216 EVFIDFTKEKDIVGAVL-KATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPA- 272
Query: 301 GQEISTRPFQLVTGRV-WKGTAFGG---------FKSRSQVPWLVDKYMKKEIKVDEYVT 350
G + + F V + G+ G F +R V K IKV
Sbjct: 273 GAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLV--------KSPIKVVG--- 321
Query: 351 HNMTLGEINEAFRYMHGGDCL-RCVLKM 377
L + E + M G + R V+
Sbjct: 322 ----LSTLPEIYEKMEKGQIVGRYVVDT 345
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 9e-54
Identities = 61/385 (15%), Positives = 121/385 (31%), Gaps = 49/385 (12%)
Query: 11 KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFP 64
KA + PN + ++DV G+++I+ ++ +C D +GK P+G
Sbjct: 2 KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
+LGHEA G+VE G GD V+P + C C+ C G+ + C AG+
Sbjct: 62 LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF-GEAGI 117
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPT- 181
D G ++ + KI + L +
Sbjct: 118 HKMD----------------GF--MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159
Query: 182 --------GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
+ V V G G +G+ + G + +P + +
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219
Query: 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG-NVSVMRAALECCHKGWGTS 292
+ N + ++ + G D + G +V+++ + + G
Sbjct: 220 QTVIEETK--TNYYNSSNGYDKLKDSV--GKFDVIIDATGADVNILGNVIPLLGRN-GVL 274
Query: 293 VIVGVAASGQ-EISTRPFQLVTGR--VWKGT-AFGGFKSRSQVPWLVDKYMKKEIKVDEY 348
+ G + SG + + Q + G + V L
Sbjct: 275 GLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKML 334
Query: 349 VTHNMTLGEINEAFRYMHGGDCLRC 373
+T +++ + E + + +
Sbjct: 335 ITKTVSINDEKELLKVLREKEHGEI 359
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 1e-53
Identities = 61/371 (16%), Positives = 116/371 (31%), Gaps = 50/371 (13%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCIL 67
KA V+ + P++GE ++ L +C TD +G PEG +L
Sbjct: 2 KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV--IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
GHEA G+V V TE++ GD V ++ + + ++ V
Sbjct: 62 GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL---LGCGV-PT 181
+G S++ + + +I P++ + L +
Sbjct: 120 A---------HG----------YMSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKAL 159
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKA--AGASRVIGI---DIDPKKFDRAK 236
+A S V G G++GL K G + + D D +
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE 219
Query: 237 NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296
T + + + + V +D+ +E G +++ G ++G
Sbjct: 220 ELDATYVDSRQTPVEDVPDVY-----EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLG 273
Query: 297 VAASGQ---EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYM--KKEIKVDEYVTH 351
V + + ++V G S + + +++ VT
Sbjct: 274 VPSDWAFEVDAGAFHREMVLHNK---ALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTG 330
Query: 352 NMTLGEINEAF 362
L E AF
Sbjct: 331 VHPLSEFEAAF 341
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 8e-45
Identities = 76/406 (18%), Positives = 145/406 (35%), Gaps = 62/406 (15%)
Query: 13 AVAWEPNKPLVIEDVQ----VAP--PQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFP 64
+V + + L +E V V +K++ T +C +D + + G+ +G
Sbjct: 5 SVVYHGTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGH-- 62
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGA 122
+LGHE G V G V + GD V + C C+ CK ++++C V
Sbjct: 63 -VLGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADL 121
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKI----DPQAPLDKVCLLG 176
G G + + G ++Y +V D + K + + L+
Sbjct: 122 G-----------AFGFDLKGWSGGQ--AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLIS 168
Query: 177 CGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
+PTG + A V+PGS V + G G VG A GA+ GA+ VI D +P++
Sbjct: 169 DILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227
Query: 237 NFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG--------------NVSVMRAA 281
+ G ++ ++ Q+ + VD + +G + +
Sbjct: 228 DAGFET-IDLRNSAPLRDQID-QILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSL 285
Query: 282 LECCHKGWGTSVIVGV------AASGQEISTRPFQLVTGRVW-KGTAFGGFKS--RSQVP 332
+ G G I G+ ++ + L G++W K + +
Sbjct: 286 FDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNR 344
Query: 333 WLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGGDCLRCVLK 376
L + + ++ +TL + + + G + V+
Sbjct: 345 HLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVID 390
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 4e-42
Identities = 90/407 (22%), Positives = 144/407 (35%), Gaps = 64/407 (15%)
Query: 13 AVAWEPNKPLVIEDVQVA-------PPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLF 63
V + + + ++ + V +K++ T +C +D + G+ GL
Sbjct: 5 GVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL- 63
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
+LGHE G V G V +Q GD V + C C+ CK T +C V A G
Sbjct: 64 --VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 121
Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQ--YTVVH--DVSVAKI----DPQAPLDKVCLL 175
G Y MG T Q Y +V D ++ K+ + + L
Sbjct: 122 -----------AYG---YVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCL 167
Query: 176 GCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235
+PTG A V PGS V V G G VGLA A A+ GA+ VI D++P + A
Sbjct: 168 SDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA 226
Query: 236 KNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG---------------NVSVMR 279
K G + +Q+ L VD + + +G +V+
Sbjct: 227 KAQGFEI-ADLSLDTPLHEQIA-ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLN 284
Query: 280 AALECCHKGWGTSVIVGV------AASGQEISTRPFQLVTGRVW-KGTAFGGFKS--RSQ 330
+ ++ G I G+ A + G W K +F ++
Sbjct: 285 SLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKY 343
Query: 331 VPWLVDKYMKKEIKVDEYV-THNMTLGEINEAFRYMHGGDCLRCVLK 376
L+ M I + E V ++L + + G + V+
Sbjct: 344 NRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVID 390
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-34
Identities = 89/369 (24%), Positives = 144/369 (39%), Gaps = 47/369 (12%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCIL 67
+A V P L + D+ V P EVR+++ AL H D + G L P +L
Sbjct: 2 RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVM 125
G + +G+V++VG GV PGD V+ C C+ C +G+ NLC ++ G G
Sbjct: 62 GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHG-- 119
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
T+++Y V+ + ++A ++ + T
Sbjct: 120 ----------------------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQM 157
Query: 186 VWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
V + V PG V V V +A + AK GA RVI K RAK G E V
Sbjct: 158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETV 216
Query: 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
N D + + LT G G D + G + ++ G G I G A+SG E
Sbjct: 217 NYTHPD--WPKEVRRLTGGKGADKVVDHTGALYFEG-VIKATANG-GRIAIAG-ASSGYE 271
Query: 304 ISTRPFQLVTGRV-WKGTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINE 360
+ + ++ G+ S+S++ ++ + ++K V + + L E
Sbjct: 272 GTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLKPVVGQV----LPLEAAAE 324
Query: 361 AFRYMHGGD 369
R +
Sbjct: 325 GHRLLEERR 333
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 32/257 (12%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
+ + KA A+ +PL D+ P +V+I+I + +CH+D + + +
Sbjct: 16 YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATG 121
+PC+ GHE G V +VG+ V + PGD V + C C+ C+ C+ G N C
Sbjct: 76 YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYC-------- 127
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKI-DPQAPLDKVCLLGC 177
+ N T +SQ VVH+ V +I PQ L V L C
Sbjct: 128 -------DHMTGTYNSP--TPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLC 178
Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFD 233
T ++ + PG V V G+G +G + + + A A GA V+ K +
Sbjct: 179 AGIT----TYSPLRHWQAGPGKKVGVVGIGGLGHMGI-KLAHAMGA-HVVAFTTSEAKRE 232
Query: 234 RAKNFGVTEFVNPKDHD 250
AK G E VN ++ D
Sbjct: 233 AAKALGADEVVNSRNAD 249
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 57/391 (14%), Positives = 120/391 (30%), Gaps = 69/391 (17%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG--------------- 61
+ K L + +V + EV + ++ +++ + ++ +
Sbjct: 45 DVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWAT 104
Query: 62 ---LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
+LG + +G+V G GV +PGDHVI + A E + G L + R
Sbjct: 105 RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEPATHGDGMLGTEQRA 163
Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
G ++Y VV + ++ +
Sbjct: 164 WGFETN-----------FG----------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202
Query: 179 VPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235
T + A+++ G IV ++G G +G + K G + + +K
Sbjct: 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV 261
Query: 236 KNFGVTEFVNPKDHD----------------KPIQQVLVDLTDGGVDYSFECIGNVSVMR 279
+ G +N + + + +++V+ D FE G
Sbjct: 262 RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR-VTFG 320
Query: 280 AALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKY 338
++ +G GT V G ++ R + + G+ + + +
Sbjct: 321 LSVIVARRG-GTVVTCGSSSGYLHTFDNRYL-WMKLKKIVGSHGA---NHEEQQATNRLF 375
Query: 339 MKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
+ ++ L E EA R +
Sbjct: 376 ESGAVVP--AMSAVYPLAEAAEACRVVQTSR 404
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 78/352 (22%), Positives = 128/352 (36%), Gaps = 43/352 (12%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-FPCILGHEAAGIVESVGE 80
L + + V ++ ++ L +L + D L FP + + +G+VE+VG+
Sbjct: 41 LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100
Query: 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPI 140
VT +PGD VI + + +G+T + G GV
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPA-YETLGGAHPGV---------------- 143
Query: 141 YHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200
S+Y V+ + + L C T A+ + G V V
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVV 195
Query: 201 FGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDL 260
G G V L + AKA GA VI +K DRA G +N + D + + L
Sbjct: 196 QGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLEED--WVERVYAL 252
Query: 261 TDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV-WK 318
T G D+ E G + + +L+ G ++GV G E+S L+ +
Sbjct: 253 TGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGV-LEGFEVSGPVGPLLLKSPVVQ 309
Query: 319 GTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGG 368
G + G R + LV + +K +D E+ EA ++ G
Sbjct: 310 GISVG---HRRALEDLVGAVDRLGLKPVIDMR----YKFTEVPEALAHLDRG 354
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-30
Identities = 63/410 (15%), Positives = 122/410 (29%), Gaps = 76/410 (18%)
Query: 2 STEGQVITCKAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK- 57
+ A + P K + ++DV V GE + ++ +++ + +T +
Sbjct: 35 TVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEP 94
Query: 58 -----------------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR 100
L ++G + AG+V G GV Q GD V+ +
Sbjct: 95 LSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVEL 154
Query: 101 ECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160
E + + G G ++ +V +
Sbjct: 155 ESSDG--HNDTMLDPEQRIWGFET----------NFG----------GLAEIALVKSNQL 192
Query: 161 AKIDPQAPLDKVCLLGCGVPTGLGAV--WNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA 217
++ G T + N A ++ G V ++G G +G + A A
Sbjct: 193 MPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAG 252
Query: 218 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLV---------------DLTD 262
GA I + P+K + + G ++ + +LT
Sbjct: 253 GA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTG 311
Query: 263 G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVTGRVWKGT 320
G +D FE G A++ KG GT + E R ++ + G+
Sbjct: 312 GEDIDIVFEHPGR-ETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYL-WMSLKRIIGS 368
Query: 321 AFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEAFRYMHGG 368
F + + K I + + +L + +A +H
Sbjct: 369 HFA---NYREAWEANRLIAKGRIHPTLSKVY----SLEDTGQAAYDVHRN 411
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 30/249 (12%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ K + ++ D +V I IL+ +CH+D ++ + EG++P I
Sbjct: 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIP 62
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE AGI++ VG+GV + + GD V + C+ C+ CK CK + C
Sbjct: 63 GHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFC------------- 109
Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGL 183
K F+ + +H +S VV + V +D APL+KV L C T
Sbjct: 110 --TKVVFTYDCLDSFH-DNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGIT-- 164
Query: 184 GAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
++ +KV G+ V V G G +G +AV + A A GA V + K A + G
Sbjct: 165 --TYSPLKFSKVTKGTKVGVAGFGGLGSMAV-KYAVAMGA-EVSVFARNEHKKQDALSMG 220
Query: 240 VTEFVNPKD 248
V F
Sbjct: 221 VKHFYTDPK 229
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 42/257 (16%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ A + + L + +VR K+L+ +CH+D ++ ++P +
Sbjct: 15 VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVP 74
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G V VG V +V GD V + C C C+ C + N C
Sbjct: 75 GHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYC------------- 121
Query: 127 NDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLGC-GVPT- 181
K + + GT T +S + V ++ + + PLD L C G+
Sbjct: 122 --PKMILTYASI---YHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVY 176
Query: 182 ------GLGAVWNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKKFDR 234
GL EPG + + GLG +G +AV + AKA G+ +V I P K +
Sbjct: 177 SPLKYFGLD--------EPGKHIGIVGLGGLGHVAV-KFAKAFGS-KVTVISTSPSKKEE 226
Query: 235 A-KNFGVTEFVNPKDHD 250
A KNFG F+ +D +
Sbjct: 227 ALKNFGADSFLVSRDQE 243
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 5e-29
Identities = 69/373 (18%), Positives = 122/373 (32%), Gaps = 83/373 (22%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK---DPEGLFPCILGHEAAG 73
+P K + ++++++A + +VR+K+L + +D G PE P + G+E
Sbjct: 37 DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE--LPAVGGNEGVA 94
Query: 74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 133
V +VG VT ++PGD VIP
Sbjct: 95 QVVAVGSNVTGLKPGDWVIPA--------------------------------------- 115
Query: 134 SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 193
G T+ V + ++ ++ PL LG T + + +++
Sbjct: 116 ---------NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQ 166
Query: 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI----DIDPKKFDRAKNFGVTEFVNPKD 248
PG V VG AV + A A G R I + K DR K+ G + ++
Sbjct: 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE 225
Query: 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR 307
+P ++ D + C+G L +G GT V G + Q +
Sbjct: 226 LRRP--EMKNFFKDMPQPRLALNCVGG-KSSTELLRQLARG-GTMVTYG-GMAKQPVVAS 280
Query: 308 PFQLVTGRVWKGTAFGGF------------KSRSQVPWLVDKYMKKEIKVDEYVTHNMTL 355
L+ K GF + + + L D + ++ + L
Sbjct: 281 VSLLIF----KDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTA--PACSQVPL 334
Query: 356 GEINEAFRYMHGG 368
+ A
Sbjct: 335 QDYQSALEASMKP 347
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 4e-28
Identities = 65/262 (24%), Positives = 96/262 (36%), Gaps = 38/262 (14%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
M A +P+ L + +V I+I+ +CHTD +
Sbjct: 1 MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60
Query: 61 GLFPCILGHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGA 119
+P + GHE G V VG V++ GD V + C C C C+ C
Sbjct: 61 SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYC------ 114
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLLG 176
K +S N + G T F++ TVVH V KI +++ L
Sbjct: 115 ---------PKKIWSYNDV---YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLL 162
Query: 177 CGVPTGLGAV------WNTAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDP 229
C T V + + PG + GLG VG + V + AKA G V I
Sbjct: 163 CAGVT----VYSPLSHFGLKQ--PGLRGGILGLGGVGHMGV-KIAKAMGH-HVTVISSSN 214
Query: 230 KKFDRA-KNFGVTEFVNPKDHD 250
KK + A ++ G ++V D
Sbjct: 215 KKREEALQDLGADDYVIGSDQA 236
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-25
Identities = 58/378 (15%), Positives = 115/378 (30%), Gaps = 68/378 (17%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DP 59
MS G++I P L +E + P + EV +++L + +D +G
Sbjct: 1 MSLHGKLIQFHKF--GNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH 58
Query: 60 EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA 119
P I G+E GIVE+VG V+ G V+P
Sbjct: 59 RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLP-------------------------L 93
Query: 120 TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
G G T+ +Y V I +
Sbjct: 94 RGEG------------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINP 129
Query: 180 PTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238
T T ++ ++ V +G A+ ++ R+I + + K +
Sbjct: 130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL 188
Query: 239 GVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297
G ++ + + +++LT+G G D + + IG G + +G
Sbjct: 189 GAAYVIDTSTAP--LYETVMELTNGIGADAAIDSIGGPDGNE-LAFSLRPN-GHFLTIG- 243
Query: 298 AASGQEISTRPFQL---VTGRVWKGTAFGGFKSRSQVPWLVDK----YMKKEIKVDEYVT 350
SG +++ V ++ + S + ++++ + V
Sbjct: 244 LLSGIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VH 302
Query: 351 HNMTLGEINEAFRYMHGG 368
L ++ A +
Sbjct: 303 STYELADVKAAVDVVQSA 320
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-25
Identities = 63/385 (16%), Positives = 109/385 (28%), Gaps = 75/385 (19%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
A + ++ V +V +++ A+ +D S + LG +
Sbjct: 13 TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAFLGTD 69
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
AG V +VG VT +Q GD V G
Sbjct: 70 YAGTVVAVGSDVTHIQVGDRV---------------------YGAQNEMCP--------- 99
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT--------- 181
FSQYTV AKI ++ L G+ T
Sbjct: 100 -----------RTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLG 148
Query: 182 -GLGAVWNTAKVEPGSIVAVF---GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237
L + V V G + + +G I P FD AK+
Sbjct: 149 LPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIAT-CSPHNFDLAKS 206
Query: 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV-- 295
G E + + + + Q + T + Y+ +CI NV + G V +
Sbjct: 207 RGAEEVFDYRAPN--LAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNP 264
Query: 296 -GVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVD------KYMKKEIKVDEY 348
A+ +++ T + L +G+ + R + + ++
Sbjct: 265 FPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRL 324
Query: 349 VTHNMT-----LGEINEAFRYMHGG 368
V H + I + + G
Sbjct: 325 VHHPLRVVQGGFDHIKQGMELVRKG 349
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 55/257 (21%), Positives = 89/257 (34%), Gaps = 34/257 (13%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
MS + A + E K P ++ IKI +C +D + +G
Sbjct: 1 MSYPEKF-EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN 59
Query: 61 GLFPCILGHEAAGIVESVGEGV-TEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRG 118
P ++GHE G V +G + ++ G V + C EC CK+ C
Sbjct: 60 MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC----- 114
Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTST---FSQYTVVHDVSVAKIDPQAPLDKVCLL 175
K + + + G + ++ Y VH+ V I P L
Sbjct: 115 ----------TKFVTTYSQP---YEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPL 161
Query: 176 GCGVPTGLGAVWN---TAKVEPGSIVAVFGLGTVG-LAVAEGAKAAGASRVIGIDIDPKK 231
CG T V++ PG V + GLG +G + +KA GA I +K
Sbjct: 162 LCGGLT----VYSPLVRNGCGPGKKVGIVGLGGIGSMGT-LISKAMGA-ETYVISRSSRK 215
Query: 232 FDRAKNFGVTEFVNPKD 248
+ A G ++ +
Sbjct: 216 REDAMKMGADHYIATLE 232
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-22
Identities = 70/361 (19%), Positives = 113/361 (31%), Gaps = 73/361 (20%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
L + A P E++++ + D Y SG P P LG EAAGIV VG G
Sbjct: 16 LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 75
Query: 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
V ++ GD V +Y
Sbjct: 76 VKHIKAGDRV------------------------------------------------VY 87
Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGA---VWNTAKVEPGS 196
+S + A + ++ L GL + T +++P
Sbjct: 88 AQSALGAYSSVHNIIADKAAILPAAISFEQAAASFL-----KGLTVYYLLRKTYEIKPDE 142
Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 255
G VGL + AKA GA ++IG +K A G + +N ++ D ++
Sbjct: 143 QFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYREEDLV-ER 200
Query: 256 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 314
+ ++T G V ++ +G +L+C + G V G +SG L
Sbjct: 201 LK-EITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFG-NSSGAVTGVNLGILNQK 256
Query: 315 RVWKGTAFGGF---KSRSQVPW----LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHG 367
T +R ++ L IKVD L + A +
Sbjct: 257 GSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILES 316
Query: 368 G 368
Sbjct: 317 R 317
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 9e-22
Identities = 68/287 (23%), Positives = 103/287 (35%), Gaps = 66/287 (22%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
L D + P V ++ L D Y SG P P LG E AG+VE+VG+
Sbjct: 16 LEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDE 75
Query: 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
VT + GD V Y
Sbjct: 76 VTRFKVGDRV------------------------------------------------AY 87
Query: 142 HFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV--CLLGCGVPTGLGA---VWNTAKVEPGS 196
+S+ V+ + ++ K+ ++ +L GL + T +V+PG
Sbjct: 88 GTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALML-----KGLTVQYLLRQTYQVKPGE 142
Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 255
I+ G VG + AKA GA ++IG P+K AK G E ++ D ++
Sbjct: 143 IILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSHEDVA-KR 200
Query: 256 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
VL +LTDG ++ +G +L+ G V G ASG
Sbjct: 201 VL-ELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPR-GLVVSFG-NASG 243
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 3e-21
Identities = 77/360 (21%), Positives = 123/360 (34%), Gaps = 73/360 (20%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
+ ED V E+ IK +T + + ++Y G P P +LG EA+G V + G+G
Sbjct: 23 IKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-PYVLGREASGTVVAKGKG 81
Query: 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIY 141
VT + GD V
Sbjct: 82 VTNFEVGDQVA------------------------------------------------- 92
Query: 142 HFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT-GLGA---VWNTAKVEPGS 196
++ STF+QY+ + V K+ P+ D+ L L A V+ G
Sbjct: 93 -YISNSTFAQYSKISSQGPVMKL-PKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGD 150
Query: 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQ 255
V +F G VGL + + K GA I + +K AK +G +N D +Q
Sbjct: 151 YVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKEDIL-RQ 208
Query: 256 VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTG 314
VL T+G GVD SF+ +G +L + G V G ASG +L
Sbjct: 209 VL-KFTNGKGVDASFDSVGK-DTFEISLAALKRK-GVFVSFG-NASGLIPPFSITRLSPK 264
Query: 315 RVW--KGTAFGGFKSRSQVPW----LVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG 368
+ + +G + + K++ + + L + A +
Sbjct: 265 NITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESR 322
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 4e-21
Identities = 45/335 (13%), Positives = 91/335 (27%), Gaps = 88/335 (26%)
Query: 7 VITCKAAVAWE---PNKPLVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGK---- 57
+IT +A + + P L + ++ EV +K L + + +D G
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 58 ------DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTN 111
G+E V VG V+ ++ GD VIP
Sbjct: 61 PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS----------------- 103
Query: 112 LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA---- 167
+ T+ + + +D K+ A
Sbjct: 104 -------------------------------HVNFGTWRTHALGNDDDFIKLPNPAQSKA 132
Query: 168 -------PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAG 218
+++ + T + + K+ PG + G VG ++ K
Sbjct: 133 NGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192
Query: 219 ASRVIGI----DIDPKKFDRAKNFGVTEFVNPKDHD-KPIQQVLVDLTD---GGVDYSFE 270
I + + K G T+ + ++ + + + G +
Sbjct: 193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALN 251
Query: 271 CIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS 305
C+G + G + G S Q ++
Sbjct: 252 CVGG-KSSTGIARKLNNN-GLMLTYG-GMSFQPVT 283
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 7e-20
Identities = 67/290 (23%), Positives = 103/290 (35%), Gaps = 67/290 (23%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILGHEAAGIVESV 78
V E+V+V P G+VR++ + D Y +G G P ++G EAA +VE V
Sbjct: 16 FVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV 75
Query: 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGK 138
G GVT+ G+ V
Sbjct: 76 GPGVTDFTVGERV----------------------------------------------- 88
Query: 139 PIYHFMGTSTFSQYTVVHDVSVAKI-----DPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 193
+SQ + + K+ L + L G T + T KV+
Sbjct: 89 -CTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGM---TAQYLLHQTHKVK 144
Query: 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252
PG V + G +G + A+ GA VIG +K + A+ G +N D
Sbjct: 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYSTQDFA 203
Query: 253 IQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
+ V ++T G GVD ++ IG ++ +L+C G G ASG
Sbjct: 204 -EVVR-EITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYG-HASG 248
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 8e-20
Identities = 70/373 (18%), Positives = 119/373 (31%), Gaps = 76/373 (20%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
KA A + P LV DV+ V + + +C D G+ P +
Sbjct: 23 KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEP-PFV 81
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
G E AG+V S EG + ++PGD V+ G
Sbjct: 82 PGIETAGVVRSAPEG-SGIKPGDRVM-------------------------AFNFIG--- 112
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+++ V ++ PQ + L T A
Sbjct: 113 ---------------------GYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAY 151
Query: 187 WNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245
++ G V V G G +G A + AK GA +VI + + K+ G +
Sbjct: 152 ARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLP 210
Query: 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQE 303
++ + + + T G GVD + IG A+ G ++VG A+G
Sbjct: 211 ---LEEGWAKAVREATGGAGVDMVVDPIGG-PAFDDAVRTL--ASEGRLLVVG-FAAG-G 262
Query: 304 ISTRPFQL-------VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLG 356
I T + G W + ++K + + ++ V+ + L
Sbjct: 263 IPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEGMRP--PVSARIPLS 320
Query: 357 EINEAFRYMHGGD 369
E +A + G
Sbjct: 321 EGRQALQDFADGK 333
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 59/375 (15%), Positives = 110/375 (29%), Gaps = 89/375 (23%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-----EGLF 63
KA + P L + D + ++ IK+ +L D T +G +
Sbjct: 8 KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
P LG++ +G V +G V V GD V G
Sbjct: 68 PSGLGYDFSGEVIELGSDVNNVNIGDKV---------------------MGIAGFPDHPC 106
Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGC 177
+++Y ++ + QA
Sbjct: 107 ------------------------CYAEYVCASPDTIIQK-LEKLSFLQA---------A 132
Query: 178 GVPTGLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
+PT A+V+ G +V + G VG + AK G VI +
Sbjct: 133 SLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHA 190
Query: 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSV 293
K G + +N + D + VD + +G V +++C + G V
Sbjct: 191 FLKALGAEQCINYHEED------FLLAISTPVDAVIDLVGG-DVGIQSIDCLKET-GCIV 242
Query: 294 IVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNM 353
V +G+ I + + ++ +L + ++++ ++
Sbjct: 243 SVPTITAGRVIEVAKQKHRRAFGLLKQF-----NIEELHYLGKLVSEDKLRI--EISRIF 295
Query: 354 TLGEINEAFRYMHGG 368
L E A + G
Sbjct: 296 QLSEAVTAHELLETG 310
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-19
Identities = 63/393 (16%), Positives = 111/393 (28%), Gaps = 85/393 (21%)
Query: 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE 60
+ Q + + D V P G++ ++ F + +D +G+
Sbjct: 20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP 79
Query: 61 G-LFPCILGHEAAGIVESVGEGVTE-VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG 118
P +G E G V ++G + G V
Sbjct: 80 SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA-------------------------- 113
Query: 119 ATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCG 178
+M +F++YTVV + P L
Sbjct: 114 ------------------------YMAPGSFAEYTVVPASIATPVPSVKPE----YLTLL 145
Query: 179 VP--TGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235
V T ++ + G V V G G + +K A VIG +K
Sbjct: 146 VSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFL 204
Query: 236 KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295
K+ G +N K + VL GVD +E +G ++ A++ G +++
Sbjct: 205 KSLGCDRPINYKTEP--VGTVLKQEYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVI 260
Query: 296 GVAASGQEISTRPFQLVTGR------VWKGTAFGGFKSRSQV-----------PWLVDKY 338
G + + V + K + GF + V
Sbjct: 261 GFIS--GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGD 318
Query: 339 MKKEIKVDEYVTHNMTLG--EINEAFRYMHGGD 369
+ E+ + + G I A YM+ G
Sbjct: 319 LVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGK 351
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 40/316 (12%), Positives = 76/316 (24%), Gaps = 65/316 (20%)
Query: 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGL 62
G T + L + V P +V IK+ ++ +D G+ P
Sbjct: 20 GYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVK 79
Query: 63 FPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
G E G + + G+ + G V G +
Sbjct: 80 -GRPAGFEGVGTIVAGGDEPYAKSLVGKRVAF----------------------ATGLSN 116
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
G ++++Y V + + + G +
Sbjct: 117 WG------------------------SWAEYAVAEAAACIPLLDTVRDED----GAAMIV 148
Query: 182 GLGAVWN---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237
K E + + + AK G R I ++ K+
Sbjct: 149 NPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKD 207
Query: 238 FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296
G +N K D + L ++ + + + A K +I G
Sbjct: 208 IGAAHVLNEKAPD--FEATLREVMKAEQPRIFLDAVTG-PLASAIFNAMPKR-ARWIIYG 263
Query: 297 VAASGQEISTRPFQLV 312
R +
Sbjct: 264 -RLDPDATVIREPGQL 278
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-17
Identities = 60/305 (19%), Positives = 107/305 (35%), Gaps = 70/305 (22%)
Query: 11 KAAVAWEPNKP--LVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPC 65
+A +E P L + D+ V P+ +V IK+ + + Y SG L P
Sbjct: 31 RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL-PY 89
Query: 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
G + AG++E+VG+ + + GD V G
Sbjct: 90 TPGSDVAGVIEAVGDNASAFKKGDRVF--------------------TSSTIS--GG--- 124
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGA 185
+++Y + D +V K+ + + G +
Sbjct: 125 -----------------------YAEYALAADHTVYKLPEKLDFKQ----GAAIGIPYFT 157
Query: 186 VW----NTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
+ ++A V+ G V V G G VGLA + A+A G +++G + G
Sbjct: 158 AYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGA 216
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
E N ++ + + G+D E + NV++ + L G G ++VG +
Sbjct: 217 HEVFNHREVN--YIDKIKKYVGEKGIDIIIEMLANVNLSK-DLSLLSHG-GRVIVVG-SR 271
Query: 300 SGQEI 304
EI
Sbjct: 272 GTIEI 276
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 1e-16
Identities = 70/392 (17%), Positives = 116/392 (29%), Gaps = 96/392 (24%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
+A V L + + PQ GE++I++ L D G +P P +
Sbjct: 5 RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKT-PLV 63
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
G E +GIVE++G+ V + GD V V A
Sbjct: 64 PGFECSGIVEALGDSVKGYEIGDRV---------------------MAFVNY--NA---- 96
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+++ V KI + P
Sbjct: 97 ----------------------WAEVVCTPVEFVYKIPDDMSFSE----AAAFPMNFVTA 130
Query: 187 WN----TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
+ A + G V V G VG AVA+ V G K + K+
Sbjct: 131 YVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKH-EAIKDSV-- 187
Query: 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301
+ ++ D Q + ++ GVD +C+ + + L GT ++ G +
Sbjct: 188 THLFDRNAD--YVQEVKRISAEGVDIVLDCLCGDNTGK-GLSLLKPL-GTYILYGSSNMV 243
Query: 302 QEISTRPFQL---------------------VTGRVWKGTAFGGFKS---RSQVPWLVDK 337
+ F + G F ++ R V L+
Sbjct: 244 TGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGL 303
Query: 338 YMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369
Y +K+IK V L E+ EA + +H
Sbjct: 304 YNQKKIKP--VVDSLWALEEVKEAMQRIHDRG 333
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 60/280 (21%), Positives = 92/280 (32%), Gaps = 80/280 (28%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--KDPEGLFPCILG 68
AAV E N P V+ + P G+V ++I + DA +G + P ILG
Sbjct: 9 IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
+ AG V +VG V + GD V G G G
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV---------------------FGLTGGVGGLQ----- 102
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP------QAPLDKVCLLGCGVPTG 182
G T +Q+ V +A P QA +P
Sbjct: 103 --------G----------THAQFAAVDARLLASK-PAALTMRQA---------SVLPLV 134
Query: 183 LGAVW----NTAKVEPGSIVAVF----GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
W + A+V+ G V + G+G V + + A A GA RV +
Sbjct: 135 FITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQI---ALARGA-RVFATA-RGSDLEY 189
Query: 235 AKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 273
++ G T ++ + + T G G D ++ +G
Sbjct: 190 VRDLGATPIDASREPE----DYAAEHTAGQGFDLVYDTLG 225
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 33/282 (11%), Positives = 61/282 (21%), Gaps = 95/282 (33%)
Query: 11 KAAVAWE---PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ W + + V + A ++ ++ + D +
Sbjct: 3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
G + AG++ VG V G V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRVA----------------------------YHT---- 90
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-----DPQA---PLDKVCLLGCGV 179
+G +F+++TV++ V + +A P
Sbjct: 91 ----SLKRHG----------SFAEFTVLNTDRVMTLPDNLSFERAAALPC---------- 126
Query: 180 PTGLGAVW---NTAKVEPGSIVAVFGLGTVG-----LAVAEGAKAAGASRVIGIDIDPKK 231
L A W + V + G G V + G S
Sbjct: 127 -PLLTA-WQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSA-------SLS 177
Query: 232 FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273
A GV + Q F+ +
Sbjct: 178 QALAAKRGVRHLY---REPSQVTQ--------KYFAIFDAVN 208
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 2e-14
Identities = 41/301 (13%), Positives = 72/301 (23%), Gaps = 90/301 (29%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG--------------------KDPEG 61
L ++ + P EV I+I + L +D G + PEG
Sbjct: 20 LSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEG 79
Query: 62 LF---------PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNL 112
+G+E AG+V G +
Sbjct: 80 AMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAA------------------ 121
Query: 113 CGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKV 172
+G + +SQY + + A
Sbjct: 122 -------------------------------IGGAMYSQYRCIPADQCLVLPEGATPAD- 149
Query: 173 CLLGCGVPTGLGAVWN---TAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228
G T ++E S + +G + + G +++ I
Sbjct: 150 ---GASSFVNPLTALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRK 205
Query: 229 PKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHK 287
++ D K G N Q L + G +F+ G + L C
Sbjct: 206 QEQADLLKAQGAVHVCNAASPT--FMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEA 263
Query: 288 G 288
Sbjct: 264 A 264
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 68/384 (17%), Positives = 108/384 (28%), Gaps = 94/384 (24%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
+ P +VI + GEV ++ + D G P+ I
Sbjct: 30 RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDA-SPI 88
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LG E +G + VG GV+ GD V CG G GA
Sbjct: 89 LGLELSGEIVGVGPGVSGYAVGDKV---------------------CGLANG--GA---- 121
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----TG 182
+++Y ++ + K +P T
Sbjct: 122 ----------------------YAEYCLLPAGQILPFPKGYDAVK----AAALPETFFTV 155
Query: 183 LGAVWNTAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
++ A + G V + G GT +G + A+A GA V K + + G
Sbjct: 156 WANLFQMAGLTEGESVLIHG-GTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGA 213
Query: 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300
+N + D V+ T GVD + IG + + K G I+
Sbjct: 214 KRGINYRSED--FAAVIKAETGQGVDIILDMIGA-AYFERNIASLAKD-GCLSIIAF-LG 268
Query: 301 GQEISTRPFQL-------VTGRVW-------KGTAFGGFKSRSQV-PWLVDKYMKKEIKV 345
G VTG K S+V P L +
Sbjct: 269 GAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDL--LSEVWPLLEA----GTVAP 322
Query: 346 DEYVTHNMTLGEINEAFRYMHGGD 369
+ ++ +A R + G
Sbjct: 323 --VIHKVFAFEDVADAHRLLEEGS 344
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 76/383 (19%), Positives = 119/383 (31%), Gaps = 87/383 (22%)
Query: 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCI 66
A +P P L +++V P GEV +K+ +AL D G+ P G I
Sbjct: 24 LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA-SNI 82
Query: 67 LGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVM 125
LG EA+G V +G G + GD + G G
Sbjct: 83 LGLEASGHVAELGPGCQGHWKIGDTA---------------------MALLPG--GG--- 116
Query: 126 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVP----T 181
+QY V + + I L + +P T
Sbjct: 117 -----------------------QAQYVTVPEGLLMPIPEGLTLTQ----AAAIPEAWLT 149
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
+ V+ G V + G VG A + + AGA + KK A+ G
Sbjct: 150 AFQLLHLVGNVQAGDYVLIHA-GLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG 207
Query: 240 VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298
N K D + + T G GV+ +CIG S + C G V+ G+
Sbjct: 208 AAAGFNYKKED--FSEATLKFTKGAGVNLILDCIGG-SYWEKNVNCLALD-GRWVLYGL- 262
Query: 299 ASGQEISTRPFQLVTGR--VWKGTAFGG----FKS------RSQVPWLVDKYMKKEIKVD 346
G +I+ F + + + +K Q+ + +
Sbjct: 263 MGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLP- 321
Query: 347 EYVTHNMTLGEINEAFRYMHGGD 369
+ + EI EA +YM
Sbjct: 322 -VLDRIYPVTEIQEAHKYMEANK 343
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 59/377 (15%), Positives = 95/377 (25%), Gaps = 103/377 (27%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK--DPEGLFPCILG 68
KA V PL + D+ + GEV +++ L D G P I G
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-PFIPG 60
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
E G+VE G G
Sbjct: 61 MEVVGVVE-----------GRRYA-------------------------ALVPQG----- 79
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
++ V ++ + ++ P +
Sbjct: 80 -------------------GLAERVAVPKGALLPLPEGLSPEE----AAAFPVSFLTAYL 116
Query: 189 ---TAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244
A+ PG V V G +G A + A+A G RV+ P+K G E
Sbjct: 117 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAA 175
Query: 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
+ + G+D E G + +L G G V +G A E
Sbjct: 176 TYAEVPE-------RAKAWGGLDLVLEVRG--KEVEESLGLLAHG-GRLVYIGAA--EGE 223
Query: 304 ISTRPFQLV----------TGRVWKGTAFGGFKSRSQV-PWLVDKYMKKEIKVDEYVTHN 352
++ P + ++ + P L ++ V
Sbjct: 224 VAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRL-------GRELRPVVGPV 276
Query: 353 MTLGEINEAFRYMHGGD 369
E AFR +
Sbjct: 277 FPFAEAEAAFRALLDRG 293
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 17 EPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVE 76
+ L+ ++ P ++ +++ ++ D P+G ++G++AAGIV
Sbjct: 35 TDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVS 94
Query: 77 SVGEGVTEVQPGDHV 91
+VG VT +PGD V
Sbjct: 95 AVGPDVTLFRPGDEV 109
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 62/406 (15%), Positives = 113/406 (27%), Gaps = 112/406 (27%)
Query: 11 KAAVAWEPNKPLVI---EDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---- 62
A V + K V+ +++ + EV +K+ ++ D SG L
Sbjct: 23 MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82
Query: 63 -----------FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTN 111
FP LG + +G+V G V +PGD V
Sbjct: 83 DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAV---------------- 126
Query: 112 LCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI-----DPQ 166
G T S++ VV V+ Q
Sbjct: 127 ------PPWKQG------------------------TLSEFVVVSGNEVSHKPKSLTHTQ 156
Query: 167 APLDKVCLLGCGVP----TGLGAVWNTAKVEPGSIVA--VF---GLGTVGLAVAEGAKAA 217
A +P T A+ + + V G VG + KA
Sbjct: 157 A---------ASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAW 207
Query: 218 GASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV 277
A V + + + G + ++ K +++ L L D+ + +G +
Sbjct: 208 DA-HVTAVC-SQDASELVRKLGADDVIDYKSGS--VEEQLKSL--KPFDFILDNVGGSTE 261
Query: 278 MRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDK 337
A K W + V + + ++ + G + G G + + +
Sbjct: 262 TWAPD--FLKKWSGATYVTL-VTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYR 318
Query: 338 YMK--------KEIK--VDE-----YVTHNMTLGEINEAFRYMHGG 368
+ +I VD + ++ EAF + G
Sbjct: 319 WAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERG 364
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 8 ITCKAAVAWEP-----NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
++ KA +P ++ + P+ E+ +KI ++ D +
Sbjct: 1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK-- 58
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHV 91
P +LG +A G+VESVG VT GD V
Sbjct: 59 APRVLGFDAIGVVESVGNEVTMFNQGDIV 87
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
LV E AP GEVRI + + DA G P LG E AG+V G G
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG---VASLGSEGAGVVVETGPG 282
Query: 82 VTEVQPGDHVI 92
VT + PGD V+
Sbjct: 283 VTGLAPGDRVM 293
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-06
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQV 256
+ V G G +G +A K + V D D GV T+ V+ KD + +
Sbjct: 8 ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL 67
Query: 257 L-VDLTDGGVDYSFECIGNVSVMRAALEC-CH 286
D + + +AA H
Sbjct: 68 GGFDAVISAAPFFL----TPIIAKAAKAAGAH 95
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-05
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
AV GLG G ++ + G V+ +DI+ +K + ++
Sbjct: 9 FAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYA 49
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239
V G G+ + AAG +V+ +D +K + ++ G
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEG 49
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 15/142 (10%)
Query: 151 QYTVVHDVSVAKIDPQ-APLDKVCLLGC-GVP--TGLGAVWNTAKVEPGSIVAVF---GL 203
++ S+ K+DPQ LG G+P T L + + GS +
Sbjct: 111 TKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAA 170
Query: 204 GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTD 262
G G + G SRV+GI +K + G +N K + + + L +
Sbjct: 171 GACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDN--VAEQLRESCP 228
Query: 263 GGVDYSFECIGNV--SVMRAAL 282
GVD F+ NV ++ +
Sbjct: 229 AGVDVYFD---NVGGNISDTVI 247
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
A+ +T G+ VAV GLG VG++VA A GA +V + R G+
Sbjct: 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME 200
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 5e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236
+ G G G + L + G RV ++I+P + ++
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSR 163
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 6e-04
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
V + G+G +G + +A +GI+I + + ++ G
Sbjct: 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGR 84
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243
A+ +T GS VAV GLG G+ +A A GA V R G+ F
Sbjct: 147 AIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVPF 204
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241
G V V GLG VG ++A A AGA +++ D D ++ A G T
Sbjct: 175 GLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT 220
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 100.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 100.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 100.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 100.0 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 100.0 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 100.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 100.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 100.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 100.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 100.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 100.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 100.0 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 100.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 100.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 100.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 100.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 100.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 100.0 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 100.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 100.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 100.0 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 100.0 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 100.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 100.0 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 100.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 100.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 100.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 100.0 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 100.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 100.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 100.0 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 100.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 100.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 100.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 100.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 100.0 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 100.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 100.0 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 100.0 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 100.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 100.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 100.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 100.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 100.0 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 100.0 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 100.0 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 100.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 100.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 100.0 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 100.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 100.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 100.0 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 100.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 100.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 100.0 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 100.0 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 100.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 100.0 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 100.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 100.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 100.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 100.0 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 100.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 100.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 100.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 99.89 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.15 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.91 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.83 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.65 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.63 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.56 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.42 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.14 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.09 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.09 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.06 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.05 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.0 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 97.85 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.85 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.79 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.74 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.74 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.69 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.66 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.66 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.65 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.6 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.6 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.55 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.52 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.51 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.5 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.49 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.42 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.39 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.34 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 97.29 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 97.27 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.26 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.24 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 97.23 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.23 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.18 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 97.15 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 97.15 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.11 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 97.09 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 97.08 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 97.06 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.06 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.04 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.03 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 97.02 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.02 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 97.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.99 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.98 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.98 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.97 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.96 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.95 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.95 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.94 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 96.94 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.94 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.93 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.92 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.92 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 96.92 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 96.92 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.91 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 96.91 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.9 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.9 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.9 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.89 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.88 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 96.88 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.88 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.88 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 96.87 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.87 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 96.86 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 96.86 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 96.85 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 96.84 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 96.83 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 96.83 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.83 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 96.82 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.82 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 96.82 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 96.82 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.81 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 96.8 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 96.79 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.78 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.78 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 96.77 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 96.76 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 96.76 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 96.75 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.75 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 96.75 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.75 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.74 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 96.74 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.74 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.74 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 96.74 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 96.74 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.73 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.72 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.72 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 96.72 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 96.71 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 96.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.69 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.69 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 96.68 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 96.68 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 96.68 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.67 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 96.67 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.66 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 96.66 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 96.66 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.65 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.65 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.65 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 96.64 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.64 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 96.63 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.63 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.63 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 96.63 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.62 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.62 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.62 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.62 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.61 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 96.61 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 96.61 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.6 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.6 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.6 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.59 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.59 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.59 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.59 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.58 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 96.58 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.58 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.58 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.58 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 96.58 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.57 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 96.57 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.57 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 96.57 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.56 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.56 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 96.56 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.55 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.55 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 96.55 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.54 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 96.53 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.53 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 96.51 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 96.51 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 96.51 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 96.5 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.5 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 96.5 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.49 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 96.48 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.48 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 96.47 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.46 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 96.45 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 96.45 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.45 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.45 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 96.45 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 96.44 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.44 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.44 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 96.44 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.43 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 96.43 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.42 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.41 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.41 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.41 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.39 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 96.39 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 96.38 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.38 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 96.38 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.37 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 96.37 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 96.36 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 96.36 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.36 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 96.36 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 96.35 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 96.35 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 96.35 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 96.34 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.34 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.34 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.34 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 96.33 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 96.33 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.33 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 96.33 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.32 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 96.32 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.31 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.31 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.31 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.29 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 96.29 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.29 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 96.26 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 96.25 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.25 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.25 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 96.24 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 96.24 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.23 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.23 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 96.23 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 96.23 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 96.23 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 96.22 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 96.22 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.21 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 96.21 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.21 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 96.21 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 96.2 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.19 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.19 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.19 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.18 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 96.18 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.17 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.16 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 96.16 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 96.16 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.15 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.14 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 96.12 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 96.12 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.11 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 96.11 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 96.11 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.11 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.09 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.09 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 96.08 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.07 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.06 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 96.06 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.05 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.05 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 96.05 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.04 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.03 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.02 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.01 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 96.01 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 96.01 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 96.01 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 96.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.0 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.99 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.97 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 95.97 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 95.97 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 95.97 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.96 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 95.96 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.95 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 95.94 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 95.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.93 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 95.91 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 95.9 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.9 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.89 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.88 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 95.87 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 95.85 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 95.85 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 95.83 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 95.83 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.82 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.82 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 95.82 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 95.82 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 95.81 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 95.81 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 95.81 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 95.8 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.8 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 95.79 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.79 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 95.79 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 95.78 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 95.78 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 95.78 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 95.77 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.77 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.76 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 95.76 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.75 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 95.73 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 95.73 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.72 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.71 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 95.7 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.7 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 95.69 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 95.68 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.67 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 95.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 95.66 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.66 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.66 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.66 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.65 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 95.65 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.64 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 95.64 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.62 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 95.62 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.62 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 95.62 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 95.62 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 95.62 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.61 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 95.6 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.59 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 95.57 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 95.56 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 95.55 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.55 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.55 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 95.55 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 95.55 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 95.54 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.5 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.5 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 95.49 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 95.48 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 95.47 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.47 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 95.47 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 95.47 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 95.46 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 95.45 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 95.45 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 95.45 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 95.44 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.42 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.41 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.41 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.4 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 95.38 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.38 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 95.38 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.37 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 95.36 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.36 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 95.35 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.34 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 95.33 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.33 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 95.32 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 95.31 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 95.29 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 95.28 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 95.28 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 95.27 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 95.23 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 95.22 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.21 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.17 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 95.17 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 95.16 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 95.15 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.14 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 95.14 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 95.13 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 95.13 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.12 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 95.11 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 95.1 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.09 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.06 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 95.06 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 95.04 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 95.04 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 95.02 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 95.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 95.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 94.99 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.99 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 94.97 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.97 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.96 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.95 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.95 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 94.94 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 94.94 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 94.94 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.93 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 94.92 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 94.92 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 94.91 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 94.9 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 94.9 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.88 |
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-67 Score=498.45 Aligned_cols=377 Identities=90% Similarity=1.476 Sum_probs=342.3
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
++++|++|||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|..+..++|.++|||++|+|+++|++|
T Consensus 2 ~~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v 81 (378)
T 3uko_A 2 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 81 (378)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTC
T ss_pred CcccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCC
Confidence 45678999999999999999999999999999999999999999999999999987777889999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
++|++||||++.+..+|+.|.+|+++++++|.+......+|....+|...+..+|.+.++.++.|+|+||+.+|++.+++
T Consensus 82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 161 (378)
T 3uko_A 82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAK 161 (378)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEE
Confidence 99999999999999999999999999999999876544456555667667778888888888889999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+|+++++++||++++++.|||+++++.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++
T Consensus 162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T 3uko_A 162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE 241 (378)
T ss_dssp CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence 99999999999999999999999889999999999999999999999999999999988999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeec
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF 322 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (379)
++++++.+.++.+.+++.+++++|+||||+|++..+..+++++++++|+++.+|.......+++++..++.++++.++.+
T Consensus 242 vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~ 321 (378)
T 3uko_A 242 FVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF 321 (378)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG
T ss_pred EEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhcCcEEEEEEe
Confidence 99987433789999999998899999999999888999999999922999999986655566666666666888998877
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecCC
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 379 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~~ 379 (379)
+.+...++++++++++.++++++.++++++|||+|+++||+.+.+++..|+||++++
T Consensus 322 ~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~ 378 (378)
T 3uko_A 322 GGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK 378 (378)
T ss_dssp GGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred cCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence 765566789999999999999998999999999999999999999887799999875
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=472.84 Aligned_cols=372 Identities=52% Similarity=0.900 Sum_probs=315.4
Q ss_pred CCCCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCC
Q 016978 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 80 (379)
|++++.|++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|..+ ..+|.++|||++|+|+++|+
T Consensus 1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~ 79 (373)
T 1p0f_A 1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGA 79 (373)
T ss_dssp -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECT
T ss_pred CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECC
Confidence 89999999999999999987799999999999999999999999999999999998765 56799999999999999999
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
+|++|++||||++.+..+|+.|.+|++++++.|.+.....++|.. .+|...+...|...++....|+|+||+.+|++.+
T Consensus 80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~ 158 (373)
T 1p0f_A 80 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV 158 (373)
T ss_dssp TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred CCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccc-cCCccccccCCcccccccCCccceeEEEEchhhE
Confidence 999999999999999999999999999999999986532111221 1221111112223333344579999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+++|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+
T Consensus 159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 237 (373)
T 1p0f_A 159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 237 (373)
T ss_dssp EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 9999999999 999999999999998888999999999999999999999999999999789999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCC-ceEEEEccCCCCcccccCcceeeeccEEEe
Q 016978 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQLVTGRVWKG 319 (379)
Q Consensus 241 ~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~ 319 (379)
++++++++.+.++.+.+++.+++++|+|||++|....+..+++++++ + |+++.+|.......+++++..++...++.+
T Consensus 238 ~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g 316 (373)
T 1p0f_A 238 TECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDPLLLLTGRSLKG 316 (373)
T ss_dssp SEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECTHHHHTTCEEEE
T ss_pred cEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCHHHhccCceEEe
Confidence 99998864224688889888877999999999998889999999999 7 999999976543344555554444228888
Q ss_pred eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 320 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+.++.+. .+++++++++++++++++.++++++|||+|+++|++.+++++..|+||++
T Consensus 317 ~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 1p0f_A 317 SVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY 373 (373)
T ss_dssp CSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred eccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence 7654332 26899999999999999888899999999999999999888767999975
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-62 Score=465.41 Aligned_cols=371 Identities=53% Similarity=0.929 Sum_probs=314.1
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+...|++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|..+.. +|.++|||++|+|+++|++|
T Consensus 2 ~~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v 80 (374)
T 2jhf_A 2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGV 80 (374)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTC
T ss_pred CCCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCC
Confidence 44567899999999999789999999999999999999999999999999999876543 79999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
++|++||||++.+..+|+.|.+|+++++++|.+.....++|.. .+|...+...|.+.++....|+|+||+.+|++.+++
T Consensus 81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ 159 (374)
T 2jhf_A 81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK 159 (374)
T ss_dssp CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred CCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccc-cCCcccccccccccccccCCccCeeEEEEchHHeEE
Confidence 9999999999999999999999999999999986532111221 122111111223333334457999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++
T Consensus 160 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~ 239 (374)
T 2jhf_A 160 IDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239 (374)
T ss_dssp CCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred CCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCce
Confidence 99999999999999999999999888899999999999999999999999999999978999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCC-ceEEEEccCCCCcccccCcceeee-ccEEEee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQLVT-GRVWKGT 320 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~ 320 (379)
++++++...++.+.+++.+++++|+|||++|.+..+..+++++++ + |+++.+|........++++..++. + ++.++
T Consensus 240 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~ 317 (374)
T 2jhf_A 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGA 317 (374)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEEC
T ss_pred EecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHHHHhcCC-eEEEe
Confidence 998764224688888888877999999999998889999999999 7 999999976543344555554443 5 88887
Q ss_pred ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 321 AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+++.+...+++++++++++++++++.++++++|||+|+++|++.+.+++..|+||+|
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 374 (374)
T 2jhf_A 318 IFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence 655433346899999999999999888899999999999999999988867999975
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=466.33 Aligned_cols=371 Identities=69% Similarity=1.144 Sum_probs=313.6
Q ss_pred CccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 016978 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
+.|++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|..+...+|.++|||++|+|+++|++|++
T Consensus 2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~ 81 (373)
T 2fzw_A 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK 81 (373)
T ss_dssp CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence 46789999999999977999999999999999999999999999999999987665578999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||++.+..+|+.|.+|++++++.|.+.....++|.. .+|...+...|...+++...|+|+||+++|++.++++|
T Consensus 82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP 160 (373)
T 2fzw_A 82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID 160 (373)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccc-cCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence 99999999999999999999999999999875421001211 12211111122333333445799999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++
T Consensus 161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi 240 (373)
T 2fzw_A 161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI 240 (373)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence 99999999999999999999988889999999999999999999999999999997899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCC-ceEEEEccCCCCcccccCcceeeeccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (379)
++++...++.+.+++.+++++|+|||++|....+..+++++++ + |+++.+|.......+++++..++...++.++.++
T Consensus 241 ~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~ 319 (373)
T 2fzw_A 241 NPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFG 319 (373)
T ss_dssp CGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred ccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCHHHHhcCCEEEEeccC
Confidence 8764224688888888877999999999998889999999999 7 9999999764333445555544442288887655
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
.+...+++++++++++++++++.++++++|||+|+++|++.+++++..|+||++
T Consensus 320 ~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 373 (373)
T 2fzw_A 320 GWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373 (373)
T ss_dssp GCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence 433346799999999999999888899999999999999999988777999975
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-62 Score=464.57 Aligned_cols=371 Identities=57% Similarity=1.036 Sum_probs=313.2
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccc-cccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
|..+|++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++ .+.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~ 80 (374)
T 1cdo_A 2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG 80 (374)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence 45678999999999998889999999999999999999999999999999 8888765 567999999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
|++|++||||++.+..+|+.|.+|+++++++|.+.....++|.. .+|...+...|...++....|+|+||+.+|++.++
T Consensus 81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~ 159 (374)
T 1cdo_A 81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA 159 (374)
T ss_dssp CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccc-cCCccccccCCcccccccCCccceeEEEEchhheE
Confidence 99999999999999999999999999999999976532111221 12211111122223333345799999999999999
Q ss_pred ecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++
T Consensus 160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 239 (374)
T 1cdo_A 160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239 (374)
T ss_dssp ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence 99999999999999999999999988889999999999999999999999999999997899999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCC-ceEEEEccCCCCcccccCcceeeeccEEEee
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQLVTGRVWKGT 320 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~ 320 (379)
+++++++...++.+.+++.+++++|+|||++|.+..+..+++++++ + |+++.+|.... ..+++++..++...++.++
T Consensus 240 ~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~ 317 (374)
T 1cdo_A 240 DFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDVATRPIQLIAGRTWKGS 317 (374)
T ss_dssp EEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCEEECHHHHHTTCEEEEC
T ss_pred eEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCcccCHHHHhcCCeEEEE
Confidence 9998764224688888888877999999999998889999999999 7 99999998643 2344444444442278887
Q ss_pred ecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 321 AFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
.++.+...+++++++++++++++++.++++++|||+|+++|++.+++++..|+||+|
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~ 374 (374)
T 1cdo_A 318 MFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred ecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence 655433346799999999999999888899999999999999999988877999975
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-62 Score=464.46 Aligned_cols=369 Identities=49% Similarity=0.893 Sum_probs=310.8
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+...|++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++.+.|. +...+|.++|||++|+|+++|++|
T Consensus 2 ~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v 80 (376)
T 1e3i_A 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGV 80 (376)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTC
T ss_pred CCCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCC
Confidence 3466889999999999877999999999999999999999999999999999886 445689999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCcc----CccccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVR----GATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~----~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
+++++||||++.+..+|+.|.+|++++++.|.+.. ...+.|.. .+|...+..+|...++....|+|+||+.+|++
T Consensus 81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~-~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~ 159 (376)
T 1e3i_A 81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELM-EDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEA 159 (376)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred ccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCcccccccccccc-ccCccccccCCcccccccCCccceeEEEeccc
Confidence 99999999999999999999999999999998754 10001211 11211111122222333345799999999999
Q ss_pred ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc
Q 016978 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 159 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l 238 (379)
.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++
T Consensus 160 ~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 239 (376)
T 1e3i_A 160 NLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239 (376)
T ss_dssp GEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred cEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 99999999999999999999999999988889999999999999999999999999999997899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCC-ceEEEEccCCCCcccccCcceeee-ccE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGW-GTSVIVGVAASGQEISTRPFQLVT-GRV 316 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~-~~~ 316 (379)
|+++++++++.+.++.+.+++.+++++|+|||++|....+..+++++++ + |+++.+|... ...++++..++. + +
T Consensus 240 Ga~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~~--~~~~~~~~~~~~~~-~ 315 (376)
T 1e3i_A 240 GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAKV--DEMTIPTVDVILGR-S 315 (376)
T ss_dssp TCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCSS--SEEEEEHHHHHTTC-E
T ss_pred CCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCCC--CccccCHHHhhccC-e
Confidence 9999998864224688888888877999999999998889999999999 7 9999999832 334444444443 5 8
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+.++.++.....+++++++++++++++++.++++++|||+|+++|++.+.+++..|+||++
T Consensus 316 i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~ 376 (376)
T 1e3i_A 316 INGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF 376 (376)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence 8887654433446899999999999999888899999999999999999988866999975
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-61 Score=457.51 Aligned_cols=365 Identities=29% Similarity=0.521 Sum_probs=306.5
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
+++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|++|+
T Consensus 4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~ 82 (371)
T 1f8f_A 4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ 82 (371)
T ss_dssp CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence 56799999999987799999999999999999999999999999999998765 45799999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccc-cCCCcc-cccCCcceeeeeEEecCcceEecC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPI-YHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~-~~~~~~-~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+||||++.+ .+|+.|.+|++++++.|.+.......|.. .+|...+. .+|... .+....|+|+||+.+|++.++++|
T Consensus 83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP 160 (371)
T 1f8f_A 83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT 160 (371)
T ss_dssp TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred CCCEEEecC-CCCCCChhhhCcCcccccccccccccccc-ccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence 999999999 99999999999999999876421111100 11100000 001000 011234699999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus 161 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi 240 (371)
T 1f8f_A 161 KDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240 (371)
T ss_dssp TTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEe
Confidence 99999999999999999999988889999999999999999999999999999997799999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
++++ .++.+.+++.+++++|+|||++|.+..++.++++++++ |+++.+|.........+++..++. ++++.+++++
T Consensus 241 ~~~~--~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~ 317 (371)
T 1f8f_A 241 NSKT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG 317 (371)
T ss_dssp ETTT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred cCCc--cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCC
Confidence 9876 67888898888779999999999988899999999996 999999986533334555444433 8888888765
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
.....++++++++++++|++++.+++++ |||+|+++|++.+++++..|+||+++
T Consensus 318 ~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~ 371 (371)
T 1f8f_A 318 SGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA 371 (371)
T ss_dssp GSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred CCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence 4333467899999999999998888888 99999999999999887679999874
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-60 Score=450.86 Aligned_cols=341 Identities=24% Similarity=0.382 Sum_probs=302.4
Q ss_pred ccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCc
Q 016978 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
.|.+|||+++.+++. ++++++|.|+|+++||+|||.+++||++|++.+.|.+ ...+|.++|||++|+|+++|+++++|
T Consensus 20 ~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~-~~~~p~v~G~e~~G~V~~vG~~v~~~ 97 (370)
T 4ej6_A 20 FQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEF-PSTPPVTLGHEFCGIVVEAGSAVRDI 97 (370)
T ss_dssp -CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSS-CCCSSEECCCSEEEEEEEECTTCCSS
T ss_pred cchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCC-CCCCCeecCcceEEEEEEECCCCCCC
Confidence 347799999999986 9999999999999999999999999999999999876 34679999999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||||++.+..+|+.|.+|..++++.|.+... +|.. .+| +|+||+.+|++.++++|+
T Consensus 98 ~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~~P~ 155 (370)
T 4ej6_A 98 APGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIH-RDG------------------GFAEYVLVPRKQAFEIPL 155 (370)
T ss_dssp CTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGEEEECT
T ss_pred CCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCC-CCC------------------cceEEEEEchhhEEECCC
Confidence 999999999999999999999999999998764 3432 344 999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
++++++|| ++.++.+||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++
T Consensus 156 ~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 156 TLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233 (370)
T ss_dssp TSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEEC
T ss_pred CCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEC
Confidence 99999998 555899999986 8889999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCCchHHHHHHH---hcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeee
Q 016978 246 PKDHDKPIQQVLVD---LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTA 321 (379)
Q Consensus 246 ~~~~~~~~~~~i~~---~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~ 321 (379)
+++ .++.+.+++ .+++++|+||||+|.+..+..++++++++ |+++.+|........++++..++. ++++.+++
T Consensus 234 ~~~--~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~ 310 (370)
T 4ej6_A 234 PSA--GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGSF 310 (370)
T ss_dssp TTS--SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEECC
T ss_pred CCC--cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEec
Confidence 977 788888888 77779999999999888899999999996 999999986554455666655554 88888876
Q ss_pred cCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCe-e-EEEEecCC
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDC-L-RCVLKMQD 379 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~-~-Kvvi~~~~ 379 (379)
... .+++++++++++|++++.++++++|||+|+++|++.+.+++. . |+|+++++
T Consensus 311 ~~~----~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~ 366 (370)
T 4ej6_A 311 INP----FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER 366 (370)
T ss_dssp SCT----TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred cCh----HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence 542 569999999999999999999999999999999999988774 3 88888753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-59 Score=437.92 Aligned_cols=339 Identities=22% Similarity=0.310 Sum_probs=296.9
Q ss_pred ceeeeeecCCCCeEEEEeeCCC-CCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~-~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||++++++|. ++++|+|.|+ ++||||||||.|+|||++|++.+.|..+ .++|.++|||++|+|+++|++|+++++|
T Consensus 1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~G 78 (346)
T 4a2c_A 1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPG 78 (346)
T ss_dssp CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCC
Confidence 89999999998 9999999998 5799999999999999999999888654 4589999999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|||++.+...|+.|.+|..++++.|.+... +|.. .+| +|+||+.+|++.++++|++++
T Consensus 79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~l~ 136 (346)
T 4a2c_A 79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSR-RDG------------------GFAEYIVVKRKNVFALPTDMP 136 (346)
T ss_dssp CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred CeEEeeeccCCCCcccccCCccccCCCccc---ccCC-CCc------------------ccccccccchheEEECCCCCC
Confidence 999999999999999999999999998764 3433 444 999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+++||+++ .++++++ +....++++|++|||+|+|++|++++|+|+++|+.++++++++++|+++++++|+++++++++
T Consensus 137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence 99999876 4455555 568889999999999999999999999999999978889999999999999999999999987
Q ss_pred CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCccccc-Cccee-eeccEEEeeecCCC
Q 016978 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST-RPFQL-VTGRVWKGTAFGGF 325 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~ 325 (379)
.++.+.++..+++ ++|+|+|++|.+.+++.++++++++ |+++.+|....+..... +...+ .+++++.|++....
T Consensus 215 --~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~ 291 (346)
T 4a2c_A 215 --MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYS 291 (346)
T ss_dssp --SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCC
T ss_pred --CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEecccc
Confidence 7788888888887 9999999999989999999999996 99999998755433222 22222 33888988865432
Q ss_pred --cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 326 --KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 326 --~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...++++++++++++|++++.++|+++|||+|+++|++.+++++.. |+||+.
T Consensus 292 ~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 292 SPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp SSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred CcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 2345799999999999999999999999999999999999998876 999863
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=437.45 Aligned_cols=335 Identities=28% Similarity=0.472 Sum_probs=297.7
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
+|||+++++++++++++++|.|+|+++||+|||.+++||++|++.+.|.++. .++|.++|||++|+|+++|+++++|++
T Consensus 2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v 81 (340)
T 3s2e_A 2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE 81 (340)
T ss_dssp EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence 5999999999888999999999999999999999999999999999998765 368999999999999999999999999
Q ss_pred CCEE-eecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 88 GDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 88 Gd~V-~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
|||| +.++..+|+.|.+|++++++.|.+... .|.. .+| +|+||+.+|++.++++|++
T Consensus 82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~ 139 (340)
T 3s2e_A 82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYS-VNG------------------GYGEYVVADPNYVGLLPDK 139 (340)
T ss_dssp TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEECCTT
T ss_pred CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCC-CCC------------------cceeEEEechHHEEECCCC
Confidence 9999 456788999999999999999998664 3332 344 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 99999999999999999987 77799999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
++ .++.+.+++ +.+++|++||++|+...++.++++++++ |+++.+|.... ..+++...++. ++++.++...
T Consensus 218 ~~--~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~-- 289 (340)
T 3s2e_A 218 RD--TDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPG--DFGTPIFDVVLKGITIRGSIVG-- 289 (340)
T ss_dssp TT--SCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSS--EEEEEHHHHHHTTCEEEECCSC--
T ss_pred CC--cCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCC--CCCCCHHHHHhCCeEEEEEecC--
Confidence 87 778888888 4458999999999989999999999996 99999998643 33444433333 7888887654
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
..++++++++++++|++++. .++|+|+|+++|++.+++++.. |+||++++
T Consensus 290 -~~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~ 340 (340)
T 3s2e_A 290 -TRSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR 340 (340)
T ss_dssp -CHHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred -CHHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 34689999999999999863 5678999999999999999976 99999875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-59 Score=439.45 Aligned_cols=342 Identities=24% Similarity=0.343 Sum_probs=298.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccc-cccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.++++ ++++++|.|+|+++||+|||.+++||++|++ ++.|..+ .++|.++|||++|+|+++|+++++|++|
T Consensus 1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vG 78 (352)
T 3fpc_A 1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPG 78 (352)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCC
Confidence 89999999999 9999999999999999999999999999999 5577654 3579999999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc--ceEecCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV--SVAKIDPQ 166 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~iP~~ 166 (379)
|||++.+..+|+.|.+|+.++.+.|.+......+|.. .+ |+|+||+.+|+. .++++|++
T Consensus 79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~-~~------------------G~~aey~~v~~~~~~~~~iP~~ 139 (352)
T 3fpc_A 79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNV-KD------------------GVFGEFFHVNDADMNLAHLPKE 139 (352)
T ss_dssp CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTT-BC------------------CSSBSCEEESSHHHHCEECCTT
T ss_pred CEEEEccccCCCCchhhcCCCcCCccccccccccccC-CC------------------CcccceEEeccccCeEEECCCC
Confidence 9999999999999999999999999865432112211 23 499999999976 99999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||+++.++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++
T Consensus 140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINY 218 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECG
T ss_pred CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcC
Confidence 99999999998999999986 88899999999999999999999999999999789999999999999999999999998
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee---eeccEEEeeec
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL---VTGRVWKGTAF 322 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~---~~~~~i~~~~~ 322 (379)
++ .++.+.+++.+++ ++|+|||++|++..++.++++++++ |+++.+|.......+++....+ ++++++.++..
T Consensus 219 ~~--~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 295 (352)
T 3fpc_A 219 KN--GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLC 295 (352)
T ss_dssp GG--SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCC
T ss_pred CC--cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeec
Confidence 77 7899999999988 9999999999988899999999996 9999999865444444433322 23667776654
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeee-cchHHHHHHHHhcCCe--eEEEEecC
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYMHGGDC--LRCVLKMQ 378 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~-~~~i~~A~~~~~~~~~--~Kvvi~~~ 378 (379)
.. ...+++++++++++|++++.++++++|+ |+|+++||+.+.+++. .|+||+++
T Consensus 296 ~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~ 352 (352)
T 3fpc_A 296 PG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352 (352)
T ss_dssp CC--HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred cC--chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence 22 2467999999999999999889999999 9999999999998654 49999874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-59 Score=440.97 Aligned_cols=342 Identities=23% Similarity=0.278 Sum_probs=295.3
Q ss_pred CccccceeeeeecCCCCeEEEEeeCC--------CCCCCeEEEEEeeeeccccccccccCCC-C--CCCCCcccccceeE
Q 016978 5 GQVITCKAAVAWEPNKPLVIEDVQVA--------PPQAGEVRIKILFTALCHTDAYTWSGKD-P--EGLFPCILGHEAAG 73 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p--------~~~~~~VlV~v~~~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G 73 (379)
+.+++|||+++.+++. ++++++|.| +|+++||||||.+++||++|++.+.+.. . ..++|.++|||++|
T Consensus 4 ~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G 82 (363)
T 3m6i_A 4 SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAG 82 (363)
T ss_dssp -CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEE
T ss_pred CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEE
Confidence 3568899999999887 999999999 9999999999999999999999887432 2 23679999999999
Q ss_pred EEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeE
Q 016978 74 IVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT 153 (379)
Q Consensus 74 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 153 (379)
+|+++|+++++|++||||++.+..+|+.|.+|+++.++.|.+... .|....+ |+|+||+
T Consensus 83 ~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~------------------G~~aey~ 141 (363)
T 3m6i_A 83 EVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVP------------------GLLRRYV 141 (363)
T ss_dssp EEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSC------------------CSCBSEE
T ss_pred EEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCC------------------ccceeEE
Confidence 999999999999999999999999999999999999999998764 2322233 4999999
Q ss_pred EecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 016978 154 VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (379)
Q Consensus 154 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~ 233 (379)
.+|++.++++|+ +++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++
T Consensus 142 ~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~ 218 (363)
T 3m6i_A 142 NHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK 218 (363)
T ss_dssp EEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred EEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 999999999999 9999999884 788999987 8889999999999999999999999999999966999999999999
Q ss_pred HHHhcCCceEeCCCC---CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcc
Q 016978 234 RAKNFGVTEFVNPKD---HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF 309 (379)
Q Consensus 234 ~~~~lg~~~v~~~~~---~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~ 309 (379)
+++++ +++++++.. ...++.+.+++.+++ ++|+||||+|++..++.++++++++ |+++.+|..... ..++..
T Consensus 219 ~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~--~~~~~~ 294 (363)
T 3m6i_A 219 FAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKNE--IQIPFM 294 (363)
T ss_dssp HHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCSC--CCCCHH
T ss_pred HHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCCC--ccccHH
Confidence 99999 766655431 136788999999987 9999999999987899999999996 999999985432 333333
Q ss_pred eeee-ccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcC-Cee-EEEEecCC
Q 016978 310 QLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGG-DCL-RCVLKMQD 379 (379)
Q Consensus 310 ~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~-~~~-Kvvi~~~~ 379 (379)
.++. ++++.++... .++++++++++++|++++.++++++|||+|+++||+.+.++ ... |+||+.+|
T Consensus 295 ~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 363 (363)
T 3m6i_A 295 RASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363 (363)
T ss_dssp HHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred HHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 3333 7788877543 57899999999999999889999999999999999999987 344 99999875
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-59 Score=439.00 Aligned_cols=336 Identities=27% Similarity=0.390 Sum_probs=289.6
Q ss_pred CCccccceeeeeecCCCCeEEEEeeCCC-CCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeC
Q 016978 4 EGQVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVG 79 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG 79 (379)
+..|++|||+++.+++++++++++|.|+ |+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|
T Consensus 10 ~~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG 89 (359)
T 1h2b_A 10 SLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVA 89 (359)
T ss_dssp -------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEEC
T ss_pred cCChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEEC
Confidence 3456789999999998779999999999 9999999999999999999999998765 34679999999999999999
Q ss_pred CCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 80 EGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 80 ~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
++|+++++||||+.++..+|+.|.+|+++++++|.+... +|.. .+ |+|+||+.+|++.
T Consensus 90 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~------------------G~~aey~~v~~~~ 147 (359)
T 1h2b_A 90 EGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-ID------------------GGFAEFMRTSHRS 147 (359)
T ss_dssp TTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BC------------------CSSBSEEEECGGG
T ss_pred CCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccC-CC------------------CcccceEEechHh
Confidence 999999999999999999999999999999999997653 3322 33 4999999999999
Q ss_pred eEecCCCCCccccc---cccccchhhhhhhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHH
Q 016978 160 VAKIDPQAPLDKVC---LLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDR 234 (379)
Q Consensus 160 ~~~iP~~~~~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~ 234 (379)
++++|+++++++|| .+++++.|||+++.+. +++++|++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++
T Consensus 148 ~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~ 226 (359)
T 1h2b_A 148 VIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKL 226 (359)
T ss_dssp EEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHH
T ss_pred EEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHH
Confidence 99999999999999 7888889999987655 8999999999999999999999999999 99 89999999999999
Q ss_pred HHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHH--HHHHHHHHhccCCceEEEEccCCCCcccccCccee
Q 016978 235 AKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVS--VMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL 311 (379)
Q Consensus 235 ~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~--~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~ 311 (379)
++++|+++++++++ . +.+.+++.+++ ++|+|||++|++. .+..++++ ++ |+++.+|..... .+++..+
T Consensus 227 ~~~lGa~~vi~~~~--~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~~---~~~~~~~ 297 (359)
T 1h2b_A 227 AERLGADHVVDARR--D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGEL---RFPTIRV 297 (359)
T ss_dssp HHHTTCSEEEETTS--C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSCC---CCCHHHH
T ss_pred HHHhCCCEEEeccc--h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCCC---CCCHHHH
Confidence 99999999999887 5 88888898888 9999999999976 78888887 75 999999986432 3444333
Q ss_pred e-eccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 312 V-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 312 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+ +++++.++... ...+++++++++.++++++ .+ ++|||+|+++|++.+.+++.. |+||++
T Consensus 298 ~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 359 (359)
T 1h2b_A 298 ISSEVSFEGSLVG---NYVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359 (359)
T ss_dssp HHTTCEEEECCSC---CHHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred HhCCcEEEEecCC---CHHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence 3 38888887643 2468999999999999875 46 999999999999999998865 999974
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-58 Score=435.87 Aligned_cols=341 Identities=24% Similarity=0.349 Sum_probs=293.6
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC-C--CCCCCcccccceeEEEEEeCCCCC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-P--EGLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
+++|||+++.+++. ++++++|.|+|+++||+|||.+++||++|++.+.|.. . ..++|.++|||++|+|+++|++|+
T Consensus 5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~ 83 (356)
T 1pl8_A 5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83 (356)
T ss_dssp CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence 46799999999876 9999999999999999999999999999999887432 1 125789999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
+|++||||++.+..+|+.|.+|++++++.|.+... +|....+ |+|+||+.+|++.++++
T Consensus 84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~i 142 (356)
T 1pl8_A 84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD------------------GNLCRFYKHNAAFCYKL 142 (356)
T ss_dssp SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEEC
T ss_pred CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC------------------CccccEEEeehHHEEEC
Confidence 99999999999999999999999999999998653 3321123 49999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
|+++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus 143 P~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v 220 (356)
T 1pl8_A 143 PDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV 220 (356)
T ss_dssp CTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence 999999999876 4788999987 78899999999999999999999999999999889999999999999999999999
Q ss_pred eCCCCC-CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeee
Q 016978 244 VNPKDH-DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 321 (379)
Q Consensus 244 ~~~~~~-~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~ 321 (379)
++++.. ..++.+.+++.+++++|+|||++|.+..+..++++++++ |+++.+|.... ...++...+. +++++.++.
T Consensus 221 i~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~g~~ 297 (356)
T 1pl8_A 221 LQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE--MTTVPLLHAAIREVDIKGVF 297 (356)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCS--CCCCCHHHHHHTTCEEEECC
T ss_pred EcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCCC--CCccCHHHHHhcceEEEEec
Confidence 988621 156777888877668999999999987899999999996 99999997432 2344433333 377887765
Q ss_pred cCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
.. ..++++++++++++++++.++++++|||+|+++|++.++++...|+||+++
T Consensus 298 ~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~ 350 (356)
T 1pl8_A 298 RY----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD 350 (356)
T ss_dssp SC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred cc----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence 43 467999999999999998888999999999999999999883349999985
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=434.86 Aligned_cols=339 Identities=25% Similarity=0.363 Sum_probs=284.6
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccC-CCC--CCCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDP--EGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
++|||+++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.| .++ ...+|.++|||++|+|+++|++|++
T Consensus 3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 82 (348)
T 2d8a_A 3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG 82 (348)
T ss_dssp CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence 4699999999984599999999999999999999999999999999988 432 2367899999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||||++.+..+|+.|.+|+++++++|.+... +|.. .+ |+|+||+.+|++.++++|
T Consensus 83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP 140 (348)
T 2d8a_A 83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVD-TD------------------GVFAEYAVVPAQNIWKNP 140 (348)
T ss_dssp CCTTCEEEECCEECCSCCC------------CEE---TTTS-SC------------------CSSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCC-CC------------------CcCcceEEeChHHeEECC
Confidence 9999999999999999999999999999997653 3322 33 499999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++++||+++ ++.|||+++ +.+++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++++
T Consensus 141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~ 217 (348)
T 2d8a_A 141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI 217 (348)
T ss_dssp TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE
T ss_pred CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence 999999999886 788999987 77889 999999999999999999999999987899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-cee-eeccEEEeee
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQL-VTGRVWKGTA 321 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~-~~~~~i~~~~ 321 (379)
++++ .++.+.+++.+++ ++|+|||++|....++.++++++++ |+++.+|.... ...+++ ..+ .+++++.++.
T Consensus 218 ~~~~--~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~~i~g~~ 292 (348)
T 2d8a_A 218 NPFE--EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG--KVTIDFNNLIIFKALTIYGIT 292 (348)
T ss_dssp CTTT--SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CCCCCHHHHTTTTTCEEEECC
T ss_pred CCCC--cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CcccCchHHHHhCCcEEEEec
Confidence 9876 6788899998887 9999999999988899999999996 99999998643 334444 333 3378888875
Q ss_pred cCCCcccccHHHHHHHHHcCCCCCCCceeeeee-cchHHHHHHHHhcCCeeEEEEecC
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMT-LGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~-~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
... ..++++++++++++|++++.++++++|| |+|+++|++.++++...|+||+++
T Consensus 293 ~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~ 348 (348)
T 2d8a_A 293 GRH--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK 348 (348)
T ss_dssp CCC--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred CCC--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence 432 1467899999999999988888999999 999999999998744459999874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-58 Score=429.96 Aligned_cols=337 Identities=26% Similarity=0.373 Sum_probs=293.8
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC--CCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
|||+++++++++++++++|.|+|+++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++|++++++++
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v 80 (345)
T 3jv7_A 1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV 80 (345)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence 899999999998999999999999999999999999999999999987643 468999999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCc--cccceecCCCccccccCCCcccccCCcceeeeeEEec-CcceEecC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGA--TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID 164 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~--~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~~iP 164 (379)
||||++.+..+|+.|.+|+++++++|...... ...|.. .+ |+|+||+.+| ++.++++|
T Consensus 81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~~~~p 141 (345)
T 3jv7_A 81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLG-SP------------------GSMAEYMIVDSARHLVPIG 141 (345)
T ss_dssp TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTT-BC------------------CSSBSEEEESCGGGEEECT
T ss_pred CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcC-CC------------------ceeeEEEEecchhceEeCC
Confidence 99999999999999999999999999432211 001111 23 4999999999 99999999
Q ss_pred CCCCccccccccccchhhhhhhhh-ccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+ +++++||.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++++
T Consensus 142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~ 220 (345)
T 3jv7_A 142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA 220 (345)
T ss_dssp T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 9 9999999999999999999866 4589999999999999999999999999954499999999999999999999999
Q ss_pred eCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeec
Q 016978 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAF 322 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 322 (379)
+++++ ++.+.+++.+++ ++|+||||+|++..++.++++++++ |+++.+|.... ...+++...+.+++++.++..
T Consensus 221 i~~~~---~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~ 295 (345)
T 3jv7_A 221 VKSGA---GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAG-AHAKVGFFMIPFGASVVTPYW 295 (345)
T ss_dssp EECST---THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTT-CCEEESTTTSCTTCEEECCCS
T ss_pred EcCCC---cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-CCCCcCHHHHhCCCEEEEEec
Confidence 98864 788889999988 9999999999987899999999996 99999998654 133444333344888888765
Q ss_pred CCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 323 GGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.. .++++++++++++|++++ +.++|+++|+++|++.+.+++.. |+||++
T Consensus 296 ~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p 345 (345)
T 3jv7_A 296 GT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP 345 (345)
T ss_dssp CC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred CC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence 43 468999999999999986 45899999999999999999876 999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=430.54 Aligned_cols=339 Identities=24% Similarity=0.392 Sum_probs=290.6
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccC-CCCC--CCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPE--GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g-~~~~--~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
++|||+++.+++. ++++++|.|+|+++||+|||.+++||++|++.+.+ ..+. .++|.++|||++|+|+++|++|++
T Consensus 3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 81 (352)
T 1e3j_A 3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH 81 (352)
T ss_dssp -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence 4699999999876 99999999999999999999999999999998874 3321 257999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||++.+..+|+.|.+|++++++.|.+... +|....+ |+|+||+.+|++.++++|
T Consensus 82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~------------------G~~aey~~v~~~~~~~iP 140 (352)
T 1e3j_A 82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD------------------GNLARYYVHAADFCHKLP 140 (352)
T ss_dssp CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC------------------ccceeEEEeChHHeEECc
Confidence 9999999999999999999999999999998653 2321123 499999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++
T Consensus 141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEE
Confidence 99999999876 4788999987 78899999999999999999999999999999 699999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcC---C-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEe
Q 016978 245 NPKDHDKPIQQVLVDLTD---G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKG 319 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~---~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~ 319 (379)
++++ ..++.+.+++.++ + ++|+|||++|....++.++++++++ |+++.+|.... ...++...+.. ++++.+
T Consensus 218 ~~~~-~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~i~g 293 (352)
T 1e3j_A 218 VVDP-AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ--MVTVPLVNACAREIDIKS 293 (352)
T ss_dssp ECCT-TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS--CCCCCHHHHHTTTCEEEE
T ss_pred cCcc-cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CccccHHHHHhcCcEEEE
Confidence 8763 1356667777665 4 8999999999987899999999996 99999997432 23343333333 777777
Q ss_pred eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-ee-EEEEecCC
Q 016978 320 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD-CL-RCVLKMQD 379 (379)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~-~~-Kvvi~~~~ 379 (379)
+... ..++++++++++++++++.++++++|||+|+++|++.+.+++ .. |+||++++
T Consensus 294 ~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 351 (352)
T 1e3j_A 294 VFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ 351 (352)
T ss_dssp CCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred eccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 6542 467999999999999998888999999999999999999887 44 99999864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-58 Score=431.75 Aligned_cols=337 Identities=25% Similarity=0.409 Sum_probs=295.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.+++++++++++|.|+|+++||+|||.+++||++|++.+.|..+ ...+|.++|||++|+|+++|+++++++
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2dq4_A 1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ 80 (343)
T ss_dssp CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence 79999999988899999999999999999999999999999999998655 346799999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+..+|+.|.+|+++++++|.+... +|.. .+ |+|+||+.+|++.++++|++
T Consensus 81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~------------------G~~aey~~v~~~~~~~iP~~ 138 (343)
T 2dq4_A 81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVD-RD------------------GGFAEYVVVPAENAWVNPKD 138 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTT-BC------------------CSSBSEEEEEGGGEEEECTT
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCC-CC------------------CcceeEEEEchHHeEECCCC
Confidence 99999999999999999999999999997653 2321 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||++. ++.|||+++.+.+++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++++
T Consensus 139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~ 215 (343)
T 2dq4_A 139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNP 215 (343)
T ss_dssp SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECT
T ss_pred CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCc
Confidence 9999999874 678999988658889 999999999999999999999999997899999999999999999 9999998
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-cee-eeccEEEeeecCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQL-VTGRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~ 324 (379)
++ .++.+.+++.+.+++|+|||++|....++.++++++++ |+++.+|.... ...++. ..+ .+++++.++...
T Consensus 216 ~~--~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~~i~g~~~~- 289 (343)
T 2dq4_A 216 LE--EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSD--PIRFDLAGELVMRGITAFGIAGR- 289 (343)
T ss_dssp TT--SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CEEECHHHHTGGGTCEEEECCSC-
T ss_pred Cc--cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CceeCcHHHHHhCceEEEEeecC-
Confidence 76 67888888888339999999999988899999999996 99999998543 334444 333 347888887543
Q ss_pred CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 325 FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
....++++++++++++++++.++++++|||+|+++|++.+.+++..|+||+++
T Consensus 290 -~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~ 342 (343)
T 2dq4_A 290 -RLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK 342 (343)
T ss_dssp -CTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred -CCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence 13468999999999999988888999999999999999998877679999885
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-57 Score=422.46 Aligned_cols=334 Identities=30% Similarity=0.475 Sum_probs=291.6
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG 80 (339)
T 1rjw_A 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (339)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence 799999999966999999999999999999999999999999999887653 3679999999999999999999999999
Q ss_pred CEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 89 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
|||++.+. .+|+.|.+|++++++.|.+... +|.. .+| +|+||+.+|++.++++|+++
T Consensus 81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~~P~~~ 138 (339)
T 1rjw_A 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNL 138 (339)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTS
T ss_pred CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecC-CCC------------------cceeeEEechHHEEECCCCC
Confidence 99998775 4599999999999999997653 2322 334 99999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++++++++
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~ 216 (339)
T 1rjw_A 139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL 216 (339)
T ss_dssp CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence 999999999999999998754 489999999999998899999999999999 999999999999999999999999887
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 326 (379)
+ .++.+.+++.+ +++|++||++|.+..+..++++++++ |+++.+|.... ...+++..++ +++++.++...
T Consensus 217 ~--~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~g~~~~--- 287 (339)
T 1rjw_A 217 K--EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE--EMPIPIFDTVLNGIKIIGSIVG--- 287 (339)
T ss_dssp T--SCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--EEEEEHHHHHHTTCEEEECCSC---
T ss_pred C--ccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC--CCccCHHHHHhCCcEEEEeccC---
Confidence 6 57888888877 68999999999988899999999996 99999998643 2344443333 37888876543
Q ss_pred ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 327 SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
..++++++++++.++++++. .++|||+|+++|++.+.+++.. |+||++++
T Consensus 288 ~~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 338 (339)
T 1rjw_A 288 TRKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED 338 (339)
T ss_dssp CHHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred CHHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 23679999999999999864 5789999999999999988765 99999865
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-57 Score=430.01 Aligned_cols=346 Identities=26% Similarity=0.412 Sum_probs=294.5
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCC----
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT---- 83 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~---- 83 (379)
-+|||+++.++++.++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++| +|+
T Consensus 16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~ 94 (380)
T 1vj0_A 16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN 94 (380)
T ss_dssp EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence 569999999999559999999999999999999999999999999999876645689999999999999999 999
Q ss_pred --CcCCCCEEeecCCcCCCCCcccc-CCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEe-cCcc
Q 016978 84 --EVQPGDHVIPCYQAECRECKFCK-SGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVV-HDVS 159 (379)
Q Consensus 84 --~~~~Gd~V~~~~~~~~~~~~~c~-~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v-~~~~ 159 (379)
+|++||||++.+..+|+.|.+|. ++++++|.+... +|....++ . .....|+|+||+.+ |++.
T Consensus 95 ~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~--------~---~~~~~G~~aey~~v~~~~~ 160 (380)
T 1vj0_A 95 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCS--------E---YPHLRGCYSSHIVLDPETD 160 (380)
T ss_dssp SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSS--------S---TTCCCSSSBSEEEECTTCC
T ss_pred CCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccC--------C---CCCCCccccceEEEcccce
Confidence 99999999999999999999999 999999997653 22100000 0 00112499999999 9999
Q ss_pred eEecCCCCCcc-ccccccccchhhhhhhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 160 VAKIDPQAPLD-KVCLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 160 ~~~iP~~~~~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
++++|++++++ +|++++ ++.|||+++ +.++ +++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++++++
T Consensus 161 ~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 238 (380)
T 1vj0_A 161 VLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 238 (380)
T ss_dssp EEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred EEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence 99999999999 676666 999999997 6678 9999999999999999999999999994499999999999999999
Q ss_pred cCCceEeCCC---CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce-ee
Q 016978 238 FGVTEFVNPK---DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LV 312 (379)
Q Consensus 238 lg~~~v~~~~---~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~-~~ 312 (379)
+|++++++++ + .++.+.+++.+++ ++|+|||++|.+..+..++++++++ |+++.+|.........+++.. ++
T Consensus 239 lGa~~vi~~~~~~~--~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~ 315 (380)
T 1vj0_A 239 IGADLTLNRRETSV--EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLV 315 (380)
T ss_dssp TTCSEEEETTTSCH--HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTT
T ss_pred cCCcEEEeccccCc--chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCCeeEchHHHHH
Confidence 9999999886 5 6788899999888 9999999999877899999999996 999999986411133444443 33
Q ss_pred -eccEEEeeecCCCcccccHHHHHHHHHc--CCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecC
Q 016978 313 -TGRVWKGTAFGGFKSRSQVPWLVDKYMK--KEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 313 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~ 378 (379)
+++++.+++.. ..++++++++++++ ++++ ++++++|||+|+++|++.+.+++..|+||+++
T Consensus 316 ~~~~~i~g~~~~---~~~~~~~~~~l~~~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~ 379 (380)
T 1vj0_A 316 LKNATFKGIWVS---DTSHFVKTVSITSRNYQLLS--KLITHRLPLKEANKALELMESREALKVILYPE 379 (380)
T ss_dssp TTTCEEEECCCC---CHHHHHHHHHHHHTCHHHHG--GGCCEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred hCCeEEEEeecC---CHHHHHHHHHHHHhhcCCee--eEEEEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence 48888887654 24689999999999 9884 66889999999999999998776449999875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-57 Score=427.10 Aligned_cols=338 Identities=26% Similarity=0.370 Sum_probs=285.4
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
++|||+++.+++++++++++|.|+|+++||+|||.+++||++|++.+.|..+..++|.++|||++|+|+++|++++++++
T Consensus 3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v 82 (348)
T 3two_A 3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI 82 (348)
T ss_dssp EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence 68999999999888999999999999999999999999999999999998877788999999999999999999999999
Q ss_pred CCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 88 Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
||||++.+. .+|+.|.+|+++++++|.... .|+. .+. .... .....|+|+||+.+|++.++++|++
T Consensus 83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~----~~~~-~~~---~~~~-----~~~~~G~~aey~~v~~~~~~~iP~~ 149 (348)
T 3two_A 83 GDVVGVGCFVNSCKACKPCKEHQEQFCTKVV----FTYD-CLD---SFHD-----NEPHMGGYSNNIVVDENYVISVDKN 149 (348)
T ss_dssp TCEEEECSEEECCSCSHHHHTTCGGGCTTCE----ESSS-SEE---GGGT-----TEECCCSSBSEEEEEGGGCEECCTT
T ss_pred CCEEEEeCCcCCCCCChhHhCCCcccCcccc----cccc-ccc---cccc-----CCcCCccccceEEechhhEEECCCC
Confidence 999988664 799999999999999998321 1111 000 0000 0112259999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++ .
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~ 226 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T 226 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S
T ss_pred CCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C
Confidence 99999999999999999987 45689999999999999999999999999999 999999999999999999999988 3
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccc-cCcceee--eccEEEeeecC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIS-TRPFQLV--TGRVWKGTAFG 323 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~-~~~~~~~--~~~~i~~~~~~ 323 (379)
+. ..+ ..++|+|||++|++..+..++++++++ |+++.+|.... .... ++...++ +++++.++..+
T Consensus 227 ~~--~~~--------~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~ 294 (348)
T 3two_A 227 DP--KQC--------KEELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPV-EVAPVLSVFDFIHLGNRKVYGSLIG 294 (348)
T ss_dssp SG--GGC--------CSCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCG-GGCCEEEHHHHHHTCSCEEEECCSC
T ss_pred CH--HHH--------hcCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCC-CCcccCCHHHHHhhCCeEEEEEecC
Confidence 22 111 118999999999976799999999996 99999998541 1222 3333333 48888888665
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
. ..++++++++++++++++. .++||++|+++|++.+.+++.. |+||++++
T Consensus 295 ~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~ 345 (348)
T 3two_A 295 G---IKETQEMVDFSIKHNIYPE---IDLILGKDIDTAYHNLTHGKAKFRYVIDMKK 345 (348)
T ss_dssp C---HHHHHHHHHHHHHTTCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred C---HHHHHHHHHHHHhCCCCce---EEEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 3 3679999999999999873 4799999999999999999876 99999863
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=428.84 Aligned_cols=338 Identities=22% Similarity=0.282 Sum_probs=287.1
Q ss_pred ccccceeeeeecCCCCeEEEE--eeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 016978 6 QVITCKAAVAWEPNKPLVIED--VQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~--~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
.|.+|||+++.+++.++++++ +|.|+|+++||+|||.+++||++|++.+.|.++..++|.++|||++|+|+++|++++
T Consensus 3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~ 82 (360)
T 1piw_A 3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN 82 (360)
T ss_dssp TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence 456899999999987799999 999999999999999999999999999998776567899999999999999999999
Q ss_pred -CcCCCCEEeecC-CcCCCCCccccCCCCCCCCCc-cCccc---cceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 84 -EVQPGDHVIPCY-QAECRECKFCKSGKTNLCGKV-RGATG---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 84 -~~~~Gd~V~~~~-~~~~~~~~~c~~~~~~~c~~~-~~~~~---~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
+|++||||++.+ ..+|+.|.+|++++++.|.+. ..... .|.. .+ |+|+||+.+|+
T Consensus 83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~-~~------------------G~~aey~~v~~ 143 (360)
T 1piw_A 83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYV-SQ------------------GGYANYVRVHE 143 (360)
T ss_dssp SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCB-CC------------------CSSBSEEEEEG
T ss_pred CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCcc-CC------------------CcceeEEEEch
Confidence 999999996654 478999999999999999875 11100 0211 23 49999999999
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+.++++|+++++++||++++++.|||+++.+ +++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++++++
T Consensus 144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK 221 (360)
T ss_dssp GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 9999999999999999999999999999755 889999999999999999999999999999 79999999999999999
Q ss_pred cCCceEeCCCCCCc-hHHHHHHHhcCCCccEEEEcCCC--HHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-ee
Q 016978 238 FGVTEFVNPKDHDK-PIQQVLVDLTDGGVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VT 313 (379)
Q Consensus 238 lg~~~v~~~~~~~~-~~~~~i~~~~~~g~d~vid~~g~--~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~ 313 (379)
+|+++++++++ . ++.+.+. +++|+|||++|. +..++.++++++++ |+++.+|.... . ..++...+ .+
T Consensus 222 lGa~~v~~~~~--~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~-~~~~~~~~~~~ 292 (360)
T 1piw_A 222 MGADHYIATLE--EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-H-EMLSLKPYGLK 292 (360)
T ss_dssp HTCSEEEEGGG--TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-S-CCEEECGGGCB
T ss_pred cCCCEEEcCcC--chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC-c-cccCHHHHHhC
Confidence 99999998865 4 5544443 489999999998 67788999999996 99999998643 1 12333333 33
Q ss_pred ccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecch--HHHHHHHHhcCCee-EEEEecCC
Q 016978 314 GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGE--INEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~--i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
++++.++... ...++++++++++++++++. + ++||++| +++|++.+.+++.. |+||++++
T Consensus 293 ~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~ 355 (360)
T 1piw_A 293 AVSISYSALG---SIKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGYD 355 (360)
T ss_dssp SCEEEECCCC---CHHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred CeEEEEEecC---CHHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecCc
Confidence 7888877543 24679999999999998754 6 8999999 99999999988865 99998753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-56 Score=420.20 Aligned_cols=335 Identities=24% Similarity=0.366 Sum_probs=293.3
Q ss_pred ceeeeeecC-CCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEP-NKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~-~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++... +.+++++|+|.|+|+||||||||.|+|||++|+++++|.++. ++|.++|||++|+|+++|++|+++++|
T Consensus 1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G 79 (348)
T 4eez_A 1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG 79 (348)
T ss_dssp CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence 899988653 345999999999999999999999999999999999997754 579999999999999999999999999
Q ss_pred CEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 89 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
|||++.+. ..|+.|.+|..+..+.|...... |.. .+| +|+||+.+|++.++++|+++
T Consensus 80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~G------------------~~ae~~~~~~~~~~~iP~~~ 137 (348)
T 4eez_A 80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKNA---GYS-VDG------------------GMAEEAIVVADYAVKVPDGL 137 (348)
T ss_dssp CEEEEESEEECCSSSHHHHTTCGGGCTTCEEB---TTT-BCC------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred CeEeecccccccCccccccCCccccccccccc---ccc-cCC------------------cceeeccccccceeecCCCC
Confidence 99988775 56789999999999999977642 222 344 99999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++|+++++++.|||+++ +.+++++|++|||+|+|++|.+++|+|+.++..+|++++++++|+++++++|++++++++
T Consensus 138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG 216 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-
T ss_pred CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC
Confidence 9999999999999999975 677899999999999999999999999988655999999999999999999999999998
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~ 325 (379)
+ .++.+.+++.+++ ++|.+++++++..++..++.+++++ |+++.+|..... ..++...++ +++++.++..+.
T Consensus 217 ~--~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~gs~~~~- 290 (348)
T 4eez_A 217 D--VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPNTE--MTLSVPTVVFDGVEVAGSLVGT- 290 (348)
T ss_dssp C--CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCSCE--EEECHHHHHHSCCEEEECCSCC-
T ss_pred C--CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccCCC--CccCHHHHHhCCeEEEEEecCC-
Confidence 8 7899999999999 9999999999999999999999996 999999986543 333333333 388888876653
Q ss_pred cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 326 KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
+.+++++++++++|++++ +.++|||+|+++|++.+++++.. |+||+|++
T Consensus 291 --~~~~~~~~~l~~~g~i~p---~~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk 340 (348)
T 4eez_A 291 --RLDLAEAFQFGAEGKVKP---IVATRKLEEINDIIDEMKAGKIEGRMVIDFTK 340 (348)
T ss_dssp --HHHHHHHHHHHHTTSCCC---CEEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred --HHHHHHHHHHHHcCCCEE---EEEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence 468999999999999874 35889999999999999999986 99999863
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-56 Score=419.12 Aligned_cols=335 Identities=25% Similarity=0.381 Sum_probs=294.2
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.+++.| ++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++++
T Consensus 1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2eih_A 1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA 80 (343)
T ss_dssp CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence 799999999976 899999999999999999999999999999999987654 36799999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+..+|+.|.+|+++++++|.+... +|.. .+| +|+||+.+|++.++++|++
T Consensus 81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~~~P~~ 138 (343)
T 2eih_A 81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEH-RHG------------------TYAEYVVLPEANLAPKPKN 138 (343)
T ss_dssp TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTS-SCC------------------SSBSEEEEEGGGEEECCTT
T ss_pred CCCEEEECCCCCcccchhhccCcccccccccc---cCcC-CCc------------------cceeEEEeChHHeEECCCC
Confidence 99999999999999999999999999998653 3322 234 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++++++
T Consensus 139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d 217 (343)
T 2eih_A 139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVN 217 (343)
T ss_dssp SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEc
Confidence 9999999999999999999877679999999999998 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 323 (379)
+++ .++.+.+++.+++ ++|++||++|. ..+..++++++++ |+++.+|..... ...+++..+ .+++++.++...
T Consensus 218 ~~~--~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 292 (343)
T 2eih_A 218 YTH--PDWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGY-EGTLPFAHVFYRQLSILGSTMA 292 (343)
T ss_dssp TTS--TTHHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSC-CCCCCTTHHHHTTCEEEECCSC
T ss_pred CCc--ccHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCC-cCccCHHHHHhCCcEEEEecCc
Confidence 876 5788888888876 89999999994 7799999999996 999999986432 223343333 337888876532
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..++++++++++++++++ ++++++|+|+|+++|++.+++++.. |+||++
T Consensus 293 ---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 342 (343)
T 2eih_A 293 ---SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342 (343)
T ss_dssp ---CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred ---cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence 356899999999999987 4688999999999999999988765 999986
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=418.08 Aligned_cols=341 Identities=27% Similarity=0.421 Sum_probs=294.2
Q ss_pred ccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 016978 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
.|.+|||+++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus 2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 81 (347)
T 2hcy_A 2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG 81 (347)
T ss_dssp CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence 4568999999999966999999999999999999999999999999999987653 367999999999999999999999
Q ss_pred cCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 85 ~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
|++||||++.+. .+|+.|.+|+++++++|.+... +|.. .+| +|+||+.+|++.++++
T Consensus 82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~i 139 (347)
T 2hcy_A 82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYT-HDG------------------SFQQYATADAVQAAHI 139 (347)
T ss_dssp CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEETTTSEEE
T ss_pred CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccC-CCC------------------cceeEEEeccccEEEC
Confidence 999999998765 4599999999999999997653 2322 334 9999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
|+++++++||++++++.|||+++. ..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|+++
T Consensus 140 P~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~ 217 (347)
T 2hcy_A 140 PQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEV 217 (347)
T ss_dssp CTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCce
Confidence 999999999999999999999874 458999999999998 9999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~ 321 (379)
++++.+ ..++.+.+++.+.+++|++||++|....++.++++++++ |+++.+|.... ...++++..++ +++++.++.
T Consensus 218 ~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~ 294 (347)
T 2hcy_A 218 FIDFTK-EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAG-AKCCSDVFNQVVKSISIVGSY 294 (347)
T ss_dssp EEETTT-CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTT-CEEEEEHHHHHHTTCEEEECC
T ss_pred EEecCc-cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCC-CCCCCCHHHHhhCCcEEEEcc
Confidence 888763 256778888877668999999999988899999999996 99999998642 23444444433 378888775
Q ss_pred cCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
.. ...++++++++++++++++. .++|||+|+++|++.+.+++.. |+||++++
T Consensus 295 ~~---~~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 347 (347)
T 2hcy_A 295 VG---NRADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK 347 (347)
T ss_dssp CC---CHHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred CC---CHHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence 44 23679999999999999863 4789999999999999988765 99999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-56 Score=419.23 Aligned_cols=336 Identities=22% Similarity=0.245 Sum_probs=288.5
Q ss_pred CccccceeeeeecCC-CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCC
Q 016978 5 GQVITCKAAVAWEPN-KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~-~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v 82 (379)
.+|.+|||+++.+++ +.++++++|.|+|+++||+|||.+++||++|++++.|.++. .++|.++|||++|+|+++|+++
T Consensus 23 ~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v 102 (363)
T 3uog_A 23 MMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSV 102 (363)
T ss_dssp CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTC
T ss_pred cCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCC
Confidence 445679999999774 34999999999999999999999999999999999987763 4789999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccc-cceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG-AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
++|++||||++.+.. +|..+. +.|.+...... +|.. .+ |+|+||+.+|++.++
T Consensus 103 ~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~-~~------------------G~~aey~~v~~~~~~ 156 (363)
T 3uog_A 103 TRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGA-HP------------------GVLSEYVVLPEGWFV 156 (363)
T ss_dssp CSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTT-SC------------------CCCBSEEEEEGGGEE
T ss_pred CCCCCCCEEEEeccc------cccccc-cccccccccccccCcC-CC------------------CcceeEEEechHHeE
Confidence 999999999987653 567777 88874321111 2222 33 499999999999999
Q ss_pred ecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus 157 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~ 235 (363)
T 3uog_A 157 AAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGAD 235 (363)
T ss_dssp ECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCS
T ss_pred ECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCC
Confidence 9999999999999999999999998889999999999999999999999999999999 999999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEe
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKG 319 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~ 319 (379)
++++.++ .++.+.+++.+++ ++|+||||+|. ..+..++++++++ |+++.+|.... ....++...++ +++++.+
T Consensus 236 ~vi~~~~--~~~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g 310 (363)
T 3uog_A 236 HGINRLE--EDWVERVYALTGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGVLEG-FEVSGPVGPLLLKSPVVQG 310 (363)
T ss_dssp EEEETTT--SCHHHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHEEEE-EEEEEECCCSS-CEECCBTTHHHHTCCEEEE
T ss_pred EEEcCCc--ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhhcC-CEEEEEecCCC-cccCcCHHHHHhCCcEEEE
Confidence 9998544 6889999999988 99999999996 6699999999996 99999998653 23444444433 3888888
Q ss_pred eecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 320 TAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
+... ...+++++++++++++++ ++++++|+|+|+++|++.+.+++..|+||+|
T Consensus 311 ~~~~---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~ 363 (363)
T 3uog_A 311 ISVG---HRRALEDLVGAVDRLGLK--PVIDMRYKFTEVPEALAHLDRGPFGKVVIEF 363 (363)
T ss_dssp CCCC---CHHHHHHHHHHHHHHTCC--CCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred EecC---CHHHHHHHHHHHHcCCCc--cceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence 7654 346899999999999876 5689999999999999999998833999986
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-56 Score=419.36 Aligned_cols=331 Identities=27% Similarity=0.418 Sum_probs=266.4
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC--CCCCCcccccceeEEEEEeCCCCCCc
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
.+|||+++.+++++++++++|.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++ +++
T Consensus 2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~ 80 (344)
T 2h6e_A 2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV 80 (344)
T ss_dssp EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence 3699999999986799999999999999999999999999999999998765 3468999999999999999999 999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEec-CcceEecC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKID 164 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~~iP 164 (379)
++||||+..+..+|+.|.+|+++.+++|.+... +|.. .+| +|+||+.+| ++.++++
T Consensus 81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~~~i- 137 (344)
T 2h6e_A 81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQT-TNG------------------GFSEYMLVKSSRWLVKL- 137 (344)
T ss_dssp CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEESCGGGEEEE-
T ss_pred CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccc-cCC------------------cceeeEEecCcccEEEe-
Confidence 999999988889999999999999999997643 3322 334 999999999 9999999
Q ss_pred CCCCccccccccccchhhhhhhhhc----cCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhc
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNT----AKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~VlI~Gag~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~l 238 (379)
+++++++||.+++++.|||+++... +++ +|++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++++++
T Consensus 138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l 215 (344)
T 2h6e_A 138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL 215 (344)
T ss_dssp SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh
Confidence 9999999999999999999997654 278 999999999999999999999999 99 899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRV 316 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~ 316 (379)
|+++++++++ . .+.+.+++++ ++|+|||++|.+..++.++++++++ |+++.+|.... ...++...++ ++++
T Consensus 216 Ga~~vi~~~~--~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~ 288 (344)
T 2h6e_A 216 GADYVSEMKD--A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGK--RVSLEAFDTAVWNKK 288 (344)
T ss_dssp TCSEEECHHH--H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--CCCCCHHHHHHTTCE
T ss_pred CCCEEecccc--c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCCC--CcccCHHHHhhCCcE
Confidence 9999987642 0 2234555656 8999999999977899999999996 99999998643 2344444433 3788
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.++... ..++++++++++.++++++. + ++|||+|+++|++.+++++.. |+||++
T Consensus 289 i~g~~~~---~~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 344 (344)
T 2h6e_A 289 LLGSNYG---SLNDLEDVVRLSESGKIKPY--I-IKVPLDDINKAFTNLDEGRVDGRQVITP 344 (344)
T ss_dssp EEECCSC---CHHHHHHHHHHHHTTSSCCC--E-EEECC----------------CEEEECC
T ss_pred EEEEecC---CHHHHHHHHHHHHcCCCCcc--e-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence 8887644 24689999999999998754 7 999999999999999988865 999864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=414.83 Aligned_cols=333 Identities=26% Similarity=0.371 Sum_probs=291.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC--------CCCCCcccccceeEEEEEeCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
|||+++.+++.+++++++|.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++
T Consensus 1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~ 80 (347)
T 1jvb_A 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (347)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence 79999999987799999999999999999999999999999999988655 3467999999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC-cce
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD-VSV 160 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~~ 160 (379)
+++|++||||+..+..+|+.|.+|+++++++|.+... +|.. .+| +|+||+.+|+ +.+
T Consensus 81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~-~~G------------------~~aey~~v~~~~~~ 138 (347)
T 1jvb_A 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM 138 (347)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---cccc-CCC------------------cceeEEEecCccce
Confidence 9999999999988889999999999999999997653 3322 334 9999999999 999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhc
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~l 238 (379)
+++ +++++++||.+++++.|||+++ +++++++|++|||+|+ |++|++++|+|+.+ |+ +|+++++++++++.++++
T Consensus 139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~ 215 (347)
T 1jvb_A 139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA 215 (347)
T ss_dssp EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence 999 9999999999999999999987 4588999999999998 59999999999999 99 899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcC-CCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccE
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRV 316 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~ 316 (379)
|+++++++.+ .++.+.+.+.+. +++|++||++|.+..+..++++++++ |+++.+|..... . .+++..++ ++++
T Consensus 216 g~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~-~~~~~~~~~~~~~ 290 (347)
T 1jvb_A 216 GADYVINASM--QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGAD-L-HYHAPLITLSEIQ 290 (347)
T ss_dssp TCSEEEETTT--SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCC-C-CCCHHHHHHHTCE
T ss_pred CCCEEecCCC--ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCC-C-CCCHHHHHhCceE
Confidence 9999998876 677777888876 58999999999977899999999996 999999986412 2 44444433 3788
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.++... ..++++++++++++++++ ++++++|||+|+++|++.+++++.. |+||++
T Consensus 291 i~g~~~~---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 347 (347)
T 1jvb_A 291 FVGSLVG---NQSDFLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347 (347)
T ss_dssp EEECCSC---CHHHHHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred EEEEecc---CHHHHHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence 8887644 246799999999999986 4588999999999999999988875 999974
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=426.87 Aligned_cols=344 Identities=19% Similarity=0.277 Sum_probs=290.2
Q ss_pred cceeeeeecCCCCeEEEEeeCCCC-CC-----CeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPP-QA-----GEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~-~~-----~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+|||+++.+++. ++++++|.|+| ++ +||+|||.+++||++|++.+.|..+ .++|.++|||++|+|+++|++|
T Consensus 2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v 79 (398)
T 2dph_A 2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV 79 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence 599999999876 99999999987 68 9999999999999999999998643 3579999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCc-----cccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGA-----TGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
++|++||||++.+..+|+.|.+|+++++++|.+.... ..+|.. . ....|+|+||+++|+
T Consensus 80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~--------------~--~~~~G~~aey~~v~~ 143 (398)
T 2dph_A 80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFD--------------L--KGWSGGQAEYVLVPY 143 (398)
T ss_dssp CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTT--------------B--SSCCCSSBSEEEESS
T ss_pred CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccc--------------c--CCCCceeeeeEEecc
Confidence 9999999999999999999999999999999872110 012210 0 001259999999998
Q ss_pred c--ceEecCCCCCccc----cccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 158 V--SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 158 ~--~~~~iP~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
+ .++++|+++++++ ||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|
T Consensus 144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~ 222 (398)
T 2dph_A 144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER 222 (398)
T ss_dssp HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence 7 8999999999998 888999999999997 78899999999999999999999999999999789999999999
Q ss_pred HHHHHhcCCceEeCCCCCCchH-HHHHHHhcCC-CccEEEEcCCCH--------------HHHHHHHHHhccCCceEEEE
Q 016978 232 FDRAKNFGVTEFVNPKDHDKPI-QQVLVDLTDG-GVDYSFECIGNV--------------SVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 232 ~~~~~~lg~~~v~~~~~~~~~~-~~~i~~~~~~-g~d~vid~~g~~--------------~~~~~~~~~l~~~~G~iv~~ 295 (379)
+++++++|++ ++++++ .++ .+.+++.+++ ++|+|||++|.. ..+..++++++++ |+++.+
T Consensus 223 ~~~a~~lGa~-~i~~~~--~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~ 298 (398)
T 2dph_A 223 LKLLSDAGFE-TIDLRN--SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIP 298 (398)
T ss_dssp HHHHHTTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECC
T ss_pred HHHHHHcCCc-EEcCCC--cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEe
Confidence 9999999995 888866 554 7888888888 999999999975 2689999999996 999999
Q ss_pred ccCCC-----------CcccccCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCCCC--CCCceeeeeecchHHHH
Q 016978 296 GVAAS-----------GQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK--VDEYVTHNMTLGEINEA 361 (379)
Q Consensus 296 g~~~~-----------~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~i~~~~~~~~i~~A 361 (379)
|.... .....++...++ +++++.++... ...+++++++++++|+++ +.++++++|+|+|+++|
T Consensus 299 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A 375 (398)
T 2dph_A 299 GIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDG 375 (398)
T ss_dssp SCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHH
T ss_pred ccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHH
Confidence 97521 112233332322 36777765432 346789999999999999 77778999999999999
Q ss_pred HHHHhcCCeeEEEEecC
Q 016978 362 FRYMHGGDCLRCVLKMQ 378 (379)
Q Consensus 362 ~~~~~~~~~~Kvvi~~~ 378 (379)
++.+.+++..|+||+++
T Consensus 376 ~~~~~~~~~gKvvv~~~ 392 (398)
T 2dph_A 376 YAKFDKGSPAKFVIDPH 392 (398)
T ss_dssp HHHHHTTCSCEEEECTT
T ss_pred HHHHhcCCceEEEEecC
Confidence 99998877689999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-56 Score=419.08 Aligned_cols=343 Identities=26% Similarity=0.413 Sum_probs=282.6
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
.++||++.+.+++++++++++|.|+|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|++|++|+
T Consensus 20 ~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~ 99 (369)
T 1uuf_A 20 GLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYA 99 (369)
T ss_dssp ---CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred CceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCCC
Confidence 37899999988877799999999999999999999999999999999998766556899999999999999999999999
Q ss_pred CCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 87 PGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 87 ~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
+||||++.+. .+|+.|.+|+++++++|.+.... ..+.....| ....|+|+||+.+|++.++++|+
T Consensus 100 vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~g-------------~~~~G~~aeyv~v~~~~~~~~P~ 165 (369)
T 1uuf_A 100 PGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRH 165 (369)
T ss_dssp TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCS
T ss_pred CCCEEEEccCCCCCCCCcccCCCCcccCcchhcc-cccccccCC-------------CCCCCcccceEEEcchhEEECCC
Confidence 9999998876 56999999999999999975310 000000000 01225999999999999999999
Q ss_pred C-CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 166 Q-APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 166 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
+ +++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++
T Consensus 166 ~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi 243 (369)
T 1uuf_A 166 PQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVV 243 (369)
T ss_dssp CGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEe
Confidence 9 9999999999999999998755 689999999999999999999999999999 799999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
++.+ .++.+ +.. +++|+|||++|.+..++.++++++++ |+++.+|...... ..+++..++ +++++.++..+
T Consensus 244 ~~~~--~~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~-~~~~~~~~~~~~~~i~g~~~~ 315 (369)
T 1uuf_A 244 NSRN--ADEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPH-KSPEVFNLIMKRRAIAGSMIG 315 (369)
T ss_dssp ETTC--HHHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSC
T ss_pred cccc--HHHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCc-cccCHHHHHhCCcEEEEeecC
Confidence 8876 44433 333 48999999999876789999999996 9999999864321 133333333 37888887654
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
. .+++++++++++++++++. + ++|||+|+++|++.+.+++.. |+||++++
T Consensus 316 ~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 366 (369)
T 1uuf_A 316 G---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNRT 366 (369)
T ss_dssp C---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred C---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 2 3678999999999998854 4 579999999999999988865 99998863
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-56 Score=427.10 Aligned_cols=339 Identities=21% Similarity=0.309 Sum_probs=288.3
Q ss_pred ccccceeeeeecCCCCeEEEEeeCCC-CCCCeEEEEEeeeeccccccccccCCCC-------CCCCCcccccceeEEEEE
Q 016978 6 QVITCKAAVAWEPNKPLVIEDVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDP-------EGLFPCILGHEAAGIVES 77 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~~VlV~v~~~~i~~~D~~~~~g~~~-------~~~~p~~~G~e~~G~V~~ 77 (379)
.+.+|++.++..++. ++++++|.|+ |+++||+|||.+++||++|++.+.|... ..++|.++|||++|+|++
T Consensus 27 ~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~ 105 (404)
T 3ip1_A 27 GKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE 105 (404)
T ss_dssp TTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEE
T ss_pred hhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEE
Confidence 344566666666554 8899999999 9999999999999999999999876421 236799999999999999
Q ss_pred eCCCC------CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeee
Q 016978 78 VGEGV------TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ 151 (379)
Q Consensus 78 vG~~v------~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 151 (379)
+|++| ++|++||||++.+..+|+.|.+|++++++.|.+... +|.. .+| +|+|
T Consensus 106 vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~-~~G------------------~~ae 163 (404)
T 3ip1_A 106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFN-VDG------------------AFAE 163 (404)
T ss_dssp ECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBS
T ss_pred ECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCC-CCC------------------CCcc
Confidence 99999 899999999999999999999999999999998763 3332 334 9999
Q ss_pred eEEecCcceEecCCCCCc------cccccccccchhhhhhhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEE
Q 016978 152 YTVVHDVSVAKIDPQAPL------DKVCLLGCGVPTGLGAVWNT-AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224 (379)
Q Consensus 152 ~~~v~~~~~~~iP~~~~~------~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~ 224 (379)
|+.+|++.++++|+++++ .++|+++.+++|||+++... +++++|++|||+|+|++|++++|+|+.+|+.+|++
T Consensus 164 y~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~ 243 (404)
T 3ip1_A 164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL 243 (404)
T ss_dssp EEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred eEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999998864 45888888999999998655 48999999999999999999999999999988999
Q ss_pred EcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCH-HHHHHHHHHh----ccCCceEEEEccC
Q 016978 225 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV-SVMRAALECC----HKGWGTSVIVGVA 298 (379)
Q Consensus 225 v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~-~~~~~~~~~l----~~~~G~iv~~g~~ 298 (379)
++++++|+++++++|+++++++++ .++.+.+++.+++ ++|+||||+|++ ..+..+++++ +++ |+++.+|..
T Consensus 244 ~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~ 320 (404)
T 3ip1_A 244 SEPSEVRRNLAKELGADHVIDPTK--ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARA 320 (404)
T ss_dssp ECSCHHHHHHHHHHTCSEEECTTT--SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCC
T ss_pred ECCCHHHHHHHHHcCCCEEEcCCC--CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCC
Confidence 999999999999999999999987 7899999999988 999999999996 3677787888 996 999999986
Q ss_pred CCCcccccCcceeee-ccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEec
Q 016978 299 ASGQEISTRPFQLVT-GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKM 377 (379)
Q Consensus 299 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~ 377 (379)
... .+++...++. ++++.++.... ...+++++++++++| +++.++++++|+|+|+++|++.+..+ |+||++
T Consensus 321 ~~~--~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G---Kvvl~~ 392 (404)
T 3ip1_A 321 DAK--IPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD---KSLVKV 392 (404)
T ss_dssp CSC--EEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC---TTCSCE
T ss_pred CCC--CcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC---cEEEec
Confidence 543 3444444433 78888776432 246899999999999 99888899999999999999998843 666665
Q ss_pred C
Q 016978 378 Q 378 (379)
Q Consensus 378 ~ 378 (379)
+
T Consensus 393 ~ 393 (404)
T 3ip1_A 393 T 393 (404)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-55 Score=414.47 Aligned_cols=348 Identities=22% Similarity=0.306 Sum_probs=286.1
Q ss_pred CCCCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCC
Q 016978 1 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 80 (379)
|.-+..+++|+++++.++.+++++.++|.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+
T Consensus 1 ~~~m~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~ 80 (357)
T 2cf5_A 1 MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGS 80 (357)
T ss_dssp -----CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECS
T ss_pred CccccCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECC
Confidence 44556678899999988766799999999999999999999999999999999988766557899999999999999999
Q ss_pred CCCCcCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 81 GVTEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
++++|++||||++.+. .+|+.|.+|++++++.|.+.... ..+.. ..| ....|+|+||+++|++.
T Consensus 81 ~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~-~~g-------------~~~~G~~aey~~v~~~~ 145 (357)
T 2cf5_A 81 DVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVY-ING-------------QPTQGGFAKATVVHQKF 145 (357)
T ss_dssp SCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBC-TTS-------------CBCCCSSBSCEEEEGGG
T ss_pred CCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccc-cCC-------------CCCCCccccEEEechhh
Confidence 9999999999987654 68999999999999999754321 00000 000 11235999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N 237 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~ 237 (379)
++++|+++++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ +
T Consensus 146 ~~~~P~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~ 223 (357)
T 2cf5_A 146 VVKIPEGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQD 223 (357)
T ss_dssp EEECCSSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTT
T ss_pred EEECcCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Confidence 9999999999999999999999999864 56788 99999999999999999999999999 8999999999999888 9
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEE
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVW 317 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i 317 (379)
+|+++++++++ . +.+++.+ +++|+|||++|.+..++.++++++++ |+++.+|....... .+++..+.+++++
T Consensus 224 lGa~~vi~~~~--~---~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~-~~~~~~~~~~~~i 295 (357)
T 2cf5_A 224 LGADDYVIGSD--Q---AKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPLQ-FLTPLLMLGRKVI 295 (357)
T ss_dssp SCCSCEEETTC--H---HHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSCCC-CCHHHHHHHTCEE
T ss_pred cCCceeecccc--H---HHHHHhc-CCCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCCcc-ccCHHHHhCccEE
Confidence 99999998865 3 3455554 37999999999866789999999996 99999997543211 1333322338888
Q ss_pred EeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 318 KGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
.++... ...++++++++++++++++. + ++||++|+++|++.+++++.. |+||++++
T Consensus 296 ~g~~~~---~~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 352 (357)
T 2cf5_A 296 TGSFIG---SMKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG 352 (357)
T ss_dssp EECCSC---CHHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred EEEccC---CHHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence 887654 23678999999999999864 4 799999999999999988876 99998753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=422.94 Aligned_cols=333 Identities=17% Similarity=0.230 Sum_probs=284.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCC---CcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF---PCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~---p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|.++..++ |.++|||++| |+++|++ ++|+
T Consensus 1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~ 78 (357)
T 2b5w_A 1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE 78 (357)
T ss_dssp CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence 799999999888999999999999999999999999999999999987654556 8999999999 9999999 9999
Q ss_pred CCCEEeecCCcC--CCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 87 PGDHVIPCYQAE--CRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 87 ~Gd~V~~~~~~~--~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+||||++.+..+ |+.|.+|+++++++|.+..... .|....+| +|+||+.+|++.++++|
T Consensus 79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~G------------------~~aey~~v~~~~~~~iP 139 (357)
T 2b5w_A 79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAHG------------------YMSEFFTSPEKYLVRIP 139 (357)
T ss_dssp TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEECC------------------SCBSEEEEEGGGEEECC
T ss_pred CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCCc------------------ceeeEEEEchHHeEECC
Confidence 999999998878 9999999999999999865310 02201234 99999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCC------CEEEEEcCChHHHHH-HHHH-HHcCCCeEEEEcCChh---HHH
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG------SIVAVFGLGTVGLAV-AEGA-KAAGASRVIGIDIDPK---KFD 233 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~VlI~Gag~vG~~a-~~la-~~~g~~~vi~v~~~~~---~~~ 233 (379)
++++ ++ |+++.+++|||+++ +.+++++| ++|||+|+|++|+++ +|+| +.+|+++|++++++++ |++
T Consensus 140 ~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~ 216 (357)
T 2b5w_A 140 RSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTID 216 (357)
T ss_dssp GGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHH
T ss_pred CCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHH
Confidence 9999 55 45667999999997 77889999 999999999999999 9999 9999955999999999 999
Q ss_pred HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee--
Q 016978 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-- 311 (379)
Q Consensus 234 ~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-- 311 (379)
+++++|++++ ++++ .++.+ +++. .+++|+|||++|.+..+..++++++++ |+++.+|.... ....+++..+
T Consensus 217 ~~~~lGa~~v-~~~~--~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~ 289 (357)
T 2b5w_A 217 IIEELDATYV-DSRQ--TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSD-WAFEVDAGAFHR 289 (357)
T ss_dssp HHHHTTCEEE-ETTT--SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCC-CCCCCCHHHHHH
T ss_pred HHHHcCCccc-CCCc--cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCC-CCceecHHHHhH
Confidence 9999999999 8776 56666 7777 558999999999977899999999996 99999998652 2344554444
Q ss_pred ---eeccEEEeeecCCCcccccHHHHHHHHHcC--CCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecCC
Q 016978 312 ---VTGRVWKGTAFGGFKSRSQVPWLVDKYMKK--EIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 379 (379)
Q Consensus 312 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~~ 379 (379)
.+++++.++.... .+++++++++++++ ++ +.++++++|+|+|+++|++.+ +...|+||++++
T Consensus 290 ~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~~~ 356 (357)
T 2b5w_A 290 EMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEFST 356 (357)
T ss_dssp HHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred HHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEecC
Confidence 3488888876542 46899999999999 86 557789999999999999988 444599999875
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=421.05 Aligned_cols=346 Identities=23% Similarity=0.309 Sum_probs=286.3
Q ss_pred cceeeeeecCCCCeEEEEeeCCCCC-CCe------EEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 9 TCKAAVAWEPNKPLVIEDVQVAPPQ-AGE------VRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 9 ~~~a~~~~~~~~~~~~~~~~~p~~~-~~~------VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
+|||+++.+++. ++++++|.|+|. ++| |||||.+++||++|++++.|.++ .++|.++|||++|+|+++|++
T Consensus 2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~ 79 (398)
T 1kol_A 2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD 79 (398)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence 599999999886 999999999996 888 99999999999999999988653 357899999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCcc---ccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGAT---GAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~---~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
|++|++||||++.+..+|+.|.+|+++++++|.+..... .+|.... ....|+|+||+++|++
T Consensus 80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~~ 144 (398)
T 1kol_A 80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPYA 144 (398)
T ss_dssp CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESSH
T ss_pred CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecch
Confidence 999999999999988999999999999999999764210 0111000 0012599999999987
Q ss_pred --ceEecCCCCCccc----cccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 016978 159 --SVAKIDPQAPLDK----VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (379)
Q Consensus 159 --~~~~iP~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~ 232 (379)
.++++|+++++++ +|++++++.|||+++. .+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus 145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~ 223 (398)
T 1kol_A 145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL 223 (398)
T ss_dssp HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred hCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence 8999999999888 7888889999999974 78999999999999999999999999999997899999999999
Q ss_pred HHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCH---------------HHHHHHHHHhccCCceEEEEc
Q 016978 233 DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNV---------------SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 233 ~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~---------------~~~~~~~~~l~~~~G~iv~~g 296 (379)
++++++|++ ++++++ ..++.+.+++.+++ ++|+|||++|.. ..+..++++++++ |+++.+|
T Consensus 224 ~~a~~lGa~-~i~~~~-~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G 300 (398)
T 1kol_A 224 AHAKAQGFE-IADLSL-DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPG 300 (398)
T ss_dssp HHHHHTTCE-EEETTS-SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECS
T ss_pred HHHHHcCCc-EEccCC-cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEec
Confidence 999999997 777765 13478889998887 999999999985 3789999999996 9999999
Q ss_pred cCCCCc-----------ccccCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCCCC-CCCceeeeeecchHHHHHH
Q 016978 297 VAASGQ-----------EISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK-VDEYVTHNMTLGEINEAFR 363 (379)
Q Consensus 297 ~~~~~~-----------~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~i~~~~~~~~i~~A~~ 363 (379)
...... .+.++...++ +++++.+... ....+++++++++.+|+++ +.++++++|+|+|+++|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~ 377 (398)
T 1kol_A 301 LYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYG 377 (398)
T ss_dssp CCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC---CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHH
T ss_pred cccCCcccccccccccccccccHHHHhhcccEEEeccc---ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHH
Confidence 752111 1223322222 2666665432 2235678899999999998 4456789999999999999
Q ss_pred HHhcCCeeEEEEecC
Q 016978 364 YMHGGDCLRCVLKMQ 378 (379)
Q Consensus 364 ~~~~~~~~Kvvi~~~ 378 (379)
.+.+++..|+||+++
T Consensus 378 ~~~~~~~gKvvi~~~ 392 (398)
T 1kol_A 378 EFDAGVPKKFVIDPH 392 (398)
T ss_dssp HHHHTCSCEEEECTT
T ss_pred HHhCCCceEEEEEeC
Confidence 998877689999875
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=402.53 Aligned_cols=339 Identities=23% Similarity=0.377 Sum_probs=278.8
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
|+|+++...+..+++++.++|.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|++
T Consensus 15 mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~v 94 (366)
T 1yqd_A 15 VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV 94 (366)
T ss_dssp EEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred eeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCCC
Confidence 34444444444445999999999999999999999999999999999887665578999999999999999999999999
Q ss_pred CCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 88 GDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 88 Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
||||++.+. .+|+.|.+|+.++++.|.+.... ..|.. ..| ....|+|+||+.+|++.++++|++
T Consensus 95 GDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~-~~g-------------~~~~G~~aey~~v~~~~~~~~P~~ 159 (366)
T 1yqd_A 95 GDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIY-HDG-------------TITYGGYSNHMVANERYIIRFPDN 159 (366)
T ss_dssp TCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBC-TTS-------------CBCCCSSBSEEEEEGGGCEECCTT
T ss_pred CCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccc-cCC-------------CcCCCccccEEEEchhhEEECCCC
Confidence 999987664 68999999999999999754321 00100 000 112359999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCC-CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEe
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVE-PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV 244 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~ 244 (379)
+++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|+++++
T Consensus 160 ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~ 237 (366)
T 1yqd_A 160 MPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFL 237 (366)
T ss_dssp SCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEE
Confidence 999999999999999999864 46788 99999999999999999999999999 8999999999998887 89999999
Q ss_pred CCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
++++ . +.+++.+ +++|+|||++|....++.++++++++ |+++.+|.... ...++...++. ++++.++..+
T Consensus 238 ~~~~--~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~i~g~~~~ 308 (366)
T 1yqd_A 238 VSRD--Q---EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEK--PLELPAFSLIAGRKIVAGSGIG 308 (366)
T ss_dssp ETTC--H---HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSS--CEEECHHHHHTTTCEEEECCSC
T ss_pred eccC--H---HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCC--CCCcCHHHHHhCCcEEEEecCC
Confidence 8865 3 2455555 38999999999866689999999996 99999998543 23344433333 7888877554
Q ss_pred CCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 324 GFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
. ..++++++++++++++++. + ++|||+|+++|++.+++++.. |+||+++
T Consensus 309 ~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 358 (366)
T 1yqd_A 309 G---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG 358 (366)
T ss_dssp C---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred C---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence 2 3578999999999999864 4 799999999999999988875 9999874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-53 Score=399.98 Aligned_cols=320 Identities=17% Similarity=0.203 Sum_probs=277.1
Q ss_pred CCCCccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEe
Q 016978 2 STEGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESV 78 (379)
Q Consensus 2 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~v 78 (379)
++++.|.+|||+++.+++.| +++.++|.|+|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++
T Consensus 21 ~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~v 100 (353)
T 4dup_A 21 QSMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGV 100 (353)
T ss_dssp --CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEE
T ss_pred ecCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEE
Confidence 45677889999999998876 9999999999999999999999999999999999987654 57999999999999999
Q ss_pred CCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 79 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
|++++++++||||+... .+ |+|+||+.+|++
T Consensus 101 G~~v~~~~vGdrV~~~~-------------------------------~~------------------G~~aey~~v~~~ 131 (353)
T 4dup_A 101 GPGVSGYAVGDKVCGLA-------------------------------NG------------------GAYAEYCLLPAG 131 (353)
T ss_dssp CTTCCSCCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGG
T ss_pred CCCCCCCCCCCEEEEec-------------------------------CC------------------CceeeEEEEcHH
Confidence 99999999999997532 22 399999999999
Q ss_pred ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 159 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.+++
T Consensus 132 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~ 210 (353)
T 4dup_A 132 QILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER 210 (353)
T ss_dssp GEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred HcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 999999999999999999999999999889999999999999965 9999999999999999 89999999999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccE
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRV 316 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~ 316 (379)
+|+++++++++ .++.+.+++.+.+++|++|||+|. ..+..++++++++ |+++.+|.........++...++ ++++
T Consensus 211 lGa~~~~~~~~--~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~ 286 (353)
T 4dup_A 211 LGAKRGINYRS--EDFAAVIKAETGQGVDIILDMIGA-AYFERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLT 286 (353)
T ss_dssp HTCSEEEETTT--SCHHHHHHHHHSSCEEEEEESCCG-GGHHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCE
T ss_pred cCCCEEEeCCc--hHHHHHHHHHhCCCceEEEECCCH-HHHHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCce
Confidence 99999999887 788889999884499999999998 4689999999996 99999997643221113333333 3888
Q ss_pred EEeeecCCCccc-------ccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 317 WKGTAFGGFKSR-------SQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 317 i~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.++........ ..++++++++++|+++ ++++++|+++|+++|++.+++++.. |+||++
T Consensus 287 i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~ 353 (353)
T 4dup_A 287 VTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA--PVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV 353 (353)
T ss_dssp EEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 888876554211 1167899999999986 5689999999999999999998876 999975
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=415.99 Aligned_cols=346 Identities=18% Similarity=0.195 Sum_probs=289.5
Q ss_pred CCCCccccceeeeeecCC---------------CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC--------
Q 016978 2 STEGQVITCKAAVAWEPN---------------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-------- 58 (379)
Q Consensus 2 ~~~~~~~~~~a~~~~~~~---------------~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-------- 58 (379)
.+++.|.+|||+++.+++ ++++++++|.|+|+++||||||.+++||++|++...+..
T Consensus 23 ~~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~ 102 (456)
T 3krt_A 23 AALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLE 102 (456)
T ss_dssp HHSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHH
T ss_pred ccCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhh
Confidence 345678899999999872 349999999999999999999999999999986643211
Q ss_pred ---------CCCCCC-cccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCC
Q 016978 59 ---------PEGLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128 (379)
Q Consensus 59 ---------~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~ 128 (379)
...++| .++|||++|+|+++|++|++|++||||++.+ ..|..|..|..+..+.|.+... +|....+
T Consensus 103 ~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~-~~c~~~~~~~~~~~~~c~~~~~---~G~~~~~ 178 (456)
T 3krt_A 103 RYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHC-LSVELESSDGHNDTMLDPEQRI---WGFETNF 178 (456)
T ss_dssp HHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECC-EECCCCSGGGTTSGGGCTTCEE---TTTTSSS
T ss_pred hccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeC-CcccccccccccccccCccccc---cccCCCC
Confidence 012467 6899999999999999999999999999864 4688899999999999987764 3433122
Q ss_pred CccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhc--cCCCCCCEEEEEcC-Ch
Q 016978 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNT--AKVEPGSIVAVFGL-GT 205 (379)
Q Consensus 129 g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-g~ 205 (379)
|+|+||+++|++.++++|+++++++||++++++.|||+++... +++++|++|||+|+ |+
T Consensus 179 ------------------G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~ 240 (456)
T 3krt_A 179 ------------------GGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGG 240 (456)
T ss_dssp ------------------CSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSH
T ss_pred ------------------CcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCH
Confidence 4999999999999999999999999999998999999988654 78999999999998 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC---------------chHHHHHHHhcCC-CccEEE
Q 016978 206 VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD---------------KPIQQVLVDLTDG-GVDYSF 269 (379)
Q Consensus 206 vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~---------------~~~~~~i~~~~~~-g~d~vi 269 (379)
+|++++|+|+.+|+ +|++++++++|+++++++|+++++++.+.+ ..+.+.+++.+++ ++|+||
T Consensus 241 vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvi 319 (456)
T 3krt_A 241 LGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVF 319 (456)
T ss_dssp HHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999 888888999999999999999999887622 1345788888887 999999
Q ss_pred EcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCc
Q 016978 270 ECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEY 348 (379)
Q Consensus 270 d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 348 (379)
||+|+ ..+..++.+++++ |+++.+|.... ....++...+. +++++.++..... .++.++++++++|+++ ++
T Consensus 320 d~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~ 391 (456)
T 3krt_A 320 EHPGR-ETFGASVFVTRKG-GTITTCASTSG-YMHEYDNRYLWMSLKRIIGSHFANY---REAWEANRLIAKGRIH--PT 391 (456)
T ss_dssp ECSCH-HHHHHHHHHEEEE-EEEEESCCTTC-SEEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CC
T ss_pred EcCCc-hhHHHHHHHhhCC-cEEEEEecCCC-cccccCHHHHHhcCeEEEEeccCCH---HHHHHHHHHHHcCCcc--cc
Confidence 99999 7799999999996 99999997643 23333333222 3678888765533 5677899999999987 46
Q ss_pred eeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 349 VTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 349 i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
++++|+|+|+++|++.+.+++.. |+||.+.
T Consensus 392 i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~ 422 (456)
T 3krt_A 392 LSKVYSLEDTGQAAYDVHRNLHQGKVGVLCL 422 (456)
T ss_dssp EEEEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred eeEEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 88999999999999999998876 9998763
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=414.32 Aligned_cols=346 Identities=17% Similarity=0.204 Sum_probs=285.4
Q ss_pred CCCCccccceeeeeecCC-------------CCeEEEEeeCCCCCCCeEEEEEeeeecccccccccc-------------
Q 016978 2 STEGQVITCKAAVAWEPN-------------KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS------------- 55 (379)
Q Consensus 2 ~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~------------- 55 (379)
.+++.|.+|||+++.+++ ++++++++|.|+|+++||+|||.+++||++|++...
T Consensus 17 ~~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~ 96 (447)
T 4a0s_A 17 EAAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQN 96 (447)
T ss_dssp HHSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHH
T ss_pred hccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhh
Confidence 345678999999999998 249999999999999999999999999999975422
Q ss_pred ---CCCCC-CCCC-cccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCc
Q 016978 56 ---GKDPE-GLFP-CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130 (379)
Q Consensus 56 ---g~~~~-~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~ 130 (379)
|.++. .++| .++|||++|+|+++|++|++|++||||++.+..+|+.|. |..+..+.|.+... +|+...+
T Consensus 97 ~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~~-- 170 (447)
T 4a0s_A 97 ARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETNF-- 170 (447)
T ss_dssp HTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSSS--
T ss_pred cccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCCC--
Confidence 22221 2466 699999999999999999999999999999888787776 55577899987664 3433122
Q ss_pred cccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhh--ccCCCCCCEEEEEcC-ChHH
Q 016978 131 SRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN--TAKVEPGSIVAVFGL-GTVG 207 (379)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-g~vG 207 (379)
|+|+||+.+|++.++++|+++++++||++++++.|||+++.. .+++++|++|||+|+ |++|
T Consensus 171 ----------------G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG 234 (447)
T 4a0s_A 171 ----------------GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLG 234 (447)
T ss_dssp ----------------CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred ----------------CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHH
Confidence 499999999999999999999999999999899999999864 488999999999998 9999
Q ss_pred HHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC----------------chHHHHHHHhcCCCccEEEEc
Q 016978 208 LAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD----------------KPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 208 ~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~----------------~~~~~~i~~~~~~g~d~vid~ 271 (379)
++++|+|+.+|+ +|++++++++++++++++|+++++++.+.+ ..+.+.+++.+.+++|++||+
T Consensus 235 ~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~ 313 (447)
T 4a0s_A 235 SYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEH 313 (447)
T ss_dssp HHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEEC
T ss_pred HHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEEC
Confidence 999999999999 888888999999999999999998764311 123677888884499999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCcee
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVT 350 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 350 (379)
+|. ..+..++.+++++ |+++.+|.... ....++...+. +++++.++.... ..++.++++++++|+++ ++++
T Consensus 314 ~G~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~ 385 (447)
T 4a0s_A 314 TGR-VTFGLSVIVARRG-GTVVTCGSSSG-YLHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFESGAVV--PAMS 385 (447)
T ss_dssp SCH-HHHHHHHHHSCTT-CEEEESCCTTC-SEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEE
T ss_pred CCc-hHHHHHHHHHhcC-CEEEEEecCCC-cccccCHHHHHhCCCEEEecCCCC---HHHHHHHHHHHHcCCcc--ccee
Confidence 998 5689999999996 99999997543 22333333222 367787776543 35788999999999987 5689
Q ss_pred eeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 351 HNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 351 ~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
++|+|+|+++||+.+.+++.. |+||.+.
T Consensus 386 ~~~~l~~~~~A~~~~~~~~~~GKvvv~~~ 414 (447)
T 4a0s_A 386 AVYPLAEAAEACRVVQTSRQVGKVAVLCM 414 (447)
T ss_dssp EEEEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 999999999999999988876 9998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=389.89 Aligned_cols=316 Identities=23% Similarity=0.294 Sum_probs=275.3
Q ss_pred CccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+.|.+|||+++.+++++ ++++++|.|+|+++||+|||.+++||++|++++.|.++ .++|.++|||++|+|+++|+++
T Consensus 4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~vG~~v 82 (334)
T 3qwb_A 4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGKGV 82 (334)
T ss_dssp -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEEECTTC
T ss_pred CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEEECCCC
Confidence 46788999999999987 99999999999999999999999999999999998765 3579999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEec-CcceE
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVA 161 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~~~ 161 (379)
++|++||||++. .+ |+|+||+.++ ++.++
T Consensus 83 ~~~~~GdrV~~~--------------------------------~~------------------G~~aey~~v~~~~~~~ 112 (334)
T 3qwb_A 83 TNFEVGDQVAYI--------------------------------SN------------------STFAQYSKISSQGPVM 112 (334)
T ss_dssp CSCCTTCEEEEE--------------------------------CS------------------SCSBSEEEEETTSSEE
T ss_pred CCCCCCCEEEEe--------------------------------eC------------------CcceEEEEecCcceEE
Confidence 999999999753 12 3999999999 99999
Q ss_pred ecCCCCCccc---cccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 162 KIDPQAPLDK---VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 162 ~iP~~~~~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
++|+++++++ |+++++.+.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++++++
T Consensus 113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE 191 (334)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 9999999999 88888899999999888889999999999985 9999999999999999 89999999999999999
Q ss_pred cCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-ecc
Q 016978 238 FGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGR 315 (379)
Q Consensus 238 lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~ 315 (379)
+|+++++++++ .++.+.+++.+.+ ++|++|||+|. ..++.++++++++ |+++.+|..... ...++...+. +++
T Consensus 192 ~ga~~~~~~~~--~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~ 266 (334)
T 3qwb_A 192 YGAEYLINASK--EDILRQVLKFTNGKGVDASFDSVGK-DTFEISLAALKRK-GVFVSFGNASGL-IPPFSITRLSPKNI 266 (334)
T ss_dssp TTCSEEEETTT--SCHHHHHHHHTTTSCEEEEEECCGG-GGHHHHHHHEEEE-EEEEECCCTTCC-CCCBCGGGGTTTTC
T ss_pred cCCcEEEeCCC--chHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEcCCCCC-CCCcchhhhhhCce
Confidence 99999999887 7899999999887 99999999998 6799999999996 999999986432 2233333333 377
Q ss_pred EEEeeecCCCc-ccc----cHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 316 VWKGTAFGGFK-SRS----QVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 316 ~i~~~~~~~~~-~~~----~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
++.++.+..+. ... .++++++++++|++++. ++++||++++++||+.+.+++.. |+||++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q 334 (334)
T 3qwb_A 267 TLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ 334 (334)
T ss_dssp EEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred EEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 77776554332 122 34689999999999865 88999999999999999998876 99999875
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=391.72 Aligned_cols=326 Identities=18% Similarity=0.186 Sum_probs=265.9
Q ss_pred CCccccceeeeeecCCCCeEEE-EeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 4 EGQVITCKAAVAWEPNKPLVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
++.|.+|||+++.+++. ++++ ++|.|+|+++||+|||.+++||++|++.+.+. ..+|.++|||++|+|+++|++|
T Consensus 6 m~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v 81 (371)
T 3gqv_A 6 FIPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDV 81 (371)
T ss_dssp CCCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTC
T ss_pred CCCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCC
Confidence 45667899999999987 9998 99999999999999999999999999988763 2468999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
++|++||||+. .|..|..+. . .+ |+|+||+.+|++.+++
T Consensus 82 ~~~~~GdrV~~-------~~~~~~~~~-------~---------~~------------------G~~aey~~v~~~~~~~ 120 (371)
T 3gqv_A 82 THIQVGDRVYG-------AQNEMCPRT-------P---------DQ------------------GAFSQYTVTRGRVWAK 120 (371)
T ss_dssp CSCCTTCEEEE-------ECCTTCTTC-------T---------TC------------------CSSBSEEECCTTCEEE
T ss_pred CCCCCCCEEEE-------eccCCCCCC-------C---------CC------------------CcCcCeEEEchhheEE
Confidence 99999999964 344443221 0 23 3999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhc-cCC-----------CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNT-AKV-----------EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|+++++++||++++++.|||+++.+. .++ ++|++|||+|+ |++|++++|+|+.+|+ +|+++. ++
T Consensus 121 ~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~ 198 (371)
T 3gqv_A 121 IPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SP 198 (371)
T ss_dssp CCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CG
T ss_pred CCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CH
Confidence 999999999999999999999998776 443 89999999998 9999999999999999 888885 78
Q ss_pred hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHh-ccCCceEEEEccCCCC----ccc
Q 016978 230 KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECC-HKGWGTSVIVGVAASG----QEI 304 (379)
Q Consensus 230 ~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~~G~iv~~g~~~~~----~~~ 304 (379)
+|+++++++|+++++++++ .++.+.+++.+++++|++|||+|++..+..+++++ +++ |+++.+|..... ..+
T Consensus 199 ~~~~~~~~lGa~~vi~~~~--~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~ 275 (371)
T 3gqv_A 199 HNFDLAKSRGAEEVFDYRA--PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMV 275 (371)
T ss_dssp GGHHHHHHTTCSEEEETTS--TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCE
T ss_pred HHHHHHHHcCCcEEEECCC--chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCcccccccccc
Confidence 9999999999999999987 78999999999889999999999988899999999 586 999999965421 111
Q ss_pred ccC---cceee-eccEEEeeecCCCcc------cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee--E
Q 016978 305 STR---PFQLV-TGRVWKGTAFGGFKS------RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL--R 372 (379)
Q Consensus 305 ~~~---~~~~~-~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~--K 372 (379)
... ...++ +++++.++....... .+.++++++++++|++++.+++++.|+|+++++||+.+.+++.. |
T Consensus 276 ~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkk 355 (371)
T 3gqv_A 276 TTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEK 355 (371)
T ss_dssp EEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCE
T ss_pred ceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEE
Confidence 111 11122 356665553221110 11245788999999999988888889999999999999998864 8
Q ss_pred EEEecCC
Q 016978 373 CVLKMQD 379 (379)
Q Consensus 373 vvi~~~~ 379 (379)
+||++++
T Consensus 356 vvv~~~~ 362 (371)
T 3gqv_A 356 LVVRLEG 362 (371)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 8888764
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=389.65 Aligned_cols=314 Identities=23% Similarity=0.274 Sum_probs=267.1
Q ss_pred CCccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCC
Q 016978 4 EGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~ 80 (379)
++.|.+|||+++.+++.| ++++++|.|+|+++||+|||.+++||++|++.+.|.++. .++|.++|||++|+|+++|+
T Consensus 16 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~ 95 (342)
T 4eye_A 16 TQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPE 95 (342)
T ss_dssp --CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCT
T ss_pred ccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECC
Confidence 456788999999998877 999999999999999999999999999999999998754 37899999999999999999
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
+++ |++||||++.. .+ |+|+||+.++++.+
T Consensus 96 ~v~-~~vGDrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~ 125 (342)
T 4eye_A 96 GSG-IKPGDRVMAFN-------------------------------FI------------------GGYAERVAVAPSNI 125 (342)
T ss_dssp TSS-CCTTCEEEEEC-------------------------------SS------------------CCSBSEEEECGGGE
T ss_pred CCC-CCCCCEEEEec-------------------------------CC------------------CcceEEEEEcHHHe
Confidence 999 99999997542 22 39999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg 239 (379)
+++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|
T Consensus 126 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g 204 (342)
T 4eye_A 126 LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVG 204 (342)
T ss_dssp EECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHT
T ss_pred EECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcC
Confidence 9999999999999999999999999888999999999999998 9999999999999999 9999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEE
Q 016978 240 VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVW 317 (379)
Q Consensus 240 ~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i 317 (379)
++++++++ .++.+.+++.+++ ++|++|||+|+ ..+..++++++++ |+++.+|..... ...++...++ +++++
T Consensus 205 a~~v~~~~---~~~~~~v~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i 278 (342)
T 4eye_A 205 ADIVLPLE---EGWAKAVREATGGAGVDMVVDPIGG-PAFDDAVRTLASE-GRLLVVGFAAGG-IPTIKVNRLLLRNASL 278 (342)
T ss_dssp CSEEEESS---TTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEE-EEEEEC-----------CCCCGGGTTCEE
T ss_pred CcEEecCc---hhHHHHHHHHhCCCCceEEEECCch-hHHHHHHHhhcCC-CEEEEEEccCCC-CCccCHHHHhhcCCEE
Confidence 99999876 4788889999988 99999999998 4689999999996 999999975432 2233333333 38888
Q ss_pred EeeecCCCc------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 318 KGTAFGGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 318 ~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.++..+.+. ..+++++++++++++ ++ ++++++|+++|+++|++.+.+++.. |+||+.
T Consensus 279 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P 342 (342)
T 4eye_A 279 IGVAWGEFLRTHADYLYETQAGLEKLVAEG-MR--PPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342 (342)
T ss_dssp EECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CC--CCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred EEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CC--CCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 887654321 124588899999999 55 5689999999999999999999986 999873
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=403.29 Aligned_cols=333 Identities=18% Similarity=0.233 Sum_probs=274.8
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCC-CeEEEEEeeeeccccccccccC--CCCCCCC---CcccccceeEEEEEeCCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQA-GEVRIKILFTALCHTDAYTWSG--KDPEGLF---PCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~-~~VlV~v~~~~i~~~D~~~~~g--~~~~~~~---p~~~G~e~~G~V~~vG~~v~ 83 (379)
|||+++.+++++++++++|.|+|++ +||+|||.+++||++|++.+.| .++..++ |.++|||++|+|++ ++ +
T Consensus 1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~ 77 (366)
T 2cdc_A 1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H 77 (366)
T ss_dssp CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence 7999999998779999999999999 9999999999999999999998 5543456 89999999999999 77 8
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
+|++||||++.+..+|+.|.+|+++++++|.+..... .|....+ |+|+||+.+|++.++++
T Consensus 78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~------------------G~~aey~~v~~~~~~~i 138 (366)
T 2cdc_A 78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGE-AGIHKMD------------------GFMREWWYDDPKYLVKI 138 (366)
T ss_dssp SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEE-ETTBEEC------------------CSCBSEEEECGGGEEEE
T ss_pred CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCccc-CCccCCC------------------CceeEEEEechHHeEEC
Confidence 9999999999999999999999999999999765310 0211022 49999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhh--h--ccCCC--C-------CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVW--N--TAKVE--P-------GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP- 229 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~- 229 (379)
|++++ ++|+ ++.++.|||+++. + .++++ + |++|||+|+|++|++++|+|+.+|+ +|+++++++
T Consensus 139 P~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~ 215 (366)
T 2cdc_A 139 PKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREP 215 (366)
T ss_dssp CGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred cCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCcc
Confidence 99999 7775 5668999999976 4 78888 8 9999999999999999999999999 999999998
Q ss_pred --hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHH-HHHHHHhccCCceEEEEccCCCCccccc
Q 016978 230 --KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM-RAALECCHKGWGTSVIVGVAASGQEIST 306 (379)
Q Consensus 230 --~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~iv~~g~~~~~~~~~~ 306 (379)
+++++++++|++++ + ++ ++.+.+++ +.+++|++||++|....+ +.++++++++ |+++.+|..... ...+
T Consensus 216 ~~~~~~~~~~~ga~~v-~-~~---~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~ 287 (366)
T 2cdc_A 216 TEVEQTVIEETKTNYY-N-SS---NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSG-SVPL 287 (366)
T ss_dssp CHHHHHHHHHHTCEEE-E-CT---TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCSC-EEEE
T ss_pred chHHHHHHHHhCCcee-c-hH---HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCCC-cccc
Confidence 89999999999988 6 43 45555655 446899999999997678 9999999996 999999986432 2344
Q ss_pred Ccce---e-eeccEEEeeecCCCcccccHHHHHHHHHcCCCC----CCCceeeeeecchHHHHHHH--HhcCCeeEEEEe
Q 016978 307 RPFQ---L-VTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK----VDEYVTHNMTLGEINEAFRY--MHGGDCLRCVLK 376 (379)
Q Consensus 307 ~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~i~~~~~~~~i~~A~~~--~~~~~~~Kvvi~ 376 (379)
+... + .+++++.++... ...+++++++++++|+++ +.++++++|||+|+++|++. ++++...|+||+
T Consensus 288 ~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~ 364 (366)
T 2cdc_A 288 DYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRIL 364 (366)
T ss_dssp EHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEE
T ss_pred ChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEe
Confidence 4333 3 337888876543 246899999999999977 66788999999999999998 554333499998
Q ss_pred cC
Q 016978 377 MQ 378 (379)
Q Consensus 377 ~~ 378 (379)
++
T Consensus 365 ~~ 366 (366)
T 2cdc_A 365 WE 366 (366)
T ss_dssp CC
T ss_pred cC
Confidence 74
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-52 Score=389.38 Aligned_cols=314 Identities=17% Similarity=0.237 Sum_probs=268.9
Q ss_pred ccceeeeeecCCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 016978 8 ITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 8 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
++|||+++.++++| ++++++|.|+|+++||+|||.+++||++|++.+.|.++. .++|.++|||++|+|+++|++++
T Consensus 3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~ 82 (340)
T 3gms_A 3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS 82 (340)
T ss_dssp CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence 57999999999998 999999999999999999999999999999999998765 37899999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
++++||||+... .+ |+|+||+.+|++.++++
T Consensus 83 ~~~vGdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~v 113 (340)
T 3gms_A 83 RELIGKRVLPLR-------------------------------GE------------------GTWQEYVKTSADFVVPI 113 (340)
T ss_dssp GGGTTCEEEECS-------------------------------SS------------------CSSBSEEEEEGGGEEEC
T ss_pred CCCCCCEEEecC-------------------------------CC------------------ccceeEEEcCHHHeEEC
Confidence 999999997431 22 39999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
|+++++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+++
T Consensus 114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~ 192 (340)
T 3gms_A 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY 192 (340)
T ss_dssp CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence 9999999999999999999999989999999999999998 6999999999999999 9999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee--eccEEEe
Q 016978 243 FVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV--TGRVWKG 319 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~--~~~~i~~ 319 (379)
++++++ .++.+.+++.+++ ++|++|||+|... ...++.+++++ |+++.+|.... ...+ ...+. ..+.+..
T Consensus 193 ~~~~~~--~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~--~~~~~~~~~~~~~~ 265 (340)
T 3gms_A 193 VIDTST--APLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPN-GHFLTIGLLSG-IQVN--WAEIVTKAKVHANI 265 (340)
T ss_dssp EEETTT--SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTTS-CCCC--HHHHHHTSCCEEEE
T ss_pred EEeCCc--ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCC-CEEEEEeecCC-CCCC--HHHhhhcccceEEE
Confidence 999877 7889999999988 9999999999965 56677999996 99999998643 2221 11111 1223332
Q ss_pred eecCC-------CcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC-e-eEEEEecCC
Q 016978 320 TAFGG-------FKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD-C-LRCVLKMQD 379 (379)
Q Consensus 320 ~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~-~-~Kvvi~~~~ 379 (379)
..+.. .....+++++++++++|++++.+ ++++||++|+++|++.+.+++ . .|+||++.|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~ 333 (340)
T 3gms_A 266 FHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE 333 (340)
T ss_dssp CCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred EEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 22211 11235788999999999999865 789999999999999999987 4 499998754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=385.39 Aligned_cols=313 Identities=23% Similarity=0.285 Sum_probs=270.0
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
+|||++++++++| ++++++|.|+|+++||+|||.+++||++|++.+.|.++..++|.++|||++|+|+++|+++++|+
T Consensus 1 MMkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~ 80 (325)
T 3jyn_A 1 MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFK 80 (325)
T ss_dssp CEEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred CcEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence 3899999999987 99999999999999999999999999999999999887667899999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||+.... .+| +|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~~------------------------------~~G------------------~~aey~~v~~~~~~~~P~~ 112 (325)
T 3jyn_A 81 VGDRVAYGTG------------------------------PLG------------------AYSEVHVLPEANLVKLADS 112 (325)
T ss_dssp TTCEEEESSS------------------------------SSC------------------CSBSEEEEEGGGEEECCTT
T ss_pred CCCEEEEecC------------------------------CCc------------------cccceEEecHHHeEECCCC
Confidence 9999975321 233 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++||++++...|+|+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++++++
T Consensus 113 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~ 191 (325)
T 3jyn_A 113 VSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETID 191 (325)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence 9999999999999999999988899999999999985 9999999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee--ccEEEeeec
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT--GRVWKGTAF 322 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~--~~~i~~~~~ 322 (379)
+++ .++.+.+++.+++ ++|++|||+|. ..+..++++++++ |+++.+|..... ...++...+.. .+.+.+..+
T Consensus 192 ~~~--~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (325)
T 3jyn_A 192 YSH--EDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPR-GLVVSFGNASGP-VSGVNLGILAQKDSVYVTRPTL 266 (325)
T ss_dssp TTT--SCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHTTEEEE-EEEEECCCTTCC-CCSCCTHHHHHTTSCEEECCCH
T ss_pred CCC--ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhcCC-CEEEEEecCCCC-CCCCCHHHHhhcCcEEEEeeee
Confidence 887 7899999999987 99999999999 6699999999996 999999986432 12333332222 234443332
Q ss_pred CCC-ccccc----HHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 323 GGF-KSRSQ----VPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 323 ~~~-~~~~~----~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.+ ..+.+ ++++++++++|++++. ++++||++|+++|++.+.+++.. |+||++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p 325 (325)
T 3jyn_A 267 GSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIELSARRTTGSTILIP 325 (325)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred eeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 221 12233 4578999999999975 78999999999999999999887 999863
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=383.60 Aligned_cols=313 Identities=18% Similarity=0.202 Sum_probs=264.7
Q ss_pred ccceeeeeecCC---C--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 8 ITCKAAVAWEPN---K--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 8 ~~~~a~~~~~~~---~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
|+|||+++.++| . .++++++|.|+|+++||+|||.+++||++|++.+.|. ...+|.++|||++|+|+++|+++
T Consensus 1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v 78 (346)
T 3fbg_A 1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV 78 (346)
T ss_dssp -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence 479999999987 2 3999999999999999999999999999999998886 34679999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
+++++||||+..... ..+ |+|+||+.+|++.+++
T Consensus 79 ~~~~~GdrV~~~~~~----------------------------~~~------------------G~~aey~~v~~~~~~~ 112 (346)
T 3fbg_A 79 TMFNQGDIVYYSGSP----------------------------DQN------------------GSNAEYQLINERLVAK 112 (346)
T ss_dssp CSCCTTCEEEECCCT----------------------------TSC------------------CSSBSEEEEEGGGEEE
T ss_pred CcCCCCCEEEEcCCC----------------------------CCC------------------cceeEEEEEChHHeEE
Confidence 999999999853210 023 3999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCC------CCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE------PGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~------~g~~VlI~G-ag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~ 235 (379)
+|+++++++||++++++.|||+++.+.++++ +|++|||+| +|++|++++|+|+.+|+ +|+++++++++++++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~ 191 (346)
T 3fbg_A 113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT 191 (346)
T ss_dssp CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 9999999999999999999999998889998 999999995 59999999999999999 999999999999999
Q ss_pred HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-ec
Q 016978 236 KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TG 314 (379)
Q Consensus 236 ~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~ 314 (379)
+++|+++++++++ ++.+.+++...+++|+||||+|++..+..++++++++ |+++.+|.... .++...+. ++
T Consensus 192 ~~lGa~~vi~~~~---~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~~~----~~~~~~~~~~~ 263 (346)
T 3fbg_A 192 KKMGADIVLNHKE---SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAFEN----DQDLNALKPKS 263 (346)
T ss_dssp HHHTCSEEECTTS---CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCCSS----CBCGGGGTTTT
T ss_pred HhcCCcEEEECCc---cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC----CCccccccccc
Confidence 9999999999865 5778888874449999999999988889999999996 99998875322 22233333 26
Q ss_pred cEEEeeecCCCc---------ccccHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 315 RVWKGTAFGGFK---------SRSQVPWLVDKYMKKEIKVDEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 315 ~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
+++.++...... ..+.++++++++++|++++ .++++| +++++++|++.+.+++.. |+||++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~ 339 (346)
T 3fbg_A 264 LSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQP--TTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE 339 (346)
T ss_dssp CEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCC--CEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred eEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEEC--CccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence 677765433210 1245788999999999874 477777 899999999999999987 99999864
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=385.76 Aligned_cols=313 Identities=21% Similarity=0.275 Sum_probs=267.0
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC--CCCCcccccceeEEEEEeCCCCCC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
|.+|||+++.+++++++++++|.|+|+++||+|||.+++||++|++++.|..+. .++|.++|||++|+|+++|+++++
T Consensus 5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~ 84 (343)
T 3gaz_A 5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS 84 (343)
T ss_dssp -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence 568999999999988999999999999999999999999999999999886532 468999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||++.... ....+ |+|+||+.+|++.++++|
T Consensus 85 ~~vGdrV~~~~~g--------------------------~~~~~------------------G~~aey~~v~~~~~~~~P 120 (343)
T 3gaz_A 85 FRVGDAVFGLTGG--------------------------VGGLQ------------------GTHAQFAAVDARLLASKP 120 (343)
T ss_dssp CCTTCEEEEECCS--------------------------STTCC------------------CSSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCC--------------------------CCCCC------------------cceeeEEEecHHHeeeCC
Confidence 9999999864210 00023 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++ .+++++++++++|++.
T Consensus 121 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~- 197 (343)
T 3gaz_A 121 AALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP- 197 (343)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-
T ss_pred CCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-
Confidence 999999999999999999999889999999999999995 9999999999999999 89999 8999999999999998
Q ss_pred eCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeee
Q 016978 244 VNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTA 321 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~ 321 (379)
++ ++ .++.+.+++.+.+ ++|++|||+|+ ..+..++.+++++ |+++.+|... .++...+ .+++++.+++
T Consensus 198 i~-~~--~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~~~~~~~g~~ 267 (343)
T 3gaz_A 198 ID-AS--REPEDYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRF-GHVVSCLGWG-----THKLAPLSFKQATYSGVF 267 (343)
T ss_dssp EE-TT--SCHHHHHHHHHTTSCEEEEEESSCT-HHHHHHHHHEEEE-EEEEESCCCS-----CCCCHHHHHTTCEEEECC
T ss_pred ec-cC--CCHHHHHHHHhcCCCceEEEECCCc-HHHHHHHHHHhcC-CeEEEEcccC-----ccccchhhhcCcEEEEEE
Confidence 66 44 6788889998887 99999999998 6799999999996 9999998754 1222222 2377777765
Q ss_pred cCCC--------cccccHHHHHHHHHcCCCCCCCcee-eeeecchHHHHHHHHhcCCe----e-EEEEecC
Q 016978 322 FGGF--------KSRSQVPWLVDKYMKKEIKVDEYVT-HNMTLGEINEAFRYMHGGDC----L-RCVLKMQ 378 (379)
Q Consensus 322 ~~~~--------~~~~~~~~~~~~~~~~~i~~~~~i~-~~~~~~~i~~A~~~~~~~~~----~-Kvvi~~~ 378 (379)
.... ...++++++++++++|++++ .++ ++||++|+++|++.+.+++. . |+|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~ 336 (343)
T 3gaz_A 268 TLHTLLANEGLAHFGEMLREADALVQTGKLAP--RLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE 336 (343)
T ss_dssp TTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCC--CBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred eccchhcccchHHHHHHHHHHHHHHHCCCccc--CccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence 3211 11256889999999999874 577 79999999999999998775 3 9999874
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=387.47 Aligned_cols=314 Identities=23% Similarity=0.305 Sum_probs=260.5
Q ss_pred ccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
++|||+++.+++.+ ++++++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus 2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~ 81 (349)
T 4a27_A 2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG 81 (349)
T ss_dssp CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence 67999999999965 999999999999999999999999999999999998654 378999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||+... .+ |+|+||+.+|++.++++|
T Consensus 82 ~~~GdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~iP 112 (349)
T 4a27_A 82 YEIGDRVMAFV-------------------------------NY------------------NAWAEVVCTPVEFVYKIP 112 (349)
T ss_dssp CCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGEEECC
T ss_pred CCCCCEEEEec-------------------------------CC------------------CcceEEEEecHHHeEECC
Confidence 99999997542 22 399999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF 243 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v 243 (379)
+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|..+|+++. ++++++.++ +|++++
T Consensus 113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~ 190 (349)
T 4a27_A 113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL 190 (349)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence 999999999999999999999888899999999999998 99999999999999755888886 678888888 999999
Q ss_pred eCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC--cc-------------cccCc
Q 016978 244 VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG--QE-------------ISTRP 308 (379)
Q Consensus 244 ~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~--~~-------------~~~~~ 308 (379)
++ .+ .++.+.+++.+++++|+||||+|++. +..++++++++ |+++.+|..... .. ..+++
T Consensus 191 ~~-~~--~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (349)
T 4a27_A 191 FD-RN--ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNP 265 (349)
T ss_dssp EE-TT--SCHHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------CH
T ss_pred Ec-CC--ccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccCH
Confidence 98 54 68889999988679999999999955 68999999996 999999975311 00 11223
Q ss_pred ceeee-ccEEEeeecCCCc--------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 309 FQLVT-GRVWKGTAFGGFK--------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 309 ~~~~~-~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
..++. +.++.++.+..+. ..++++++++++++|+++ ++++++|+++|+++|++.+.+++.. |+||+++
T Consensus 266 ~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~ 343 (349)
T 4a27_A 266 IKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK--PVVDSLWALEEVKEAMQRIHDRGNIGKLILDVE 343 (349)
T ss_dssp HHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCC--CCEEEEECGGGHHHHHHHHHTTCCSSEEEEETT
T ss_pred HHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCcc--ccccceECHHHHHHHHHHHHhCCCCceEEEecC
Confidence 33333 6777776653211 145789999999999987 5689999999999999999998876 9999986
Q ss_pred C
Q 016978 379 D 379 (379)
Q Consensus 379 ~ 379 (379)
+
T Consensus 344 ~ 344 (349)
T 4a27_A 344 K 344 (349)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=385.02 Aligned_cols=315 Identities=15% Similarity=0.193 Sum_probs=266.3
Q ss_pred ccccceeeeeecC---CCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCC
Q 016978 6 QVITCKAAVAWEP---NKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 6 ~~~~~~a~~~~~~---~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 80 (379)
.+++|||+++.++ +.| ++++++|.|+|+++||+|||.+++||++|++.+.|..+...+|.++|||++|+|+++|+
T Consensus 19 ~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~ 98 (363)
T 4dvj_A 19 YFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGP 98 (363)
T ss_dssp CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEECT
T ss_pred hhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeCC
Confidence 3478999999877 333 99999999999999999999999999999999999877667899999999999999999
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
+++++++||||+..... ..+ |+|+||+.+|++.+
T Consensus 99 ~v~~~~vGdrV~~~~~~----------------------------~~~------------------G~~aey~~v~~~~~ 132 (363)
T 4dvj_A 99 DVTLFRPGDEVFYAGSI----------------------------IRP------------------GTNAEFHLVDERIV 132 (363)
T ss_dssp TCCSCCTTCEEEECCCT----------------------------TSC------------------CSCBSEEEEEGGGC
T ss_pred CCCCCCCCCEEEEccCC----------------------------CCC------------------ccceEEEEeCHHHe
Confidence 99999999999853210 023 39999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCC-----CCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHH
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVE-----PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFD 233 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~-----~g~~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~ 233 (379)
+++|+++++++||++++++.|||+++.+.++++ +|++|||+|+ |++|++++|+|+.+ |+ +|++++++++|++
T Consensus 133 ~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~ 211 (363)
T 4dvj_A 133 GRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQE 211 (363)
T ss_dssp EECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHH
T ss_pred eECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHH
Confidence 999999999999999999999999988888888 8999999985 99999999999985 77 9999999999999
Q ss_pred HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee
Q 016978 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT 313 (379)
Q Consensus 234 ~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~ 313 (379)
+++++|+++++++++ ++.+.+++...+++|+||||+|++..+..++++++++ |+++.+|... .++...+..
T Consensus 212 ~~~~lGad~vi~~~~---~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~ 282 (363)
T 4dvj_A 212 WVKSLGAHHVIDHSK---PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDDPS-----AFDIMLFKR 282 (363)
T ss_dssp HHHHTTCSEEECTTS---CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSCCS-----SCCGGGGTT
T ss_pred HHHHcCCCEEEeCCC---CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECCCC-----ccchHHHhh
Confidence 999999999999864 5788888875459999999999987899999999996 9999996532 233333333
Q ss_pred -ccEEEeeecCCC-----cc----cccHHHHHHHHHcCCCCCCCceeeee---ecchHHHHHHHHhcCCee-EEEEecC
Q 016978 314 -GRVWKGTAFGGF-----KS----RSQVPWLVDKYMKKEIKVDEYVTHNM---TLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 314 -~~~i~~~~~~~~-----~~----~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
++++.++..... .. .+.++++++++++|++++ .++++| +++|+++|++.+.+++.. |+||++.
T Consensus 283 k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~ 359 (363)
T 4dvj_A 283 KAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRT--TLTNRLSPINAANLKQAHALVESGTARGKVVIEGF 359 (363)
T ss_dssp TTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCC--CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred ccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeec--cccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence 667766543321 11 245788999999999985 466666 999999999999999876 9999874
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-51 Score=383.11 Aligned_cols=320 Identities=21% Similarity=0.282 Sum_probs=268.2
Q ss_pred CccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCC
Q 016978 5 GQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~ 81 (379)
+.+.+|||+++.+++.+ ++++++|.|+|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|++
T Consensus 18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~ 97 (354)
T 2j8z_A 18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG 97 (354)
T ss_dssp ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence 45578999999999864 8999999999999999999999999999999998876543 47899999999999999999
Q ss_pred C-CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 82 V-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 82 v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
| ++|++||||++.. .+ |+|+||+.+|++.+
T Consensus 98 v~~~~~vGdrV~~~~-------------------------------~~------------------G~~aey~~v~~~~~ 128 (354)
T 2j8z_A 98 CQGHWKIGDTAMALL-------------------------------PG------------------GGQAQYVTVPEGLL 128 (354)
T ss_dssp C--CCCTTCEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGE
T ss_pred cCCCCCCCCEEEEec-------------------------------CC------------------CcceeEEEeCHHHc
Confidence 9 9999999997531 12 39999999999999
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg 239 (379)
+++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++++.++++|
T Consensus 129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g 207 (354)
T 2j8z_A 129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG 207 (354)
T ss_dssp EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence 9999999999999999999999999888899999999999986 9999999999999999 8999999999999999999
Q ss_pred CceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCc-ceee-eccE
Q 016978 240 VTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP-FQLV-TGRV 316 (379)
Q Consensus 240 ~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~~~-~~~~ 316 (379)
++.++++++ .++.+.+.+.+.+ ++|++|||+|+. .+..++++++++ |+++.+|.... ....++. ..++ ++++
T Consensus 208 ~~~~~~~~~--~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~ 282 (354)
T 2j8z_A 208 AAAGFNYKK--EDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALD-GRWVLYGLMGG-GDINGPLFSKLLFKRGS 282 (354)
T ss_dssp CSEEEETTT--SCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEE-EEEEECCCTTC-SCCCSCHHHHHHHTTCE
T ss_pred CcEEEecCC--hHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCC-CEEEEEeccCC-CccCCChhHHHHhCCCE
Confidence 999998876 6788888888876 899999999995 688999999996 99999997543 2233443 3333 3788
Q ss_pred EEeeecCCCccc------c-cHHHHHHHHHcC-CCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 317 WKGTAFGGFKSR------S-QVPWLVDKYMKK-EIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 317 i~~~~~~~~~~~------~-~~~~~~~~~~~~-~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
+.++........ . ..+++++++++| ++++.++++++|||+|+++|++.+.+++.. |+||++++
T Consensus 283 i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 354 (354)
T 2j8z_A 283 LITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ 354 (354)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred EEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 888765433210 0 123577888889 444456789999999999999999988765 99999864
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=380.81 Aligned_cols=309 Identities=19% Similarity=0.234 Sum_probs=258.9
Q ss_pred ccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC-----CCCCCCcccccceeEEEEEe
Q 016978 6 QVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-----PEGLFPCILGHEAAGIVESV 78 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-----~~~~~p~~~G~e~~G~V~~v 78 (379)
.+++|||+++.++++| ++++++|.|+|+++||+|||.+++||++|++.+.|.. ....+|.++|||++|+|+++
T Consensus 3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v 82 (321)
T 3tqh_A 3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL 82 (321)
T ss_dssp --CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred ccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence 3467999999999987 9999999999999999999999999999999998831 23467999999999999999
Q ss_pred CCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCc
Q 016978 79 GEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDV 158 (379)
Q Consensus 79 G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 158 (379)
|+++++|++||||++.+..++ .+ |+|+||+.+|++
T Consensus 83 G~~v~~~~~GdrV~~~~~~~~---------------------------~~------------------G~~aey~~v~~~ 117 (321)
T 3tqh_A 83 GSDVNNVNIGDKVMGIAGFPD---------------------------HP------------------CCYAEYVCASPD 117 (321)
T ss_dssp CTTCCSCCTTCEEEEECSTTT---------------------------CC------------------CCSBSEEEECGG
T ss_pred CCCCCCCCCCCEEEEccCCCC---------------------------CC------------------CcceEEEEecHH
Confidence 999999999999987642111 23 399999999999
Q ss_pred ceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 159 SVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 159 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-ag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
.++++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|+++. ++++++++++
T Consensus 118 ~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~ 194 (321)
T 3tqh_A 118 TIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA 194 (321)
T ss_dssp GEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH
T ss_pred HhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH
Confidence 9999999999999999999999999997 889999999999997 59999999999999999 899885 5667999999
Q ss_pred cCCceEeCCCCCCch-HHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccE
Q 016978 238 FGVTEFVNPKDHDKP-IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV 316 (379)
Q Consensus 238 lg~~~v~~~~~~~~~-~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 316 (379)
+|+++++++++ .+ +.+.+ .++|+||||+|++. ...++++++++ |+++.+|....... . .....++++
T Consensus 195 lGa~~~i~~~~--~~~~~~~~-----~g~D~v~d~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~--~-~~~~~~~~~ 262 (321)
T 3tqh_A 195 LGAEQCINYHE--EDFLLAIS-----TPVDAVIDLVGGDV-GIQSIDCLKET-GCIVSVPTITAGRV--I-EVAKQKHRR 262 (321)
T ss_dssp HTCSEEEETTT--SCHHHHCC-----SCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCSTTHHHH--H-HHHHHTTCE
T ss_pred cCCCEEEeCCC--cchhhhhc-----cCCCEEEECCCcHH-HHHHHHhccCC-CEEEEeCCCCchhh--h-hhhhhcceE
Confidence 99999999876 44 43332 47999999999966 59999999996 99999986432111 1 111123666
Q ss_pred EEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 317 WKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
+.++... ...+++++++++++++++++ .++++|+++|+++|++.+.+++.. |+||+++
T Consensus 263 ~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 321 (321)
T 3tqh_A 263 AFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKLVFKVR 321 (321)
T ss_dssp EECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred EEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 6664322 23568999999999999985 489999999999999999999876 9999874
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=392.09 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=264.0
Q ss_pred CCCCCccccceeeeee--cC---CCCeEEEEe---------eCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCc
Q 016978 1 MSTEGQVITCKAAVAW--EP---NKPLVIEDV---------QVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPC 65 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~--~~---~~~~~~~~~---------~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~ 65 (379)
|++++.|.+|||+++. ++ .+.++++++ |.|+|+++||+|||.+++||++|++.+.|.++.. .+|.
T Consensus 2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~ 81 (349)
T 3pi7_A 2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGR 81 (349)
T ss_dssp ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTS
T ss_pred CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCC
Confidence 8888899999999999 33 223888888 9999999999999999999999999999977543 6899
Q ss_pred ccccceeEEEEEeCCCC-CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccC
Q 016978 66 ILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFM 144 (379)
Q Consensus 66 ~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~ 144 (379)
++|||++|+|+++|++| ++|++||||++... .. .+
T Consensus 82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g---------------------------~~-~~---------------- 117 (349)
T 3pi7_A 82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFATG---------------------------LS-NW---------------- 117 (349)
T ss_dssp BCCSEEEEEEEEECSSHHHHHHTTCEEEEECT---------------------------TS-SC----------------
T ss_pred CccceEEEEEEEECCCccCCCCCCCEEEEecc---------------------------CC-CC----------------
Confidence 99999999999999999 99999999986521 00 23
Q ss_pred CcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCC-CEEEEEcC-ChHHHHHHHHHHHcCCCeE
Q 016978 145 GTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAGASRV 222 (379)
Q Consensus 145 ~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-g~vG~~a~~la~~~g~~~v 222 (379)
|+|+||+.+|++.++++|+++++++||++++.++|||+ +++.++ ++| ++|||+|+ |++|++++|+|+.+|+ +|
T Consensus 118 --G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~V 192 (349)
T 3pi7_A 118 --GSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RP 192 (349)
T ss_dssp --CSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EE
T ss_pred --ccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EE
Confidence 49999999999999999999999999999999999996 456677 666 78999854 9999999999999999 99
Q ss_pred EEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC
Q 016978 223 IGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG 301 (379)
Q Consensus 223 i~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~ 301 (379)
++++++++|+++++++|+++++++++ .++.+.+++.+++ ++|++|||+|+.. +..++++++++ |+++.+|....
T Consensus 193 i~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~- 267 (349)
T 3pi7_A 193 IVTVRRDEQIALLKDIGAAHVLNEKA--PDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKR-ARWIIYGRLDP- 267 (349)
T ss_dssp EEEESCGGGHHHHHHHTCSEEEETTS--TTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTT-CEEEECCCSCC-
T ss_pred EEEeCCHHHHHHHHHcCCCEEEECCc--HHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCC-CEEEEEeccCC-
Confidence 99999999999999999999999877 7899999999887 9999999999855 68999999996 99999997543
Q ss_pred cccccCc-ceee-eccEEEeeecCCCc------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEE
Q 016978 302 QEISTRP-FQLV-TGRVWKGTAFGGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRC 373 (379)
Q Consensus 302 ~~~~~~~-~~~~-~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kv 373 (379)
....++. ..++ +++++.+++...+. ..++++++++++++|+++ ++++++|+|+|+++|++.+.++...|+
T Consensus 268 ~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~gKv 345 (349)
T 3pi7_A 268 DATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TDVTAVVPLAEAIAWVPAELTKPNGKV 345 (349)
T ss_dssp SCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-CCEEEEHHHHHHHHHHHHTSSSSCE
T ss_pred CCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cccceEEcHHHHHHHHHHHhCCCCceE
Confidence 2334444 3333 48888887754321 134677888899999986 458899999999999996665544599
Q ss_pred EEec
Q 016978 374 VLKM 377 (379)
Q Consensus 374 vi~~ 377 (379)
||++
T Consensus 346 vl~p 349 (349)
T 3pi7_A 346 FIRP 349 (349)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=383.53 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=244.0
Q ss_pred ccceeeeeec-CCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 8 ITCKAAVAWE-PNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 8 ~~~~a~~~~~-~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
.+|||+++.+ ++. ++++++|.|+|+++||+|||.+++||++|++.+.|.++..++|.++|||++|+|+++|+++++|+
T Consensus 3 ~tMka~~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 81 (315)
T 3goh_A 3 EQHQVWAYQTKTHS-VTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM 81 (315)
T ss_dssp CEEEEEEEETTTTE-EEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred cceEEEEEeCCCCe-eEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence 4699999995 444 99999999999999999999999999999999999887778899999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+... .+ |+|+||+.+|++.++++|++
T Consensus 82 vGdrV~~~~~~~----------------------------~~------------------G~~aey~~v~~~~~~~iP~~ 115 (315)
T 3goh_A 82 LGRRVAYHTSLK----------------------------RH------------------GSFAEFTVLNTDRVMTLPDN 115 (315)
T ss_dssp TTCEEEEECCTT----------------------------SC------------------CSSBSEEEEETTSEEECCTT
T ss_pred CCCEEEEeCCCC----------------------------CC------------------cccccEEEEcHHHhccCcCC
Confidence 999998653200 23 39999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||+++++++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++++++
T Consensus 116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~- 191 (315)
T 3goh_A 116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR- 191 (315)
T ss_dssp SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES-
T ss_pred CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc-
Confidence 99999999999999999998 88999999999999999999999999999999 999998 899999999999999884
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 325 (379)
+ . .++ ++++|++|||+|++. ...++++++++ |+++.+|........+.....+ .+++.+.+++....
T Consensus 192 -d-----~---~~v-~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (315)
T 3goh_A 192 -E-----P---SQV-TQKYFAIFDAVNSQN-AAALVPSLKAN-GHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGD 259 (315)
T ss_dssp -S-----G---GGC-CSCEEEEECC--------TTGGGEEEE-EEEEEECCC----------CCSEEEEECGGGHHHHCC
T ss_pred -C-----H---HHh-CCCccEEEECCCchh-HHHHHHHhcCC-CEEEEEeCCCCccccchhhhcceeeEEEeecccccCC
Confidence 1 1 122 449999999999955 58899999996 9999997643222222111111 11333333322111
Q ss_pred c-----ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCeeEEEEecCC
Q 016978 326 K-----SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCLRCVLKMQD 379 (379)
Q Consensus 326 ~-----~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~Kvvi~~~~ 379 (379)
. ..+.++++++++++|+++ ++++++|||+|+++|++.+. +...|+||+++|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~~~ 315 (315)
T 3goh_A 260 RQDWQILMQQGEALLTLIAQGKME--IAAPDIFRFEQMIEALDHSE-QTKLKTVLTLNE 315 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSC--CCCCEEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred hhHHHHHHHHHHHHHHHHHCCCcc--cccceEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence 1 122477899999999987 56889999999999999998 444599999875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-50 Score=376.36 Aligned_cols=312 Identities=22% Similarity=0.334 Sum_probs=263.5
Q ss_pred cccceeeeeecCCCC--eEE-EEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCC
Q 016978 7 VITCKAAVAWEPNKP--LVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~--~~~-~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+.+|||+++.+++.| +++ +++|.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++
T Consensus 27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v 106 (351)
T 1yb5_A 27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA 106 (351)
T ss_dssp -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence 456999999988865 888 899999999999999999999999999999887643 3679999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
++|++||||++.+. .+ |+|+||+.+|++.+++
T Consensus 107 ~~~~vGdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~~ 138 (351)
T 1yb5_A 107 SAFKKGDRVFTSST------------------------------IS------------------GGYAEYALAADHTVYK 138 (351)
T ss_dssp TTCCTTCEEEESCC------------------------------SS------------------CSSBSEEEEEGGGEEE
T ss_pred CCCCCCCEEEEeCC------------------------------CC------------------CcceeEEEECHHHeEE
Confidence 99999999975421 22 3999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
+|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++
T Consensus 139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~ 217 (351)
T 1yb5_A 139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH 217 (351)
T ss_dssp CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence 99999999999999999999999877889999999999998 9999999999999999 899999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEe
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKG 319 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~ 319 (379)
.++++++ .++.+.+.+.+.+ ++|++||++|. ..+..++++++++ |+++.+|... ...+++..++ +++++.+
T Consensus 218 ~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~G~-~~~~~~~~~l~~~-G~iv~~g~~~---~~~~~~~~~~~~~~~i~g 290 (351)
T 1yb5_A 218 EVFNHRE--VNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIG 290 (351)
T ss_dssp EEEETTS--TTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEE
T ss_pred EEEeCCC--chHHHHHHHHcCCCCcEEEEECCCh-HHHHHHHHhccCC-CEEEEEecCC---CCccCHHHHHhCCcEEEE
Confidence 9998876 6788888888877 89999999998 4688999999996 9999999642 2333333333 3778888
Q ss_pred eecCCCcccccH----HHHHHHHHcCCCCCCCceeeeeecchHHHHHHH-HhcCCee-EEEEec
Q 016978 320 TAFGGFKSRSQV----PWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRY-MHGGDCL-RCVLKM 377 (379)
Q Consensus 320 ~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~-~~~~~~~-Kvvi~~ 377 (379)
+.+... ...++ +.+.+++.+++++ ++++++||++|+++|++. +++++.. |+||++
T Consensus 291 ~~~~~~-~~~~~~~~~~~l~~~~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~ 351 (351)
T 1yb5_A 291 VTLFSS-TKEEFQQYAAALQAGMEIGWLK--PVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 351 (351)
T ss_dssp CCGGGC-CHHHHHHHHHHHHHHHHHTCCC--CCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred EEeecC-CHHHHHHHHHHHHHHHHCCCcc--CccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 754322 12334 3455577788876 558899999999999998 6655554 999974
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=376.45 Aligned_cols=314 Identities=27% Similarity=0.383 Sum_probs=265.2
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC--CC-CCCCcccccceeEEEEEeCCCCCC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD--PE-GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~--~~-~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
|||+++.+++.| ++++++|.|+|+++||+|||.+++||++|++.+.|.+ +. ..+|.++|||++|+|+++|+++++
T Consensus 2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (333)
T 1wly_A 2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD 81 (333)
T ss_dssp CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence 899999998865 8999999999999999999999999999999998866 22 357999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||+..+. .+ |+|+||+.+|++.++++|
T Consensus 82 ~~~GdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~~iP 113 (333)
T 1wly_A 82 FTVGERVCTCLP------------------------------PL------------------GAYSQERLYPAEKLIKVP 113 (333)
T ss_dssp CCTTCEEEECSS------------------------------SC------------------CCSBSEEEEEGGGCEECC
T ss_pred CCCCCEEEEecC------------------------------CC------------------CcceeEEEecHHHcEeCC
Confidence 999999975321 12 399999999999999999
Q ss_pred CCCCccc--cccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 165 PQAPLDK--VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 165 ~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
+++++++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++
T Consensus 114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~ 192 (333)
T 1wly_A 114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH 192 (333)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence 9999999 89999999999999877889999999999997 9999999999999999 999999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcc-eee-ec--cE
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPF-QLV-TG--RV 316 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~-~~~-~~--~~ 316 (379)
.++++++ .++.+.+.+.+.+ ++|++||++|+ ..++.++++++++ |+++.+|.... ....++.. .++ ++ ++
T Consensus 193 ~~~d~~~--~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~ 267 (333)
T 1wly_A 193 HTINYST--QDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYGHASG-VADPIRVVEDLGVRGSLFI 267 (333)
T ss_dssp EEEETTT--SCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEE-EEEEECCCTTC-CCCCCCHHHHTTTTTSCEE
T ss_pred EEEECCC--HHHHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccC-CEEEEEecCCC-CcCCCChhHhhhhcCCcEE
Confidence 9998876 6788888888766 89999999999 7799999999996 99999997542 12233333 222 36 77
Q ss_pred EEeeecCCCcc----cccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 317 WKGTAFGGFKS----RSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 317 i~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
+.+++...... .++++++++++.+|+++ ++++++|||+|+++|++.+.+++.. |+||++++
T Consensus 268 i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 333 (333)
T 1wly_A 268 TRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA 333 (333)
T ss_dssp ECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred EEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 77764421111 23688999999999987 4589999999999999999988765 99999875
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=379.90 Aligned_cols=315 Identities=22% Similarity=0.308 Sum_probs=259.2
Q ss_pred ccccceeeeeecCCCC---eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCC
Q 016978 6 QVITCKAAVAWEPNKP---LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~ 81 (379)
+|.+|||+++.+++.| ++++++|.|+|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|++
T Consensus 23 m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~ 102 (357)
T 1zsy_A 23 MPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSN 102 (357)
T ss_dssp CCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECTT
T ss_pred CchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCCC
Confidence 4567999999999986 8899999999999999999999999999999999876543 57999999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
+++|++||||++.+. .+ |+|+||+.+|++.++
T Consensus 103 v~~~~vGdrV~~~~~------------------------------~~------------------G~~aey~~v~~~~~~ 134 (357)
T 1zsy_A 103 VTGLKPGDWVIPANA------------------------------GL------------------GTWRTEAVFSEEALI 134 (357)
T ss_dssp CCSCCTTCEEEESSS------------------------------CS------------------CCSBSEEEEEGGGEE
T ss_pred CCCCCCCCEEEEcCC------------------------------CC------------------ccceeEEecCHHHcE
Confidence 999999999986431 12 499999999999999
Q ss_pred ecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-h---hHHHHHH
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-P---KKFDRAK 236 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-~---~~~~~~~ 236 (379)
++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.++ + +++++++
T Consensus 135 ~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~ 213 (357)
T 1zsy_A 135 QVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK 213 (357)
T ss_dssp EECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH
T ss_pred ECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH
Confidence 999999999999999889999999888889999999999998 9999999999999999 56655443 2 3678899
Q ss_pred hcCCceEeCCCCCCchHHHHHHHhcCC--CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-e
Q 016978 237 NFGVTEFVNPKDHDKPIQQVLVDLTDG--GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-T 313 (379)
Q Consensus 237 ~lg~~~v~~~~~~~~~~~~~i~~~~~~--g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~ 313 (379)
++|+++++++++ ...+.+.+.+.+ ++|+||||+|++. ...++++++++ |+++.+|.... ....++...+. +
T Consensus 214 ~lGa~~vi~~~~---~~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~ 287 (357)
T 1zsy_A 214 SLGAEHVITEEE---LRRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARG-GTMVTYGGMAK-QPVVASVSLLIFK 287 (357)
T ss_dssp HTTCSEEEEHHH---HHSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTT-CEEEECCCCTT-CCBCCCHHHHHHS
T ss_pred hcCCcEEEecCc---chHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCC-CEEEEEecCCC-CCCCCCHHHHHhc
Confidence 999999987643 112345555554 5999999999865 56789999996 99999986432 23344433333 4
Q ss_pred ccEEEeeecCCCc-------ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 314 GRVWKGTAFGGFK-------SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 314 ~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
++++.+++...+. ..+.++++++++++|++++. +.++|||+|+++|++.+.+++.. |+||++
T Consensus 288 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 357 (357)
T 1zsy_A 288 DLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFISSKQILTM 357 (357)
T ss_dssp CCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred CceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence 7888887654221 12357889999999999865 56999999999999999888765 999975
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=379.97 Aligned_cols=317 Identities=16% Similarity=0.190 Sum_probs=261.5
Q ss_pred cccceeeeeecCCCC---eEEEEeeCCCCC--CCeEEEEEeeeeccccccccccCCCCC-CCCC---------cccccce
Q 016978 7 VITCKAAVAWEPNKP---LVIEDVQVAPPQ--AGEVRIKILFTALCHTDAYTWSGKDPE-GLFP---------CILGHEA 71 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~---~~~~~~~~p~~~--~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p---------~~~G~e~ 71 (379)
|++|||+++.++++| ++++++|.|+|. ++||+|||.+++||++|++.+.|.++. .++| .++|||+
T Consensus 1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~ 80 (364)
T 1gu7_A 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG 80 (364)
T ss_dssp CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence 467999999999976 899999999877 999999999999999999999987654 2466 8999999
Q ss_pred eEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeee
Q 016978 72 AGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQ 151 (379)
Q Consensus 72 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 151 (379)
+|+|+++|+++++|++||||++.+. .+ |+|+|
T Consensus 81 ~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------~~------------------G~~ae 112 (364)
T 1gu7_A 81 LFEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRT 112 (364)
T ss_dssp EEEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBS
T ss_pred EEEEEEeCCCCCcCCCCCEEEecCC------------------------------CC------------------Ccchh
Confidence 9999999999999999999986431 12 39999
Q ss_pred eEEecCcceEecCC-----------CCCccccccccccchhhhhhhhhccCCCCC-CEEEEEcC-ChHHHHHHHHHHHcC
Q 016978 152 YTVVHDVSVAKIDP-----------QAPLDKVCLLGCGVPTGLGAVWNTAKVEPG-SIVAVFGL-GTVGLAVAEGAKAAG 218 (379)
Q Consensus 152 ~~~v~~~~~~~iP~-----------~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~Ga-g~vG~~a~~la~~~g 218 (379)
|+.+|++.++++|+ ++++++||++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+.+|
T Consensus 113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G 192 (364)
T 1gu7_A 113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN 192 (364)
T ss_dssp EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence 99999999999999 899999999999999999998777789999 99999998 999999999999999
Q ss_pred CCeEEEEcCChhH----HHHHHhcCCceEeCCCCC-CchHHHHHHHhc--CC-CccEEEEcCCCHHHHHHHHHHhccCCc
Q 016978 219 ASRVIGIDIDPKK----FDRAKNFGVTEFVNPKDH-DKPIQQVLVDLT--DG-GVDYSFECIGNVSVMRAALECCHKGWG 290 (379)
Q Consensus 219 ~~~vi~v~~~~~~----~~~~~~lg~~~v~~~~~~-~~~~~~~i~~~~--~~-g~d~vid~~g~~~~~~~~~~~l~~~~G 290 (379)
+ +++++.++.++ +++++++|+++++++++. ..++.+.+++.+ ++ ++|+||||+|+.... .++++++++ |
T Consensus 193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~-G 269 (364)
T 1gu7_A 193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNN-G 269 (364)
T ss_dssp C-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTT-C
T ss_pred C-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccC-C
Confidence 9 77777655543 678899999999987521 146778888887 44 899999999996655 889999996 9
Q ss_pred eEEEEccCCCCcccccCcceee-eccEEEeeecCCCc------ccccHHHHHHHHHcCCCCCCCceeeeeec---chHHH
Q 016978 291 TSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK------SRSQVPWLVDKYMKKEIKVDEYVTHNMTL---GEINE 360 (379)
Q Consensus 291 ~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~i~~~~~~---~~i~~ 360 (379)
+++.+|.... ....++...++ +++++.+++...+. ..++++++++++++|++++.+. .+|++ +|+++
T Consensus 270 ~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~~~~l~~~~~ 346 (364)
T 1gu7_A 270 LMLTYGGMSF-QPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKS--IETLYDGTKPLHE 346 (364)
T ss_dssp EEEECCCCSS-CCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCC--EEEECCSSSCHHH
T ss_pred EEEEecCCCC-CCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccc--eEEecCchhhHHH
Confidence 9999997542 23344443333 37888877653211 1246889999999999997655 45555 59999
Q ss_pred HHHHHhcCCee-EEEEec
Q 016978 361 AFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 361 A~~~~~~~~~~-Kvvi~~ 377 (379)
|++.+.+++.. |+||++
T Consensus 347 A~~~~~~~~~~gKvvv~~ 364 (364)
T 1gu7_A 347 LYQDGVANSKDGKQLITY 364 (364)
T ss_dssp HHHHHHHTGGGSCEEEEC
T ss_pred HHHHHHhCCCCceEEEeC
Confidence 99999888765 999975
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=369.94 Aligned_cols=313 Identities=21% Similarity=0.261 Sum_probs=263.4
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcC
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
+|||+++.+++.| ++++++|.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus 1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (327)
T 1qor_A 1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIK 80 (327)
T ss_dssp -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCC
Confidence 3899999998865 89999999999999999999999999999999998775556899999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||. .. +. .+ |+|+||+.+|++.++++|++
T Consensus 81 ~GdrV~-~~----g~-------------------------~~------------------G~~aey~~v~~~~~~~iP~~ 112 (327)
T 1qor_A 81 AGDRVV-YA----QS-------------------------AL------------------GAYSSVHNIIADKAAILPAA 112 (327)
T ss_dssp TTCEEE-ES----CC-------------------------SS------------------CCSBSEEEEEGGGEEECCTT
T ss_pred CCCEEE-EC----CC-------------------------CC------------------ceeeeEEEecHHHcEECCCC
Confidence 999994 21 00 12 39999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++++++
T Consensus 113 l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~ 191 (327)
T 1qor_A 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 191 (327)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999877889999999999996 9999999999999999 9999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-e-ccEEEeeec
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-T-GRVWKGTAF 322 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~-~~~i~~~~~ 322 (379)
+.+ .++.+.+.+.+.+ ++|++||++| ...++.++++++++ |+++.+|..... ...++...++ + ++++.+...
T Consensus 192 ~~~--~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~-G~iv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 266 (327)
T 1qor_A 192 YRE--EDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRR-GLMVSFGNSSGA-VTGVNLGILNQKGSLYVTRPSL 266 (327)
T ss_dssp TTT--SCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEE-EEEEECCCTTCC-CCCBCTHHHHHTTSCEEECCCH
T ss_pred CCC--ccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCC-CEEEEEecCCCC-CCccCHHHHhhccceEEEccch
Confidence 876 6788888888776 8999999999 47799999999996 999999975432 2223332222 2 344444322
Q ss_pred CCCc-----ccccHHHHHHHHHcCCCCCCCcee--eeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 323 GGFK-----SRSQVPWLVDKYMKKEIKVDEYVT--HNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 323 ~~~~-----~~~~~~~~~~~~~~~~i~~~~~i~--~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+.+. ..+.+++++++++++++++ .++ ++|+|+|+++|++.+.+++.. |+||++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 327 (327)
T 1qor_A 267 QGYITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 1110 1345788999999999885 478 899999999999999988765 999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-49 Score=371.87 Aligned_cols=316 Identities=19% Similarity=0.226 Sum_probs=265.7
Q ss_pred cccceeeeeecCCC----CeEE-EEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCC
Q 016978 7 VITCKAAVAWEPNK----PLVI-EDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 7 ~~~~~a~~~~~~~~----~~~~-~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~ 80 (379)
+.+|||+++.+++. .+++ +++|.|+|+++||+|||.+++||++|++.+.|.++. .++|.++|||++|+|+++|+
T Consensus 21 ~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~ 100 (362)
T 2c0c_A 21 QSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGL 100 (362)
T ss_dssp CCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECT
T ss_pred hhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECC
Confidence 46799999999875 3889 999999999999999999999999999999987643 36899999999999999999
Q ss_pred CCC-CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 81 GVT-EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 81 ~v~-~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
+|+ +|++||||++.. + |+|+||+.+|++.
T Consensus 101 ~V~~~~~vGdrV~~~~--------------------------------~------------------G~~aey~~v~~~~ 130 (362)
T 2c0c_A 101 SASARYTVGQAVAYMA--------------------------------P------------------GSFAEYTVVPASI 130 (362)
T ss_dssp TGGGTCCTTCEEEEEC--------------------------------S------------------CCSBSEEEEEGGG
T ss_pred CccCCCCCCCEEEEcc--------------------------------C------------------CcceeEEEEcHHH
Confidence 999 999999997531 2 3999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l 238 (379)
++++|+. + .++|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++
T Consensus 131 ~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~ 207 (362)
T 2c0c_A 131 ATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL 207 (362)
T ss_dssp CEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred eEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc
Confidence 9999996 3 4677788899999999888889999999999996 9999999999999999 899999999999999999
Q ss_pred CCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcc-c--------ccCcc
Q 016978 239 GVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE-I--------STRPF 309 (379)
Q Consensus 239 g~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~-~--------~~~~~ 309 (379)
|+++++++++ .++.+.+++.+.+++|++|||+|. ..++.++++++++ |+++.+|....... . .+...
T Consensus 208 Ga~~~~~~~~--~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~ 283 (362)
T 2c0c_A 208 GCDRPINYKT--EPVGTVLKQEYPEGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTLPAK 283 (362)
T ss_dssp TCSEEEETTT--SCHHHHHHHHCTTCEEEEEECSCT-HHHHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTHHHH
T ss_pred CCcEEEecCC--hhHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHHhcC-CEEEEEeCCCCcCcccccccccccccHHH
Confidence 9999998876 678888888775589999999998 6799999999996 99999987532110 0 11111
Q ss_pred eeeeccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCc------eeeeeecchHHHHHHHHhcCCee-EEEEecCC
Q 016978 310 QLVTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEY------VTHNMTLGEINEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 310 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~------i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
.+.+++++.+++...+. ..++++++++++++|++++... +.+.|+|+++++|++.+.+++.. |+||+++|
T Consensus 284 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 362 (362)
T 2c0c_A 284 LLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH 362 (362)
T ss_dssp HHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred HHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence 12337888887654332 2356889999999999986533 23568999999999999988765 99999875
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=375.01 Aligned_cols=312 Identities=16% Similarity=0.186 Sum_probs=260.7
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++.++++| ++++++|.|+|+++||+|||.+++||++|++.+.|..+. .++|.++|||++|+|+++| +++++
T Consensus 1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~ 78 (324)
T 3nx4_A 1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH 78 (324)
T ss_dssp CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence 899999999987 889999999999999999999999999999999998764 3789999999999999999 57899
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+. . +|.. .+ |+|+||+.+|++.++++|++
T Consensus 79 vGdrV~~~~~---~---------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP~~ 115 (324)
T 3nx4_A 79 AGQEVLLTGW---G---------------------VGEN-HW------------------GGLAERARVKGDWLVALPAG 115 (324)
T ss_dssp TTCEEEEECT---T---------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred CCCEEEEccc---c---------------------cCCC-CC------------------CceeeEEecCHHHcEECCCC
Confidence 9999987541 0 1111 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhhh--hccCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+++++||++++.+.|||+++. .+.++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus 116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~ 194 (324)
T 3nx4_A 116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR 194 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence 999999999999999998875 445566633 4999998 9999999999999999 8999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~ 321 (379)
++++++ .+. +++.+.+++|++|||+|++ .++.++++++++ |+++.+|.... ...+++...++ +++++.++.
T Consensus 195 vi~~~~--~~~---~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~g~~ 266 (324)
T 3nx4_A 195 ILSRDE--FAE---SRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGG-FALPTTVMPFILRNVRLQGVD 266 (324)
T ss_dssp EEEGGG--SSC---CCSSCCCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTC-SEEEEESHHHHHHCCEEEECC
T ss_pred EEecCC--HHH---HHhhcCCCccEEEECCCcH-HHHHHHHHHhcC-CEEEEEecCCC-CCCCCCHHHHhhcCeEEEEEe
Confidence 998865 222 4555666999999999984 799999999996 99999998643 23344443333 388888876
Q ss_pred cCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 322 FGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 322 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
..... ..+.++++++++++|++++ . +++|+++|+++|++.+.+++.. |+||+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~g~l~~--~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~ 324 (324)
T 3nx4_A 267 SVMTPPARRAEAWARLVKDLPESFYAQ--A-ATEITLADAPKFADAIINNQVQGRTLVKIK 324 (324)
T ss_dssp STTCCHHHHHHHHHHHHHHSCHHHHHH--H-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred ccccChHHHHHHHHHHHHHHHcCCCCC--C-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence 54321 1245778889998898874 3 8999999999999999999886 9999875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=357.01 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=260.5
Q ss_pred ccceeeeeec--CC----CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccc----eeEEEEE
Q 016978 8 ITCKAAVAWE--PN----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE----AAGIVES 77 (379)
Q Consensus 8 ~~~~a~~~~~--~~----~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e----~~G~V~~ 77 (379)
++|||+++.+ +| +.++++++|.|+|+++||+|||.+++||++|+..+.+.. ...+|.++||| ++|+|++
T Consensus 6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~-~~~~p~~~G~e~g~~~~G~V~~ 84 (336)
T 4b7c_A 6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDAR-SYIPPVGIGEVMRALGVGKVLV 84 (336)
T ss_dssp CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSC-CSSCCCCTTSBCCCEEEEEEEE
T ss_pred ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccc-ccCCCCCCCcccCCceEEEEEe
Confidence 6799999986 22 239999999999999999999999999999988777643 23457778887 8999999
Q ss_pred eCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 78 VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 78 vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
. ++++|++||||++. |+|+||+.+|+
T Consensus 85 ~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~ 110 (336)
T 4b7c_A 85 S--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP 110 (336)
T ss_dssp E--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred c--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence 4 48899999999731 39999999999
Q ss_pred cceEecCCCCCcccc--ccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 016978 158 VSVAKIDPQAPLDKV--CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (379)
Q Consensus 158 ~~~~~iP~~~~~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~ 234 (379)
+.++++|+++++.++ +++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.
T Consensus 111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~ 189 (336)
T 4b7c_A 111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF 189 (336)
T ss_dssp TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 999999999988876 7788999999999889999999999999998 9999999999999999 99999999999999
Q ss_pred H-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC----C-cccccCc
Q 016978 235 A-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS----G-QEISTRP 308 (379)
Q Consensus 235 ~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~----~-~~~~~~~ 308 (379)
+ +++|+++++++.+ .++.+.+++.+.+++|++||++|. ..+..++++++++ |+++.+|.... . ....++.
T Consensus 190 ~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~ 265 (336)
T 4b7c_A 190 LVEELGFDGAIDYKN--EDLAAGLKRECPKGIDVFFDNVGG-EILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANY 265 (336)
T ss_dssp HHHTTCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGGC------CCTTT
T ss_pred HHHHcCCCEEEECCC--HHHHHHHHHhcCCCceEEEECCCc-chHHHHHHHHhhC-CEEEEEeecccccCCcccccchhH
Confidence 9 8999999999877 788899999886699999999997 6799999999996 99999987641 1 1123333
Q ss_pred ceee-eccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 309 FQLV-TGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 309 ~~~~-~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
..++ +++++.++....+. ..++++++++++++|++++. +...|+++|+++|++.+.+++.. |+||++
T Consensus 266 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 336 (336)
T 4b7c_A 266 LSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGLETFPETLLKLFSGENFGKLVLKV 336 (336)
T ss_dssp THHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 3333 38888888765432 23578899999999999976 44568999999999999998876 999985
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=364.58 Aligned_cols=316 Identities=18% Similarity=0.209 Sum_probs=256.0
Q ss_pred CccccceeeeeecCCCC--eEE-EEeeCCCC-CCCeEEEEEeeeeccccccccccCCCC-------------C--CCCCc
Q 016978 5 GQVITCKAAVAWEPNKP--LVI-EDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDP-------------E--GLFPC 65 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~-------------~--~~~p~ 65 (379)
+.+.+|||+++.+++.+ +++ +++|.|+| +++||+|||.+++||++|++.+.|..+ . ..+|.
T Consensus 17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~ 96 (375)
T 2vn8_A 17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL 96 (375)
T ss_dssp -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence 44578999999999865 888 99999985 999999999999999999999887531 1 23799
Q ss_pred ccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCC
Q 016978 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG 145 (379)
Q Consensus 66 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 145 (379)
++|||++|+|+++|++|++|++||||++.+... .+
T Consensus 97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~----------------------------~~----------------- 131 (375)
T 2vn8_A 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPW----------------------------KQ----------------- 131 (375)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEECCTT----------------------------SC-----------------
T ss_pred ccceeeeEEEEEeCCCCCCCCCCCEEEEecCCC----------------------------CC-----------------
Confidence 999999999999999999999999998653200 22
Q ss_pred cceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccC----CCCCCEEEEEcC-ChHHHHHHHHHHHcCCC
Q 016978 146 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK----VEPGSIVAVFGL-GTVGLAVAEGAKAAGAS 220 (379)
Q Consensus 146 ~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~ 220 (379)
|+|+||+.+|++.++++|+++++++||++++++.|||+++.+.++ +++|++|||+|+ |++|++++|+|+.+|+
T Consensus 132 -G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga- 209 (375)
T 2vn8_A 132 -GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA- 209 (375)
T ss_dssp -CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred -ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence 399999999999999999999999999999899999999877888 999999999995 9999999999999999
Q ss_pred eEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEccCC
Q 016978 221 RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 221 ~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+|++++ +++++++++++|+++++++++ .++.+.+++. +++|++|||+|+. ..+..++++++++ |+++.+|...
T Consensus 210 ~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~ 283 (375)
T 2vn8_A 210 HVTAVC-SQDASELVRKLGADDVIDYKS--GSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVTPF 283 (375)
T ss_dssp EEEEEE-CGGGHHHHHHTTCSEEEETTS--SCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCCSH
T ss_pred EEEEEe-ChHHHHHHHHcCCCEEEECCc--hHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCCCc
Confidence 899887 678899999999999999876 5677666653 4899999999996 4568889999996 9999998643
Q ss_pred CCcc----cccCc----ceee--------eccEEEeeecCCCcccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHH
Q 016978 300 SGQE----ISTRP----FQLV--------TGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFR 363 (379)
Q Consensus 300 ~~~~----~~~~~----~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~ 363 (379)
.... +.... ..++ .+..+.... .....++++++++++++|+++ ++++++|||+|+++|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~ 359 (375)
T 2vn8_A 284 LLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAF--FMASGPCLDDIAELVDAGKIR--PVIEQTFPFSKVPEAFL 359 (375)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECC--CCCCHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHH
T ss_pred ccccccccccchhheeehhhccccccccccCcceEEEE--eCCCHHHHHHHHHHHHCCCcc--cCcCeEECHHHHHHHHH
Confidence 2100 00000 0110 111222111 112335679999999999987 56889999999999999
Q ss_pred HHhcCCee-EEEEec
Q 016978 364 YMHGGDCL-RCVLKM 377 (379)
Q Consensus 364 ~~~~~~~~-Kvvi~~ 377 (379)
.+.+++.. |+||++
T Consensus 360 ~~~~~~~~gKvvi~~ 374 (375)
T 2vn8_A 360 KVERGHARGKTVINV 374 (375)
T ss_dssp HHHHCCCSSEEEEEC
T ss_pred HHHcCCCCCeEEEEe
Confidence 99988765 999986
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=365.62 Aligned_cols=316 Identities=19% Similarity=0.230 Sum_probs=252.3
Q ss_pred ccceeeeeecCCC--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 016978 8 ITCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 8 ~~~~a~~~~~~~~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
.+|||+++.+++. .++++++|.|+|+++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++| +++
T Consensus 3 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~~--v~~ 80 (330)
T 1tt7_A 3 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSN--DPR 80 (330)
T ss_dssp CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEECS--STT
T ss_pred CcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEcC--CCC
Confidence 4699999999873 3899999999999999999999999999999999886543 2579999999999999964 578
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||||++.+.. +|.. .+ |+|+||+.+|++.++++|
T Consensus 81 ~~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~iP 117 (330)
T 1tt7_A 81 FAEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLP 117 (330)
T ss_dssp CCTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECC
T ss_pred CCCCCEEEEcccc------------------------cCCC-CC------------------ccceeEEEecHHHeEECC
Confidence 9999999865310 1111 23 499999999999999999
Q ss_pred CCCCccccccccccchhhhhhhh--hccCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+++++++||++++++.|||.++. +++++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus 118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa 196 (330)
T 1tt7_A 118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA 196 (330)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC
T ss_pred CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence 99999999999988999998764 456789997 9999998 9999999999999999 79999999999999999999
Q ss_pred ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEe
Q 016978 241 TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKG 319 (379)
Q Consensus 241 ~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~ 319 (379)
++++++++ .+ .+.+++.+.+++|++|||+|+ ..+..++++++++ |+++.+|.... ...+++...+ .+++++.+
T Consensus 197 ~~v~~~~~--~~-~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g 270 (330)
T 1tt7_A 197 SEVISRED--VY-DGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLG 270 (330)
T ss_dssp SEEEEHHH--HC-SSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEE
T ss_pred cEEEECCC--ch-HHHHHHhhcCCccEEEECCcH-HHHHHHHHhhcCC-CEEEEEecCCC-CccCcchHHHHhcCeEEEE
Confidence 99987643 11 112333444489999999999 5799999999996 99999998643 2333433333 34788888
Q ss_pred eecCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 320 TAFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 320 ~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
+...... ..+.++++++++.+++++ ++++++|||+|+++|++.+.+++.. |+||++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 330 (330)
T 1tt7_A 271 IDSVYCPMDVRAAVWERMSSDLKPDQLL--TIVDREVSLEETPGALKDILQNRIQGRVIVKL 330 (330)
T ss_dssp CCSSSCCHHHHHHHHHHTTTTSCCSCST--TSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred EeccccCHHHHHHHHHHHHHHHhcCCcc--cccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 7432211 112345556666677765 5678999999999999999888765 999864
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=359.49 Aligned_cols=314 Identities=17% Similarity=0.237 Sum_probs=247.5
Q ss_pred cceeeeeecCCC--CeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCc
Q 016978 9 TCKAAVAWEPNK--PLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 9 ~~~a~~~~~~~~--~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
+|||+++.+++. .++++++|.|+|+++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++ +++++
T Consensus 3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~ 80 (328)
T 1xa0_A 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF 80 (328)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence 699999999884 3889999999999999999999999999999999886543 367999999999999996 46889
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||||++.+.. +|.. .+ |+|+||+.+|++.++++|+
T Consensus 81 ~vGdrV~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~~~~~P~ 117 (328)
T 1xa0_A 81 REGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPLPK 117 (328)
T ss_dssp CTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECCT
T ss_pred CCCCEEEEcccc------------------------CCCC-CC------------------ccceeEEEechHHeEECCC
Confidence 999999865310 1111 22 4999999999999999999
Q ss_pred CCCccccccccccchhhhhhhh--hccCCCCCC-EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVW--NTAKVEPGS-IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
++++++||++++++.|||.++. +++++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus 118 ~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~ 196 (328)
T 1xa0_A 118 GLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAK 196 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCS
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence 9999999999988999998764 456789997 9999998 9999999999999999 799999999999999999999
Q ss_pred eEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEee
Q 016978 242 EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGT 320 (379)
Q Consensus 242 ~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~ 320 (379)
+++++++ .+ .+.+++.+.+++|++|||+|+ ..+..++++++++ |+++.+|.... ...+++...+ .+++++.++
T Consensus 197 ~~i~~~~--~~-~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~-~~~~~~~~~~~~~~~~i~g~ 270 (328)
T 1xa0_A 197 EVLARED--VM-AERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTGG-AEVPTTVHPFILRGVSLLGI 270 (328)
T ss_dssp EEEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCSS-SCCCCCSHHHHHTTCEEEEC
T ss_pred EEEecCC--cH-HHHHHHhcCCcccEEEECCcH-HHHHHHHHhhccC-CEEEEEeecCC-CCCCCchhhhhhcCceEEEE
Confidence 9998865 22 334555554589999999998 5699999999996 99999998542 2333433333 347888876
Q ss_pred ecCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 321 AFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 321 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
...... ..+.++++++++.++ ++ + +.++|+|+|+++|++.+.+++.. |+||+++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 328 (328)
T 1xa0_A 271 DSVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQEISLAELPQALKRILRGELRGRTVVRLA 328 (328)
T ss_dssp CSSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred ecccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence 432111 112345555555556 44 3 46999999999999999888765 9999874
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=352.43 Aligned_cols=316 Identities=17% Similarity=0.253 Sum_probs=261.3
Q ss_pred CCccccceeeee-ecC---CCC----eEEEEeeCCCC-CCCeEEEEEeeeeccccccccccC----CCC-CCCCCccccc
Q 016978 4 EGQVITCKAAVA-WEP---NKP----LVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSG----KDP-EGLFPCILGH 69 (379)
Q Consensus 4 ~~~~~~~~a~~~-~~~---~~~----~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g----~~~-~~~~p~~~G~ 69 (379)
...|++|||+++ .++ |.| ++++++|.|+| +++||+|||.+++||++|+..+.+ .++ ...+|.++||
T Consensus 3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~ 82 (357)
T 2zb4_A 3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG 82 (357)
T ss_dssp ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence 456788999999 566 433 99999999999 999999999999999999887765 232 2367899999
Q ss_pred ceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCccee
Q 016978 70 EAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTF 149 (379)
Q Consensus 70 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (379)
|++|+|++ +++++|++||||++. + |+|
T Consensus 83 E~~G~V~~--~~v~~~~vGdrV~~~---------------------------------~------------------G~~ 109 (357)
T 2zb4_A 83 GGIGIIEE--SKHTNLTKGDFVTSF---------------------------------Y------------------WPW 109 (357)
T ss_dssp EEEEEEEE--ECSTTCCTTCEEEEE---------------------------------E------------------EES
T ss_pred cEEEEEEe--cCCCCCCCCCEEEec---------------------------------C------------------CCc
Confidence 99999999 889999999999743 1 399
Q ss_pred eeeEEecCcceEecCCCC-----CccccccccccchhhhhhhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCe
Q 016978 150 SQYTVVHDVSVAKIDPQA-----PLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASR 221 (379)
Q Consensus 150 ~~~~~v~~~~~~~iP~~~-----~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-g~vG~~a~~la~~~g~~~ 221 (379)
+||+++|++.++++|+++ +++ +++++++++|||+++.+.+++++| ++|||+|+ |++|++++|+|+.+|+.+
T Consensus 110 aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~ 188 (357)
T 2zb4_A 110 QTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR 188 (357)
T ss_dssp BSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred EEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence 999999999999999999 555 677888999999998888999999 99999998 999999999999999878
Q ss_pred EEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 222 VIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 222 vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
|+++++++++++.+++ +|+++++++++ .++.+.+++.+.+++|++||++|+ ..+..++++++++ |+++.+|....
T Consensus 189 Vi~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~ 264 (357)
T 2zb4_A 189 VVGICGTHEKCILLTSELGFDAAINYKK--DNVAEQLRESCPAGVDVYFDNVGG-NISDTVISQMNEN-SHIILCGQISQ 264 (357)
T ss_dssp EEEEESCHHHHHHHHHTSCCSEEEETTT--SCHHHHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEE-EEEEECCCGGG
T ss_pred EEEEeCCHHHHHHHHHHcCCceEEecCc--hHHHHHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccC-cEEEEECCccc
Confidence 9999999999999887 99999998876 678888888876689999999997 7799999999996 99999997542
Q ss_pred C-cccccCc-------cee-eeccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCC
Q 016978 301 G-QEISTRP-------FQL-VTGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGD 369 (379)
Q Consensus 301 ~-~~~~~~~-------~~~-~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~ 369 (379)
. ..+++.+ ..+ .+++++.++....+. ..++++++++++.+|++++. +..+|+|+++++|++.+.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~ 342 (357)
T 2zb4_A 265 YNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK--ETVINGLENMGAAFQSMMTGG 342 (357)
T ss_dssp TTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC--EEEEECGGGHHHHHHHHHTTC
T ss_pred cccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc--cceecCHHHHHHHHHHHHcCC
Confidence 1 1222221 122 237788877653321 23568899999999999976 446699999999999999887
Q ss_pred ee-EEEEecCC
Q 016978 370 CL-RCVLKMQD 379 (379)
Q Consensus 370 ~~-Kvvi~~~~ 379 (379)
.. |+||++++
T Consensus 343 ~~gKvvi~~~~ 353 (357)
T 2zb4_A 343 NIGKQIVCISE 353 (357)
T ss_dssp CSBEEEEECCC
T ss_pred CCceEEEEEec
Confidence 65 99999864
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=366.59 Aligned_cols=314 Identities=16% Similarity=0.165 Sum_probs=254.2
Q ss_pred ccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC--------------------------
Q 016978 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-------------------------- 59 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~-------------------------- 59 (379)
.+.+|||++.......++++++|.|+|+++||+|||.+++||++|++.+.|.++
T Consensus 4 ~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~ 83 (379)
T 3iup_A 4 SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS 83 (379)
T ss_dssp EEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred chhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence 356799988865444599999999999999999999999999999999888521
Q ss_pred ---CCCCCcccccceeEEEEEeCCCC-CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCcccccc
Q 016978 60 ---EGLFPCILGHEAAGIVESVGEGV-TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI 135 (379)
Q Consensus 60 ---~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~ 135 (379)
...+|.++|||++|+|+++|++| +++++||||++.+ +
T Consensus 84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------~------- 124 (379)
T 3iup_A 84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG--------------------------------G------- 124 (379)
T ss_dssp HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC--------------------------------S-------
T ss_pred cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC--------------------------------C-------
Confidence 23578999999999999999999 8999999998542 1
Q ss_pred CCCcccccCCcceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE--cCChHHHHHHHH
Q 016978 136 NGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEG 213 (379)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~--Gag~vG~~a~~l 213 (379)
|+|+||+.+|++.++++|+++++++||++++..+|||+++ +... ++|++|||+ |+|++|++++|+
T Consensus 125 -----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~ 191 (379)
T 3iup_A 125 -----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQI 191 (379)
T ss_dssp -----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHH
T ss_pred -----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHH
Confidence 3999999999999999999999999999999999999764 5555 899999999 459999999999
Q ss_pred HHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhc-----c
Q 016978 214 AKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCH-----K 287 (379)
Q Consensus 214 a~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~-----~ 287 (379)
|+.+|+ +|++++++++|+++++++|+++++++++ .++.+.+++.+++ ++|+||||+|++.+...++++++ +
T Consensus 192 a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~ 268 (379)
T 3iup_A 192 CLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS--PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKS 268 (379)
T ss_dssp HHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS--TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTT
T ss_pred HHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC--hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhcc
Confidence 999999 8999999999999999999999999987 7899999999988 99999999999777788888885 4
Q ss_pred C----------CceEEEEccCCCCcccccCcceeeeccEEEeeecCCCc---cccc----HHHHHHHHHcCCCCCCCcee
Q 016978 288 G----------WGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK---SRSQ----VPWLVDKYMKKEIKVDEYVT 350 (379)
Q Consensus 288 ~----------~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~----~~~~~~~~~~~~i~~~~~i~ 350 (379)
+ .|+++.+|... ....++. ..+.+++++.++++..+. ..++ ++++++++.+ .+ .++++
T Consensus 269 ~G~~~~~G~~~~g~iv~~G~~~-~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l--~~~i~ 343 (379)
T 3iup_A 269 AREYSRYGSTTHKQVYLYGGLD-TSPTEFN-RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TF--ASHYS 343 (379)
T ss_dssp CCSCCTTCCCSCEEEEECCCSE-EEEEEEC-CCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TT--CCCCS
T ss_pred ccceeecccccCceEEEecCCC-CCccccc-cccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cC--CCcce
Confidence 2 04455554432 1122222 122347888887664431 1222 3445555555 34 45688
Q ss_pred eeeecchH--HHHHHHHhcCCee-EEEEecCC
Q 016978 351 HNMTLGEI--NEAFRYMHGGDCL-RCVLKMQD 379 (379)
Q Consensus 351 ~~~~~~~i--~~A~~~~~~~~~~-Kvvi~~~~ 379 (379)
++|+|+|+ ++|++.+.+++.. |+||++++
T Consensus 344 ~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~ 375 (379)
T 3iup_A 344 KEISLAEVLDLDMIAVYNKRATGEKYLINPNK 375 (379)
T ss_dssp EEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred EEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence 99999999 9999999998776 99999863
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=337.86 Aligned_cols=294 Identities=20% Similarity=0.257 Sum_probs=243.4
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.+++++..++++|.|+|+++||+|||.+++||++|++.+.|.++. .++|.++|||++|+|+ |
T Consensus 1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G 69 (302)
T 1iz0_A 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G 69 (302)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence 799999999987667799999999999999999999999999999987654 2679999999999998 9
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|||++.+ .+ |+|+||+.+|++.++++|++++
T Consensus 70 drV~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~iP~~~~ 100 (302)
T 1iz0_A 70 RRYAALV-------------------------------PQ------------------GGLAERVAVPKGALLPLPEGLS 100 (302)
T ss_dssp EEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred cEEEEec-------------------------------CC------------------cceeeEEEEcHHHcEeCCCCCC
Confidence 9997542 12 3999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+++||++++++.|||+++.+.+ +++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++++++++
T Consensus 101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~ 178 (302)
T 1iz0_A 101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA 178 (302)
T ss_dssp HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999987777 999999999998 9999999999999999 999999999999999999999988764
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCccee-eeccEEEeeecCCC-
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQL-VTGRVWKGTAFGGF- 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~- 325 (379)
+. .++.+.+ +++|++|| +|+ ..+..++++++++ |+++.+|..... ...++...+ .+++++.++.+...
T Consensus 179 ~~-~~~~~~~-----~~~d~vid-~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (302)
T 1iz0_A 179 EV-PERAKAW-----GGLDLVLE-VRG-KEVEESLGLLAHG-GRLVYIGAAEGE-VAPIPPLRLMRRNLAVLGFWLTPLL 248 (302)
T ss_dssp GH-HHHHHHT-----TSEEEEEE-CSC-TTHHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHHHHT
T ss_pred cc-hhHHHHh-----cCceEEEE-CCH-HHHHHHHHhhccC-CEEEEEeCCCCC-CCCcCHHHHHhCCCeEEEEeccchh
Confidence 20 2333333 57999999 998 6799999999996 999999875432 123333333 33788888765321
Q ss_pred cccccHHHHHH---HHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 326 KSRSQVPWLVD---KYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 326 ~~~~~~~~~~~---~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
...++++++++ ++.+++++ ++++++||++|+++|++.+.+++.. |+|+++
T Consensus 249 ~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 302 (302)
T 1iz0_A 249 REGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL 302 (302)
T ss_dssp TCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred hhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 12357888999 99999986 5588999999999999999988765 999874
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=372.71 Aligned_cols=305 Identities=22% Similarity=0.288 Sum_probs=256.2
Q ss_pred ceeeeeecCCCC--eEEEEeeC--CCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCc
Q 016978 10 CKAAVAWEPNKP--LVIEDVQV--APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~--p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
...+.+..+|.+ +++.+.|. |+|+++||+|||.++|||++|++++.|.++ .|.++|||++|+|+++|++|++|
T Consensus 210 ~~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~ 286 (795)
T 3slk_A 210 GWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGL 286 (795)
T ss_dssp SCCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSS
T ss_pred eEEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcC
Confidence 345666777765 88888764 578999999999999999999999998764 35679999999999999999999
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||||+.. .+ |+|+||++++.+.++++|+
T Consensus 287 ~vGDrV~~~--------------------------------~~------------------G~~ae~~~v~~~~~~~iP~ 316 (795)
T 3slk_A 287 APGDRVMGM--------------------------------IP------------------KAFGPLAVADHRMVTRIPA 316 (795)
T ss_dssp CTTCEEEEC--------------------------------CS------------------SCSSSEEEEETTSEEECCT
T ss_pred CCCCEEEEE--------------------------------ec------------------CCCcCEEEeehHHEEECCC
Confidence 999999753 12 3999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV 244 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~ 244 (379)
++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.+++ |.+.++ +|+++++
T Consensus 317 ~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~ 393 (795)
T 3slk_A 317 GWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLA 393 (795)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEE
T ss_pred CCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhhee
Confidence 99999999999999999999999999999999999987 9999999999999999 899997655 666666 9999999
Q ss_pred CCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecC
Q 016978 245 NPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFG 323 (379)
Q Consensus 245 ~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (379)
++++ .++.+.+++.+++ |+|+|||+.|+ +.+..++++++++ |+++.+|.........+.. ...+.++.+..+.
T Consensus 394 ~~~~--~~~~~~i~~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~-Gr~v~iG~~~~~~~~~~~~--~~~~~~~~~~~l~ 467 (795)
T 3slk_A 394 SSRT--CDFEQQFLGATGGRGVDVVLNSLAG-EFADASLRMLPRG-GRFLELGKTDVRDPVEVAD--AHPGVSYQAFDTV 467 (795)
T ss_dssp CSSS--STHHHHHHHHSCSSCCSEEEECCCT-TTTHHHHTSCTTC-EEEEECCSTTCCCHHHHHH--HSSSEEEEECCGG
T ss_pred ecCC--hhHHHHHHHHcCCCCeEEEEECCCc-HHHHHHHHHhcCC-CEEEEeccccccCcccccc--cCCCCEEEEeecc
Confidence 9887 7899999999998 99999999998 6689999999996 9999999764332222211 1134455444332
Q ss_pred CC---cccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 324 GF---KSRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 324 ~~---~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
.. ...+.++++++++++|++++ ++.++||++|+++||+.+++++.. |+||+++
T Consensus 468 ~~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~ 524 (795)
T 3slk_A 468 EAGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLVLTMP 524 (795)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred ccCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence 11 12346888999999999885 478999999999999999999887 9999875
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=334.64 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=253.1
Q ss_pred CCCCCccccceeeeeecCCC-CeEEE--EeeCCC-CCCCeEEEEEeeeeccccccccccCCCCC----CCCCccccccee
Q 016978 1 MSTEGQVITCKAAVAWEPNK-PLVIE--DVQVAP-PQAGEVRIKILFTALCHTDAYTWSGKDPE----GLFPCILGHEAA 72 (379)
Q Consensus 1 m~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~p~-~~~~~VlV~v~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~ 72 (379)
|+++++...|+++++.+++. .++++ ++|.|. |+++||||||.++++|+.|. .+.|.... ..+|.++|||++
T Consensus 1 m~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~ 79 (345)
T 2j3h_A 1 MTATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQ 79 (345)
T ss_dssp CEEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCE
T ss_pred CCccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeee
Confidence 54444445566666666664 28888 889886 89999999999999888874 44454322 246889999999
Q ss_pred EEEEE--eCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceee
Q 016978 73 GIVES--VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFS 150 (379)
Q Consensus 73 G~V~~--vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~ 150 (379)
|++++ +|+++++|++||||++. |+|+
T Consensus 80 G~~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~a 107 (345)
T 2j3h_A 80 GYGVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWE 107 (345)
T ss_dssp EEEEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESB
T ss_pred cceEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCce
Confidence 99999 99999999999999631 3899
Q ss_pred eeEEecCcc--eEecCC---CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE
Q 016978 151 QYTVVHDVS--VAKIDP---QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG 224 (379)
Q Consensus 151 ~~~~v~~~~--~~~iP~---~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~ 224 (379)
||+.++++. ++++|+ +++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++
T Consensus 108 ey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~ 185 (345)
T 2j3h_A 108 EYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVG 185 (345)
T ss_dssp SEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEE
T ss_pred eEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEE
Confidence 999999877 999996 35555 67788899999999888889999999999998 9999999999999999 8999
Q ss_pred EcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC--
Q 016978 225 IDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG-- 301 (379)
Q Consensus 225 v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~-- 301 (379)
+++++++++.++ ++|+++++++.+ ..++.+.+++.+.+++|++||++|. ..+..++++++++ |+++.+|.....
T Consensus 186 ~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~ 262 (345)
T 2j3h_A 186 SAGSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGG-KMLDAVLVNMNMH-GRIAVCGMISQYNL 262 (345)
T ss_dssp EESSHHHHHHHHHTSCCSEEEETTS-CSCSHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGTTC
T ss_pred EeCCHHHHHHHHHHcCCceEEecCC-HHHHHHHHHHHhCCCCcEEEECCCH-HHHHHHHHHHhcC-CEEEEEcccccccc
Confidence 999999999998 799999988764 1356677777765589999999998 6799999999996 999999875421
Q ss_pred --cccccCcceee-eccEEEeeecCCCc--ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEE
Q 016978 302 --QEISTRPFQLV-TGRVWKGTAFGGFK--SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVL 375 (379)
Q Consensus 302 --~~~~~~~~~~~-~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi 375 (379)
....++...++ +++++.++....+. ..+.++++++++++|++++ ++.++|+|+++++|++.+++++.. |+||
T Consensus 263 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~--~~~~~~~l~~~~~A~~~~~~~~~~gKvvv 340 (345)
T 2j3h_A 263 ENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITY--VEDVADGLEKAPEALVGLFHGKNVGKQVV 340 (345)
T ss_dssp SSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCC--CEEEEESGGGSHHHHHHHHTTCCSSEEEE
T ss_pred CCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcC--cccccCCHHHHHHHHHHHHcCCCceEEEE
Confidence 12233333333 37788776554321 1234888999999999884 567789999999999999988876 9999
Q ss_pred ecCC
Q 016978 376 KMQD 379 (379)
Q Consensus 376 ~~~~ 379 (379)
++++
T Consensus 341 ~~~~ 344 (345)
T 2j3h_A 341 VVAR 344 (345)
T ss_dssp ESSC
T ss_pred EeCC
Confidence 9864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=324.55 Aligned_cols=307 Identities=18% Similarity=0.212 Sum_probs=248.8
Q ss_pred cccceeeeeecC--C----CCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCC
Q 016978 7 VITCKAAVAWEP--N----KPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 80 (379)
Q Consensus 7 ~~~~~a~~~~~~--~----~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 80 (379)
+++||++++.++ | +.++++++|.|+|+++||+|||.+++||+.|+.. . ...++|.++|||++|+|++.
T Consensus 5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv~~-- 78 (333)
T 1v3u_A 5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVVES-- 78 (333)
T ss_dssp CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEEEE--
T ss_pred cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEEec--
Confidence 468999999885 3 2399999999999999999999999999988732 1 12356789999999999995
Q ss_pred CCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcce
Q 016978 81 GVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSV 160 (379)
Q Consensus 81 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 160 (379)
++++|++||||++. |+|+||+.+|++.+
T Consensus 79 ~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~~ 106 (333)
T 1v3u_A 79 KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGL 106 (333)
T ss_dssp SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTTE
T ss_pred CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHHe
Confidence 57899999999742 28999999999999
Q ss_pred EecCCC----CCccc-cccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 016978 161 AKIDPQ----APLDK-VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (379)
Q Consensus 161 ~~iP~~----~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~ 234 (379)
+++|++ +++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.
T Consensus 107 ~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~ 185 (333)
T 1v3u_A 107 EKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAY 185 (333)
T ss_dssp EECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred EEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 999997 88887 47888899999999888889999999999998 9999999999999999 99999999999999
Q ss_pred HHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCc----ccc-cCcc
Q 016978 235 AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ----EIS-TRPF 309 (379)
Q Consensus 235 ~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~----~~~-~~~~ 309 (379)
++++|++.++++.+ ..++.+.+.+.+.+++|++||++|. ..+..++++++++ |+++.+|...... ... .+..
T Consensus 186 ~~~~g~~~~~d~~~-~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~ 262 (333)
T 1v3u_A 186 LKQIGFDAAFNYKT-VNSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPE 262 (333)
T ss_dssp HHHTTCSEEEETTS-CSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCCC-------CCBCCCHH
T ss_pred HHhcCCcEEEecCC-HHHHHHHHHHHhCCCCeEEEECCCh-HHHHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcCHH
Confidence 99999998888754 1467777877776689999999998 5689999999996 9999999754211 111 1222
Q ss_pred ee-eeccEEEeeecCCCc---ccccHHHHHHHHHcCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEec
Q 016978 310 QL-VTGRVWKGTAFGGFK---SRSQVPWLVDKYMKKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKM 377 (379)
Q Consensus 310 ~~-~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~ 377 (379)
.+ .+++++.++....+. ..++++++++++++|++++.. ...++|+|+++|++.+.+++.. |+||++
T Consensus 263 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 333 (333)
T 1v3u_A 263 SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE--HVTKGFENMPAAFIEMLNGANLGKAVVTA 333 (333)
T ss_dssp HHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE--EEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred HHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc--ccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 22 237888887654321 134678899999999999764 3557999999999999988765 999874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=316.46 Aligned_cols=291 Identities=16% Similarity=0.226 Sum_probs=234.9
Q ss_pred eEEEEeeCCC-CC--CCeEEEEEeeeeccccccccccCCCCCC-------CCCcccccceeEEEEEeCCCCCCcCCCCEE
Q 016978 22 LVIEDVQVAP-PQ--AGEVRIKILFTALCHTDAYTWSGKDPEG-------LFPCILGHEAAGIVESVGEGVTEVQPGDHV 91 (379)
Q Consensus 22 ~~~~~~~~p~-~~--~~~VlV~v~~~~i~~~D~~~~~g~~~~~-------~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V 91 (379)
+.+.+.+... +. +++|+|||.++++|+.|+++..|..+.. ..|.++|+|++|+|. +||+|
T Consensus 1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A 1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence 6666555433 33 7899999999999999999998876432 245689999999873 79999
Q ss_pred eecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCCccc
Q 016978 92 IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDK 171 (379)
Q Consensus 92 ~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~ 171 (379)
+... .+ |+|++|+++|++.++++|+++++++
T Consensus 1614 ~g~~-------------------------------~~------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A 1614 MGMV-------------------------------PA------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp EEEC-------------------------------SS------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred EEee-------------------------------cC------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence 7432 12 3999999999999999999999999
Q ss_pred cccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCC
Q 016978 172 VCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNP 246 (379)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~ 246 (379)
||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|++++++ +|+++++++
T Consensus 1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~ 1723 (2512)
T 2vz8_A 1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANS 1723 (2512)
T ss_dssp HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEES
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecC
Confidence 99999999999999988999999999999977 9999999999999999 89999999999999986 789999998
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
++ .++.+.+++.+++ |+|+||||.++ +.+..++++++++ |+++.+|..............+.+++++.++.....
T Consensus 1724 ~~--~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 1799 (2512)
T 2vz8_A 1724 RD--TSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQH-GRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSL 1799 (2512)
T ss_dssp SS--SHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEE-EEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGT
T ss_pred CC--HHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCC-cEEEEeecccccccCcccccccccCCcEEEeeHHHH
Confidence 77 7899999999988 99999999975 7799999999996 999999864211111111222334777777665432
Q ss_pred c--ccccHHHHHHHHH----cCCCCCCCceeeeeecchHHHHHHHHhcCCee-EEEEecC
Q 016978 326 K--SRSQVPWLVDKYM----KKEIKVDEYVTHNMTLGEINEAFRYMHGGDCL-RCVLKMQ 378 (379)
Q Consensus 326 ~--~~~~~~~~~~~~~----~~~i~~~~~i~~~~~~~~i~~A~~~~~~~~~~-Kvvi~~~ 378 (379)
. ....+.++++++. +++++ ++++++||++++++|++.+++++.. |+||+++
T Consensus 1800 ~~~~~~~~~~~l~~l~~~~~~g~l~--p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A 1800 FEEGGATWQEVSELLKAGIQEGVVQ--PLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTTCSC--CCCEEEEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCcC--CCcceEecHHHHHHHHHhhhccCccceEEEECC
Confidence 1 2234555555554 56665 4578999999999999999998876 9999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=177.65 Aligned_cols=184 Identities=18% Similarity=0.252 Sum_probs=137.0
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
+.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus 2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS 80 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 5689999999999999999999999999878889999999999996 9999999999999999 8999999999999999
Q ss_pred hcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeecc
Q 016978 237 NFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGR 315 (379)
Q Consensus 237 ~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 315 (379)
++|++.+++..+ .++.+.+.+.+.+ ++|++||++|. ..+..++++++++ |+++.+|.........++...+.+++
T Consensus 81 ~~g~~~~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~ 156 (198)
T 1pqw_A 81 RLGVEYVGDSRS--VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSA 156 (198)
T ss_dssp TTCCSEEEETTC--STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTC
T ss_pred HcCCCEEeeCCc--HHHHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhccC-CEEEEEcCCCCcCcCcCChhHhcCCc
Confidence 999998888766 5677788777766 89999999987 6799999999996 99999987542111112222222356
Q ss_pred EEEeeec------CCCcccccHHHHHHHHHcCCCCCC
Q 016978 316 VWKGTAF------GGFKSRSQVPWLVDKYMKKEIKVD 346 (379)
Q Consensus 316 ~i~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~ 346 (379)
++.+... ......+.++++++++++|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~ 193 (198)
T 1pqw_A 157 SFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL 193 (198)
T ss_dssp EEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred EEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence 6654432 111113568899999999999865
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=109.44 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=109.6
Q ss_pred cCCCCEEeecC-------CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC
Q 016978 85 VQPGDHVIPCY-------QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD 157 (379)
Q Consensus 85 ~~~Gd~V~~~~-------~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 157 (379)
+++||+|++.+ ...||.|.+|..|..+.|..... .+| ...+++.++.
T Consensus 4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~--~~G------------------------~~~~~~~~~~ 57 (248)
T 2yvl_A 4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK--PEG------------------------VKINGFEVYR 57 (248)
T ss_dssp CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC--CTT------------------------EEETTEEEEC
T ss_pred CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC--CCC------------------------CEEEEEEEeC
Confidence 89999999998 67888889998888888874321 111 2222222222
Q ss_pred cceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 158 VSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 158 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
.....+++......++.+. ....+ .+.....+.++++||.+|+| .|..+..+++. +. +|++++.+++..+.+++
T Consensus 58 p~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~ 131 (248)
T 2yvl_A 58 PTLEEIILLGFERKTQIIY-PKDSF--YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQK 131 (248)
T ss_dssp CCHHHHHHHTSCCSSCCCC-HHHHH--HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHhcCcCCCCccc-chhHH--HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence 2222222111111111111 11222 24566778899999999998 69999999998 66 99999999998888775
Q ss_pred c----CC--ceEeCCCCCCchHHHHHHHhc-C-CCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEcc
Q 016978 238 F----GV--TEFVNPKDHDKPIQQVLVDLT-D-GGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 238 l----g~--~~v~~~~~~~~~~~~~i~~~~-~-~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. +. ...+...+ + .+.. . +++|+|+...+.+ ..+..+.+.|+++ |+++....
T Consensus 132 ~~~~~~~~~~~~~~~~d----~----~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 191 (248)
T 2yvl_A 132 NLKKFNLGKNVKFFNVD----F----KDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP 191 (248)
T ss_dssp HHHHTTCCTTEEEECSC----T----TTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred HHHHcCCCCcEEEEEcC----h----hhcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 3 33 11111111 1 1112 2 3799999877765 7789999999997 99987754
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-12 Score=119.13 Aligned_cols=181 Identities=16% Similarity=0.120 Sum_probs=127.5
Q ss_pred ccccceeEEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCC
Q 016978 66 ILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMG 145 (379)
Q Consensus 66 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 145 (379)
..|++.++.|..+|++++++.+|+.+++-+... + +- ....
T Consensus 76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------~----------------~~------------------~~~~ 115 (404)
T 1gpj_A 76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------A----------------YD------------------RAAR 115 (404)
T ss_dssp EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------H----------------HH------------------HHHH
T ss_pred ecCchHhhhheeeccCCCCCcCCcchhHHHHHH------H----------------HH------------------HHHH
Confidence 478999999999999999999999874211000 0 00 0001
Q ss_pred cceeeeeEEecCcceEecCCCCCccccccccccchhhhhhhhhcc---CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeE
Q 016978 146 TSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA---KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRV 222 (379)
Q Consensus 146 ~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~v 222 (379)
.|++++|+..+...++++|++++.+.++.. .+..++|.++.... .-.+|++|+|+|+|.+|.++++.++..|+++|
T Consensus 116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V 194 (404)
T 1gpj_A 116 LGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAV 194 (404)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEE
T ss_pred cCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEE
Confidence 136788888888899999999887776653 36667777652211 12589999999999999999999999998889
Q ss_pred EEEcCChhHH-HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHH--HHHHH--h--ccCCceEEEE
Q 016978 223 IGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMR--AALEC--C--HKGWGTSVIV 295 (379)
Q Consensus 223 i~v~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~--~~~~~--l--~~~~G~iv~~ 295 (379)
++++++.++. ++++++|++ ++++ .++.+.+ .++|+|++|++.+..+. ..+.. + +++ +.++.+
T Consensus 195 ~v~~r~~~ra~~la~~~g~~-~~~~----~~l~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~v 263 (404)
T 1gpj_A 195 LVANRTYERAVELARDLGGE-AVRF----DELVDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILII 263 (404)
T ss_dssp EEECSSHHHHHHHHHHHTCE-ECCG----GGHHHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEEE
T ss_pred EEEeCCHHHHHHHHHHcCCc-eecH----HhHHHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEEE
Confidence 9999999886 788889875 3333 2333333 25999999998744321 34444 3 554 777777
Q ss_pred ccC
Q 016978 296 GVA 298 (379)
Q Consensus 296 g~~ 298 (379)
+..
T Consensus 264 dia 266 (404)
T 1gpj_A 264 DIA 266 (404)
T ss_dssp ECC
T ss_pred Ecc
Confidence 664
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=94.78 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=95.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+++|+|+|+|++|++++++++.+|+ +|++++++++|++.++++++.. +++.+. .++.+.+. ++|+||+|+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~DvVI~~~ 238 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS--AEIETAVA-----EADLLIGAV 238 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH--HHHHHHHH-----TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH--HHHHHHHc-----CCCEEEECC
Confidence 4999999999999999999999999 9999999999999998877654 233322 33433332 599999999
Q ss_pred CCHHH------HHHHHHHhccCCceEEEEccCCCCc-----ccccCcceeee-ccEEEeeecCCCc---------ccccH
Q 016978 273 GNVSV------MRAALECCHKGWGTSVIVGVAASGQ-----EISTRPFQLVT-GRVWKGTAFGGFK---------SRSQV 331 (379)
Q Consensus 273 g~~~~------~~~~~~~l~~~~G~iv~~g~~~~~~-----~~~~~~~~~~~-~~~i~~~~~~~~~---------~~~~~ 331 (379)
+.+.. ....+..++++ |+++.++....+. ..+++...+.. ++++.+....... ....+
T Consensus 239 ~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~ 317 (361)
T 1pjc_A 239 LVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTL 317 (361)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHH
T ss_pred CcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHH
Confidence 87442 56778889996 9999998754321 22333333333 6666654321110 12345
Q ss_pred HHHHHHHHcCC
Q 016978 332 PWLVDKYMKKE 342 (379)
Q Consensus 332 ~~~~~~~~~~~ 342 (379)
+.+++++.+|.
T Consensus 318 ~~l~~l~~~G~ 328 (361)
T 1pjc_A 318 PYVVKLANQGL 328 (361)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHhCCc
Confidence 67778887773
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=88.36 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=75.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|++|+|+|+|.+|+.++++++.+|+ +|+++++++++++.+++ +|++...+... ..++.+.+. ++|+|++|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~-~~~l~~~l~-----~aDvVi~~~ 239 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS-AYELEGAVK-----RADLVIGAV 239 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC-HHHHHHHHc-----CCCEEEECC
Confidence 58999999999999999999999999 99999999999888876 67753222211 123333332 589999998
Q ss_pred CCHHH------HHHHHHHhccCCceEEEEccC
Q 016978 273 GNVSV------MRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 273 g~~~~------~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+.. ....+..++++ +.++.++..
T Consensus 240 ~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~ 270 (377)
T 2vhw_A 240 LVPGAKAPKLVSNSLVAHMKPG-AVLVDIAID 270 (377)
T ss_dssp CCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGG
T ss_pred CcCCCCCcceecHHHHhcCCCC-cEEEEEecC
Confidence 76543 57788899996 999999854
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=89.95 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCC-------------Cc----hHHH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDH-------------DK----PIQQ 255 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~-------------~~----~~~~ 255 (379)
++++|+|+|+|.+|++++++|+.+|+ +|+++++++++++.++++|++.+ ++..+. +. ...+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 68999999999999999999999999 79999999999999989998754 222110 00 0122
Q ss_pred HHHHhcCCCccEEEEcC---CCH--HHH-HHHHHHhccCCceEEEEccCCCCc-ccccCcceeee-ccEEEeeecCCCcc
Q 016978 256 VLVDLTDGGVDYSFECI---GNV--SVM-RAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVT-GRVWKGTAFGGFKS 327 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~---g~~--~~~-~~~~~~l~~~~G~iv~~g~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~ 327 (379)
.+.+... ++|+||+|+ |.+ .++ ...++.++++ +.++.++....+. ....+...+.. ++++.++... +.
T Consensus 250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~--p~ 325 (384)
T 1l7d_A 250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNV--PS 325 (384)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSG--GG
T ss_pred HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCC--cc
Confidence 2444333 699999999 532 233 6788899996 9999998643221 11112222323 7777775432 11
Q ss_pred cccHHHHHHHHHcCCCC
Q 016978 328 RSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~i~ 344 (379)
.......+++.++.+.
T Consensus 326 -~~~~~a~~l~~~~~~~ 341 (384)
T 1l7d_A 326 -RVAADASPLFAKNLLN 341 (384)
T ss_dssp -GGHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhHHH
Confidence 2244477777776555
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.3e-07 Score=84.57 Aligned_cols=141 Identities=22% Similarity=0.234 Sum_probs=87.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|.+...+..+ ..++.+.+. ++|+|++|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~~~-----~~DvVi~~~ 237 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT-EANIKKSVQ-----HADLLIGAV 237 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC-HHHHHHHHH-----HCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC-HHHHHHHHh-----CCCEEEECC
Confidence 46999999999999999999999999 99999999999887766 77754333222 133333332 589999999
Q ss_pred CCHHH------HHHHHHHhccCCceEEEEccCCCCc-----ccccCcceeee-ccEEEeeecCCC---------cccccH
Q 016978 273 GNVSV------MRAALECCHKGWGTSVIVGVAASGQ-----EISTRPFQLVT-GRVWKGTAFGGF---------KSRSQV 331 (379)
Q Consensus 273 g~~~~------~~~~~~~l~~~~G~iv~~g~~~~~~-----~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~~ 331 (379)
+.+.. ....+..++++ |.++.++....+. +.+++...+.. ++.+.+...-.. .....+
T Consensus 238 g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~ 316 (369)
T 2eez_A 238 LVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTL 316 (369)
T ss_dssp C-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHH
T ss_pred CCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHH
Confidence 87542 57788889996 9999998754321 11222222222 666555431110 012345
Q ss_pred HHHHHHHHcCC
Q 016978 332 PWLVDKYMKKE 342 (379)
Q Consensus 332 ~~~~~~~~~~~ 342 (379)
+.+++++.++.
T Consensus 317 ~~l~~l~~~g~ 327 (369)
T 2eez_A 317 PYVLKLAEKGL 327 (369)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhcCh
Confidence 67777777663
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=82.20 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCC---C--------CchH----HHHH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKD---H--------DKPI----QQVL 257 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~---~--------~~~~----~~~i 257 (379)
++++|+|+|+|.+|+.++++|+.+|+ +|++++++.++++.++++|++.+. +..+ . ..++ .+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 58999999999999999999999999 899999999999999999987542 1100 0 0111 1123
Q ss_pred HHhcCCCccEEEEcCCCH-----HHH-HHHHHHhccCCceEEEEccCCCCcccccCc-ce--ee-eccEEEeee
Q 016978 258 VDLTDGGVDYSFECIGNV-----SVM-RAALECCHKGWGTSVIVGVAASGQEISTRP-FQ--LV-TGRVWKGTA 321 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~~-----~~~-~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~-~~--~~-~~~~i~~~~ 321 (379)
.+... ++|+||++++.+ .++ ...++.++++ +.++.++.... ..++... .. +. .++++.++.
T Consensus 250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~G-g~v~~~~~~~p~~~~~gv~i~g~~ 320 (401)
T 1x13_A 250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNG-GNCEYTVPGEIFTTENGVKVIGYT 320 (401)
T ss_dssp HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT-CSBTTCCTTSEEECTTSCEEECCS
T ss_pred HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCC-CCcCcccCCCceEEECCEEEEeeC
Confidence 33322 589999995321 323 5788899996 99999986422 2233321 11 22 377777654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.8e-07 Score=86.71 Aligned_cols=103 Identities=24% Similarity=0.344 Sum_probs=82.2
Q ss_pred hhhhhhhhhccC--CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHH
Q 016978 180 PTGLGAVWNTAK--VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVL 257 (379)
Q Consensus 180 ~ta~~~l~~~~~--~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i 257 (379)
.++|+++ .+.. ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++ +++ +.+.+
T Consensus 258 ~s~~~g~-~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~-------l~e~l 327 (494)
T 3ce6_A 258 HSLIDGI-NRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT-------VEEAI 327 (494)
T ss_dssp HHHHHHH-HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC-------HHHHG
T ss_pred hhhhHHH-HhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec-------HHHHH
Confidence 3445553 3333 6789999999999999999999999999 999999999999899999985 321 22221
Q ss_pred HHhcCCCccEEEEcCCCHHHHH-HHHHHhccCCceEEEEccC
Q 016978 258 VDLTDGGVDYSFECIGNVSVMR-AALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~iv~~g~~ 298 (379)
.++|+|++++++...+. ..+..++++ ++++.+|..
T Consensus 328 -----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~ 363 (494)
T 3ce6_A 328 -----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHF 363 (494)
T ss_dssp -----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSS
T ss_pred -----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence 26899999999877665 788999996 999999874
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-06 Score=75.46 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=73.1
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc----CC-ceE-eCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF----GV-TEF-VNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l----g~-~~v-~~~~~~~~~~~~~i~ 258 (379)
+.....+.++++||-+|+|. |.+++.+++..+ ..+|++++.+++..+.+++. +. +.+ +...+ +.+.
T Consensus 104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~-- 176 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD----ISEG-- 176 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC----GGGC--
T ss_pred HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC----HHHc--
Confidence 45666789999999999976 888999999864 34999999999888877653 43 111 11111 1111
Q ss_pred HhcCCCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+..+.+|+|+-....+ ..+..+.+.|+++ |+++.+..
T Consensus 177 -~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 214 (277)
T 1o54_A 177 -FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP 214 (277)
T ss_dssp -CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred -ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 2223799998765554 6789999999997 99987743
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=75.12 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC-C-----CCC----c----hHHHHHHH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP-K-----DHD----K----PIQQVLVD 259 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~-~-----~~~----~----~~~~~i~~ 259 (379)
++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++.+-.. + ... . ...+.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 67999999999999999999999999 89999999999999999998643110 0 000 0 01122323
Q ss_pred hcCCCccEEEEcCCCH-----H-HHHHHHHHhccCCceEEEEccCCC
Q 016978 260 LTDGGVDYSFECIGNV-----S-VMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~-----~-~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
.. ..+|+||.++..+ . .-...++.++++ +.+|.++....
T Consensus 262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G 306 (381)
T 3p2y_A 262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG 306 (381)
T ss_dssp HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence 22 2699999986322 1 237888899996 99999986543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=74.51 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=82.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC-------------CCC-CCchH----HH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN-------------PKD-HDKPI----QQ 255 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~-------------~~~-~~~~~----~~ 255 (379)
++.+|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|++.+.. +.. -+..+ .+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 67999999999999999999999999 8999999999999999999863221 000 00111 11
Q ss_pred HHHHhcCCCccEEEEcCCCH-----H-HHHHHHHHhccCCceEEEEccCCCCcccccC-c-ceee-eccEEEeee
Q 016978 256 VLVDLTDGGVDYSFECIGNV-----S-VMRAALECCHKGWGTSVIVGVAASGQEISTR-P-FQLV-TGRVWKGTA 321 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~~-----~-~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~-~-~~~~-~~~~i~~~~ 321 (379)
.+.+.. .++|+||.|+..+ . .-+..++.++++ +.+|.++....+ ..... + ..+. +++.+.+..
T Consensus 268 ~l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG-~~e~t~~~~~~~~~GV~~~gv~ 339 (405)
T 4dio_A 268 LVAEHI-AKQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGG-NIEGAEAGKVTEVGGVRIVGHL 339 (405)
T ss_dssp HHHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTC-SBTTCCTTEEEEETTEEEEECS
T ss_pred HHHHHh-cCCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCC-CccccCCCCeEEECCEEEEEeC
Confidence 222222 1699999985422 1 236888899996 999999763322 22221 1 1122 267766654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=59.31 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
++.+|+|+|+|.+|..+++.+...| . +|+++++++++.+.+.+.+...+. +..+ . +.+.+.. .++|+||++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~-~~~d~vi~~ 76 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD--E---AGLAKAL-GGFDAVISA 76 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC--H---HHHHHHT-TTCSEEEEC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC--H---HHHHHHH-cCCCEEEEC
Confidence 3578999999999999999999999 6 899999999998888776765432 2222 1 2333332 269999999
Q ss_pred CCCHHHHHHHHHHhccCCceEE
Q 016978 272 IGNVSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv 293 (379)
++.....+.+..+...+ -.++
T Consensus 77 ~~~~~~~~~~~~~~~~g-~~~~ 97 (118)
T 3ic5_A 77 APFFLTPIIAKAAKAAG-AHYF 97 (118)
T ss_dssp SCGGGHHHHHHHHHHTT-CEEE
T ss_pred CCchhhHHHHHHHHHhC-CCEE
Confidence 98755444444444443 4444
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=64.34 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
..-.++++|+|+|+|.+|..+++.++..|+ +|+++++++++.+.++ +.|...+. .+. .+ .+.+.+....++|+|
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~-~d~--~~-~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVV-GDA--AE-FETLKECGMEKADMV 88 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEE-SCT--TS-HHHHHTTTGGGCSEE
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEE-ecC--CC-HHHHHHcCcccCCEE
Confidence 345678999999999999999999999999 8999999999888777 67765432 221 11 122333211279999
Q ss_pred EEcCCCHHHHHHHHHHhcc
Q 016978 269 FECIGNVSVMRAALECCHK 287 (379)
Q Consensus 269 id~~g~~~~~~~~~~~l~~ 287 (379)
|.+++.......+...++.
T Consensus 89 i~~~~~~~~~~~~~~~~~~ 107 (155)
T 2g1u_A 89 FAFTNDDSTNFFISMNARY 107 (155)
T ss_dssp EECSSCHHHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHH
Confidence 9999997655555555554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=71.69 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce--EeCCCCCCchHHHHHHHhc
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE--FVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~--v~~~~~~~~~~~~~i~~~~ 261 (379)
..+++++|++||.+|+|+.+..++.+|+..|+ +|++++.+++..+.+++. |.+. ++..+. . ++.
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa--~-------~l~ 185 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE--T-------VID 185 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG--G-------GGG
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch--h-------hCC
Confidence 34678999999999999888888888888898 999999999988888753 5422 222211 1 122
Q ss_pred CCCccEEEEcCCCH---HHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGNV---SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.||+|+.....+ ..+..+.+.|+++ |+++....
T Consensus 186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~ 223 (298)
T 3fpf_A 186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY 223 (298)
T ss_dssp GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence 35899999765543 6789999999997 99987653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.3e-06 Score=73.08 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++++||.+|+|. |..+..+++.. |. +|++++.+++..+.+++.+... ++..+. .++ ....+.+|+|+.
T Consensus 84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~--~~~-----~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRL-----PFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT--TSC-----SBCTTCEEEEEE
T ss_pred CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch--hhC-----CCCCCceeEEEE
Confidence 6789999999987 99999999987 66 9999999999999998876432 222221 111 122347999996
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. .....+..+.+.|+++ |+++....
T Consensus 155 ~-~~~~~l~~~~~~L~pg-G~l~~~~~ 179 (269)
T 1p91_A 155 I-YAPCKAEELARVVKPG-GWVITATP 179 (269)
T ss_dssp E-SCCCCHHHHHHHEEEE-EEEEEEEE
T ss_pred e-CChhhHHHHHHhcCCC-cEEEEEEc
Confidence 4 3346789999999997 99987753
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5e-05 Score=71.35 Aligned_cols=93 Identities=28% Similarity=0.353 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +. ++.+.+ ...|+++.|
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~-------~Leeal-----~~ADIVi~a 282 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV-------KLNEVI-----RQVDIVITC 282 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CHHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec-------cHHHHH-----hcCCEEEEC
Confidence 4589999999999999999999999999 899999988877767767753 21 222222 258999999
Q ss_pred CCCHHHHH-HHHHHhccCCceEEEEccCC
Q 016978 272 IGNVSVMR-AALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 272 ~g~~~~~~-~~~~~l~~~~G~iv~~g~~~ 299 (379)
.|+...+. ..+..++++ +.++.+|-..
T Consensus 283 tgt~~lI~~e~l~~MK~g-ailINvgrg~ 310 (435)
T 3gvp_A 283 TGNKNVVTREHLDRMKNS-CIVCNMGHSN 310 (435)
T ss_dssp SSCSCSBCHHHHHHSCTT-EEEEECSSTT
T ss_pred CCCcccCCHHHHHhcCCC-cEEEEecCCC
Confidence 88766665 888999996 9999887643
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.2e-06 Score=65.26 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=72.8
Q ss_pred chhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcCCceEeCCCCCCchHHHHH
Q 016978 179 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVL 257 (379)
Q Consensus 179 ~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg~~~v~~~~~~~~~~~~~i 257 (379)
++.+++++ +......+++|+|+|+|.+|...++.++..|+ +|+++++++++.+ ++++++.+. .... ++.+.+
T Consensus 6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~-~~~~----~~~~~~ 78 (144)
T 3oj0_A 6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEY-VLIN----DIDSLI 78 (144)
T ss_dssp CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEE-EECS----CHHHHH
T ss_pred ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCce-Eeec----CHHHHh
Confidence 44556654 33344459999999999999999999888999 5999999988865 466777543 2222 233333
Q ss_pred HHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 258 VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
. ++|+|+.|++....+.. ...++++ +.++.++.+
T Consensus 79 ~-----~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p 112 (144)
T 3oj0_A 79 K-----NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNP 112 (144)
T ss_dssp H-----TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSS
T ss_pred c-----CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCC
Confidence 2 58999999987542222 2567775 888887764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=58.66 Aligned_cols=87 Identities=18% Similarity=0.304 Sum_probs=64.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhc-CCCccEEEEc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLT-DGGVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~-~~g~d~vid~ 271 (379)
+++|+|+|.|.+|..+++.++.. |+ +|+++++++++.+.+++.|...+. +..+ . +.+.+.+ -.++|+|+.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~--~---~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD--P---DFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC--H---HHHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC--H---HHHHhccCCCCCCEEEEe
Confidence 67899999999999999999998 99 899999999999999888876544 3222 2 2333431 2379999999
Q ss_pred CCCHHHHHHHHHHhcc
Q 016978 272 IGNVSVMRAALECCHK 287 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~ 287 (379)
+++......+...++.
T Consensus 113 ~~~~~~~~~~~~~~~~ 128 (183)
T 3c85_A 113 MPHHQGNQTALEQLQR 128 (183)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 9986544444444444
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.2e-05 Score=74.23 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=68.4
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCC---------------c--eEeCCC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGV---------------T--EFVNPK 247 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~---------------~--~v~~~~ 247 (379)
+.....+.+|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++... + .++..+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 34555788999999999976 8888888988774 499999999988877765211 1 122221
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCC-HHHHHHHHHHhccCCceEEEEcc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
- .+. ...+..+.+|+|+-.... ...+..+.+.|+++ |+++.+..
T Consensus 176 ~--~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 220 (336)
T 2b25_A 176 I--SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV 220 (336)
T ss_dssp T--TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred h--HHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence 1 110 011222369988854444 34588999999997 99987643
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=66.04 Aligned_cols=94 Identities=26% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
--+|++|+|+|+|.+|..+++.++.+|+ +|++.+++.++.+.++++|+.. ++. .++.+.+ ...|+|+.+
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~----~~l~~~l-----~~aDvVi~~ 220 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI----SKAAQEL-----RDVDVCINT 220 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG----GGHHHHT-----TTCSEEEEC
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh----hhHHHHh-----cCCCEEEEC
Confidence 3478999999999999999999999999 9999999988877777788753 221 1222221 258999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++....-...+..++++ +.++.++.
T Consensus 221 ~p~~~i~~~~l~~mk~~-~~lin~ar 245 (293)
T 3d4o_A 221 IPALVVTANVLAEMPSH-TFVIDLAS 245 (293)
T ss_dssp CSSCCBCHHHHHHSCTT-CEEEECSS
T ss_pred CChHHhCHHHHHhcCCC-CEEEEecC
Confidence 87632224567788996 89988875
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=67.97 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +. ++.+.++ ..|+|+.+
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv-------~LeElL~-----~ADIVv~a 309 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV-------TLDDAAS-----TADIVVTT 309 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC-------CHHHHGG-----GCSEEEEC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec-------cHHHHHh-----hCCEEEEC
Confidence 4689999999999999999999999999 999998888776666666653 22 1222221 58999999
Q ss_pred CCCHHHH-HHHHHHhccCCceEEEEccCC
Q 016978 272 IGNVSVM-RAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 272 ~g~~~~~-~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.|+...+ ...+..++++ +.++.+|-..
T Consensus 310 tgt~~lI~~e~l~~MK~G-AILINvGRgd 337 (464)
T 3n58_A 310 TGNKDVITIDHMRKMKDM-CIVGNIGHFD 337 (464)
T ss_dssp CSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred CCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence 9876655 6788899996 8888887543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00034 Score=61.50 Aligned_cols=102 Identities=23% Similarity=0.268 Sum_probs=73.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc----CCce--EeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF----GVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l----g~~~--v~~~~~~~~~~~~~i~ 258 (379)
+.....+.++++||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++. |... .+...+ +. .
T Consensus 85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d----~~---~ 156 (255)
T 3mb5_A 85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD----IY---E 156 (255)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC----GG---G
T ss_pred HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc----hh---h
Confidence 45667789999999999975 888999999864 34999999999888777653 4332 111211 11 1
Q ss_pred HhcCCCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g 296 (379)
....+.+|+|+-....+ ..+..+.+.|+++ |+++.+.
T Consensus 157 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 194 (255)
T 3mb5_A 157 GIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYT 194 (255)
T ss_dssp CCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred ccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence 12223799999766553 4789999999997 9998774
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00077 Score=53.52 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=66.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.++|+|+|.|.+|..+++.++..|. +|++++.++++.+.+++.|...+..... +.+ .+++..-..+|.++-+++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~-~~~---~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAA-NEE---IMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTT-SHH---HHHHTTGGGCSEEEECCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCC-CHH---HHHhcCcccCCEEEEECCC
Confidence 5789999999999999999999999 8999999999999999888865442211 122 2333222279999999998
Q ss_pred HHHHH---HHHHHhccCCceEEE
Q 016978 275 VSVMR---AALECCHKGWGTSVI 294 (379)
Q Consensus 275 ~~~~~---~~~~~l~~~~G~iv~ 294 (379)
...-. ..++.+.+. .+++.
T Consensus 82 ~~~n~~~~~~a~~~~~~-~~iia 103 (140)
T 3fwz_A 82 GYEAGEIVASARAKNPD-IEIIA 103 (140)
T ss_dssp HHHHHHHHHHHHHHCSS-SEEEE
T ss_pred hHHHHHHHHHHHHHCCC-CeEEE
Confidence 54222 334445554 55543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=9.7e-05 Score=70.65 Aligned_cols=91 Identities=26% Similarity=0.326 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|++|+|+|+|++|...++.++..|+ +|+++++++.+.+.+...|++ +.+..+ . ...+|+++++.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~lee-----------~-~~~aDvVi~at 328 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLED-----------V-VSEADIFVTTT 328 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGGG-----------T-TTTCSEEEECS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHHH-----------H-HHhcCEEEeCC
Confidence 479999999999999999999999999 999999999888777777753 221111 1 12689999999
Q ss_pred CCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 273 GNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 273 g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
|..+.+ ...+..++++ +.++..|..
T Consensus 329 G~~~vl~~e~l~~mk~g-aiVvNaG~~ 354 (488)
T 3ond_A 329 GNKDIIMLDHMKKMKNN-AIVCNIGHF 354 (488)
T ss_dssp SCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred CChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence 976655 3478889996 988888864
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00055 Score=60.05 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=67.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe---CCCCCCchHHHHHHHhc--CCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV---NPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+++|||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+.+..... |..+ ..+..+.+.+.. .+++|++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~g~iDiL 79 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD-PLTLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 478999987 9999999999999999 999999999887766655544322 2222 122222232221 1479999
Q ss_pred EEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 269 FECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 269 id~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++++|.. ...+.++..+.++.|++|.++..
T Consensus 80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~ 134 (247)
T 3ged_A 80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAST 134 (247)
T ss_dssp EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCG
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeec
Confidence 9988751 12344444454434999988754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00041 Score=61.94 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=72.5
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc-----C--Cce--EeCCCCCCchHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF-----G--VTE--FVNPKDHDKPIQQ 255 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l-----g--~~~--v~~~~~~~~~~~~ 255 (379)
+.....+.++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++. | .+. ++..+- .+
T Consensus 91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~--~~--- 164 (280)
T 1i9g_A 91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL--AD--- 164 (280)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG--GG---
T ss_pred HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch--Hh---
Confidence 4556678999999999998 7888889999764 34999999999988877653 4 221 222211 11
Q ss_pred HHHHhcCCCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEcc
Q 016978 256 VLVDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. ....+.+|+|+.....+ ..+..+.+.|+++ |+++.+..
T Consensus 165 ~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 204 (280)
T 1i9g_A 165 S--ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA 204 (280)
T ss_dssp C--CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred c--CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 0 01123799988655554 6789999999997 99987754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00022 Score=64.60 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
--+|++|+|+|+|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+. ++.. .++. +.. ...|+|+.+
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~----~~l~----~~l-~~aDvVi~~ 222 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT----DELK----EHV-KDIDICINT 222 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG----GGHH----HHS-TTCSEEEEC
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch----hhHH----HHh-hCCCEEEEC
Confidence 3468999999999999999999999999 999999999887777777764 2222 1222 222 268999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++....-...+..++++ +.++.++.
T Consensus 223 ~p~~~i~~~~~~~mk~g-~~lin~a~ 247 (300)
T 2rir_A 223 IPSMILNQTVLSSMTPK-TLILDLAS 247 (300)
T ss_dssp CSSCCBCHHHHTTSCTT-CEEEECSS
T ss_pred CChhhhCHHHHHhCCCC-CEEEEEeC
Confidence 88632224567778886 88988875
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00081 Score=53.31 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=58.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.++|+|+|+|.+|..+++.+...|+ +|+++++++++.+.+++.|...+. +..+ .+ .+++..-.++|.|+.+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~--~~---~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD--ES---FYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC--HH---HHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC--HH---HHHhCCcccCCEEEEecC
Confidence 4689999999999999999999999 899999999999988888765433 2222 22 333332237999999999
Q ss_pred CHH
Q 016978 274 NVS 276 (379)
Q Consensus 274 ~~~ 276 (379)
+..
T Consensus 80 ~~~ 82 (141)
T 3llv_A 80 DDE 82 (141)
T ss_dssp CHH
T ss_pred CHH
Confidence 744
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=61.34 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=67.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+..+.-.+.. ..|..+ ..+..+.+.+ .+++|+++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~--~g~iDiLVNN 85 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD-SQRLQRLFEA--LPRLDVLVNN 85 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC-HHHHHHHHHH--CSCCSEEEEC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC-HHHHHHHHHh--cCCCCEEEEC
Confidence 6999999988 9999999999999999 9999999887654332211111 123333 1333333333 2579999999
Q ss_pred CCCH-----------------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 272 IGNV-----------------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 272 ~g~~-----------------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+|-. ...+.++..++.++|+||.++...
T Consensus 86 AGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 136 (242)
T 4b79_A 86 AGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY 136 (242)
T ss_dssp CCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 8841 123445555654349999987643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00044 Score=61.58 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=72.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
-.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ +++|.... .|..+ ..+..+.+.+.. .|++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN-LAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCE
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCC
Confidence 36899999988 9999999999999999 999999999887644 55665443 23222 122322233222 2479
Q ss_pred cEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 266 DYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 266 d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|++++++|.. ...+.++..++++ |.+|.++..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~ 161 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGST 161 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCG
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeeh
Confidence 9999988751 1356666678885 999988754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00049 Score=54.50 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=55.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+++|+|+|+|.+|..+++.+...|+ +|+++++++++.+.+++.+...+. .+. .+ .+.+.+...+++|+|+.+++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~d~--~~-~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA--TE-ENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEE-CCT--TC-HHHHHTTTGGGCSEEEECCCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEE-eCC--CC-HHHHHhcCCCCCCEEEECCCC
Confidence 5679999999999999999999998 799999998888777766654332 221 11 223333212379999999997
Q ss_pred H
Q 016978 275 V 275 (379)
Q Consensus 275 ~ 275 (379)
.
T Consensus 81 ~ 81 (144)
T 2hmt_A 81 N 81 (144)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.001 Score=55.74 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC---------CeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA---------SRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~---------~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~ 261 (379)
++++++||.+|+|+ |..+..+++..|. .+|++++.++... +..-.++ ..+-........+.+..
T Consensus 20 ~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (196)
T 2nyu_A 20 LRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILEVL 93 (196)
T ss_dssp CCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHHhc
Confidence 67899999999987 9999999999874 4899999887431 1111233 22211233444444444
Q ss_pred CC-CccEEEE-----cCCCH------------HHHHHHHHHhccCCceEEEEc
Q 016978 262 DG-GVDYSFE-----CIGNV------------SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 ~~-g~d~vid-----~~g~~------------~~~~~~~~~l~~~~G~iv~~g 296 (379)
++ .+|+|+. +.+.. ..+..+.+.|+++ |+++..-
T Consensus 94 ~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~ 145 (196)
T 2nyu_A 94 PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT 145 (196)
T ss_dssp GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 44 8999994 44432 4577889999997 9998763
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0014 Score=56.80 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.|.+|||+|+ |.+|..++..+...|+ +|+++++++++.+.+.+.++..++..+- . +.+.+.. +++|+||+++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl---~--~~~~~~~-~~~D~vi~~a 92 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANL---E--EDFSHAF-ASIDAVVFAA 92 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCT---T--SCCGGGG-TTCSEEEECC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEccc---H--HHHHHHH-cCCCEEEECC
Confidence 4789999998 9999999999999999 9999999999888777766622332221 1 2233332 2799999998
Q ss_pred CCHH-------------HHHHHHHHhcc-CCceEEEEccCC
Q 016978 273 GNVS-------------VMRAALECCHK-GWGTSVIVGVAA 299 (379)
Q Consensus 273 g~~~-------------~~~~~~~~l~~-~~G~iv~~g~~~ 299 (379)
|... ....+++.++. +.+++|.++...
T Consensus 93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 133 (236)
T 3e8x_A 93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG 133 (236)
T ss_dssp CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 8521 11223333332 226899887754
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.002 Score=55.90 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCce-E--eCCCCCCchHHHHHHHhc--CCCccE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
++++||+|+ |++|.+.+..+...|+ +|+++++++++.+.+.+ ++... . .|..+ ..+..+.+.+.. .+++|+
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id~ 80 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH-HEDVDVAFAAAVEWGGLPEL 80 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS-HHHHHHHHHHHHHHHCSCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhcCCCcE
Confidence 578999988 9999999999889999 89999999887665442 33222 1 23222 122333333221 237999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+++++|.
T Consensus 81 lvnnAg~ 87 (235)
T 3l6e_A 81 VLHCAGT 87 (235)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998884
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0018 Score=57.27 Aligned_cols=102 Identities=20% Similarity=0.309 Sum_probs=64.5
Q ss_pred CCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC-c-eE--eCCCCCCchHHHHHHHhcC
Q 016978 194 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-T-EF--VNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~--vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~-~-~v--~~~~~~~~~~~~~i~~~~~ 262 (379)
.|+++||+|+ |. +|.+.++.+...|+ +|+.++++++..+.++ +.+. . .+ .|..+ ..++.+.+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN-DAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS-SHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC-HHHHHHHHHHHHH
Confidence 4789999987 66 99999998889999 8999988765444433 3333 1 12 23332 2333333333221
Q ss_pred --CCccEEEEcCCCH--------------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 263 --GGVDYSFECIGNV--------------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 --~g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+|++++++|.. + +.+.++..++++ |+||.++..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~ 149 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG-GSIVTLTYL 149 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECG
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-ceEEEEecc
Confidence 3799999988731 1 234445556665 999988754
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00041 Score=65.33 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|... . ++.+.+ ...|+|+.+
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~-~-------sL~eal-----~~ADVVilt 273 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV-L-------LVEDVV-----EEAHIFVTT 273 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------CHHHHT-----TTCSEEEEC
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee-c-------CHHHHH-----hhCCEEEEC
Confidence 3469999999999999999999999999 8999999988877777777632 1 222222 258999988
Q ss_pred CCCHHHHH-HHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMR-AALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~-~~~~~l~~~~G~iv~~g~ 297 (379)
.++...+. ..+..++++ ..++.+|-
T Consensus 274 ~gt~~iI~~e~l~~MK~g-AIVINvgR 299 (436)
T 3h9u_A 274 TGNDDIITSEHFPRMRDD-AIVCNIGH 299 (436)
T ss_dssp SSCSCSBCTTTGGGCCTT-EEEEECSS
T ss_pred CCCcCccCHHHHhhcCCC-cEEEEeCC
Confidence 87755454 667788996 88888864
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0016 Score=57.43 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +++.... .|..+ ..+..+.+.+.. .+++|
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 84 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD-LNEIAVLGAAAGQTLGAID 84 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC-HHHHHHHHHHHHHHhCCCC
Confidence 5789999988 9999999999999999 8999999988766554 3443322 23322 122222222221 23799
Q ss_pred EEEEcCCCH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 267 YSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 267 ~vid~~g~~----------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++++++|.. + ..+.++..++++ |+||.++..
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~ 140 (255)
T 4eso_A 85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSV 140 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECCh
Confidence 999988741 1 234444556675 999988764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0035 Score=55.16 Aligned_cols=105 Identities=28% Similarity=0.267 Sum_probs=68.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH----HHhcCCceEeCCCCC--CchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR----AKNFGVTEFVNPKDH--DKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~----~~~lg~~~v~~~~~~--~~~~~~~i~~~~--~~g 264 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. +++.|.+.....-|. ..+..+.+.+.. .++
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 5899999987 9999999999999999 99999998876543 334565443222111 123333333322 247
Q ss_pred ccEEEEcCCCH-------------------------HHHHHHHHHh--ccCCceEEEEccCC
Q 016978 265 VDYSFECIGNV-------------------------SVMRAALECC--HKGWGTSVIVGVAA 299 (379)
Q Consensus 265 ~d~vid~~g~~-------------------------~~~~~~~~~l--~~~~G~iv~~g~~~ 299 (379)
+|++++++|.. ...+.++..+ +.++|+||.++...
T Consensus 87 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~ 148 (255)
T 4g81_D 87 VDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT 148 (255)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence 99999998851 1234555555 22248999987653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0017 Score=55.09 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~ 258 (379)
++....+.++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++ +|.. .++..+. .+ .
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~--~~---~-- 116 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA--PA---A-- 116 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT--TG---G--
T ss_pred HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch--hh---h--
Confidence 34556788999999999975 8888888888 77 99999999998877764 4544 2232221 11 0
Q ss_pred HhcC-CCccEEEEcCCC-HHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTD-GGVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~-~g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.. ..+|+|+...+. ...+..+.+.|+++ |+++....
T Consensus 117 -~~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 155 (204)
T 3njr_A 117 -LADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV 155 (204)
T ss_dssp -GTTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred -cccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence 111 269999965443 23789999999997 99987644
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0028 Score=53.55 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=72.3
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~ 259 (379)
++...+++++++||-+|+|. |..++.+++.....+|++++.+++..+.+++ .|.+. ++..+. .+ .
T Consensus 32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~------~ 102 (204)
T 3e05_A 32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA--PE------G 102 (204)
T ss_dssp HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT--TT------T
T ss_pred HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh--hh------h
Confidence 34566788999999999974 8888999988644599999999998887765 34322 222211 00 0
Q ss_pred hcC-CCccEEEEcCC---CHHHHHHHHHHhccCCceEEEEcc
Q 016978 260 LTD-GGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~~-~g~d~vid~~g---~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
... +.+|+|+.... ....+..+.+.|+++ |+++....
T Consensus 103 ~~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV 143 (204)
T ss_dssp CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence 111 36999997654 256789999999997 99987643
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0031 Score=55.53 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce--E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE--F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~--v--~~~~~~~~~~~~~i~~~~- 261 (379)
.|+++||+|+ | ++|.+.++.+...|+ +|+.+++++++++.+ ++++... . .|..+ ..+..+.+.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS-DEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 5899999997 5 899999999999999 899999988765544 3344322 2 23332 122322222221
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+.+|++++++|.
T Consensus 83 ~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 83 DVGNIDGVYHSIAF 96 (256)
T ss_dssp HHCCCSEEEECCCC
T ss_pred HhCCCCEEEecccc
Confidence 2479999998773
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0027 Score=56.06 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=66.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH---HhcCCceE---eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA---KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~---~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g 264 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++.+.... .|..+ ..+..+.+.+.. .++
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~v~~~~~~~G~ 83 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD-DAQCRDAVAQTIATFGR 83 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 5899999988 9999999999999999 899988877654433 33444332 23332 122222222221 247
Q ss_pred ccEEEEcCCCH------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 265 VDYSFECIGNV------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 265 ~d~vid~~g~~------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|++++++|.. ...+.++..++.++|+||.++..
T Consensus 84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 141 (258)
T 4gkb_A 84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK 141 (258)
T ss_dssp CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence 99999998841 12344555565435999988754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=54.56 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=71.2
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-eEeCCCCCCchHHHHHHHhc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~v~~~~~~~~~~~~~i~~~~ 261 (379)
.....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++ .|.. .++...+.... +.. .
T Consensus 18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~-~ 91 (178)
T 3hm2_A 18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA----FDD-V 91 (178)
T ss_dssp HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG----GGG-C
T ss_pred HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh----hhc-c
Confidence 4455678999999999985 8899999988744499999999988887764 3543 22111110011 111 1
Q ss_pred CCCccEEEEcCCC--HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGN--VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~--~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+|+|+....- ...+..+.+.|+++ |+++....
T Consensus 92 ~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 128 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV 128 (178)
T ss_dssp CSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred CCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence 1479999965433 34799999999997 99987643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0025 Score=56.00 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=65.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE-e--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF-V--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++.... + |..+ ..++.+.+.+.. .+.+|
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 82 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS-EADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC-HHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4689999988 9999999999999999 899999988776544 34443322 2 2222 122333333321 13689
Q ss_pred EEEEcCCCH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 267 YSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 267 ~vid~~g~~----------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++++++|.. + ..+.++..++...|++|.++..
T Consensus 83 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~ 139 (253)
T 1hxh_A 83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASV 139 (253)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcch
Confidence 999998741 1 2334445554423899988754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0035 Score=55.98 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HH----HHHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FD----RAKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~----~~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.++++.+...|+ +|++++++.++ .+ .+++.|.... .|..+ ..++.+.+.+.. .
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV-VEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 88888777543 22 2344454332 22222 122323333221 1
Q ss_pred CCccEEEEcCCCH----------H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV----------S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++++++|.. + +++.++..++.. |++|.++..
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 165 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 165 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence 3799999998741 1 234555556564 999998764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0043 Score=56.02 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=53.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|++|||+|+ |++|...+..+...|+ +|+++++++++.+.+. +.+.... .|..+ ..++.+.+.+.. .+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH-LDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHhCC
Confidence 5789999988 9999999999999999 8999999988765443 2343322 23332 122333333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 108 ~id~lvnnAg~ 118 (301)
T 3tjr_A 108 GVDVVFSNAGI 118 (301)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999883
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0017 Score=56.98 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=73.3
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc-----CCce--EeCCCCCCchHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF-----GVTE--FVNPKDHDKPIQQVL 257 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l-----g~~~--v~~~~~~~~~~~~~i 257 (379)
+.....+.++++||-+|+|. |..+..+++..| ..+|++++.+++..+.+++. |.+. ++..+- .+.
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~~---- 160 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL--EEA---- 160 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG--GGC----
T ss_pred HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch--hhc----
Confidence 44556788999999999985 889999999864 34999999999988887754 5332 222111 110
Q ss_pred HHhcCCCccEEEEcCCCH-HHHHHHHHHhccCCceEEEEcc
Q 016978 258 VDLTDGGVDYSFECIGNV-SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+..+.+|+|+.....+ ..+..+.+.|+++ |+++.+..
T Consensus 161 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 199 (258)
T 2pwy_A 161 -ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP 199 (258)
T ss_dssp -CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred -CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence 12223799998765554 6789999999997 99987753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00061 Score=57.71 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=78.3
Q ss_pred eeeeeEE-ecCcceEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc
Q 016978 148 TFSQYTV-VHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226 (379)
Q Consensus 148 ~~~~~~~-v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~ 226 (379)
.|.+|.. .+....+.+++.+.+..+..-. . ......+.. .++++++||-+|+|. |..+..+++ .+..+|++++
T Consensus 17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~-~~~~~~l~~--~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD 90 (205)
T 3grz_A 17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT-T-QLAMLGIER--AMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD 90 (205)
T ss_dssp TTCCCCCSSTTCEEEEESCC-----CCHHH-H-HHHHHHHHH--HCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred cccccccCCCCceeEEecCCcccCCCCCcc-H-HHHHHHHHH--hccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence 5666666 6777888888887665542211 0 001111111 156889999999875 777777776 4666999999
Q ss_pred CChhHHHHHHh----cCCc--eEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH---HHHHHHHHHhccCCceEEEEc
Q 016978 227 IDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV---SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 227 ~~~~~~~~~~~----lg~~--~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+++..+.+++ .+.. .++..+- . +...+.+|+|+-..... ..+..+.+.|+++ |+++..+
T Consensus 91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~-------~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 159 (205)
T 3grz_A 91 ISDESMTAAEENAALNGIYDIALQKTSL--L-------ADVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSG 159 (205)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEESST--T-------TTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEeccc--c-------ccCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 99988877765 3432 2222221 1 12234899998654332 2355666778896 9888753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0043 Score=55.71 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HH----HHHhcCCceEe---CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FD----RAKNFGVTEFV---NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~----~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++++ .+ .+++.|....+ |..+ ..++.+.+.+.. .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD-EQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 88888877543 22 23344544322 3322 122222233221 1
Q ss_pred CCccEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+|++++++|.. .+.+.++..++++ |+||.++..
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~ 184 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASI 184 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCT
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEech
Confidence 3799999987631 1234445556675 899988653
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0053 Score=53.29 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEe--CCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
++++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++....++ |..+ ...+.+.+. ..+++|++|
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~--~~~~id~vi 81 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD-WEATERALG--SVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHT--TCCCCCEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC-HHHHHHHHH--HcCCCCEEE
Confidence 5789999988 9999999999999999 8999999887765443 33222333 2222 122222222 123799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 82 ~~Ag~ 86 (244)
T 3d3w_A 82 NNAAV 86 (244)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 99873
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0043 Score=56.33 Aligned_cols=99 Identities=14% Similarity=0.262 Sum_probs=71.9
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.+..++.++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .++.. + + .
T Consensus 82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d----~----~ 150 (318)
T 2fk8_A 82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-G----W----E 150 (318)
T ss_dssp HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-C----G----G
T ss_pred HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-C----h----H
Confidence 45666788999999999976 8888899988888 999999999988877753 322 12211 1 1 1
Q ss_pred HhcCCCccEEEEc-----CCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+. ++.+|+|+.. .+. ...+..+.+.|+++ |+++....
T Consensus 151 ~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 195 (318)
T 2fk8_A 151 DF-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSS 195 (318)
T ss_dssp GC-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred HC-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 12 2579999865 322 45688889999997 99987654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0029 Score=55.30 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++|...+ .|..+ ..++.+.+.+.. .+++|++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id~l 81 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4689999988 9999999999999999 8999999887765443 4553322 23332 122333333221 1369999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 82 vn~Ag~ 87 (245)
T 1uls_A 82 VHYAGI 87 (245)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999883
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0054 Score=52.37 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=63.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|||+|+ |.+|..++..+...|+ +|+++++++++.+.+...+...+. |..+ .+. + .+ +++|+||+++|.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d--~~~-~---~~--~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV--LTE-A---DL--DSVDAVVDALSV 72 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG--CCH-H---HH--TTCSEEEECCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc--ccH-h---hc--ccCCEEEECCcc
Confidence 5899998 9999999999999999 999999998887766544544332 2222 222 1 11 369999999976
Q ss_pred H----------HHHHHHHHHhccCCceEEEEcc
Q 016978 275 V----------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 275 ~----------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. .....+++.++...+++|.++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 2 2345555666553368888854
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0056 Score=54.55 Aligned_cols=79 Identities=30% Similarity=0.401 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++... . .|..+ ..+..+.+.+.. .+++|
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 105 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD-EQQIIAMVDACVAAFGGVD 105 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC-HHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5789999988 9999999999999999 899999988776544 3454432 2 23332 122222232221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 106 ~lvnnAg~ 113 (277)
T 3gvc_A 106 KLVANAGV 113 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=55.98 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=54.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.|.+.. .|..+ ..+..+.+.+.. .+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK-KKDVEEFVRRTFETYS 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5899999988 9999999999999999 899999998876543 34565443 23322 123332232221 24
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
+.|++++++|
T Consensus 84 ~iDiLVNNAG 93 (254)
T 4fn4_A 84 RIDVLCNNAG 93 (254)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCc
Confidence 7999999887
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00064 Score=58.93 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=68.8
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHHHhc-
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~~~~- 261 (379)
....++++||-+|+| .|..+..+++.....+|++++.+++..+.+++. |.. .++..+. .+ .+....
T Consensus 50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~---~~~~~~~ 123 (233)
T 2gpy_A 50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA--LQ---LGEKLEL 123 (233)
T ss_dssp HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG--GG---SHHHHTT
T ss_pred HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH--HH---HHHhccc
Confidence 345678999999998 688889999988434999999999988877653 542 1222211 11 112221
Q ss_pred CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 262 DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 ~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.||+|+..... ...+..+.+.|+++ |+++...
T Consensus 124 ~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~ 160 (233)
T 2gpy_A 124 YPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN 160 (233)
T ss_dssp SCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence 3479998865443 46678889999997 9988753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0032 Score=55.11 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCC--CchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDH--DKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~--~~~~~~~i~~~~--~~g~d~ 267 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++++....+..-|. ..+..+.+.+.. .+++|+
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 83 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI 83 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence 5789999988 9999999999999999 899999998876544 34555433222111 122222232221 137999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+++++|.
T Consensus 84 lv~nAg~ 90 (247)
T 3rwb_A 84 LVNNASI 90 (247)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999884
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0091 Score=50.70 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=63.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. .+...+ .|..+ .+. + .+ +++|+||+++|.
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d--~~~-~---~~--~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD--LTL-S---DL--SDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG--CCH-H---HH--TTCSEEEECCCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC--hhh-h---hh--cCCCEEEECCcC
Confidence 6999998 9999999999999998 9999999988776654 333322 22222 222 1 12 369999999986
Q ss_pred H--------HHHHHHHHHhccC-CceEEEEccC
Q 016978 275 V--------SVMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 275 ~--------~~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
. .....+++.++.. .++++.++..
T Consensus 72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp STTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 3 2345566666653 2688887653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0033 Score=56.00 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc-e--Ee--CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT-E--FV--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~-~--v~--~~~~~~~~~~~~i~~~~-- 261 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. +.+.. . ++ |..+ ..++.+.+.+..
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ 108 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHh
Confidence 4689999988 9999999999999999 8999999887655432 23321 1 22 3322 122333333221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 109 ~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 109 HSGVDICINNAGL 121 (279)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 1379999999873
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0047 Score=53.84 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcC---CceEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG---VTEFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg---~~~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++. --.++ |..+ ...+.+.+.+.. .+.
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSS
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 4689999988 9999999999999999 8999999887655432 232 11222 2222 122333333321 136
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|+++|.
T Consensus 83 id~li~~Ag~ 92 (251)
T 1zk4_A 83 VSTLVNNAGI 92 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0078 Score=53.41 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=64.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH----HHhcCCceEe---CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR----AKNFGVTEFV---NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~----~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++ ++++.+. +++.|....+ |..+ ..++.+.+.+.. .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD-AEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 7877744 4444332 2334544322 2222 122333333322 1
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++++++|.. ...+.++..++++ |++|.++..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~ 167 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN 167 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence 3799999998741 1245556667775 999988653
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0032 Score=55.44 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc-----CCc-eE--eCCCCCCchHHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVT-EF--VNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l-----g~~-~v--~~~~~~~~~~~~~i~~~~~~ 263 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++ +.. .+ .|..+ ...+.+.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE-PGDIDRLFEKARDL 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC-HHHHHHHHHHHHHh
Confidence 4689999988 9999999999989999 8999999887655432 22 212 22 23332 12333334333222
Q ss_pred -CccEEEEcCCC
Q 016978 264 -GVDYSFECIGN 274 (379)
Q Consensus 264 -g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 84 ~gid~lv~~Ag~ 95 (260)
T 2z1n_A 84 GGADILVYSTGG 95 (260)
T ss_dssp TCCSEEEECCCC
T ss_pred cCCCEEEECCCC
Confidence 49999999883
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=57.48 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=69.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhc----CCceEeCCCCCCchHHHHHHHhc---
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT--- 261 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~l----g~~~v~~~~~~~~~~~~~i~~~~--- 261 (379)
.+..++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++. |....+.... .+..+.+.+..
T Consensus 56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL--GSALETLQVLIDSK 132 (239)
T ss_dssp HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHCS
T ss_pred HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE--CCHHHHHHHHHhhc
Confidence 345678999999997 5888999999884 34999999999888777653 5432111111 12333232221
Q ss_pred -----------C-CCccEEEEcCCCH---HHHHHHHHHhccCCceEEEE
Q 016978 262 -----------D-GGVDYSFECIGNV---SVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 -----------~-~g~d~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 295 (379)
. +.||+|+...... ..+..+.+.|+++ |.++.-
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~ 180 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIAD 180 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence 1 5799999765543 5678899999997 998865
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.012 Score=45.98 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=53.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ ++...+. +..+ . +.+.+..-.++|+|+.++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~--~---~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK--I---KTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS--H---HHHHHTTTTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC--H---HHHHHcCcccCCEEEEee
Confidence 4579999999999999999988998 89999999888776664 5654332 2211 1 123322123799999999
Q ss_pred CCHH
Q 016978 273 GNVS 276 (379)
Q Consensus 273 g~~~ 276 (379)
+...
T Consensus 78 ~~~~ 81 (140)
T 1lss_A 78 GKEE 81 (140)
T ss_dssp SCHH
T ss_pred CCch
Confidence 8854
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00053 Score=59.62 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=70.4
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceE-eCCCCCCchHHHHHHHh
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEF-VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v-~~~~~~~~~~~~~i~~~ 260 (379)
+.+...+.++++||.+|+| .|..+..+++..+ .+|++++.+++..+.+++ .|...+ +...+ . ....
T Consensus 83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d----~---~~~~ 153 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD----G---SKGF 153 (235)
T ss_dssp HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC----G---GGCC
T ss_pred HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC----c---ccCC
Confidence 3455578899999999998 7899999999887 499999999988777765 343221 11111 1 0112
Q ss_pred cCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 261 TDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 261 ~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
..+ ++|+|+....-......+.+.|+++ |+++..
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~ 188 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 188 (235)
T ss_dssp GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred CCCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEE
Confidence 223 5999998766555567888999997 988765
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0068 Score=52.07 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=68.4
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHh----cCCc--eE-eCCCCCCchHHHHHH
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVT--EF-VNPKDHDKPIQQVLV 258 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~----lg~~--~v-~~~~~~~~~~~~~i~ 258 (379)
...+.+++.+||=+|+| .|..++.+|+.+ +. +|++++.+++..+.+++ .|.. .+ +.. .+..+.+.
T Consensus 50 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~----gda~~~l~ 123 (221)
T 3dr5_A 50 ATTNGNGSTGAIAITPA-AGLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLL----SRPLDVMS 123 (221)
T ss_dssp HHSCCTTCCEEEEESTT-HHHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC----SCHHHHGG
T ss_pred HhhCCCCCCCEEEEcCC-chHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE----cCHHHHHH
Confidence 33445556799999986 588889999987 45 99999999988777764 4443 11 211 23333333
Q ss_pred HhcCCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEE
Q 016978 259 DLTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+..+.||+||-.... ...+..+.+.|+++ |.++.-
T Consensus 124 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d 162 (221)
T 3dr5_A 124 RLANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLA 162 (221)
T ss_dssp GSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEET
T ss_pred HhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 3334589999854332 34688999999996 988864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0055 Score=54.31 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=65.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHH----HHHhcCCceEe---CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD----RAKNFGVTEFV---NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~----~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+++++ ++++.+ .+++.|....+ |..+ ..+..+.+.+.. .
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ-VPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 7877654 444433 23344544322 2222 123333333321 1
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+.+|++++++|.. .+.+.++..+.++ |++|.++...
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~ 155 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT 155 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence 3799999988841 1245666677785 9999997644
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0016 Score=57.80 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+....... ..|..+ ..++.+.+.+.. .+++|+++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 92 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD-KYTFDTAITRAEKIYGPADAIV 92 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC-HHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 4789999988 9999999999999999 8999989887765443222111 123322 122333333221 13799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 93 nnAg~ 97 (266)
T 3p19_A 93 NNAGM 97 (266)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99884
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0038 Score=56.25 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC---ce-E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE-F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~---~~-v--~~~~~~~~~~~~~i~~~~- 261 (379)
.++++||+|+ |++|.+++..+...|+ +|+++++++++.+.+. +.+. .. + .|..+ ..++.+.+.+..
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 102 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC-HHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 8999999887655432 2332 22 2 23332 122323333221
Q ss_pred -CCCccEEEEcCC
Q 016978 262 -DGGVDYSFECIG 273 (379)
Q Consensus 262 -~~g~d~vid~~g 273 (379)
.+++|++|+++|
T Consensus 103 ~~g~iD~lvnnAG 115 (297)
T 1xhl_A 103 KFGKIDILVNNAG 115 (297)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 137999999887
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0068 Score=54.04 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhHHHH----HHhcCCceE---eCCCCCCchH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDR----AKNFGVTEF---VNPKDHDKPI 253 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------------~~~~~~----~~~lg~~~v---~~~~~~~~~~ 253 (379)
.|++|||+|+ |++|..+++.+...|+ +|++++++ .++.+. +++.+.... .|..+ ..+.
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD-RAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC-HHHH
Confidence 5789999988 9999999999999999 89998876 443332 233444332 23332 1223
Q ss_pred HHHHHHhc--CCCccEEEEcCCCH--------H---------------HHHHHHHHhccCCceEEEEcc
Q 016978 254 QQVLVDLT--DGGVDYSFECIGNV--------S---------------VMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 254 ~~~i~~~~--~~g~d~vid~~g~~--------~---------------~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+.+.. .+++|++++++|.. + +.+.++..+..+ |++|.++.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS 154 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEecc
Confidence 23333221 13799999988741 1 233444455664 89998865
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0035 Score=54.99 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCch---HHHHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKP---IQQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~---~~~~i~~~~~ 262 (379)
.++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +.|.... .|..+ ..+ +.+.+.+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~-- 81 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN-EDEVTAFLNAADAH-- 81 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC-HHHHHHHHHHHHhh--
Confidence 5789999988 9999999999999999 8999999887654433 3344322 23322 122 22333333
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 82 g~id~lv~nAg~ 93 (252)
T 3h7a_A 82 APLEVTIFNVGA 93 (252)
T ss_dssp SCEEEEEECCCC
T ss_pred CCceEEEECCCc
Confidence 579999999884
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=55.34 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=70.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhc----CCceE-eCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF----GVTEF-VNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~l----g~~~v-~~~~~~~~~~~~~i~~ 259 (379)
+.+...+.++++||.+|+| .|..+..+++..|. .+|++++.+++..+.+++. |.+.+ +...+ .. ..
T Consensus 69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d----~~---~~ 140 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD----GT---LG 140 (215)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC----GG---GC
T ss_pred HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC----cc---cC
Confidence 3455678899999999998 58899999998862 3899999999888777653 33221 11111 10 01
Q ss_pred hc-CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 260 LT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 260 ~~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.. .+.+|+|+....-......+.+.|+++ |+++..-
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~ 177 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPV 177 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred CCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEE
Confidence 11 237999998766555557888999997 9988663
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0062 Score=52.01 Aligned_cols=97 Identities=8% Similarity=0.058 Sum_probs=61.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHH-HcCCCeEEEEcCChh-HHHHHHhcCCce-Ee--CCCCCCchHHHHHHHhcCCCccEEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPK-KFDRAKNFGVTE-FV--NPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~-~~g~~~vi~v~~~~~-~~~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
++|||+|+ |.+|..+++.+. ..|+ +|++++++++ +.+.+...+... ++ |..+ .+ .+.+... ++|+||
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~---~~~~~~~-~~d~vv 78 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN--PG---XLEQAVT-NAEVVF 78 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC--HH---HHHHHHT-TCSEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC--HH---HHHHHHc-CCCEEE
Confidence 57999998 999999888887 8999 8999999988 665553222222 22 2222 22 2223222 689999
Q ss_pred EcCCCHHH-HHHHHHHhccC-CceEEEEccCC
Q 016978 270 ECIGNVSV-MRAALECCHKG-WGTSVIVGVAA 299 (379)
Q Consensus 270 d~~g~~~~-~~~~~~~l~~~-~G~iv~~g~~~ 299 (379)
+++|.... ...++..++.. .+++|.++...
T Consensus 79 ~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 79 VGAMESGSDMASIVKALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp ESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence 99986211 44455555442 25888887543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0053 Score=55.18 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=65.5
Q ss_pred CCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~--vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |. +|.+.++.+...|+ +|++++++++..+.++ +.+...++ |..+ ..++.+.+.+.. .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD-AASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC-HHHHHHHHHHHHHhc
Confidence 5789999987 66 99999999999999 8999988865443332 33432222 3322 122333333221 2
Q ss_pred CCccEEEEcCCCH-----------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-----------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-----------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++|+++|.. .+.+.++..++++ |+||.++..
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~ 171 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYY 171 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECG
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeeh
Confidence 4799999998741 1244555667775 999988754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.019 Score=49.37 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=50.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCce---EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTE---FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~---v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
++|||+|+ |++|.+++..+...|+ +|+.+++++++.+.+.+ ++... ..|..+ .+..+.+.+.....+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS--HQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC--HHHHHHHHHSCSSCCSEEEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC--HHHHHHHHHHHhhcCCEEEE
Confidence 46899988 9999999999999999 89999999888766543 43222 123332 33333333322334599999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 79 ~Ag~ 82 (230)
T 3guy_A 79 SAGS 82 (230)
T ss_dssp CCCC
T ss_pred eCCc
Confidence 9873
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=57.36 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++ .+.+++.++..+ .|..+ ..++.+.+.+.. .+++|++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l 103 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC-ETGIMAFIDLLKTQTSSLRAV 103 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS-HHHHHHHHHHHHHHCSCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC-HHHHHHHHHHHHHhcCCCCEE
Confidence 4688999988 9999999999999999 89998887765 344555665332 23332 122333333221 2479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 104 v~nAg~ 109 (260)
T 3gem_A 104 VHNASE 109 (260)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999884
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0044 Score=54.69 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~-~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
++++|||+|+ |.+|..++..+.. .|+ +|++++++.++.+.+ ++.+... ++ |..+ ..++.+.+.+.. .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD-LQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 5789999988 9999998888887 899 899998887665432 2224322 22 3222 123333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 81 g~id~li~~Ag~ 92 (276)
T 1wma_A 81 GGLDVLVNNAGI 92 (276)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999999873
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0066 Score=53.60 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=63.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc-----CCce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF-----GVTE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l-----g~~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +++ +... . .|..+ ..++.+.+....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 899998988765432 222 1111 2 23322 123333333321
Q ss_pred CCCccEEEEcCCCH------H-----------HHHHHHHHhccC----CceEEEEccC
Q 016978 262 DGGVDYSFECIGNV------S-----------VMRAALECCHKG----WGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~------~-----------~~~~~~~~l~~~----~G~iv~~g~~ 298 (379)
.+++|++++++|.. . ..+.++..+.+. .|++|.++..
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 141 (267)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence 13699999998841 0 223445555431 2889988754
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0041 Score=54.83 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcC--CceE-eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFG--VTEF-VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg--~~~v-~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|..++..+...|+ +|+++++++++.+.+. ++. ...+ .|..+ ..++.+.+.+.. .+++|
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~g~iD 88 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK-RASVDAAMQKAIDALGGFD 88 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999999999 8999999887765543 332 2111 23332 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 89 ~lv~~Ag~ 96 (263)
T 3ak4_A 89 LLCANAGV 96 (263)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999873
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0039 Score=54.69 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=52.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----c-C--Cce-EeCC--CCCCchHHHHHHHhc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F-G--VTE-FVNP--KDHDKPIQQVLVDLT 261 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----l-g--~~~-v~~~--~~~~~~~~~~i~~~~ 261 (379)
-.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ . + ... ..|. .+ ..+..+.+.+..
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCT-SENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCC-HHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCC-HHHHHHHHHHHH
Confidence 35789999988 9999999999999999 89999999877654432 1 1 111 1232 21 122222232221
Q ss_pred --CCCccEEEEcCCC
Q 016978 262 --DGGVDYSFECIGN 274 (379)
Q Consensus 262 --~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 88 ~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHCSCCSEEEECCCC
T ss_pred HhCCCCCEEEECCcc
Confidence 2479999999874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0097 Score=53.46 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHH----HHHhcCCceEeCCCCC-Cc-hHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFD----RAKNFGVTEFVNPKDH-DK-PIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~----~~~~lg~~~v~~~~~~-~~-~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.+.+..+...|+ +|++++++. ++.+ .+++.|....+..-|. +. +..+.+.+.. .
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 888887752 2222 2334554443322221 12 2222222221 1
Q ss_pred CCccEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++++++|.. .+.+.++..+.++ |+||.++..
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~ 187 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSI 187 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCG
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECCh
Confidence 3799999988741 1234445556675 999998764
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0041 Score=54.53 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----c--C-Cc-eE--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--G-VT-EF--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----l--g-~~-~v--~~~~~~~~~~~~~i~~~~- 261 (379)
.++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+.+ . + .. .+ .|..+ ..+..+.+.+..
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD-CTKADTEIKDIHQ 83 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC-HHHHHHHHHHHHH
Confidence 4789999988 9999999998888999 89999999887654432 1 2 11 12 23332 122333333221
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 84 ~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 84 KYGAVDILVNAAAM 97 (250)
T ss_dssp HHCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 1379999999884
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.003 Score=55.21 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEe---CCCCCCchHHHHHHHhcCCCcc
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV---NPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~---~~~~~~~~~~~~i~~~~~~g~d 266 (379)
-.++++|||+|+ |++|..++..+...|+ +|+++++++++.+.+. ++.....+ |..+ ...+.+.+.+. +++|
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id 86 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLAN-KEECSNLISKT--SNLD 86 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHTC--SCCS
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCC-HHHHHHHHHhc--CCCC
Confidence 456899999988 9999999999999999 8999999988766554 34333222 2222 12222233222 3799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 87 ~li~~Ag~ 94 (249)
T 3f9i_A 87 ILVCNAGI 94 (249)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999884
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0029 Score=56.65 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce--E--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE--F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~--v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|++|||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+... + .|..+ .....+.+.+.. .
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED-MTFAEQFVAQAGKLM 104 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 8999999987765433 234322 2 23222 122222222221 1
Q ss_pred CCccEEEEc-CC
Q 016978 263 GGVDYSFEC-IG 273 (379)
Q Consensus 263 ~g~d~vid~-~g 273 (379)
+++|++|++ .|
T Consensus 105 g~iD~li~naag 116 (286)
T 1xu9_A 105 GGLDMLILNHIT 116 (286)
T ss_dssp TSCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 379999988 44
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.004 Score=55.83 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++.... .|..+ ..++.+.+.+. +++|++
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~--~~iD~l 90 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD-LSSVRRFADGV--SGADVL 90 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC-HHHHHHHHHTC--CCEEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC-HHHHHHHHHhc--CCCCEE
Confidence 5789999988 9999999999999999 8999999988776554 3443222 22222 12233333333 479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 91 v~nAg~ 96 (291)
T 3rd5_A 91 INNAGI 96 (291)
T ss_dssp EECCCC
T ss_pred EECCcC
Confidence 999884
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=54.00 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=50.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
++++||+|+ |++|.++++.+...|+ +|+++++++++ ..++++...+ .|..+ .+..+.+.+.. .+++|++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~g~id~lv~ 76 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK--DDPKGLVKRALEALGGLHVLVH 76 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT--SCHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch--HHHHHHHHHHHHHcCCCCEEEE
Confidence 578999988 9999999999999999 89999888776 3344553222 23222 23333333221 137999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 77 ~Ag~ 80 (239)
T 2ekp_A 77 AAAV 80 (239)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8873
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0058 Score=55.00 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ | ++|.+.++.+...|+ +|++++++++..+.+ ++.+...++ |..+ ..++.+.+.+.. .
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD-AESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 5 999999999989999 899998887554433 334433333 3322 122333333321 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 107 g~iD~lVnnAG~ 118 (296)
T 3k31_A 107 GSLDFVVHAVAF 118 (296)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0036 Score=57.62 Aligned_cols=98 Identities=29% Similarity=0.278 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC-------------CCchH-HHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD-------------HDKPI-QQVLV 258 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~-------------~~~~~-~~~i~ 258 (379)
-+|++|.|+|.|.+|+.+++.++.+|+ +|++.+.++++.++.+++|++.+ +.++ ....+ .+.+.
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~ 250 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR 250 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence 579999999999999999999999999 89998888777667777776432 1100 00000 01111
Q ss_pred HhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+ +.++|++++..+.+.+++...|..+ |.++.-+
T Consensus 251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~-gIlv~Pd 284 (355)
T 1c1d_A 251 TL---DCSVVAGAANNVIADEAASDILHAR-GILYAPD 284 (355)
T ss_dssp HC---CCSEECCSCTTCBCSHHHHHHHHHT-TCEECCH
T ss_pred hC---CCCEEEECCCCCCCCHHHHHHHHhC-CEEEECC
Confidence 11 4678888777644334566777775 7666443
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0067 Score=53.10 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=63.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcC--CCccEEEEc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD--GGVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~--~g~d~vid~ 271 (379)
+++|||+|+ |++|..+++.+...|+ +|+++++++++.+. ....++..+ ..+..+.+.+... +.+|+++++
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d-~~~v~~~~~~~~~~~g~iD~li~~ 94 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG-EEEIKSVIEKINSKSIKVDTFVCA 94 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS-HHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC-HHHHHHHHHHHHHHcCCCCEEEEC
Confidence 689999988 9999999999999999 89999888764321 111223222 1334444444322 379999999
Q ss_pred CCC-----------H---------------HHHHHHHHHhccCCceEEEEccC
Q 016978 272 IGN-----------V---------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 272 ~g~-----------~---------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|. . .+.+.++..++++ |++|.++..
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 146 (251)
T 3orf_A 95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS 146 (251)
T ss_dssp CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence 883 0 1244555566775 899988754
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0059 Score=54.19 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHH---HHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQ---QVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~---~~i~~~~~ 262 (379)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+.... .|..+ ..++. +.+.+...
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS-RTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 899999988765433 22343321 23322 12222 22333332
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 579999999874
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=51.43 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHhc--CCce-E--eCCCCCC-chHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKNF--GVTE-F--VNPKDHD-KPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~~~l--g~~~-v--~~~~~~~-~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |++|..+++.+...|+++|+++++++ +..+.+++. +... + .|..+ . .++.+.+.+.. .
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC-ChHHHHHHHHHHHHhc
Confidence 4689999988 99999999999999994488887765 333333333 2222 2 23332 2 23333333321 1
Q ss_pred CCccEEEEcCCCH-----------------HHHHHHHHHhccC----CceEEEEccC
Q 016978 263 GGVDYSFECIGNV-----------------SVMRAALECCHKG----WGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-----------------~~~~~~~~~l~~~----~G~iv~~g~~ 298 (379)
+++|++|+++|.. .+.+.++..+.+. .|++|.++..
T Consensus 83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 139 (254)
T 1sby_A 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV 139 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence 3799999998841 1234444444331 2789988754
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.008 Score=52.88 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHHH----hcCCceE-e--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRAK----NFGVTEF-V--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~~----~lg~~~v-~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|.+.++.+...|+ +|+.+ .+++++.+.+. +.+.... + |..+ ..+..+.+.+.. .
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ-PAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 77775 78776654432 3344332 2 2222 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 81 g~id~lv~nAg~ 92 (258)
T 3oid_A 81 GRLDVFVNNAAS 92 (258)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0038 Score=55.61 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+... . .|..+ ..++.+.+.+.. .+
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ-PDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999999999 8999999887654432 334322 2 23332 122333333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0043 Score=55.15 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc---C---Cce-E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF---G---VTE-F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l---g---~~~-v--~~~~~~~~~~~~~i~~~~- 261 (379)
.++++||+|+ |++|..++..+...|+ +|+++++++++.+.+. ++ . ... + .|..+ ..++.+.+.+..
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 82 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 82 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC-HHHHHHHHHHHHH
Confidence 4688999988 9999999998888999 8999999887765432 22 2 111 1 23322 122333333221
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 83 ~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 83 KFGKLDILVNNAGA 96 (278)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HcCCCCEEEECCCC
Confidence 1379999999874
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0049 Score=54.40 Aligned_cols=102 Identities=11% Similarity=0.196 Sum_probs=61.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh---HHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~---~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~- 261 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.+++..+ +.+.+ ++.|.... .|..+ ..+..+.+.+..
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN-EEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHH
Confidence 5789999988 9999999999999999 8888766433 32222 22344332 23322 122323333221
Q ss_pred -CCCccEEEEcCCC----------HH---------------HHHHHHHHhccCCceEEEEccC
Q 016978 262 -DGGVDYSFECIGN----------VS---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 262 -~~g~d~vid~~g~----------~~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+++|++++++|. .+ +.+.++..++++ |++|.++..
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~isS~ 149 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPN-GHIITIATS 149 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEE-EEEEEECCC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCC-CEEEEEech
Confidence 1479999999883 11 233344445565 899988653
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0081 Score=53.16 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=63.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.++++.+...|+ +|+.+ .+++++.+.+ ++.+.... .|..+ ..++.+.+.+.. .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD-PAAVRRLFATAEEAF 103 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999998888999 77776 4555444332 33454332 23332 122333333221 1
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++|++++++|.. ..++.++..++++ |++|.++..
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~ 163 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTS 163 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeCh
Confidence 3799999998741 1244566667775 999988653
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0064 Score=53.48 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHH---HHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVL---VDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i---~~~~~ 262 (379)
.|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+... + .|..+ ..++.+.+ .+...
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 8999999887654332 234332 1 23322 12222222 22322
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++++++|
T Consensus 86 g~id~lv~~Ag 96 (260)
T 2ae2_A 86 GKLNILVNNAG 96 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57999999988
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0042 Score=54.31 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHH-HHHhcCCceE---eCCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFD-RAKNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~-~~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.++++||+|+ |++|..++..+...|+ +|+++++++ ++.+ .+++.+.... .|..+ ..++.+.+.+.. .+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 83 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 83 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHcCCC
Confidence 4789999988 9999999999999999 899998877 5543 3445554322 23332 122333333221 1479
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 84 d~lv~nAg~ 92 (249)
T 2ew8_A 84 DILVNNAGI 92 (249)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0021 Score=56.13 Aligned_cols=75 Identities=28% Similarity=0.264 Sum_probs=53.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHhcCCceEe---CCCCCCchHHHHHHHh-cCCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKNFGVTEFV---NPKDHDKPIQQVLVDL-TDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~~~lg~~~v~---~~~~~~~~~~~~i~~~-~~~g~d 266 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++ +..+.+++.|..... |..+ ... +++. ..+++|
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d--~~~---v~~~~~~g~iD 81 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD--PLA---AKDSFTDAGFD 81 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS--TTT---TTTSSTTTCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC--HHH---HHHHHHhCCCC
Confidence 5899999987 9999999999999999 899888764 445667777765432 2222 111 1222 234899
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 iLVNNAGi 89 (247)
T 4hp8_A 82 ILVNNAGI 89 (247)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999885
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0049 Score=54.15 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe--CCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV--NPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~--~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+..+++.. .++ |..+ ..++.+.+.+.. .+++|++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~-~~~~~~~~~~~~~~~g~iD~l 81 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED-ERERVRFVEEAAYALGRVDVL 81 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 4789999988 9999999999999999 89999888776444444432 333 3322 122333333221 2379999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 82 v~~Ag~ 87 (256)
T 2d1y_A 82 VNNAAI 87 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0043 Score=54.57 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ +++|.++++.+...|+ +|+++++++++.+.+. +++.... .|..+ ..++.+.+.+.. .+++|
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~id 85 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK-EADVDAAVEAALSKFGKVD 85 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4789999988 9999999999999999 8999999988766544 4554332 22222 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 86 ~li~~Ag~ 93 (261)
T 3n74_A 86 ILVNNAGI 93 (261)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0032 Score=55.41 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ .+... . .|..+ ..+..+.+.+.. .+
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN-TDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 89999999887655432 23322 1 23322 122333333221 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++++++|
T Consensus 83 ~id~lv~nAg 92 (257)
T 3imf_A 83 RIDILINNAA 92 (257)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999988
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0077 Score=52.01 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-----hcCCceEe---CCCCCCchHHHHHHHhc--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-----NFGVTEFV---NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-----~lg~~~v~---~~~~~~~~~~~~i~~~~--~~ 263 (379)
++++||+|+ |++|...++.+...|+ +|+.++++.++.+.+. +.+....+ |..+ ..++.+.+.+.. .+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK-AESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC-HHHHHHHHHHHHHhcC
Confidence 678999988 9999999999999999 8999999987755432 33443322 3322 122222222111 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999999874
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0015 Score=57.31 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCC-C
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDG-G 264 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~-g 264 (379)
...++++||-+|+|. |..++.+|+.++ ..+|++++.+++..+.+++ .|...-+.... .+..+.+...... .
T Consensus 60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~--~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE--GPALQSLESLGECPA 136 (248)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHTCCSCCC
T ss_pred hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHhcCCCCC
Confidence 456789999999874 888889998874 3499999999998877765 35431111111 2343444444333 7
Q ss_pred ccEEEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
||+|+-.... ...+..+.+.|+++ |.++.-..
T Consensus 137 fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~ 171 (248)
T 3tfw_A 137 FDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNV 171 (248)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECC
T ss_pred eEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCC
Confidence 9999833222 35688889999997 98876543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0046 Score=55.27 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCC-----ce-EeCCCCCCchHHHHHHHhcCCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV-----TE-FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~-----~~-v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
-.++++||+|+|++|.+++..+...|+++|++++++.++.+.+ ++++. .. .++. .++.+.+. .+
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~----~~l~~~l~-----~~ 195 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA----RGIEDVIA-----AA 195 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS----TTHHHHHH-----HS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH----HHHHHHHh-----cC
Confidence 4689999999999999999999999997899999998876643 33321 11 2221 23333332 48
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|+||+|++.
T Consensus 196 DiVInaTp~ 204 (283)
T 3jyo_A 196 DGVVNATPM 204 (283)
T ss_dssp SEEEECSST
T ss_pred CEEEECCCC
Confidence 999999764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.012 Score=50.92 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c-CCceE-eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F-GVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l-g~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
++++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ . +...+ .|..+ ...+.+.+. ..+++|++|
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~--~~~~id~vi 81 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD-WDATEKALG--GIGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHT--TCCCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC-HHHHHHHHH--HcCCCCEEE
Confidence 4789999988 9999999999999999 89999998877654433 2 33222 22222 122222222 123689999
Q ss_pred EcCC
Q 016978 270 ECIG 273 (379)
Q Consensus 270 d~~g 273 (379)
+++|
T Consensus 82 ~~Ag 85 (244)
T 1cyd_A 82 NNAA 85 (244)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 9988
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0045 Score=54.35 Aligned_cols=79 Identities=25% Similarity=0.248 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.... .|..+ ..++.+.+.+.. .+++|
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~iD 81 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999999999 899999988776544 34443221 23332 123333333322 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ~lv~nAg~ 89 (254)
T 1hdc_A 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0053 Score=53.87 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----eEeCCCCCCchHHHHHHHhc
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----~v~~~~~~~~~~~~~i~~~~ 261 (379)
+.+...+.++++||-+|+| .|..+..+++..++ +|++++.+++..+.+++.... .++..+- .++ ...
T Consensus 47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~--~~~-----~~~ 117 (266)
T 3ujc_A 47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI--LTK-----EFP 117 (266)
T ss_dssp HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT--TTC-----CCC
T ss_pred HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc--ccC-----CCC
Confidence 4566678899999999987 68888888887787 999999999999999876532 1222211 110 122
Q ss_pred CCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+|+|+....- ..++..+.+.|+++ |+++....
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 160 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY 160 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence 3489999975321 34578889999997 99987754
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0045 Score=54.55 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc----CCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l----g~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++ +.... .|..+ ..++.+.+.+.. .
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT-PEGVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 8999999887655432 22 43322 23332 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0035 Score=57.16 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC--ce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--TE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~--~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.|++|||+|+ |++|..++..+...|+ +|+++++++++.+.+. ..+. .. + .|..+ ...+.+.+....
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS-REGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4789999988 9999999999999999 8999999988765443 2232 11 2 23332 123333333321
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+++|++|+++|
T Consensus 85 ~g~id~lv~nAg 96 (319)
T 3ioy_A 85 FGPVSILCNNAG 96 (319)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCCCEEEECCC
Confidence 247999999988
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0046 Score=54.45 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++++.... .|..+ ..++.+.+.+.. .+++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 84 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR-QDSIDAAIAATVEHAGGLD 84 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHSSSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5789999988 9999999999999999 899999988776544 34544322 23332 122333333221 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 85 ~lv~~Ag~ 92 (259)
T 4e6p_A 85 ILVNNAAL 92 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0046 Score=54.67 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=51.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc-----CCceE---eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF-----GVTEF---VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l-----g~~~v---~~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++ +.... .|..+ ..++.+.+.+..
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 89 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999999989999 8999999887655432 21 43322 23332 123333333221
Q ss_pred CCCccEEEEcCC
Q 016978 262 DGGVDYSFECIG 273 (379)
Q Consensus 262 ~~g~d~vid~~g 273 (379)
.+++|++|+++|
T Consensus 90 ~g~id~lv~nAg 101 (267)
T 1iy8_A 90 FGRIDGFFNNAG 101 (267)
T ss_dssp HSCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 237999999887
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0045 Score=55.19 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ .+++.... .|..+ ..+..+.+.+.. .+++|
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS-AKDAESMVEKTTAKWGRVD 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999999999 899999988776544 34554332 23322 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 104 ~lv~nAg~ 111 (277)
T 4dqx_A 104 VLVNNAGF 111 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999883
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0059 Score=53.23 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE--eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v--~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.++.--.. .|..+ .+..+.+.+. .+++|++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~~~id~lv~ 80 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK--KKQIDQFANE-VERLDVLFN 80 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC--HHHHHHHHHH-CSCCSEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC--HHHHHHHHHH-hCCCCEEEE
Confidence 4789999988 9999999999999999 89999998877654443321122 23332 3322233222 247999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 81 ~Ag~ 84 (246)
T 2ag5_A 81 VAGF 84 (246)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9873
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.01 Score=51.92 Aligned_cols=74 Identities=23% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
..|++|||+|+ |++|..+++.+...|+ +|++++++++.. ++++...++ . +...+....+.+.. ++|++|++
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~---~~~~~~~~~-~-D~~~~~~~~~~~~~--~iD~lv~~ 88 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVV-C-DLRKDLDLLFEKVK--EVDILVLN 88 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEE-C-CTTTCHHHHHHHSC--CCSEEEEC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH---HhhCCeEEE-e-eHHHHHHHHHHHhc--CCCEEEEC
Confidence 45789999988 9999999999999999 899998887443 344432232 2 11134444444432 69999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
+|.
T Consensus 89 Ag~ 91 (249)
T 1o5i_A 89 AGG 91 (249)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0038 Score=56.25 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=72.6
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.+..+++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .++.. + + .
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d----~----~ 132 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-G----W----E 132 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-C----G----G
T ss_pred HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-C----H----H
Confidence 45667789999999999974 8888999998887 999999999888777653 432 12221 1 1 1
Q ss_pred HhcCCCccEEEEcCCC---------------HHHHHHHHHHhccCCceEEEEccC
Q 016978 259 DLTDGGVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++ .+.+|+|+-...- ...+..+.+.|+++ |+++.....
T Consensus 133 ~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 185 (302)
T 3hem_A 133 EF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT 185 (302)
T ss_dssp GC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred Hc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence 22 4589999864221 36688899999997 999877653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00068 Score=59.04 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----eEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
..+|.+||-+|.| .|..+..+++..+. ++++++.+++-.+.+++.... ..+.. .++......+..+.||.
T Consensus 58 ~~~G~rVLdiG~G-~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~----~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 58 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK----GLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCT-TSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE----SCHHHHGGGSCTTCEEE
T ss_pred ccCCCeEEEECCC-ccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe----ehHHhhcccccccCCce
Confidence 4689999999997 47888888877666 899999999988888764322 11211 23444444454558998
Q ss_pred EE-EcCCC----------HHHHHHHHHHhccCCceEEEEc
Q 016978 268 SF-ECIGN----------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 268 vi-d~~g~----------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
|+ |+... ...+.++.+.|+|+ |+++.+.
T Consensus 132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred EEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence 74 55432 24577889999997 9998764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0053 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +.|... .+ |..+ ..++.+.+.+.. .+
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD-RQGVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 8999999887765432 234332 22 3322 122333333221 14
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 84 ~id~lv~nAg~ 94 (247)
T 2jah_A 84 GLDILVNNAGI 94 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0052 Score=54.42 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-H----hcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-K----NFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ + +.+.... .|..+ ..++.+.+.+.. .
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 97 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 899999988765433 2 2254332 23332 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 98 g~iD~lvnnAg~ 109 (267)
T 1vl8_A 98 GKLDTVVNAAGI 109 (267)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0051 Score=54.57 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++.....+ |..+ ..++.+.+.+.. .+++|+
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~ 85 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 85 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 5789999988 9999999999999999 8999999888765544 33222222 3322 122333333221 137999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|+++|.
T Consensus 86 lv~nAg~ 92 (270)
T 1yde_A 86 VVNNAGH 92 (270)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998873
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0046 Score=54.71 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|++|||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ .+.... .|..+ ..+..+.+.+.. .
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE-PDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS-TTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 89999998877654321 343332 23333 233333333322 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 379999998874
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=52.68 Aligned_cols=99 Identities=12% Similarity=0.200 Sum_probs=70.4
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.+..++.++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .++.. + + .
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d----~----~ 124 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-G----W----E 124 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-C----G----G
T ss_pred HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-C----h----h
Confidence 45666788999999999874 7788888887898 999999999988877653 321 12211 1 1 1
Q ss_pred HhcCCCccEEEEc-----CC---CHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFEC-----IG---NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g---~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++. +.+|+|+.. .+ ....+..+.+.|+++ |+++....
T Consensus 125 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 169 (287)
T 1kpg_A 125 QFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI 169 (287)
T ss_dssp GCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred hCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence 222 579999864 22 145688999999997 99887643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0028 Score=53.73 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=68.6
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~ 259 (379)
+.+...++++++||-+|+| .|..+..+++. +. +|++++.+++..+.+++ .|... ++..+. .+ ..
T Consensus 69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~---~~-- 138 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG--WQ---GW-- 138 (210)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GG---CC--
T ss_pred HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc--cc---CC--
Confidence 3455678899999999997 48888888888 66 99999999988877765 34332 222111 00 00
Q ss_pred hcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.||+|+....-......+.+.|+++ |+++..
T Consensus 139 ~~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~ 173 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLP 173 (210)
T ss_dssp GGGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEE
T ss_pred ccCCCccEEEEccchhhhhHHHHHhcccC-cEEEEE
Confidence 11237999998755545556788999997 988765
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=96.67 E-value=0.003 Score=55.31 Aligned_cols=79 Identities=29% Similarity=0.368 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce---EeCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~---v~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. .++... ..|..+ ..+..+.+.+.. .+++|
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 85 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN-PESIEAVLKAITDEFGGVD 85 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHCCCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5789999988 9999999999999999 8999999888765543 233221 223333 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 86 ~lv~nAg~ 93 (248)
T 3op4_A 86 ILVNNAGI 93 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999884
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.004 Score=53.48 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-----CCeEEEEcCChhHHHHHHhc----C-----Cc--eEeCCCCCCchHH
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-----ASRVIGIDIDPKKFDRAKNF----G-----VT--EFVNPKDHDKPIQ 254 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-----~~~vi~v~~~~~~~~~~~~l----g-----~~--~v~~~~~~~~~~~ 254 (379)
.++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++. + .+ .++..+. ...+.
T Consensus 77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~ 154 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI-YQVNE 154 (227)
T ss_dssp TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG-GGCCH
T ss_pred hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh-Hhccc
Confidence 578899999999976 888999999876 23899999999888777653 3 11 1222211 01110
Q ss_pred HHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 255 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 255 ~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.. ...+.||+|+........+..+.+.|+++ |+++..-.
T Consensus 155 ~~~--~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~ 194 (227)
T 2pbf_A 155 EEK--KELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE 194 (227)
T ss_dssp HHH--HHHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred ccC--ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence 000 11237999998766666678899999997 99886633
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0046 Score=55.23 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++.... .|..+ ..+..+.+.+.. .+++|
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS-LQDQKRAAERCLAAFGKID 81 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCCCC
Confidence 4789999988 9999999999999999 8999999988766544 3444332 22222 122223333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ~lvnnAg~ 89 (281)
T 3zv4_A 82 TLIPNAGI 89 (281)
T ss_dssp EEECCCCC
T ss_pred EEEECCCc
Confidence 99999873
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0041 Score=55.06 Aligned_cols=79 Identities=29% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEe---CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFV---NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++....+ |..+ ..++.+.+.+.. .+++|
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 103 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD-RKSIKQLAEVAEREMEGID 103 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS-HHHHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC-HHHHHHHHHHHHHHcCCCC
Confidence 5789999988 9999999999999999 899999988776544 455654322 2222 122322232221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 104 ~lvnnAg~ 111 (266)
T 3grp_A 104 ILVNNAGI 111 (266)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999885
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=55.84 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+.+|+|+|.|.+|..+++.++..|. .|++++.++++.+.+++.|...++-... +.+ .+++..-..+|+|+-+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat-~~~---~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDAT-RMD---LLESAGAAKAEVLINAID 77 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTT-CHH---HHHHTTTTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCC-CHH---HHHhcCCCccCEEEECCC
Confidence 35679999999999999999999999 8999999999999999998765442211 122 344432237999999998
Q ss_pred CHHHH---HHHHHHhccCCceEEEE
Q 016978 274 NVSVM---RAALECCHKGWGTSVIV 295 (379)
Q Consensus 274 ~~~~~---~~~~~~l~~~~G~iv~~ 295 (379)
....- -...+.+.+. -+++.-
T Consensus 78 ~~~~n~~i~~~ar~~~p~-~~Iiar 101 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPH-LQIIAR 101 (413)
T ss_dssp SHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred ChHHHHHHHHHHHHhCCC-CeEEEE
Confidence 85433 3333344453 455544
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0039 Score=55.23 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+.... .|..+ ..+..+.+.+.. .+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD-RHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHcC
Confidence 4689999988 9999999999999999 8999999887765443 2344332 23332 122333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 81 ~iD~lVnnAG~ 91 (264)
T 3tfo_A 81 RIDVLVNNAGV 91 (264)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0055 Score=52.88 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=51.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--CCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+. +++...++ |..+ ..++.+.+.+.. .+++|++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~id~l 82 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE-EGDWARAVAAMEEAFGELSAL 82 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 578999988 9999999999999999 8999999887765443 33322222 3322 123333333221 1379999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
|+++|.
T Consensus 83 i~~Ag~ 88 (234)
T 2ehd_A 83 VNNAGV 88 (234)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999873
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0091 Score=52.54 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHH----HHhcCCceE-e--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR----AKNFGVTEF-V--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~----~~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.+ .+++++.+. +++.+.... + |..+ ..+..+.+.+.. .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN-AAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4789999988 9999999999999999 78877 555554332 233444322 2 3222 122333333221 1
Q ss_pred CCccEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+++|++++++|.. .+.+.++..+.++ |++|.++.
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS 144 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG-GAIVTFSS 144 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEcC
Confidence 3799999988731 1233444455664 89998865
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.005 Score=54.67 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce---EeCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~---v~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.+++..+...|+ +|+++++++++.+.+. +.+... ..|..+ ..++.+.+.+.. .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND-ATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 8999999887655432 334322 123333 122333333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0046 Score=55.07 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc---CCceEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF---GVTEFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l---g~~~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++ +--.++ |..+ ..++.+.+.+.. .++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS-EAGARRLAQALGELSAR 105 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS-HHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC-HHHHHHHHHHHHHhcCC
Confidence 4789999988 9999999999999999 899999988765533 222 311122 2222 122222233221 247
Q ss_pred ccEEEEcCC
Q 016978 265 VDYSFECIG 273 (379)
Q Consensus 265 ~d~vid~~g 273 (379)
+|++|+++|
T Consensus 106 iD~lvnnAg 114 (276)
T 2b4q_A 106 LDILVNNAG 114 (276)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999999987
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.009 Score=54.09 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+.++|+..+ ++.+.+. ..|+|+.++
T Consensus 140 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~--------~l~ell~-----~aDvV~l~~ 204 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV--------DLETLLK-----ESDVVTIHV 204 (307)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC--------CHHHHHH-----HCSEEEECC
T ss_pred cCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc--------CHHHHHh-----hCCEEEEec
Confidence 357899999999999999999999999 89999988776 56667776421 1222222 378888876
Q ss_pred CCH----HHH-HHHHHHhccCCceEEEEcc
Q 016978 273 GNV----SVM-RAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~----~~~-~~~~~~l~~~~G~iv~~g~ 297 (379)
... ..+ ...+..++++ +.++.++-
T Consensus 205 p~~~~t~~li~~~~l~~mk~g-a~lin~ar 233 (307)
T 1wwk_A 205 PLVESTYHLINEERLKLMKKT-AILINTSR 233 (307)
T ss_dssp CCSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred CCChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence 642 222 3566778886 88887754
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0055 Score=53.58 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+... + .|..+ ..++.+.+.+.. .+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD-PESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 8999999987765443 234322 2 22222 122222222221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0057 Score=54.01 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++... . .|..+ ..++.+.+.+.. .+.+|
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 82 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 82 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHHcCCCc
Confidence 4689999988 9999999999999999 8999999988765543 343222 1 23332 122333333321 13699
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 83 ~lvnnAg~ 90 (263)
T 2a4k_A 83 GVAHFAGV 90 (263)
T ss_dssp EEEEGGGG
T ss_pred EEEECCCC
Confidence 99998874
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0063 Score=52.95 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC--ceEe--CCCCCC-chHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV--TEFV--NPKDHD-KPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~--~~v~--~~~~~~-~~~~~~i~~~~-- 261 (379)
.|+++||+|+ |++|...+..+...|+ +|+.+++++++.+.+. +.+. ..++ +.+..+ .++.+.+.+..
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 5789999988 9999999999999999 8999999987765443 2332 1222 221111 22222232221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 92 ~g~id~lv~nAg~ 104 (247)
T 3i1j_A 92 FGRLDGLLHNASI 104 (247)
T ss_dssp HSCCSEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 1379999998874
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0059 Score=53.91 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=53.7
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
-.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +.+.... .|..+ ..+..+.+.+.. .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD-DAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 36799999988 9999999999999999 8999999887765433 3344332 23332 122333333221 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 87 g~id~lv~nAg~ 98 (264)
T 3ucx_A 87 GRVDVVINNAFR 98 (264)
T ss_dssp SCCSEEEECCCS
T ss_pred CCCcEEEECCCC
Confidence 479999998864
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0027 Score=56.81 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c---CC-c-eE--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F---GV-T-EF--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l---g~-~-~v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ + +. . .. .|..+ ..++.+.+.+.. .
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD-PDQVAALFAAVRAEF 109 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 89999999877654432 2 21 1 22 23333 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 110 g~iD~lvnnAG~ 121 (281)
T 4dry_A 110 ARLDLLVNNAGS 121 (281)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999999874
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.013 Score=51.23 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=58.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh-------------------hHHHHHH----hcCCce-EeC-CCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP-------------------KKFDRAK----NFGVTE-FVN-PKDH 249 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~-------------------~~~~~~~----~lg~~~-v~~-~~~~ 249 (379)
+.+|+|+|+|++|..+++.+...|..+++.++.+. .|.+.+. ++.... +.. ....
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 110 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL 110 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 57999999999999999999999998999998876 5554432 333221 111 1111
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCce
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGT 291 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~ 291 (379)
..+ .+.+.. .++|+|++|+.+..+-..+...+... |.
T Consensus 111 ~~~---~~~~~~-~~~DvVi~~~d~~~~~~~l~~~~~~~-~~ 147 (249)
T 1jw9_B 111 DDA---ELAALI-AEHDLVLDCTDNVAVRNQLNAGCFAA-KV 147 (249)
T ss_dssp CHH---HHHHHH-HTSSEEEECCSSHHHHHHHHHHHHHH-TC
T ss_pred CHh---HHHHHH-hCCCEEEEeCCCHHHHHHHHHHHHHc-CC
Confidence 111 122221 25999999999876544455555443 54
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0054 Score=55.28 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=53.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcCCc--eEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVT--EFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg~~--~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.+++|+|+|+|++|.+++..+...|+.+|++++++.+|.+ ++++++.. .++ ++ +.+.+.. ..+|+||+
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~-------~~-~~~~~~~-~~aDivIn 210 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYF-------SL-AEAETRL-AEYDIIIN 210 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEE-------CH-HHHHHTG-GGCSEEEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCcee-------eH-HHHHhhh-ccCCEEEE
Confidence 5789999999999999999999999878999999988754 55556542 222 11 1222221 26999999
Q ss_pred cCCCH
Q 016978 271 CIGNV 275 (379)
Q Consensus 271 ~~g~~ 275 (379)
|++..
T Consensus 211 ~t~~~ 215 (297)
T 2egg_A 211 TTSVG 215 (297)
T ss_dssp CSCTT
T ss_pred CCCCC
Confidence 98863
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.005 Score=54.98 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h---cCCceEe---CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVTEFV---NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~---lg~~~v~---~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. + .+....+ |..+ .......+.+.. .+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD-EALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999999999 8999999987765443 2 2333322 2222 122222222221 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++++++|
T Consensus 85 ~iD~lvnnAg 94 (280)
T 3tox_A 85 GLDTAFNNAG 94 (280)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999988
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0061 Score=54.26 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++.+.... .|..+ ..++.+.+.+.. .+
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYG 98 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4689999988 9999999999999999 899999988765433 22344321 23322 122333333221 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 99 ~iD~lv~~Ag~ 109 (277)
T 2rhc_B 99 PVDVLVNNAGR 109 (277)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0051 Score=54.86 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCC---ce-E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV---TE-F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~---~~-v--~~~~~~~~~~~~~i~~~~- 261 (379)
.+++|||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.+. .. + .|..+ ..+..+.+.+..
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN-EDETARAVDAVTA 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC-HHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 899999988765433 33343 11 1 23322 122333333322
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 88 ~~g~id~lv~nAg~ 101 (281)
T 3svt_A 88 WHGRLHGVVHCAGG 101 (281)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 1379999999884
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0061 Score=54.38 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=62.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|||+|+ |.+|..+++.+... |+ +|+++.+++++.+.+...+...+ .|..+ . +.+.+... ++|+||.+++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN--Q---ESMVEAFK-GMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC--H---HHHHHHTT-TCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC--H---HHHHHHHh-CCCEEEEeCC
Confidence 5899998 99999999888887 88 89999898877554444454332 23332 2 22333322 6999999987
Q ss_pred CH-------HHHHHHHHHhccC-CceEEEEccCC
Q 016978 274 NV-------SVMRAALECCHKG-WGTSVIVGVAA 299 (379)
Q Consensus 274 ~~-------~~~~~~~~~l~~~-~G~iv~~g~~~ 299 (379)
.. .....+++.++.. -+++|.++...
T Consensus 75 ~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 75 IIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 51 2234455555543 14788887654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0065 Score=53.53 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCc-eE--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVT-EF--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~-~v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. ++... .+ .|..+ ..++.+.+.+.. .+++|
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~iD 83 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGLH 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999888999 8999999887765443 33221 12 23332 123333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 84 ~lv~~Ag~ 91 (260)
T 1nff_A 84 VLVNNAGI 91 (260)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0063 Score=53.63 Aligned_cols=79 Identities=22% Similarity=0.403 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +.|.... .|..+ ..++.+.+.+.. .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999999999999999 8999999887655432 2343322 23332 122322333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 84 ~id~lv~nAg~ 94 (262)
T 1zem_A 84 KIDFLFNNAGY 94 (262)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0065 Score=53.86 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+ ++.+... + .|..+ ...+.+.+.+.. .+
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC-HHHHHHHHHHHHHHCC
Confidence 4789999988 9999999999999999 899999988765533 2234432 2 23222 122333333221 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 79999999874
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0064 Score=52.95 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|...++.+...|+ +|+.+++++++.+.+. +.+.... .|..+ ..++.+.+.+.. .+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD-IESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 4689999988 9999999999989999 8999999887655433 3344332 23322 123333333322 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 82 ~id~li~~Ag~ 92 (247)
T 3lyl_A 82 AIDILVNNAGI 92 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0029 Score=54.46 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHHHhc
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~~~~ 261 (379)
.+..++++||-+|+| .|..++.+++.++ ..+|++++.+++..+.+++ .|.. .++. .+..+.+..+.
T Consensus 65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~-----~d~~~~~~~~~ 138 (229)
T 2avd_A 65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL-----KPALETLDELL 138 (229)
T ss_dssp HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE-----cCHHHHHHHHH
Confidence 345678999999997 7888899998764 3499999999988877764 3432 1221 22333333332
Q ss_pred C----CCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 D----GGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~----~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. +.+|+|+-.... ...+..+.+.|+++ |.++....
T Consensus 139 ~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 180 (229)
T 2avd_A 139 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV 180 (229)
T ss_dssp HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred hcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEECC
Confidence 1 479998854332 35688999999997 99887543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0052 Score=54.23 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcC-Cce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFG-VTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg-~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +.+ ... .+ |..+ ..++.+.+.+.. .
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD-RAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC-HHHHHHHHHHHHHHh
Confidence 4789999988 9999999999999999 8999999987755432 233 122 22 2222 122322232221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 87 g~id~lvnnAg~ 98 (262)
T 3pk0_A 87 GGIDVVCANAGV 98 (262)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999883
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0066 Score=54.27 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h---cCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N---FGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~---lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. + .+.... .|..+ ..+..+.+.+.. .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD-ELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 5789999988 9999999999999999 8999999887765443 2 233322 23322 122333333321 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 105 ~iD~lVnnAg~ 115 (283)
T 3v8b_A 105 HLDIVVANAGI 115 (283)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0048 Score=52.94 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.++++||+|+ +++|.+.++.+...|+ +|++++++++ .|..+ .....+.+.++ +++|++++++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~-~~~v~~~~~~~--g~id~lv~nA 67 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD-EKSVYHYFETI--GAFDHLIVTA 67 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC-HHHHHHHHHHH--CSEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC-HHHHHHHHHHh--CCCCEEEECC
Confidence 4688999988 9999999998888899 8999877654 23332 12333334333 5789999988
Q ss_pred CCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 273 GNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 273 g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|.. ...+.++..++++ |+++.++..
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~ 118 (223)
T 3uce_A 68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGM 118 (223)
T ss_dssp CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCG
T ss_pred CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecch
Confidence 741 1234444556665 899988754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0037 Score=54.19 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=61.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.+|||+|+ |.+|..+++.+...| + +|+++++++++.+.+...++..+ .|..+ .+ .+.+... ++|+||+++
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d--~~---~~~~~~~-~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN--HA---ALKQAMQ-GQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC--HH---HHHHHHT-TCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC--HH---HHHHHhc-CCCEEEEcC
Confidence 68999998 999999999999999 7 89999898876543322222221 22222 22 2223222 589999988
Q ss_pred CCHH---HHHHHHHHhccC-CceEEEEccC
Q 016978 273 GNVS---VMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 273 g~~~---~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
+... ..+.++..++.. .++||.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~ 126 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLSL 126 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence 8743 234455555442 2588888764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0036 Score=54.03 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=69.1
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC--c-e-EeCCCCCCchHHHHHHHhcC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV--T-E-FVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~--~-~-v~~~~~~~~~~~~~i~~~~~ 262 (379)
++...++++++||-+|+|. |..+..+++..|..+|++++.+++..+.+++... + . ++..+. .+.. ..... .
T Consensus 67 l~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~-~~~~~-~ 141 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQ-EYANI-V 141 (230)
T ss_dssp CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGG-GGTTT-S
T ss_pred ccccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC--CCcc-ccccc-C
Confidence 3445678899999999976 8888999998875599999999988877765321 1 1 221111 1100 00011 1
Q ss_pred CCccEEEEcCCCH----HHHHHHHHHhccCCceEEEE
Q 016978 263 GGVDYSFECIGNV----SVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 263 ~g~d~vid~~g~~----~~~~~~~~~l~~~~G~iv~~ 295 (379)
+.+|+|+.....+ ..+..+.+.|+++ |+++..
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence 4799999655543 3488889999997 998876
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0063 Score=53.96 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=53.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++.... .|..+ ..++.+.+.+.. .+++|
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 87 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN-EVSVRALIDFTIDTFGRLD 87 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999999999 899999988765544 34554332 23332 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 88 ~lv~nAg~ 95 (271)
T 3tzq_B 88 IVDNNAAH 95 (271)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0061 Score=54.32 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|.+++..+...|+ +|+++++++++.+.+. +.+.... .|..+ ..+..+.+.+.. .+
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS-TDEVHAAVAAAVERFG 100 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999889999 8999999887755432 3344332 23322 122323333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 101 ~id~lv~nAg~ 111 (279)
T 3sju_A 101 PIGILVNSAGR 111 (279)
T ss_dssp SCCEEEECCCC
T ss_pred CCcEEEECCCC
Confidence 79999999874
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.006 Score=58.65 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|... . ++.+.+ ...|+|+-++
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~-~-------~l~ell-----~~aDiVi~~~ 340 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV-V-------TMEYAA-----DKADIFVTAT 340 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE-C-------CHHHHT-----TTCSEEEECS
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe-C-------CHHHHH-----hcCCEEEECC
Confidence 578999999999999999999999999 9999999887754444556531 1 122222 2589999988
Q ss_pred CCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 273 GNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 273 g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
+....+ ...+..++++ ..++.+|-.
T Consensus 341 ~t~~lI~~~~l~~MK~g-AilINvgrg 366 (494)
T 3d64_A 341 GNYHVINHDHMKAMRHN-AIVCNIGHF 366 (494)
T ss_dssp SSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred CcccccCHHHHhhCCCC-cEEEEcCCC
Confidence 765544 4677889996 888888764
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0037 Score=54.50 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
.++++||+|+ |++|..+++.+.. |+ +|+++++++++.+.+.+......+..+-.+....+.+.+.. .+++|++++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~ 81 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH 81 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 3689999988 9999987777655 87 89999999888877766432222221100000000011111 137999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 82 ~Ag~ 85 (245)
T 3e9n_A 82 AAAV 85 (245)
T ss_dssp CC--
T ss_pred CCCc
Confidence 9885
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0043 Score=55.34 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC---ce-E--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV---TE-F--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~---~~-v--~~~~~~~~~~~~~i~~~~- 261 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+. .. + .|..+ ..++.+.+.+..
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 82 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC-HHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 8999999887665432 2232 22 2 23332 122222333221
Q ss_pred -CCCccEEEEcCC
Q 016978 262 -DGGVDYSFECIG 273 (379)
Q Consensus 262 -~~g~d~vid~~g 273 (379)
.+++|++|+++|
T Consensus 83 ~~g~iD~lv~nAg 95 (280)
T 1xkq_A 83 QFGKIDVLVNNAG 95 (280)
T ss_dssp HHSCCCEEEECCC
T ss_pred hcCCCCEEEECCC
Confidence 137999999887
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0094 Score=51.53 Aligned_cols=98 Identities=23% Similarity=0.288 Sum_probs=60.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC-CchHH---HHHHHhcC-CCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH-DKPIQ---QVLVDLTD-GGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~-~~~~~---~~i~~~~~-~g~d~ 267 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+ +....+..+-. ..++. +.+.+... +++|+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~ 75 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG 75 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence 3578999988 9999999999999999 8999988876532 11112211110 11222 22222222 47999
Q ss_pred EEEcCCC--------H---H---------------HHHHHHHHhccCCceEEEEccC
Q 016978 268 SFECIGN--------V---S---------------VMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 268 vid~~g~--------~---~---------------~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++++|. . + +.+.++..++++ |+++.++..
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~ 131 (236)
T 1ooe_A 76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA 131 (236)
T ss_dssp EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CEEEEECch
Confidence 9999882 1 0 134445556665 899988754
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0045 Score=54.59 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=52.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |++|..++..+...|+ +|+++++++++.+.+. +.+.... .|..+ ..++.+.+.+.. .+
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH-SDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence 5789999988 9999999999889999 8999999987765433 2343322 23322 122333333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|+++|.
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999875
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.01 Score=52.39 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++ ++++.+.+ ++.+.... .|..+ ...+.+.+.+.. .
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4689999988 9999999999999999 8888887 66654332 33454332 23322 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 98 ~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 98 GGLDFVMSNSGM 109 (274)
T ss_dssp SCEEEEECCCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0055 Score=53.87 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +.+.... .|..+ ..+..+.+.+.. .+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD-EQHREAVIKAALDQFG 88 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999998888999 8999999887655433 3344332 23222 122222232221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 89 ~id~lv~nAg~ 99 (256)
T 3gaf_A 89 KITVLVNNAGG 99 (256)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0059 Score=54.24 Aligned_cols=79 Identities=24% Similarity=0.257 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce-Ee--CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... ++ |..+ ..+..+.+.+.. .+++|
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 104 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD-PDSVRALFTATVEKFGRVD 104 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC-HHHHHHHHHHHHHHcCCCC
Confidence 4789999988 9999999999999999 899999988876544 3444322 22 3322 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 105 ~lVnnAg~ 112 (272)
T 4dyv_A 105 VLFNNAGT 112 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0072 Score=53.55 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCC--c-eEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV--T-EFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~--~-~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++++. . .++ |..+ ..++.+.+.+.. .++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 4789999988 9999999999989999 899998887765433 33432 1 122 3222 122333333221 137
Q ss_pred ccEEEEcCC
Q 016978 265 VDYSFECIG 273 (379)
Q Consensus 265 ~d~vid~~g 273 (379)
+|++|+++|
T Consensus 93 id~li~~Ag 101 (278)
T 2bgk_A 93 LDIMFGNVG 101 (278)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 999999887
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0077 Score=50.36 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=68.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCC-c--eEeCCCCCCchHHHHHHHhc
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGV-T--EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~-~--~v~~~~~~~~~~~~~i~~~~ 261 (379)
..++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++ .|. + .++..+- .+ +....
T Consensus 18 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~----~~~~~ 90 (197)
T 3eey_A 18 MFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH--QN----MDKYI 90 (197)
T ss_dssp HHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG--GG----GGGTC
T ss_pred hcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH--HH----Hhhhc
Confidence 4578899999999875 788888898875 2399999999988777764 333 1 1222221 11 11122
Q ss_pred CCCccEEEEcCCC---------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++.+|+|+-..+- ...+..+.+.|+++ |+++....
T Consensus 91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~ 140 (197)
T 3eey_A 91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIY 140 (197)
T ss_dssp CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEc
Confidence 3479998854422 25789999999997 99987643
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0057 Score=53.83 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHH-hc----CCceE-e--CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAK-NF----GVTEF-V--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~-~l----g~~~v-~--~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++ .+.+. ++ +.... + |..+ ..++.+.+.+..
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC-HHHHHHHHHHHHHh
Confidence 4689999988 9999999999999999 89999887765 44332 22 43322 2 2222 122333333221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 81 ~g~iD~lv~~Ag~ 93 (260)
T 1x1t_A 81 MGRIDILVNNAGI 93 (260)
T ss_dssp HSCCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 1379999999873
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0097 Score=52.25 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA 235 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~ 235 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 47 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET 47 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 4789999988 9999999998888999 899999988776544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=51.87 Aligned_cols=94 Identities=26% Similarity=0.477 Sum_probs=65.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-eEeCCCCCCchHHHHHHHhcCCCcc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
++++++||-+|+|. |.+++.+++ .|+ +|++++.++...+.+++ .+.. .++. .++.+. +..+.+|
T Consensus 118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~-----~d~~~~---~~~~~fD 186 (254)
T 2nxc_A 118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE-----GSLEAA---LPFGPFD 186 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE-----SCHHHH---GGGCCEE
T ss_pred cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE-----CChhhc---CcCCCCC
Confidence 67899999999865 777777666 688 99999999988777765 3432 1221 123222 2234799
Q ss_pred EEEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 267 YSFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 267 ~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+..... ...+..+.+.|+++ |+++..+.
T Consensus 187 ~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~ 219 (254)
T 2nxc_A 187 LLVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEee
Confidence 99964322 35678888899997 99988754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0081 Score=53.05 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCc-e-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVT-E-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~-~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ .+.. . . .|..+ ..+..+.+.+..
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD-ALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 4789999988 9999999999999999 89999998877554322 3322 2 1 23332 122222232221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2379999999884
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0057 Score=53.18 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ .+... ++ |..+ ..++.+.+.+.. .
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS-EESINKAFEEIYNLV 83 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC-HHHHHHHHHHHHHhc
Confidence 4689999988 9999999999888999 89999998876554322 34332 22 3222 123333333221 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 84 ~~~d~vi~~Ag~ 95 (248)
T 2pnf_A 84 DGIDILVNNAGI 95 (248)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999999873
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0064 Score=53.47 Aligned_cols=78 Identities=28% Similarity=0.407 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+. .++++... + .|..+ ..++.+.+.+.. .+++|
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~id 88 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-EKDVQTALALAKGKFGRVD 88 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHHCCCCC
Confidence 4789999988 9999999999999999 89999888766543 34455432 2 23222 123333333221 13799
Q ss_pred EEEEcCC
Q 016978 267 YSFECIG 273 (379)
Q Consensus 267 ~vid~~g 273 (379)
++|+++|
T Consensus 89 ~li~~Ag 95 (265)
T 2o23_A 89 VAVNCAG 95 (265)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999887
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0063 Score=58.24 Aligned_cols=92 Identities=29% Similarity=0.395 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
--.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.. +. ++.+.+ ...|+|+-+
T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~~-------~l~ell-----~~aDiVi~~ 319 (479)
T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV-------TLDEIV-----DKGDFFITC 319 (479)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC-------CHHHHT-----TTCSEEEEC
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-ec-------CHHHHH-----hcCCEEEEC
Confidence 3578999999999999999999999999 999999998875445556652 21 122221 258999988
Q ss_pred CCCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 272 IGNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 272 ~g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+....+ ...+..++++ ..++.+|-.
T Consensus 320 ~~t~~lI~~~~l~~MK~g-ailiNvgrg 346 (479)
T 1v8b_A 320 TGNVDVIKLEHLLKMKNN-AVVGNIGHF 346 (479)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred CChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence 7665544 3667778886 888888754
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0059 Score=53.63 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=47.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++++... + .|..+ ..+..+.+.+.. .+++|
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~id 83 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-EADATAALAFAKQEFGHVH 83 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHcCCCC
Confidence 5789999988 9999999999999999 899998887765443 3344322 2 22222 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 84 ~lv~nAg~ 91 (257)
T 3tpc_A 84 GLVNCAGT 91 (257)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998874
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0085 Score=52.49 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++.+... + .|..+ ..++.+.+.+.. .+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN-TESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHcC
Confidence 4789999988 9999999999999999 899999987765432 2334332 2 23222 122333333221 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++|+++|
T Consensus 90 ~id~vi~~Ag 99 (260)
T 3awd_A 90 RVDILVACAG 99 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0089 Score=53.21 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhHHH----HHHhcCCceEe---CCCCCCchH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFD----RAKNFGVTEFV---NPKDHDKPI 253 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------------~~~~~----~~~~lg~~~v~---~~~~~~~~~ 253 (379)
.|+++||+|+ |++|.+.++.+...|+ +|++++++ .++.+ .+++.+....+ |..+ ..+.
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v 86 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD-RAAL 86 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence 4789999988 9999999999999999 89999886 33322 23344544322 3322 1223
Q ss_pred HHHHHHhc--CCCccEEEEcCCC
Q 016978 254 QQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 254 ~~~i~~~~--~~g~d~vid~~g~ 274 (379)
.+.+.+.. .+++|++++++|.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~ 109 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGI 109 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 22333221 1379999999884
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.021 Score=49.33 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=68.7
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCc----eEeCCCCCCchHHHHHHHhcC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~----~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+...++||++||=+|+| .|..+..+|+..|. .+|++++.+++..+.+++.-.+ ..+..+..... .. ....
T Consensus 71 ~~l~ikpG~~VldlG~G-~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~---~~-~~~~ 145 (233)
T 4df3_A 71 IELPVKEGDRILYLGIA-SGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPE---KY-RHLV 145 (233)
T ss_dssp SCCCCCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGG---GG-TTTC
T ss_pred hhcCCCCCCEEEEecCc-CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcc---cc-cccc
Confidence 45679999999999986 48888899998875 4899999999988777653221 11211110011 00 1112
Q ss_pred CCccEEEEcCCCH----HHHHHHHHHhccCCceEEEE
Q 016978 263 GGVDYSFECIGNV----SVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 263 ~g~d~vid~~g~~----~~~~~~~~~l~~~~G~iv~~ 295 (379)
+.+|+||.....+ ..+..+.+.|+++ |++++.
T Consensus 146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~ 181 (233)
T 4df3_A 146 EGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA 181 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence 3789888655543 3577788899997 998865
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0066 Score=53.88 Aligned_cols=79 Identities=27% Similarity=0.351 Sum_probs=53.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceEe---CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFV---NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+ ++.|....+ |..+ ..+..+.+.+.. .+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS-ESEIIEAFARLDEQGI 102 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHCC
Confidence 4789999988 9999999999999999 899999988765443 234544332 2222 122333333221 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 103 ~iD~lv~nAg~ 113 (271)
T 4ibo_A 103 DVDILVNNAGI 113 (271)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.03 Score=50.03 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=60.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA-------ATPCEVVE-----SCPVTFAMLADP 68 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHh-----cCCEEEEEcCCH
Confidence 478999999999999999999998 89999999999888887776321 12333332 268888888765
Q ss_pred HHHHHHH-------HHhccCCceEEEEc
Q 016978 276 SVMRAAL-------ECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ~~~~~~~-------~~l~~~~G~iv~~g 296 (379)
..+...+ ..++++ ..++..+
T Consensus 69 ~~~~~v~~~~~~l~~~l~~~-~~vi~~s 95 (287)
T 3pef_A 69 AAAEEVCFGKHGVLEGIGEG-RGYVDMS 95 (287)
T ss_dssp HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence 4444444 445563 5555543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.01 Score=52.73 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh---cCCceE---eCCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN---FGVTEF---VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~---lg~~~v---~~~~~~~~~~~~~i~~~~--~~g 264 (379)
.|+++||+|+ |++|.++++.+...|+ +|++++++++..+.+++ .+.... .|..+ .+-.+.+.+.. .++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~g~ 106 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD--LEGAANVAEELAATRR 106 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC--HHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHhcCC
Confidence 4789999988 9999999999999999 89988876554444433 333221 23322 22222222211 147
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 107 iD~lv~nAg~ 116 (273)
T 3uf0_A 107 VDVLVNNAGI 116 (273)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 9999999874
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0087 Score=53.16 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhHHHH----HHhcCCceEe---CCCCCCchH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFDR----AKNFGVTEFV---NPKDHDKPI 253 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------------~~~~~~----~~~lg~~~v~---~~~~~~~~~ 253 (379)
.|+++||+|+ |++|.+.++.+...|+ +|++++++ +++.+. +++.+....+ |..+ ..++
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD-RESL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHH
Confidence 5789999988 9999999999999999 89998876 443332 2334543322 2222 1223
Q ss_pred HHHHHHhc--CCCccEEEEcCCC
Q 016978 254 QQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 254 ~~~i~~~~--~~g~d~vid~~g~ 274 (379)
.+.+.+.. .+++|++|+++|.
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 33333221 1379999999884
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0088 Score=52.45 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=51.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E--eCCCCCCchHHHHHHHhc--CCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F--VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g 264 (379)
++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+... + .|..+ ..++.+.+.+.. .++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCC
Confidence 578999988 9999999999999999 8999999887654332 234332 2 23332 122333333221 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|+++|.
T Consensus 80 id~lv~nAg~ 89 (256)
T 1geg_A 80 FDVIVNNAGV 89 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999998873
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.011 Score=52.49 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=51.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCC--ceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGV--TEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~--~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.+++++|+|+|++|.+++..+...|+.+|++++++.++.+. +++++. ..++...+ +....+|+||+
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~-----------l~~~~~DivIn 187 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA-----------LEGQSFDIVVN 187 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG-----------GTTCCCSEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH-----------hcccCCCEEEE
Confidence 68999999999999999998889997789999999887654 444543 12232221 11136999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
|++.
T Consensus 188 aTp~ 191 (272)
T 3pwz_A 188 ATSA 191 (272)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 9875
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0078 Score=53.41 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHH-hc----CCce-E--eCCCCCC----chHHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAK-NF----GVTE-F--VNPKDHD----KPIQQVLVD 259 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~~-~l----g~~~-v--~~~~~~~----~~~~~~i~~ 259 (379)
.++++||+|+ |++|..++..+...|+ +|+++++ ++++.+.+. ++ +... + .|..+ . ..+.+.+.+
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL-SSSLLDCCEDIIDC 87 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS-STTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC-ccccHHHHHHHHHH
Confidence 4689999988 9999999999999999 8999988 776654332 22 4332 2 23333 2 223333322
Q ss_pred hc--CCCccEEEEcCCC
Q 016978 260 LT--DGGVDYSFECIGN 274 (379)
Q Consensus 260 ~~--~~g~d~vid~~g~ 274 (379)
.. .+++|++|+++|.
T Consensus 88 ~~~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHhcCCCCEEEECCCC
Confidence 21 1379999999873
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0039 Score=54.72 Aligned_cols=76 Identities=17% Similarity=0.015 Sum_probs=50.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH---hcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK---NFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~---~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+.+... +..+ -..+.+.+.+.. +++|++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~-v~~~~~~~~~~~-g~iD~lv~ 78 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVS 78 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECHHH-HHHHHHHHHHHh-CCCCEEEE
Confidence 47899988 9999999999999999 8999988877655443 23443322 2211 122333333322 47999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 79 nAg~ 82 (254)
T 1zmt_A 79 NDIF 82 (254)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 8874
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0061 Score=54.81 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC-ce-E--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-TE-F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~-~~-v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +.+. .. + .|..+ ..+..+.+.+.. .
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD-PGSCADAARTVVDAF 117 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 8999999887654432 2331 11 2 23322 122222232221 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 118 g~iD~lvnnAg~ 129 (293)
T 3rih_A 118 GALDVVCANAGI 129 (293)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0071 Score=53.16 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++.+.... .|..+ ..++.+.+.+.. .+
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK-AEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 5789999988 9999999999999999 899999988765432 22343321 22222 122323333221 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++|+++|
T Consensus 91 ~iD~lv~~Ag 100 (260)
T 2zat_A 91 GVDILVSNAA 100 (260)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999887
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0081 Score=54.08 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCC-ce-E--eCCCCCC-chH---HHHHHH
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGV-TE-F--VNPKDHD-KPI---QQVLVD 259 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~-~~-v--~~~~~~~-~~~---~~~i~~ 259 (379)
..+++|||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++.+. .. + .|..+ . ... .+.+.+
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD-PIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS-CHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC-cHHHHHHHHHHHHH
Confidence 35789999988 9999999999889999 899999998765432 22232 11 2 23333 1 222 222322
Q ss_pred hcCCCccEEEEcCCC
Q 016978 260 LTDGGVDYSFECIGN 274 (379)
Q Consensus 260 ~~~~g~d~vid~~g~ 274 (379)
.. +++|++|+++|.
T Consensus 88 ~~-g~iD~lv~nAg~ 101 (311)
T 3o26_A 88 HF-GKLDILVNNAGV 101 (311)
T ss_dssp HH-SSCCEEEECCCC
T ss_pred hC-CCCCEEEECCcc
Confidence 22 379999999984
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0098 Score=53.56 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhHHH----HHHhcCCceE---eCCCCCCchH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFD----RAKNFGVTEF---VNPKDHDKPI 253 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------------~~~~~----~~~~lg~~~v---~~~~~~~~~~ 253 (379)
.|+++||+|+ +++|.+.++.+...|+ +|++++++ +++.+ .+++.|.... .|..+ ..+.
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v 104 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD-FDAM 104 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHH
Confidence 5789999988 9999999999999999 89988776 34333 2334554432 23322 1223
Q ss_pred HHHHHHhc--CCCccEEEEcCCC
Q 016978 254 QQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 254 ~~~i~~~~--~~g~d~vid~~g~ 274 (379)
.+.+.+.. .+++|++++++|.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 33333221 1479999998873
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0056 Score=56.50 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-----------HHHHHhcCCceE---eCCCCCCchHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-----------FDRAKNFGVTEF---VNPKDHDKPIQQVLV 258 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-----------~~~~~~lg~~~v---~~~~~~~~~~~~~i~ 258 (379)
.|++|||+|+ +++|.+.++.+...|+ +|+.+++++++ .+.+++.|.... .|..+ ..++.+.+.
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~ 121 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD-EQQISAAVE 121 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence 5799999988 9999999999989999 89999887653 233344554332 23333 122333333
Q ss_pred Hhc--CCCccEEEEcCCC
Q 016978 259 DLT--DGGVDYSFECIGN 274 (379)
Q Consensus 259 ~~~--~~g~d~vid~~g~ 274 (379)
+.. .+++|++|+++|.
T Consensus 122 ~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 322 1379999999884
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0077 Score=53.49 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=51.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
++++|+|+|+|++|.++++.+...|+ +|++++++.++.+ ++++++...-++..+. .+ +.+ +.+|+|++++
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~~-~~----~~~---~~~DivVn~t 188 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSM-DE----LEG---HEFDLIINAT 188 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCS-GG----GTT---CCCSEEEECC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEecH-HH----hcc---CCCCEEEECC
Confidence 58899999999999999999999997 9999999988764 4445543100111110 11 111 4799999999
Q ss_pred CCHH
Q 016978 273 GNVS 276 (379)
Q Consensus 273 g~~~ 276 (379)
+...
T Consensus 189 ~~~~ 192 (271)
T 1nyt_A 189 SSGI 192 (271)
T ss_dssp SCGG
T ss_pred CCCC
Confidence 8744
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0023 Score=58.28 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=69.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhc----CCce--EeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF----GVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~l----g~~~--v~~~~~~~~~~~~~i~ 258 (379)
+.+...++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++. |... ++..+- .+ ..
T Consensus 67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~--~~---~~- 139 (317)
T 1dl5_A 67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG--YY---GV- 139 (317)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GG---CC-
T ss_pred HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh--hh---cc-
Confidence 45566788999999999976 8888888887652 4799999999988777653 4332 221111 11 00
Q ss_pred HhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
...+.+|+|+....-......+.+.|+++ |+++..-
T Consensus 140 -~~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 175 (317)
T 1dl5_A 140 -PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI 175 (317)
T ss_dssp -GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred -ccCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence 01247999997755544457788899997 9988763
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.006 Score=54.28 Aligned_cols=79 Identities=28% Similarity=0.331 Sum_probs=53.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-E--eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-F--VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. +++... + .|..+ ...+.+.+.+.. .+++|
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD-GERIDVVAADVLARYGRVD 81 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC-HHHHHHHHHHHHHhCCCCC
Confidence 4689999988 9999999999999999 8999999887765443 444332 2 23322 122333333221 13799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 82 ~lv~~Ag~ 89 (281)
T 3m1a_A 82 VLVNNAGR 89 (281)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999884
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0091 Score=53.64 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc----CCce-Ee--CCCCCCchHHHHHHHh--cC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTE-FV--NPKDHDKPIQQVLVDL--TD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l----g~~~-v~--~~~~~~~~~~~~i~~~--~~ 262 (379)
.|++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+. ++ +... ++ |..+ ..++.+.+.+. ..
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 102 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 8999999887654332 22 4332 22 3222 12233333322 12
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+.+|++|+++|
T Consensus 103 g~id~li~~Ag 113 (302)
T 1w6u_A 103 GHPNIVINNAA 113 (302)
T ss_dssp CSCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47899999988
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0081 Score=52.89 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHH---HHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVL---VDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i---~~~~~ 262 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++.+... ++ |..+ ...+.+.+ .+...
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC-HHHHHHHHHHHHHHhC
Confidence 4689999988 9999999999999999 899999987765433 2234332 22 2222 12222222 22222
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 91 ~~id~li~~Ag~ 102 (266)
T 1xq1_A 91 GKLDILINNLGA 102 (266)
T ss_dssp TCCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 579999998874
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0068 Score=52.78 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=51.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-c--CChhHHHHHH-hc-CCceEeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-D--IDPKKFDRAK-NF-GVTEFVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~--~~~~~~~~~~-~l-g~~~v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
|+++||+|+ |++|.++++.+...|+ +|+++ + +++++.+.+. ++ +. .+.+..+ -..+.+.+.+.. +++|++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~-g~iD~l 76 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK-PERLVDATLQHG-EAIDTI 76 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC-GGGHHHHHGGGS-SCEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH-HHHHHHHHHHHc-CCCCEE
Confidence 468999988 9999999999999999 89998 6 8887765443 34 32 2333322 133444444332 479999
Q ss_pred EEcCC
Q 016978 269 FECIG 273 (379)
Q Consensus 269 id~~g 273 (379)
|+++|
T Consensus 77 v~~Ag 81 (244)
T 1zmo_A 77 VSNDY 81 (244)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99887
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.005 Score=54.29 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcC---CCeEEEEcCChhHHHHHHhc---CCce-E--eCCCCCCchHHHHHHH---h
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAG---ASRVIGIDIDPKKFDRAKNF---GVTE-F--VNPKDHDKPIQQVLVD---L 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g---~~~vi~v~~~~~~~~~~~~l---g~~~-v--~~~~~~~~~~~~~i~~---~ 260 (379)
++++|||+|+ |.+|..+++.+...| + +|++++++.++.+.++++ +... + .|..+ ...+.+.+.+ .
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGV 97 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC-hHHHHHHHHHHHHh
Confidence 4679999988 999999999998889 7 899998887654433332 3222 2 23222 2333333333 2
Q ss_pred cCC-CccEEEEcCCC
Q 016978 261 TDG-GVDYSFECIGN 274 (379)
Q Consensus 261 ~~~-g~d~vid~~g~ 274 (379)
.+. ++|++|+++|.
T Consensus 98 ~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 98 TKDQGLNVLFNNAGI 112 (267)
T ss_dssp HGGGCCSEEEECCCC
T ss_pred cCCCCccEEEECCCc
Confidence 222 59999999873
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0037 Score=53.76 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC------CeEEEEcCChhHHHHHHhc----C-------CceEeCCCCCCchH
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA------SRVIGIDIDPKKFDRAKNF----G-------VTEFVNPKDHDKPI 253 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~------~~vi~v~~~~~~~~~~~~l----g-------~~~v~~~~~~~~~~ 253 (379)
.++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++. + .-.++..+. .+
T Consensus 81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~- 156 (227)
T 1r18_A 81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG--RK- 156 (227)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG--GG-
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc--cc-
Confidence 478899999999975 8888888887763 3899999999887777642 1 111222211 10
Q ss_pred HHHHHHhcC-CCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 254 QQVLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 254 ~~~i~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.... +.||+|+...........+.+.|+++ |+++..
T Consensus 157 -----~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~ 193 (227)
T 1r18_A 157 -----GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP 193 (227)
T ss_dssp -----CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred -----CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEE
Confidence 1122 47999998766656678889999997 998764
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0092 Score=52.16 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=51.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce-E--eCCCCCCchHHHHHHHhcC--CCccEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE-F--VNPKDHDKPIQQVLVDLTD--GGVDYS 268 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~-v--~~~~~~~~~~~~~i~~~~~--~g~d~v 268 (379)
+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++... . .|..+ ..++.+.+.+... +++|++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN-RAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCCEE
Confidence 36889988 9999999999999999 8999999887765443 344322 2 23332 1334444444332 379999
Q ss_pred EEcCC
Q 016978 269 FECIG 273 (379)
Q Consensus 269 id~~g 273 (379)
++++|
T Consensus 79 vnnAg 83 (248)
T 3asu_A 79 VNNAG 83 (248)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99887
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.013 Score=53.06 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=61.3
Q ss_pred CEEEEEcCChHHHHHHHHHHH--cCCCeEEEEcCChhH--HHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEE
Q 016978 196 SIVAVFGLGTVGLAVAEGAKA--AGASRVIGIDIDPKK--FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFE 270 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~--~g~~~vi~v~~~~~~--~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid 270 (379)
-+|.|+|+|.+|...+..+.. -+.+-+.++++++++ +++++++|..... .++. .+.+.+.+ ++|+||+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~------~~~e-~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGVE-GLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHHH-HHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc------CCHH-HHHhccCCCCCcEEEE
Confidence 478999999999988888744 356344456666565 6777788864221 2232 33333333 7999999
Q ss_pred cCCCHHHHHHHHHHhcc--CCceEEE
Q 016978 271 CIGNVSVMRAALECCHK--GWGTSVI 294 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~--~~G~iv~ 294 (379)
|++.......+..++.. + ..+++
T Consensus 78 atp~~~h~~~a~~al~a~~G-k~Vi~ 102 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQAKPG-IRLID 102 (312)
T ss_dssp CSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred CCChHHHHHHHHHHHHhCCC-CEEEE
Confidence 99986667777777877 6 66655
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0079 Score=52.42 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++ ++++.+.+ ++.+.... .|..+ ..++.+.+.+.. .
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN-AEDVTNMVKQTVDVF 80 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4688999988 9999999999999999 8888887 66655432 23344322 23332 123333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 2uvd_A 81 GQVDILVNNAGV 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.01 Score=51.82 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=52.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCce--E--eCCCCCCchHHHHHHHhc-CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTE--F--VNPKDHDKPIQQVLVDLT-DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~--v--~~~~~~~~~~~~~i~~~~-~~g~d 266 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++++... . .|..+ ...+.+.+.+.. .+++|
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~id 87 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD-AEAMTAAAAEAEAVAPVS 87 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC-HHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC-HHHHHHHHHHHHhhCCCc
Confidence 4789999988 9999999999999999 899999988776543 3344322 1 23332 122222222211 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++|+++|.
T Consensus 88 ~li~~Ag~ 95 (254)
T 2wsb_A 88 ILVNSAGI 95 (254)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0061 Score=54.53 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-----------HHHHHhcCCceEe---CCCCCCchHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-----------FDRAKNFGVTEFV---NPKDHDKPIQQVLV 258 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-----------~~~~~~lg~~~v~---~~~~~~~~~~~~i~ 258 (379)
.++++||+|+ +++|.++++.+...|+ +|+.+++++++ .+.+++.+....+ |..+ ..+..+.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD-GDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS-HHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHH
Confidence 4789999988 9999999999888999 89999887652 2233344543322 3332 122333333
Q ss_pred Hhc--CCCccEEEEcCCC
Q 016978 259 DLT--DGGVDYSFECIGN 274 (379)
Q Consensus 259 ~~~--~~g~d~vid~~g~ 274 (379)
+.. .+++|++|+++|.
T Consensus 86 ~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 221 1379999999884
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=48.98 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=58.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+...+...+ .|..+ . +.+.+... ++|+||++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~--~---~~~~~~~~-~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ--A---ADVDKTVA-GQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS--H---HHHHHHHT-TCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC--H---HHHHHHHc-CCCEEEECcc
Confidence 68999998 9999999999998998 89999898776432211222221 12222 2 22333222 5899999988
Q ss_pred CHH----------HHHHHHHHhcc-CCceEEEEccC
Q 016978 274 NVS----------VMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 274 ~~~----------~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
... ....+++.+.+ +.++++.++..
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 522 13333444433 22578877654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0081 Score=52.64 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH--HHHHHhcCCceE-e--CCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNFGVTEF-V--NPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~--~~~~~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++ .+.+++.+.... + |..+ ..++.+.+.+.. .+++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~g~i 80 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDPAPALAEIARHGVKAVHHPADLSD-VAQIEALFALAEREFGGV 80 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTS-HHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4689999988 9999999999999999 89998887651 222333344332 2 2222 122333333221 1379
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 81 d~lv~~Ag~ 89 (255)
T 2q2v_A 81 DILVNNAGI 89 (255)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0075 Score=53.64 Aligned_cols=77 Identities=23% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchH---HHHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPI---QQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~---~~~i~~~~~ 262 (379)
.|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+ ++.+.... .|..+ ..+. .+.+.+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~-- 107 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE-AGAGTDLIERAEAI-- 107 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS-TTHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-HHHHHHHHHHHHHh--
Confidence 5789999988 9999999999999999 899998887654433 23344332 23222 1222 3333333
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 108 g~iD~lvnnAg~ 119 (275)
T 4imr_A 108 APVDILVINASA 119 (275)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 579999999884
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0056 Score=53.17 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhHHHHHHhc-CCce-E--eCCCCCCchHHHHHH---HhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNF-GVTE-F--VNPKDHDKPIQQVLV---DLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g--~~~vi~v~~~~~~~~~~~~l-g~~~-v--~~~~~~~~~~~~~i~---~~~~~ 263 (379)
.+++|||+|+ |.+|..+++.+...| + +|++++++.++.+.++++ +... + .|..+ ...+.+.+. +..+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC-DKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC-HHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC-HHHHHHHHHHHHHhcCC
Confidence 3678999988 999999999998899 7 899999998877766655 2222 2 22222 122222232 22221
Q ss_pred -CccEEEEcCCC
Q 016978 264 -GVDYSFECIGN 274 (379)
Q Consensus 264 -g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 80 ~~id~li~~Ag~ 91 (250)
T 1yo6_A 80 DGLSLLINNAGV 91 (250)
T ss_dssp GCCCEEEECCCC
T ss_pred CCCcEEEECCcc
Confidence 69999998863
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=52.28 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHH----hc-CCceE-e--CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAK----NF-GVTEF-V--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~~----~l-g~~~v-~--~~~~~~~~~~~~i~~~~-- 261 (379)
.++++||+|+ |++|...++.+...|+ +|+++++ ++++.+.+. +. +.... + |..+ ..++.+.+.+..
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK-PSEIADMMAMVADR 101 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC-HHHHHHHHHHHHHH
Confidence 4689999988 9999999999999999 8999987 444443322 22 33222 2 2222 122333333221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 102 ~g~iD~lv~nAg~ 114 (281)
T 3v2h_A 102 FGGADILVNNAGV 114 (281)
T ss_dssp TSSCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 2479999999884
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=51.77 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=52.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhcC-CCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLTD-GGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~~-~g~d~ 267 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +++.... .|..+ ..++.+.+.+... +++|+
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~~id~ 106 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS-EDSVLAAIEAANQLGRLRY 106 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHTTSSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhCCCCe
Confidence 4789999988 9999999999999999 8999999988765543 4554332 23322 1333344444321 37899
Q ss_pred EEEc
Q 016978 268 SFEC 271 (379)
Q Consensus 268 vid~ 271 (379)
++.+
T Consensus 107 lv~~ 110 (281)
T 3ppi_A 107 AVVA 110 (281)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9988
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0077 Score=51.53 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. -+. .++..+- .+ .+.+.+... ++|+||+++|.
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl--~d-~~~~~~~~~-~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADV--SS-LDEVCEVCK-GADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCT--TC-HHHHHHHHT-TCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecC--CC-HHHHHHHhc-CCCEEEEeCcC
Confidence 58999998 9999999999999998 9999999887643221 111 2222221 11 122333222 59999999886
Q ss_pred H-----------HHHHHHHHHhccC-CceEEEEccC
Q 016978 275 V-----------SVMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 275 ~-----------~~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
. .....+++.+... -.++|.++..
T Consensus 78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~ 113 (227)
T 3dhn_A 78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113 (227)
T ss_dssp ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence 3 1233445555542 1378888754
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.017 Score=52.33 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++. .++++|+.. . ++.+.+. ..|+|+.++
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~-~-------~l~ell~-----~aDvVvl~~ 204 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA-V-------SLEELLK-----NSDVISLHV 204 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE-C-------CHHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee-c-------CHHHHHh-----hCCEEEEec
Confidence 468899999999999999999999999 899999887764 456677642 1 1222232 378988887
Q ss_pred CCHH----HH-HHHHHHhccCCceEEEEcc
Q 016978 273 GNVS----VM-RAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~----~~-~~~~~~l~~~~G~iv~~g~ 297 (379)
.... .+ ...+..++++ +.++.++.
T Consensus 205 P~~~~t~~li~~~~l~~mk~g-a~lIn~ar 233 (313)
T 2ekl_A 205 TVSKDAKPIIDYPQFELMKDN-VIIVNTSR 233 (313)
T ss_dssp CCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred cCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence 6421 22 4566778885 77777754
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=52.89 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-h--------cCCce-E--eCCCCCCchHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-N--------FGVTE-F--VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~--------lg~~~-v--~~~~~~~~~~~~~i~~~ 260 (379)
.+++|||+|+ |.+|..++..+...|+ +|++++++.++.+.+. + .+... + .|..+ ...+.+.+.+.
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC-HHHHHHHHHHH
Confidence 4789999988 9999999999999999 8999999887654332 1 13222 1 23222 12233333332
Q ss_pred c--CCCccEEEEcCC
Q 016978 261 T--DGGVDYSFECIG 273 (379)
Q Consensus 261 ~--~~g~d~vid~~g 273 (379)
. .+++|++|+++|
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 1 136999999988
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.016 Score=50.81 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=52.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-Ee--CCCCCCchHHHHHHHh---cC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-FV--NPKDHDKPIQQVLVDL---TD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v~--~~~~~~~~~~~~i~~~---~~ 262 (379)
.++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +.+... .+ |..+ ..++.+.+.+. ..
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ-ESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 4689999988 9999999999999999 8999999887654332 224322 12 3322 12333333332 24
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+.+|++++++|
T Consensus 82 g~id~lvnnAg 92 (260)
T 2qq5_A 82 GRLDVLVNNAY 92 (260)
T ss_dssp TCCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 57999999984
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0093 Score=53.05 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-----hcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-----NFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-----~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.++++.++.+.+. ..+.... .|..+ ..+..+.+.+.. .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA-PPAVMAAVDQALKEF 103 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 5799999988 9999999999999999 8999999877644322 2243322 23332 122323333221 1
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++++++|
T Consensus 104 g~id~lv~nAg 114 (277)
T 4fc7_A 104 GRIDILINCAA 114 (277)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 37999999988
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.015 Score=51.35 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=60.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+++++|+|+|+.|.+++..+...|. +|+++.++.+|.+.+.+++.. +....+ +. .+|+||+|++.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~-----------l~--~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP-----------KS--AFDLIINATSA 182 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC-----------SS--CCSEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH-----------hc--cCCEEEEcccC
Confidence 8999999999999999999999995 999999998887655577743 333332 11 58999998764
Q ss_pred HH----HH--HHHHHHhccCCceEEEEc
Q 016978 275 VS----VM--RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 275 ~~----~~--~~~~~~l~~~~G~iv~~g 296 (379)
.. .+ ..+...++++ ..++++-
T Consensus 183 Gm~~~~~l~~~~l~~~l~~~-~~v~D~v 209 (269)
T 3phh_A 183 SLHNELPLNKEVLKGYFKEG-KLAYDLA 209 (269)
T ss_dssp CCCCSCSSCHHHHHHHHHHC-SEEEESC
T ss_pred CCCCCCCCChHHHHhhCCCC-CEEEEeC
Confidence 21 11 1122256664 6666553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0096 Score=51.80 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=50.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc----CCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF----GVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l----g~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+. ++ +... + .|..+ ..++.+.+.+.. .+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD-EGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhC
Confidence 578999988 9999999999989999 8999999887665432 22 3222 2 22222 122333333221 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
++|++|+++|
T Consensus 80 ~id~li~~Ag 89 (250)
T 2cfc_A 80 AIDVLVNNAG 89 (250)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999886
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.021 Score=51.79 Aligned_cols=76 Identities=11% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---hhHHHHH-Hhc----CCc-eEeCCCCCCchHHHHHHHhcCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRA-KNF----GVT-EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~---~~~~~~~-~~l----g~~-~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
-.|+++||+|+|++|.+++..+...|+++|+++.++ .++.+.+ +++ +.. .++...+ ..++.+.+.
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-~~~l~~~l~----- 225 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-HEQLRKEIA----- 225 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-HHHHHHHHH-----
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-HHHHHhhhc-----
Confidence 368999999999999999999999999889999998 6655433 222 221 2333332 011222221
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|+||+|++-
T Consensus 226 ~aDiIINaTp~ 236 (315)
T 3tnl_A 226 ESVIFTNATGV 236 (315)
T ss_dssp TCSEEEECSST
T ss_pred CCCEEEECccC
Confidence 48999998764
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0081 Score=53.35 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-------H----HHHHhcCCceE---eCCCCCCchHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------F----DRAKNFGVTEF---VNPKDHDKPIQQVLV 258 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-------~----~~~~~lg~~~v---~~~~~~~~~~~~~i~ 258 (379)
.|+++||+|+ +++|.++++.+...|+ +|+.++++.++ . +.+++.+.... .|..+ ..+..+.+.
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~ 82 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE-EDQVRAAVA 82 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC-HHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHH
Confidence 4789999988 9999999999999999 89999887643 1 22233344332 23332 122333333
Q ss_pred Hhc--CCCccEEEEcCCC
Q 016978 259 DLT--DGGVDYSFECIGN 274 (379)
Q Consensus 259 ~~~--~~g~d~vid~~g~ 274 (379)
+.. .+++|++++++|.
T Consensus 83 ~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASA 100 (274)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 322 1379999999884
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0073 Score=53.38 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcC--Cce-E--eCCCCCCchHHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFG--VTE-F--VNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg--~~~-v--~~~~~~~~~~~~~i~~~~~~ 263 (379)
.|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. +.+ ... . .|..+ .+..+.+.+. .+
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT--EQGCQDVIEK-YP 84 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS--HHHHHHHHHH-CC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC--HHHHHHHHHh-cC
Confidence 4789999988 9999999999999999 8999999887654332 222 211 1 12222 3333333332 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 85 ~id~lv~nAg~ 95 (267)
T 3t4x_A 85 KVDILINNLGI 95 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999884
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0095 Score=51.49 Aligned_cols=102 Identities=24% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcC---
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD--- 262 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~--- 262 (379)
...++++||-+|+| .|..++.+++.++ ..+|++++.+++..+.+++ .|....+.... .+..+.+.++..
T Consensus 69 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~~l~~l~~~~~ 145 (232)
T 3cbg_A 69 SLTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRL--GPALATLEQLTQGKP 145 (232)
T ss_dssp HHHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHHHHHHTSSS
T ss_pred HhcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhcCC
Confidence 34567899999987 7888999999874 2399999999998877764 34422111111 233333444322
Q ss_pred -CCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 263 -GGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 -~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.||+||-.... ...+..+.+.|+++ |.++.-.
T Consensus 146 ~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~ 182 (232)
T 3cbg_A 146 LPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN 182 (232)
T ss_dssp CCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 479999843322 35688899999996 9988653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.04 Score=49.60 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=54.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|...+. +..+ . -...|+||-|+..
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~e-----------~-~~~aDvvi~~vp~ 74 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASARE-----------F-AGVVDALVILVVN 74 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSSTT-----------T-TTTCSEEEECCSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHHH-----------H-HhcCCEEEEECCC
Confidence 579999999999999999889999 899999999999988888875422 2211 0 0146777777776
Q ss_pred HHHHHHHH
Q 016978 275 VSVMRAAL 282 (379)
Q Consensus 275 ~~~~~~~~ 282 (379)
+..+...+
T Consensus 75 ~~~~~~v~ 82 (303)
T 3g0o_A 75 AAQVRQVL 82 (303)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0078 Score=52.54 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ++.+... + .|..+ ...+.+.+.+.. .+
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 4789999988 9999999998888999 899999988765433 2234332 2 22222 122333333221 13
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.013 Score=52.31 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+++||+|+ +++|.+.++.+...|+ +|++++++
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~ 44 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC 44 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence 5789999988 9999999999999999 89998776
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.037 Score=49.57 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=61.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
+|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|... . .+..+.+. .+|+||.|+..+.
T Consensus 7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~D~vi~~v~~~~ 73 (299)
T 1vpd_A 7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---A----STAKAIAE-----QCDVIITMLPNSP 73 (299)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---C----SSHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---c----CCHHHHHh-----CCCEEEEECCCHH
Confidence 79999999999998888888898 8999999999888887776532 1 12323332 3799999998655
Q ss_pred HHHHHH-------HHhccCCceEEEEc
Q 016978 277 VMRAAL-------ECCHKGWGTSVIVG 296 (379)
Q Consensus 277 ~~~~~~-------~~l~~~~G~iv~~g 296 (379)
.+...+ ..++++ ..++.++
T Consensus 74 ~~~~~~~~~~~l~~~l~~~-~~vv~~s 99 (299)
T 1vpd_A 74 HVKEVALGENGIIEGAKPG-TVLIDMS 99 (299)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred HHHHHHhCcchHhhcCCCC-CEEEECC
Confidence 455444 456664 5666554
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0097 Score=52.68 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH----HHhcCCceE-e--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR----AKNFGVTEF-V--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~----~~~lg~~~v-~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|++|||+|+ |++|..+++.+...|+ +|+++++ +++..+. +++.+.... + |..+ ..+..+.+.+.. .
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS-ESDFIEAIQTIVQSD 105 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4789999988 9999999999889999 8888888 4444332 333454332 2 2222 123333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 106 g~id~li~nAg~ 117 (271)
T 4iin_A 106 GGLSYLVNNAGV 117 (271)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999884
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0089 Score=53.09 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=51.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCC--c-eE--eCCCCCCchHHHHHHHhcC--CCcc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV--T-EF--VNPKDHDKPIQQVLVDLTD--GGVD 266 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~--~-~v--~~~~~~~~~~~~~i~~~~~--~g~d 266 (379)
+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++.. . .. .|..+ ..++.+.+.+... +++|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD 99 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD-RAAMSAAVDNLPEEFATLR 99 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHTCCGGGSSCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 78999988 9999999999999999 8999999887765443 2321 1 12 23332 1333334443322 3689
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 100 ~lvnnAG~ 107 (272)
T 2nwq_A 100 GLINNAGL 107 (272)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998873
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0093 Score=52.07 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=69.3
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.....+.++++||-+|+|. |..+..+++..|. +|++++.+++..+.+++ .|.. .++..+- .++
T Consensus 28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~--~~~----- 98 (256)
T 1nkv_A 28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AGY----- 98 (256)
T ss_dssp HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TTC-----
T ss_pred HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh--HhC-----
Confidence 44556788999999999875 7888889988888 89999999988777654 3432 1222211 111
Q ss_pred HhcCCCccEEEEcC------CCHHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~~------g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
...+.||+|+-.. .....+..+.+.|+++ |+++...
T Consensus 99 -~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 140 (256)
T 1nkv_A 99 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE 140 (256)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred -CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence 0134799998521 2346688899999997 9988753
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.037 Score=50.08 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=54.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..+
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~~~~~~~~-----~aDvvi~~vp~~ 88 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC-------ESPAEVIK-----KCKYTIAMLSDP 88 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc-------CCHHHHHH-----hCCEEEEEcCCH
Confidence 589999999999999999999999 89999999999888888776321 12222332 267777777665
Q ss_pred HHHHHHH
Q 016978 276 SVMRAAL 282 (379)
Q Consensus 276 ~~~~~~~ 282 (379)
..+...+
T Consensus 89 ~~~~~v~ 95 (310)
T 3doj_A 89 CAALSVV 95 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=52.15 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCC--eEEEEcCChhHHHHHHh-c-----CCceE---eCCCCCCchHHHHHHHhc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGAS--RVIGIDIDPKKFDRAKN-F-----GVTEF---VNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~--~vi~v~~~~~~~~~~~~-l-----g~~~v---~~~~~~~~~~~~~i~~~~ 261 (379)
.|+++||+|+ |++|.+.+..+...|+. +|+.+++++++.+.+.+ + +.... .|..+ ..++.+.+.+..
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~ 110 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIENLP 110 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC-GGGHHHHHHTSC
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHH
Confidence 4789999988 99999988777666652 78889898887655432 1 33221 23333 244555555433
Q ss_pred C--CCccEEEEcCCC
Q 016978 262 D--GGVDYSFECIGN 274 (379)
Q Consensus 262 ~--~g~d~vid~~g~ 274 (379)
. +++|++++++|.
T Consensus 111 ~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 111 QEFKDIDILVNNAGK 125 (287)
T ss_dssp GGGCSCCEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 2 379999999873
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=51.92 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------ChhHHHHH----HhcCCceE---eCCCCCCch
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-------------DPKKFDRA----KNFGVTEF---VNPKDHDKP 252 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-------------~~~~~~~~----~~lg~~~v---~~~~~~~~~ 252 (379)
.|+++||+|+ +++|.++++.+...|+ +|+++++ ++++.+.+ ++.|.... .|..+ ..+
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~ 91 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD-DAA 91 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC-HHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHH
Confidence 5789999988 9999999999999999 8999876 45544333 33444332 23332 122
Q ss_pred HHHHHHHhc--CCCccEEEEcCCC
Q 016978 253 IQQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 253 ~~~~i~~~~--~~g~d~vid~~g~ 274 (379)
..+.+.+.. .+++|++++++|.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 333333221 2379999999884
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.025 Score=47.79 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
.+.++.+||-+|+|. |..+..+++. |+ ++++++.+++..+.+++.+... ++..+- .++ ...+.+|+|
T Consensus 43 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~--~~~------~~~~~~D~v 111 (218)
T 3ou2_A 43 AGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL--FDW------TPDRQWDAV 111 (218)
T ss_dssp TTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT--TSC------CCSSCEEEE
T ss_pred cCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc--ccC------CCCCceeEE
Confidence 367889999999864 7777777777 77 9999999999999998866322 222211 111 223489999
Q ss_pred EEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 269 FECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 269 id~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+-...- ...+..+.+.|+++ |.++....
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 147 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDV 147 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeC
Confidence 864321 35688889999997 99987754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.041 Score=50.01 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
..+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+ ...|+||-|+..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~~~~e~~-----~~aDvVi~~vp~ 97 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH-------EQARAAA-----RDADIVVSMLEN 97 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE-------SSHHHHH-----TTCSEEEECCSS
T ss_pred CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee-------CCHHHHH-----hcCCEEEEECCC
Confidence 4589999999999999999989999 89999999999888887776322 1222222 146888888876
Q ss_pred HHHHHHHH------HHhccCCceEEEEcc
Q 016978 275 VSVMRAAL------ECCHKGWGTSVIVGV 297 (379)
Q Consensus 275 ~~~~~~~~------~~l~~~~G~iv~~g~ 297 (379)
+..+...+ ..+.++ ..++..+.
T Consensus 98 ~~~~~~v~~~~~~~~~l~~~-~~vi~~st 125 (320)
T 4dll_A 98 GAVVQDVLFAQGVAAAMKPG-SLFLDMAS 125 (320)
T ss_dssp HHHHHHHHTTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHHHcchhHHhhCCCC-CEEEecCC
Confidence 54444444 245553 55555543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0071 Score=52.88 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |.+|..++..+...|+ +|++++++ +++.+.+ ++.+... ++ |..+ ..++.+.+.+.. .
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT-SEACQQLVDEFVAKF 83 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4689999988 9999999999888999 89999887 5554432 2234322 22 3222 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 84 g~id~vi~~Ag~ 95 (258)
T 3afn_B 84 GGIDVLINNAGG 95 (258)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0089 Score=52.23 Aligned_cols=75 Identities=25% Similarity=0.279 Sum_probs=49.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.++++||+|+ |++|...++.+...|+ +|++++++++. ++.+...+ .|..+ ..++.+.+.+.. .+++|++|
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~id~lv 79 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD-AAQVAQVCQRLLAETERLDALV 79 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC-HHHHHHHHHHHHHHCSCCCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999988 9999999999999999 89999887652 22342221 23332 123333333321 24799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 80 ~~Ag~ 84 (250)
T 2fwm_X 80 NAAGI 84 (250)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99874
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=51.70 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH--HHHH-H---hcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRA-K---NFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~--~~~~-~---~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
++++||+|+ |++|...++.+...|+ +|+++++++++ .+.+ + +.+.... .|..+ ..++.+.+.+.. .
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD-KANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 678999988 9999999988888899 89999887766 3322 2 2243321 23332 122323333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 80 g~iD~lv~nAg~ 91 (258)
T 3a28_C 80 GGFDVLVNNAGI 91 (258)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.014 Score=52.20 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDR 234 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~ 234 (379)
.++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~ 49 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA 49 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHH
Confidence 4789999988 9999999999999999 899998 88776543
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.013 Score=55.13 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=53.6
Q ss_pred cCC-CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhH----------------HHHHHhcCCceE-e--CCC
Q 016978 190 AKV-EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKK----------------FDRAKNFGVTEF-V--NPK 247 (379)
Q Consensus 190 ~~~-~~g~~VlI~Ga-g~vG~~a~~la~~-~g~~~vi~v~~~~~~----------------~~~~~~lg~~~v-~--~~~ 247 (379)
..+ +.++++||+|+ +++|++.+..+.. .|+ +|++++++.+. .+.+++.|.... + |..
T Consensus 55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvt 133 (422)
T 3s8m_A 55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAF 133 (422)
T ss_dssp CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCC
Confidence 344 35789999988 9999998887777 999 88888765432 144556675442 2 322
Q ss_pred CCCch---HHHHHHHhcCCCccEEEEcCCC
Q 016978 248 DHDKP---IQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 248 ~~~~~---~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+ ... +.+.+.+..+|++|++++++|.
T Consensus 134 d-~~~v~~~v~~i~~~~~G~IDiLVNNAG~ 162 (422)
T 3s8m_A 134 S-DAARAQVIELIKTEMGGQVDLVVYSLAS 162 (422)
T ss_dssp S-HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred C-HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence 2 122 3333444332689999998875
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0083 Score=55.53 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVT 241 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg~~ 241 (379)
-.|++|+|+|.|.+|..+++.+...|+ +|++.+.+.++.+ +++++|++
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~ 219 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD 219 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence 578999999999999999999999999 8999999888766 45556653
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.011 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------------hhHHH----HHHhcCCceEe---CCCCCCchH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------------PKKFD----RAKNFGVTEFV---NPKDHDKPI 253 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------------~~~~~----~~~~lg~~~v~---~~~~~~~~~ 253 (379)
.|+++||+|+ |++|.++++.+...|+ +|++++++ .++.+ .+++.+....+ |..+ ..++
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v 122 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD-LASL 122 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHHH
Confidence 5789999988 9999999999999999 88888765 33332 22344544322 3322 1223
Q ss_pred HHHHHHhc--CCCccEEEEcCCC
Q 016978 254 QQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 254 ~~~i~~~~--~~g~d~vid~~g~ 274 (379)
.+.+.+.. .+++|++|+++|.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 33333321 1379999999884
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.019 Score=51.92 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=70.0
Q ss_pred hhccC-CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHH
Q 016978 187 WNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 187 ~~~~~-~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~ 258 (379)
.+... ++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|.. .++..+- .++
T Consensus 109 ~~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~----- 179 (312)
T 3vc1_A 109 MDHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDT----- 179 (312)
T ss_dssp HTTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----
T ss_pred HHHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hcC-----
Confidence 34444 78999999999864 7788888887787 89999999988877764 3432 1222211 110
Q ss_pred HhcCCCccEEEEc-----CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFEC-----IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
....+.||+|+.. ......+..+.+.|+++ |+++....
T Consensus 180 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 222 (312)
T 3vc1_A 180 PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG 222 (312)
T ss_dssp CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 1123489999863 22356789999999997 99997754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.01 Score=53.98 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC----------hhHHH----HHHhcCCceEeCCCCC--CchHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID----------PKKFD----RAKNFGVTEFVNPKDH--DKPIQQV 256 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~----------~~~~~----~~~~lg~~~v~~~~~~--~~~~~~~ 256 (379)
.|+++||+|+ |++|.+.+..+...|+ +|++++++ .++.+ .+++.+....+..-+. ..+..+.
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 5789999988 9999999999999999 89998776 33332 2334454333222111 1222222
Q ss_pred HHHhc--CCCccEEEEcCCC
Q 016978 257 LVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 257 i~~~~--~~g~d~vid~~g~ 274 (379)
+.+.. .+++|++|+++|.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 33221 1379999999884
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.025 Score=52.47 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=63.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
-+|+|+|+|.+|..+++.+.. .. .|.+++++.++.+.+++......+|..+ .+ .+.+... +.|+|++|++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d--~~---~l~~~~~-~~DvVi~~~p~~ 88 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN--FD---KLVEVMK-EFELVIGALPGF 88 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC--HH---HHHHHHT-TCSEEEECCCGG
T ss_pred cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC--HH---HHHHHHh-CCCEEEEecCCc
Confidence 479999999999998877753 34 7888889999998887764433444433 22 2333222 589999999875
Q ss_pred HHHHHHHHHhccCCceEEEEc
Q 016978 276 SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ~~~~~~~~~l~~~~G~iv~~g 296 (379)
.....+-.|+..+ -.++.+.
T Consensus 89 ~~~~v~~~~~~~g-~~yvD~s 108 (365)
T 3abi_A 89 LGFKSIKAAIKSK-VDMVDVS 108 (365)
T ss_dssp GHHHHHHHHHHHT-CEEEECC
T ss_pred ccchHHHHHHhcC-cceEeee
Confidence 4455566666664 6677664
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.013 Score=49.96 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=60.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ .+. .++..+- .+..+.+.+... ++|+||+++|..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~--~d~~~~~~~~~~-~~d~vi~~ag~~ 74 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV--DWTPEEMAKQLH-GMDAIINVSGSG 74 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT--TSCHHHHHTTTT-TCSEEEECCCCT
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc--cCCHHHHHHHHc-CCCEEEECCcCC
Confidence 6999998 9999999999999998 999999988764322 122 2222221 121233444333 699999998853
Q ss_pred H---------HHHHHHHHhccC-CceEEEEccCC
Q 016978 276 S---------VMRAALECCHKG-WGTSVIVGVAA 299 (379)
Q Consensus 276 ~---------~~~~~~~~l~~~-~G~iv~~g~~~ 299 (379)
. ....+++.++.. .+++|.++...
T Consensus 75 ~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 75 GKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp TSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 1 123344444432 25888887653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.087 Score=41.97 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=51.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHHHh---cCCceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID-PKKFDRAKN---FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~-~~~~~~~~~---lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++|+|+|+|.+|...++.+...|. +|++++++ +++.+.+++ .|...+. -+. .+ .+.+.+..-.++|.|+-
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~-gd~--~~-~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIP-GDS--ND-SSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEE-SCT--TS-HHHHHHHTTTTCSEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEE-cCC--CC-HHHHHHcChhhCCEEEE
Confidence 4678999999999999999999998 89999886 455544432 3443332 221 11 22344332237999999
Q ss_pred cCCCHH
Q 016978 271 CIGNVS 276 (379)
Q Consensus 271 ~~g~~~ 276 (379)
+++...
T Consensus 78 ~~~~d~ 83 (153)
T 1id1_A 78 LSDNDA 83 (153)
T ss_dssp CSSCHH
T ss_pred ecCChH
Confidence 988843
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.024 Score=51.95 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.+.++|+.. .++.+.+. ..|+|+.++
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~--------~~l~~~l~-----~aDvVil~v 212 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF--------KPLEDLLR-----ESDFVVLAV 212 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE--------CCHHHHHH-----HCSEEEECC
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc--------CCHHHHHh-----hCCEEEECC
Confidence 357899999999999999999999999 89999998877 6666666531 12222232 368888877
Q ss_pred CCHH----HH-HHHHHHhccCCceEEEEc
Q 016978 273 GNVS----VM-RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 273 g~~~----~~-~~~~~~l~~~~G~iv~~g 296 (379)
.... .+ ...+..++++ ..++.++
T Consensus 213 p~~~~t~~~i~~~~~~~mk~~-ailIn~s 240 (334)
T 2dbq_A 213 PLTRETYHLINEERLKLMKKT-AILINIA 240 (334)
T ss_dssp CCCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence 6532 22 3456677775 6776664
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0094 Score=52.27 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++ ++++.+.+ ++.+... ++ |..+ ..++.+.+.+.. .
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4689999988 9999999998888999 8999888 66654432 2234332 22 2222 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 84 g~id~li~~Ag~ 95 (261)
T 1gee_A 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 369999998873
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=53.01 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHh--cCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDL--TDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~--~~~ 263 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+ ++.+.... .|..+ ...+.+.+.+. ..+
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK 120 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC-HHHHHHHHHHHHHhcC
Confidence 3689999988 9999999998888899 888888887665433 22344322 23332 12333333322 124
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 121 ~id~li~~Ag~ 131 (285)
T 2c07_A 121 NVDILVNNAGI 131 (285)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.01 Score=50.86 Aligned_cols=95 Identities=21% Similarity=0.214 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cC-----Cc--eEeCCCCCCchHHHHHHH
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG-----VT--EFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg-----~~--~v~~~~~~~~~~~~~i~~ 259 (379)
++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++ .| .+ .++..+. .. . .
T Consensus 75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~---~--~ 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG--RM---G--Y 146 (226)
T ss_dssp SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG--GG---C--C
T ss_pred CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc--cc---C--c
Confidence 77899999999975 8888889988763 289999999988877764 22 11 1222111 00 0 0
Q ss_pred hcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.||+|+........+..+.+.|+++ |+++..
T Consensus 147 ~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~ 181 (226)
T 1i1n_A 147 AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP 181 (226)
T ss_dssp GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEE
Confidence 11237999987766556678899999997 998865
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.01 Score=48.97 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=68.1
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCC-ceE-eCCCCCCchHHHHHHHh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGV-TEF-VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~-~~v-~~~~~~~~~~~~~i~~~ 260 (379)
.....+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++ .+. +.+ +.. .++.+.+..
T Consensus 26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~----~d~~~~~~~- 97 (192)
T 1l3i_A 26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME----GDAPEALCK- 97 (192)
T ss_dssp HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE----SCHHHHHTT-
T ss_pred HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEe----cCHHHhccc-
Confidence 4555678999999999976 88888888766 4 99999999988877765 343 111 111 223222211
Q ss_pred cCCCccEEEEcCC---CHHHHHHHHHHhccCCceEEEEc
Q 016978 261 TDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 261 ~~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.+|+|+.... -...+..+.+.|+++ |+++...
T Consensus 98 -~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~ 134 (192)
T 1l3i_A 98 -IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (192)
T ss_dssp -SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred -CCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 137999996543 146688888999996 9988653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.019 Score=51.12 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+ ++.|.... .|..+ ..+..+.+.+.. .
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD-LSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS-GGGHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 5789999988 9999999999999999 8888874 55544322 33444332 23332 233333333322 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 106 g~iD~lvnnAg~ 117 (280)
T 4da9_A 106 GRIDCLVNNAGI 117 (280)
T ss_dssp SCCCEEEEECC-
T ss_pred CCCCEEEECCCc
Confidence 379999999875
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.025 Score=51.94 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=61.1
Q ss_pred CEEEEEcCChHHHHHHHHHH-Hc-CCCeEE-EEcCChhHHH-HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 196 SIVAVFGLGTVGLAVAEGAK-AA-GASRVI-GIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~-~~-g~~~vi-~v~~~~~~~~-~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-+|.|+|+|.+|...++.++ .. ++ +++ ++++++++.+ +++++|...++. ++.+.+. ...+|+|+.|
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~~------~~~~~l~---~~~~D~V~i~ 78 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTYT------NYKDMID---TENIDAIFIV 78 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEES------CHHHHHT---TSCCSEEEEC
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCcccC------CHHHHhc---CCCCCEEEEe
Confidence 47899999999998877776 43 66 544 5678887765 445678754442 2322221 1269999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++.......+..++.. |+-|++..
T Consensus 79 tp~~~h~~~~~~al~~--G~~v~~eK 102 (346)
T 3cea_A 79 APTPFHPEMTIYAMNA--GLNVFCEK 102 (346)
T ss_dssp SCGGGHHHHHHHHHHT--TCEEEECS
T ss_pred CChHhHHHHHHHHHHC--CCEEEEcC
Confidence 9987667777887777 56565643
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.019 Score=51.01 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=50.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-------------ChhHHHHH----HhcCCceE---eCCCCCCch
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-------------DPKKFDRA----KNFGVTEF---VNPKDHDKP 252 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-------------~~~~~~~~----~~lg~~~v---~~~~~~~~~ 252 (379)
.|+++||+|+ +++|.++++.+...|+ +|+++++ ++++.+.+ ++.+.... .|..+ ..+
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~ 87 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD-FDR 87 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC-HHH
Confidence 5789999988 9999999999999999 8999877 44443322 23344332 23322 122
Q ss_pred HHHHHHHhc--CCCccEEEEcCCC
Q 016978 253 IQQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 253 ~~~~i~~~~--~~g~d~vid~~g~ 274 (379)
+.+.+.+.. .+++|++++++|.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 333333321 1379999999874
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=51.98 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+ ++.+.... .|..+ ..+..+.+.+.. .
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ-ESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4789999988 9999999999999999 7887766 55544332 33444332 23322 122322333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 105 g~id~lv~nAg~ 116 (269)
T 4dmm_A 105 GRLDVLVNNAGI 116 (269)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999875
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.027 Score=48.76 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.+.+|||+|+ |.+|..+++.+... |+ +|+++++++++.+.+ ..+...+ .|..+ . +.+.+... ++|+||
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD--A---DSINPAFQ-GIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS--H---HHHHHHHT-TCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC--H---HHHHHHHc-CCCEEE
Confidence 4678999988 99999999998888 77 899999988765443 1122222 22222 2 22333322 589999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 75 ~~a~~ 79 (253)
T 1xq6_A 75 ILTSA 79 (253)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 98873
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0089 Score=51.36 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC---c-eEeCCCCCCchHHHHHHHhc
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV---T-EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~---~-~v~~~~~~~~~~~~~i~~~~ 261 (379)
+.+...+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++... . .++..+. .+ .. ..
T Consensus 62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~--~~---~~--~~ 131 (231)
T 1vbf_A 62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--TL---GY--EE 131 (231)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GG---CC--GG
T ss_pred HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc--cc---cc--cc
Confidence 34556778999999999975 88888888874 5 99999999998888876422 1 2222211 11 00 01
Q ss_pred CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+|+|+....-......+.+.|+++ |+++..-.
T Consensus 132 ~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~ 166 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG 166 (231)
T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred CCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 247999997655445557788999997 99887643
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=51.97 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.+++|||+|+ |++|..+++.+...|+ +|+++++++++ .-.+.. ..|..+ ..++.+.+.+.. .+++|++|
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~iD~lv 79 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN-PDQVKASIDHIFKEYGSISVLV 79 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 4689999988 9999999999999999 89999887664 111211 123332 122333333221 13699999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 80 ~~Ag~ 84 (264)
T 2dtx_A 80 NNAGI 84 (264)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99873
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=51.76 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-C-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCC-ce-E--eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-G-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGV-TE-F--VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~-~~-v--~~~~~~~~~~~~~i~~~~-- 261 (379)
.+++|||+|+ | ++|..++..+...|+ +|+.+++++++.+.+. +.+. .. + .|..+ ..++.+.+.+..
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS-TEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 5789999988 6 799999999889999 8999999887654433 2222 11 2 23322 122333333221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+.+|++|+++|.
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 1379999999884
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.1 Score=44.60 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=59.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.|.+|||+|+|.+|...+..+...|+ +|++++.... .++.+.+.+.-..+. ...... .-.++|+||-++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~--------dL~~adLVIaAT 99 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKR-KKVGEE--------DLLNVFFIVVAT 99 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGG--------GSSSCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHh--------HhCCCCEEEECC
Confidence 47999999999999999999999999 7888865432 233332333222222 111111 013799999998
Q ss_pred CCHHHHHHHHHHhccCCceEEEEccC
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+. ++..+...++. |..|.....
T Consensus 100 ~d~~-~N~~I~~~ak~-gi~VNvvD~ 123 (223)
T 3dfz_A 100 NDQA-VNKFVKQHIKN-DQLVNMASS 123 (223)
T ss_dssp CCTH-HHHHHHHHSCT-TCEEEC---
T ss_pred CCHH-HHHHHHHHHhC-CCEEEEeCC
Confidence 8865 66666666664 888877553
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.012 Score=51.65 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=48.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE---eCCCCCCchHH---HHHHHhcCCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF---VNPKDHDKPIQ---QVLVDLTDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v---~~~~~~~~~~~---~~i~~~~~~g~d 266 (379)
.++++||+|+ +++|.+.++.+...|+ +|+++++..+ +..++++.... .|..+ ..+.. +.+.+ .+++|
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~--~g~id 81 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTD-EAAVASALDLAET--MGTLR 81 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTC-HHHHHHHHHHHHH--HSCEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCC-HHHHHHHHHHHHH--hCCCC
Confidence 4789999988 9999999999889999 8988887544 33444554332 23322 12222 22222 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ~lv~nAg~ 89 (257)
T 3tl3_A 82 IVVNCAGT 89 (257)
T ss_dssp EEEECGGG
T ss_pred EEEECCCC
Confidence 99999883
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0015 Score=54.13 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc--eEeCCCCCCchHHHHHHHhcCC
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT--EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~--~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
..+++|++||=+|+|. |..+..+++. +. +|++++.+++..+.+++ .|.+ .++. .+ ..+ +....++
T Consensus 18 ~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~-~~~----l~~~~~~ 88 (185)
T 3mti_A 18 EVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG-HEN----LDHYVRE 88 (185)
T ss_dssp TTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC-GGG----GGGTCCS
T ss_pred HhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc-HHH----HHhhccC
Confidence 4578899999998864 7788888877 66 99999999988777764 3432 2232 21 011 1122334
Q ss_pred CccEEEEcCCC---------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 264 GVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 264 g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.||+|+-..+. ...+..+.+.|+++ |+++....
T Consensus 89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 136 (185)
T 3mti_A 89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY 136 (185)
T ss_dssp CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 79998754221 13468888999997 99987643
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=53.49 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=49.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-----hhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-----PKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-----~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~ 260 (379)
.+++|||+|+ |++|..+++.+...|+ +|+++.++ +++.+.+ ++.+... . .|..+ ...+.+.+.+.
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~ 81 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS-QVSVDRAIDQI 81 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHH
Confidence 3678999988 9999999999999999 88887654 3333333 2334332 2 23322 12333333332
Q ss_pred c--CCCccEEEEcCC
Q 016978 261 T--DGGVDYSFECIG 273 (379)
Q Consensus 261 ~--~~g~d~vid~~g 273 (379)
. .+++|++++++|
T Consensus 82 ~~~~g~iD~lVnnAG 96 (324)
T 3u9l_A 82 IGEDGRIDVLIHNAG 96 (324)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 2 247999999988
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.01 Score=54.98 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCe-EEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASR-VIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~-vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-.|.+|.|+|.|.+|...++.++.+|+ + |++.+++..+.+.+.++|+..+ .++.+.+. ..|+|+.+
T Consensus 162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~ 228 (364)
T 2j6i_A 162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV-------ENIEELVA-----QADIVTVN 228 (364)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC-------SSHHHHHH-----TCSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec-------CCHHHHHh-----cCCEEEEC
Confidence 368999999999999999999999999 6 9999887766666666765321 12222222 36777766
Q ss_pred CCCH----HHH-HHHHHHhccCCceEEEEc
Q 016978 272 IGNV----SVM-RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 272 ~g~~----~~~-~~~~~~l~~~~G~iv~~g 296 (379)
+... ..+ ...+..++++ +.++.++
T Consensus 229 ~P~t~~t~~li~~~~l~~mk~g-a~lIn~a 257 (364)
T 2j6i_A 229 APLHAGTKGLINKELLSKFKKG-AWLVNTA 257 (364)
T ss_dssp CCCSTTTTTCBCHHHHTTSCTT-EEEEECS
T ss_pred CCCChHHHHHhCHHHHhhCCCC-CEEEECC
Confidence 5542 112 3345566664 6666554
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.019 Score=52.48 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA 235 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~ 235 (379)
.++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~ 87 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL 87 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence 4689999988 9999999999999999 899998 887765543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0099 Score=52.65 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcCCh-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT-VGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~-vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..+||+.......+.+..---.|++++|+|.|. +|..+++++...|+ +|+.+.+.. .
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t---------------------~ 196 (285)
T 3l07_A 139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFT---------------------T 196 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------S
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc---------------------h
Confidence 345555444554333332235899999999854 89999999999999 787774321 1
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.++ .+|+||.++|.+.++.. +.++++ ..++.+|..
T Consensus 197 ~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 235 (285)
T 3l07_A 197 DLKSHTT-----KADILIVAVGKPNFITA--DMVKEG-AVVIDVGIN 235 (285)
T ss_dssp SHHHHHT-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred hHHHhcc-----cCCEEEECCCCCCCCCH--HHcCCC-cEEEEeccc
Confidence 2333322 48999999998765432 457885 788888764
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.006 Score=53.42 Aligned_cols=94 Identities=26% Similarity=0.327 Sum_probs=57.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
++|||+|+ |++|..+++.+...|+ +|+++++++++.+. ....|..+ ...+.+.+.+. .+++|++|+++|.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl~~-~~~v~~~~~~~-~~~id~lv~~Ag~ 72 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAEGR-KQAIADVLAKC-SKGMDGLVLCAGL 72 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHTTC-TTCCSEEEECCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCCCC-HHHHHHHHHHh-CCCCCEEEECCCC
Confidence 47899988 9999999999999999 89999887654211 10001111 01122222222 2478999999875
Q ss_pred HH------------------HHHHHHHHhcc-CCceEEEEccC
Q 016978 275 VS------------------VMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 275 ~~------------------~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
.. +.+.++..+.+ +.|++|.++..
T Consensus 73 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~ 115 (257)
T 1fjh_A 73 GPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV 115 (257)
T ss_dssp CTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred CCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence 22 23444444433 23899988764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=51.96 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=68.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhc-----CCce--EeCCCCCCchHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNF-----GVTE--FVNPKDHDKPIQQV 256 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~l-----g~~~--v~~~~~~~~~~~~~ 256 (379)
+.....+.++++||-+|+| .|..+..+++.. +. +|++++.+++..+.+++. |.+. ++..+- .+
T Consensus 102 ~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~--~~---- 173 (275)
T 1yb2_A 102 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI--AD---- 173 (275)
T ss_dssp ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT--TT----
T ss_pred HHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch--hc----
Confidence 3455678899999999987 577888888874 45 999999999988877653 5332 222211 11
Q ss_pred HHHhcCCCccEEEEcCCC-HHHHHHHHHHhccCCceEEEEcc
Q 016978 257 LVDLTDGGVDYSFECIGN-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 257 i~~~~~~g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
....+.+|+|+-.... ...+..+.+.|+++ |+++....
T Consensus 174 --~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 212 (275)
T 1yb2_A 174 --FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 212 (275)
T ss_dssp --CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred --cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 1122379999865444 35688899999997 99887754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.025 Score=50.16 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH-HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
...+.+|||+|+|+.|.+++..+...|+++|+++.++.+|. +++++++.+ ... + . . ...+|+||+
T Consensus 116 ~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~--~-------~--~~~~DivIn 181 (271)
T 1npy_A 116 LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S--L-------E--NQQADILVN 181 (271)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C--C-------T--TCCCSEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h--h-------h--cccCCEEEE
Confidence 44678999999999999999999999987899999998774 455556642 110 1 0 0 126899999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
|++.
T Consensus 182 aTp~ 185 (271)
T 1npy_A 182 VTSI 185 (271)
T ss_dssp CSST
T ss_pred CCCC
Confidence 9876
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.045 Score=51.51 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=62.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC--CeEEEEcCChhHHHHHH-hcC------Cce-EeCCCCCCchHHHHHHHhcCCCc
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRAK-NFG------VTE-FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~--~~vi~v~~~~~~~~~~~-~lg------~~~-v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.+|+|+|+|.+|..+++.+...|. ..|++++++.++.+.+. +++ ... .+|..+ ..++.+.+.+. ++
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d-~~~l~~~l~~~---~~ 77 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS-IEELVALINEV---KP 77 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC-HHHHHHHHHHH---CC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC-HHHHHHHHHhh---CC
Confidence 379999999999999988888773 38999999988866543 332 221 223222 13333344332 58
Q ss_pred cEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 266 DYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 266 d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+|+++++.......+..++..+ -.++.+..
T Consensus 78 DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~ 108 (405)
T 4ina_A 78 QIVLNIALPYQDLTIMEACLRTG-VPYLDTAN 108 (405)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred CEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence 99999998754455555666664 55555533
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.011 Score=52.48 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=63.7
Q ss_pred cccccchhhhhhhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCch
Q 016978 174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~ 252 (379)
..||+.......+.+..---.|++++|+|.| .+|..+++++...|+ +|+.+.+.. .+
T Consensus 139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t---------------------~~ 196 (285)
T 3p2o_A 139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT---------------------KD 196 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------SC
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc---------------------hh
Confidence 3455444444433333233589999999985 589999999999999 788874322 12
Q ss_pred HHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 253 IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 253 ~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+.++ .+|+||.++|.+.++. .+.++++ ..++.+|..
T Consensus 197 L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~ 234 (285)
T 3p2o_A 197 LSLYTR-----QADLIIVAAGCVNLLR--SDMVKEG-VIVVDVGIN 234 (285)
T ss_dssp HHHHHT-----TCSEEEECSSCTTCBC--GGGSCTT-EEEEECCCE
T ss_pred HHHHhh-----cCCEEEECCCCCCcCC--HHHcCCC-eEEEEeccC
Confidence 322222 4899999999876543 2557885 888888864
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.01 Score=52.55 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccE
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~ 267 (379)
...|++|||+|+ |++|.++++.+...|+ +|+++++++++.. . .... ..|..+ ..+..+.+.+.. .+++|+
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~-~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD~ 84 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV---N-VSDHFKIDVTN-EEEVKEAVEKTTKKYGRIDI 84 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT---T-SSEEEECCTTC-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc---C-ceeEEEecCCC-HHHHHHHHHHHHHHcCCCCE
Confidence 456899999988 9999999999999999 8999988766431 1 1111 123333 122333333221 137999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+++++|.
T Consensus 85 lv~nAg~ 91 (269)
T 3vtz_A 85 LVNNAGI 91 (269)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9999874
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.019 Score=52.50 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+.++|+.. . ++.+.+. ..|+|+.++
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~----~----~l~ell~-----~aDvV~l~~ 227 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ----L----PLEEIWP-----LCDFITVHT 227 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE----C----CHHHHGG-----GCSEEEECC
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee----C----CHHHHHh-----cCCEEEEec
Confidence 468899999999999999999999999 89999887665 4566777642 1 1222221 478888876
Q ss_pred CCHH----HH-HHHHHHhccCCceEEEEcc
Q 016978 273 GNVS----VM-RAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~----~~-~~~~~~l~~~~G~iv~~g~ 297 (379)
.... .+ ...+..++++ +.++.++-
T Consensus 228 P~t~~t~~li~~~~l~~mk~g-ailIN~ar 256 (335)
T 2g76_A 228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCAR 256 (335)
T ss_dssp CCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred CCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence 6522 22 3567778886 88887765
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=53.84 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+..+ .++.+.+. ..|+|+-++
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDvV~l~~ 228 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV-------EDLNEMLP-----KCDVIVINM 228 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC-------SCHHHHGG-----GCSEEEECS
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc-------CCHHHHHh-----cCCEEEECC
Confidence 358999999999999999999999999 89999988766667777776422 12222221 367777665
Q ss_pred CCH----HHH-HHHHHHhccCCceEEEEc
Q 016978 273 GNV----SVM-RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 273 g~~----~~~-~~~~~~l~~~~G~iv~~g 296 (379)
... ..+ ...+..|+++ ..+|.++
T Consensus 229 Plt~~t~~li~~~~l~~mk~g-ailIN~a 256 (351)
T 3jtm_A 229 PLTEKTRGMFNKELIGKLKKG-VLIVNNA 256 (351)
T ss_dssp CCCTTTTTCBSHHHHHHSCTT-EEEEECS
T ss_pred CCCHHHHHhhcHHHHhcCCCC-CEEEECc
Confidence 521 111 4455667774 6666554
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=50.76 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH---cCCCeEEEEcCChhHHHHHH-hc-----CCce-E--eCCCCCCchHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKA---AGASRVIGIDIDPKKFDRAK-NF-----GVTE-F--VNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~---~g~~~vi~v~~~~~~~~~~~-~l-----g~~~-v--~~~~~~~~~~~~~i~~~ 260 (379)
.++++||+|+ |++|.+.+..+.. .|+ +|+++++++++.+.+. ++ +... . .|..+ ..++.+.+.+.
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~ 82 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT-EAGVQRLLSAV 82 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS-HHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC-HHHHHHHHHHH
Confidence 3678999988 9999998887777 899 8999999887655433 22 3322 1 23332 12333334333
Q ss_pred ----cCCCcc--EEEEcCC
Q 016978 261 ----TDGGVD--YSFECIG 273 (379)
Q Consensus 261 ----~~~g~d--~vid~~g 273 (379)
..+.+| ++++++|
T Consensus 83 ~~~~~~g~~d~~~lvnnAg 101 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAA 101 (259)
T ss_dssp HHSCCCTTCCEEEEEECCC
T ss_pred HhccccccCCccEEEECCc
Confidence 223678 9999876
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=52.15 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=60.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|||+|+ |.+|..+++.+... |+ +|+++++++++.+.+...+...+. |..+ . +.+.+... ++|+||+++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi~~a 74 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ--P---ESLQKAFA-GVSKLLFIS 74 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC--H---HHHHHHTT-TCSEEEECC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC--H---HHHHHHHh-cCCEEEEcC
Confidence 5899988 99999998888877 88 899998887766555544544332 2322 2 22333322 689999998
Q ss_pred CCH-------HHHHHHHHHhccC-CceEEEEccC
Q 016978 273 GNV-------SVMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 273 g~~-------~~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
+.. .....+++.+... -+++|.++..
T Consensus 75 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 75 GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred CCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 741 1233444444442 1478877653
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.042 Score=49.70 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC---hhHHHHH-Hhc----CCc-eEeCCCCCCchH-HHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID---PKKFDRA-KNF----GVT-EFVNPKDHDKPI-QQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~---~~~~~~~-~~l----g~~-~v~~~~~~~~~~-~~~i~~~~~~ 263 (379)
.++++||+|+|+.|.+++..+...|+++|+++.++ .+|.+.+ +++ +.. .++...+ .++ .+.+.
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~--l~~~~~~l~----- 219 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD--QHAFTEALA----- 219 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh--hhhhHhhcc-----
Confidence 58899999999999999999999999889999999 5554433 222 221 1232322 111 12222
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|+||+|++.
T Consensus 220 ~~DiIINaTp~ 230 (312)
T 3t4e_A 220 SADILTNGTKV 230 (312)
T ss_dssp HCSEEEECSST
T ss_pred CceEEEECCcC
Confidence 48999998765
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.014 Score=50.63 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHH----HHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDR----AKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~----~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |.+|..+++.+...|+ +|+++ .+++++.+. +++.+.... .|..+ ...+.+.+.+.. .
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN-PEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHhc
Confidence 4689999988 9999999999999999 88888 555554432 233344322 23322 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 82 ~~~d~vi~~Ag~ 93 (247)
T 2hq1_A 82 GRIDILVNNAGI 93 (247)
T ss_dssp SCCCEEEECC--
T ss_pred CCCCEEEECCCC
Confidence 379999999875
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=50.20 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEe--CCCCCCchHHHHHHHhc-
Q 016978 192 VEPGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV--NPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~--~~~~~~~~~~~~i~~~~- 261 (379)
..++++|||+|+ +++|..+++.+...|+ +|+.++++++..+.++ +.+...++ |..+ ..+....+.+..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD-DAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC-HHHHHHHHHHHHH
Confidence 456899999974 6999999999999999 8999988765444333 33432222 2222 122333333221
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++|+++|.
T Consensus 89 ~~g~id~lv~nAg~ 102 (271)
T 3ek2_A 89 HWDSLDGLVHSIGF 102 (271)
T ss_dssp HCSCEEEEEECCCC
T ss_pred HcCCCCEEEECCcc
Confidence 2479999998873
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.022 Score=51.76 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------ChhHHH----HHHhcCCceEeCCCCCCchHHHH---
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI---------DPKKFD----RAKNFGVTEFVNPKDHDKPIQQV--- 256 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~---------~~~~~~----~~~~lg~~~v~~~~~~~~~~~~~--- 256 (379)
.|+++||+|+ |++|..+++.+...|+ +|+++++ +.++.+ .+++.+...+.|..+. .+..+.
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~-~~~~~~~~~ 85 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSV-EAGEKLVKT 85 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCG-GGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCH-HHHHHHHHH
Confidence 4789999988 9999999999999999 8888643 444433 2333454445555441 222222
Q ss_pred HHHhcCCCccEEEEcCC
Q 016978 257 LVDLTDGGVDYSFECIG 273 (379)
Q Consensus 257 i~~~~~~g~d~vid~~g 273 (379)
+.+. .+++|++|+++|
T Consensus 86 ~~~~-~g~iD~lVnnAG 101 (319)
T 1gz6_A 86 ALDT-FGRIDVVVNNAG 101 (319)
T ss_dssp HHHH-TSCCCEEEECCC
T ss_pred HHHH-cCCCCEEEECCC
Confidence 3332 247999999987
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.015 Score=50.34 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH----HhcCCce-E-e--CCCCCCchHHHHHHHhc--C
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTE-F-V--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~----~~lg~~~-v-~--~~~~~~~~~~~~i~~~~--~ 262 (379)
+++|||+|+ |.+|..+++.+...|+ +|+++ ++++++.+.+ ++.+... . + |..+ ...+.+.+.+.. .
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 78 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE-AEAATALVHQAAEVL 78 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC-HHHHHHHHHHHHHhc
Confidence 468999988 9999999998888999 88887 7887765433 2234332 1 2 3322 122222222221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 79 ~~~d~li~~Ag~ 90 (245)
T 2ph3_A 79 GGLDTLVNNAGI 90 (245)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.029 Score=48.94 Aligned_cols=101 Identities=17% Similarity=0.295 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc---
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT--- 261 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~--- 261 (379)
...++++||-+|+| .|..++.+|+.+ +. +|++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 76 ~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~~ 151 (247)
T 1sui_A 76 KLINAKNTMEIGVY-TGYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMIKDE 151 (247)
T ss_dssp HHTTCCEEEEECCG-GGHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHSG
T ss_pred HhhCcCEEEEeCCC-cCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHhcc
Confidence 34567899999885 577888889887 45 99999999988777764 34421111110 12333333321
Q ss_pred --CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 262 --DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 --~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.||+||-.... ...+..+.+.|+++ |.++.-.
T Consensus 152 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~ 190 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN 190 (247)
T ss_dssp GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence 3479998843322 46688899999997 9988643
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.024 Score=52.29 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=61.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+..+ .++.+.+.+ .|+|+-++.
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~-------~~l~ell~~-----aDiV~l~~P 224 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA-------ESKDALFEQ-----SDVLSVHLR 224 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC-------SSHHHHHHH-----CSEEEECCC
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe-------CCHHHHHhh-----CCEEEEecc
Confidence 58899999999999999999999999 999998775 4455666776421 123333332 688887664
Q ss_pred CH----HH-HHHHHHHhccCCceEEEEc
Q 016978 274 NV----SV-MRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 274 ~~----~~-~~~~~~~l~~~~G~iv~~g 296 (379)
.. .. -...+..++++ ..+|.++
T Consensus 225 lt~~t~~li~~~~l~~mk~g-ailIN~a 251 (352)
T 3gg9_A 225 LNDETRSIITVADLTRMKPT-ALFVNTS 251 (352)
T ss_dssp CSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred CcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence 31 11 13566777885 7777776
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.033 Score=53.40 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=57.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHh-cCCce-EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN-FGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~-lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
++.+|+|+|+|.+|..++..+... |. +|++++++.++.+.+.+ .+... .++..+ ..++.+.+. ++|+|++
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d-~~~l~~~l~-----~~DvVIn 94 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD-DSALDKVLA-----DNDVVIS 94 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC-HHHHHHHHH-----TSSEEEE
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC-HHHHHHHHc-----CCCEEEE
Confidence 357899999999999988888877 66 89999999888665543 34322 223322 112222221 5899999
Q ss_pred cCCCHHHHHHHHHHhccCCceEEE
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~ 294 (379)
|++..........++..+ -.++.
T Consensus 95 ~tp~~~~~~v~~a~l~~g-~~vvd 117 (467)
T 2axq_A 95 LIPYTFHPNVVKSAIRTK-TDVVT 117 (467)
T ss_dssp CSCGGGHHHHHHHHHHHT-CEEEE
T ss_pred CCchhhhHHHHHHHHhcC-CEEEE
Confidence 988743223333445553 44443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.034 Score=44.95 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHH-hcCCCccEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVD-LTDGGVDYSF 269 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~-~~~~g~d~vi 269 (379)
++++++||-+|+|. |..+..+++..|. .++++++.++ ..+. ..-.++..+-......+.+.. ...+.+|+|+
T Consensus 20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~ 93 (180)
T 1ej0_A 20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccccchhhhhhhccCCCCceeEEE
Confidence 67899999999976 8888888888743 3999998887 3221 111222222211222223333 2334899999
Q ss_pred E-----cCCC------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 270 E-----CIGN------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 270 d-----~~g~------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
. ..+. ...+..+.+.|+++ |+++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 137 (180)
T 1ej0_A 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF 137 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 7 2333 36688889999997 99987644
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.067 Score=48.46 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=63.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+|.|+|+|.+|...++.++..|.. +|++.++++++.+.++++|... .....+ ++ . -...|+||.|+.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~---~~------~-~~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA---KV------E-DFSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT---GG------G-GGCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH---HH------h-hccCCEEEEeCC
Confidence 6899999999999999999999874 7999999999999999888632 221111 10 0 125899999887
Q ss_pred CHH---HHHHHHHHhccCCceEEEEcc
Q 016978 274 NVS---VMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 274 ~~~---~~~~~~~~l~~~~G~iv~~g~ 297 (379)
... .+..+...++++ ..++.++.
T Consensus 104 ~~~~~~vl~~l~~~l~~~-~iv~d~~S 129 (314)
T 3ggo_A 104 VRTFREIAKKLSYILSED-ATVTDQGS 129 (314)
T ss_dssp GGGHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred HHHHHHHHHHHhhccCCC-cEEEECCC
Confidence 633 344455556664 56665554
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.023 Score=52.26 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHh-cC---CceE-eCCCCCCchHHHHHHHhcCCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN-FG---VTEF-VNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~-lg---~~~v-~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
.+.+|||+|+ |.+|..+++.+... |+.+|+++++++++.+.+.+ +. ...+ .|..+ . +.+.+... ++|
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d--~---~~l~~~~~-~~D 93 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD--L---ERLNYALE-GVD 93 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC--H---HHHHHHTT-TCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC--H---HHHHHHHh-cCC
Confidence 4789999988 99999999888888 86689999998877655432 32 2111 12222 2 22333322 699
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+||++++.
T Consensus 94 ~Vih~Aa~ 101 (344)
T 2gn4_A 94 ICIHAAAL 101 (344)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.016 Score=50.21 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe--CCCCCCchHHH---HHHHhcC-CCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV--NPKDHDKPIQQ---VLVDLTD-GGV 265 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~--~~~~~~~~~~~---~i~~~~~-~g~ 265 (379)
..++++||+|+ |++|..+++.+...|+ +|+++++++++.+ +....+ |..+ ..++.+ .+.+... +++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~g~i 77 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSF-TEQADQVTAEVGKLLGDQKV 77 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCH-HHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCC-HHHHHHHHHHHHHHhCCCCC
Confidence 35789999988 9999999999999999 8999988776432 111122 1111 112222 2222222 479
Q ss_pred cEEEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 266 DYSFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 266 d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|++++++|.. ...+.++..++++ |+++.++..
T Consensus 78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-g~iv~isS~ 135 (241)
T 1dhr_A 78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAK 135 (241)
T ss_dssp EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC-CEEEEECCH
Confidence 9999998730 0133444555565 899988754
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=95.90 E-value=0.022 Score=50.90 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHH-----hcCCceE-e--CCCCC---CchHHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRAK-----NFGVTEF-V--NPKDH---DKPIQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~~-----~lg~~~v-~--~~~~~---~~~~~~~i~~~ 260 (379)
.|+++||+|+ |++|.++++.+...|+ +|+++++++ ++.+.+. +.+.... + |..+. ...+.+.+.+.
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence 4689999988 9999999999889999 899988887 5543322 2343322 2 22210 12222223222
Q ss_pred c--CCCccEEEEcCCC
Q 016978 261 T--DGGVDYSFECIGN 274 (379)
Q Consensus 261 ~--~~g~d~vid~~g~ 274 (379)
. .+++|++|+++|.
T Consensus 101 ~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 101 FRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 1 2379999998873
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.019 Score=51.16 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=50.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCC---ceEeCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGV---TEFVNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~---~~v~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.+++++|+|+|++|.+++..+...|+.+|++++++.++.+.+ ++++. ..+....+ .. ..+|+||
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~-----------l~-~~aDiII 192 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ-----------LK-QSYDVII 192 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----------CC-SCEEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH-----------hc-CCCCEEE
Confidence 688999999999999999888889977899999998875543 44432 12222211 11 3699999
Q ss_pred EcCCCH
Q 016978 270 ECIGNV 275 (379)
Q Consensus 270 d~~g~~ 275 (379)
+|++..
T Consensus 193 naTp~g 198 (281)
T 3o8q_A 193 NSTSAS 198 (281)
T ss_dssp ECSCCC
T ss_pred EcCcCC
Confidence 998763
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.033 Score=51.51 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC----hhH---------HHHHHhcCCceEeCCCCCCchHHHHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID----PKK---------FDRAKNFGVTEFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~----~~~---------~~~~~~lg~~~v~~~~~~~~~~~~~i~~ 259 (379)
-++.+|+|+|+|..|..+++++..+|+++|+.++++ .+| .+++++... .. ...++.+.++
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~-----~~-~~~~L~eav~- 262 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP-----ER-LSGDLETALE- 262 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT-----TC-CCSCHHHHHT-
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc-----cC-chhhHHHHHc-
Confidence 367899999999999999999999999899999987 544 444544321 00 1134555543
Q ss_pred hcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
++|++|-+++..-+-++.++.|+++ ..++.++.+.
T Consensus 263 ----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt 297 (388)
T 1vl6_A 263 ----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV 297 (388)
T ss_dssp ----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS
T ss_pred ----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC
Confidence 3799999887533346677778885 7666666543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.027 Score=50.35 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=32.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 458999999999999999999999998999998654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.059 Score=50.45 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred hhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----------cCC--ce--EeCCC
Q 016978 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----------FGV--TE--FVNPK 247 (379)
Q Consensus 183 ~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----------lg~--~~--v~~~~ 247 (379)
+..+++..++++|++||=+|+| .|.+++++|+..|+.+|++++.+++-.+++++ +|. .. ++..+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCG-tG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCT-TSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 4446677889999999999986 58888889988898679999999865554432 342 22 23222
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCC--C---HHHHHHHHHHhccCCceEEEEccC
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIG--N---VSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g--~---~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
-....+... + ..+|+|+-..- . ...+...++.|+++ |++|..-..
T Consensus 241 ~~~lp~~d~---~--~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f 290 (438)
T 3uwp_A 241 FLSEEWRER---I--ANTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPF 290 (438)
T ss_dssp TTSHHHHHH---H--HTCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCS
T ss_pred ccCCccccc---c--CCccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeecc
Confidence 211222111 1 15899884211 1 23466778889997 999977543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.019 Score=51.16 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC-----C---------c--eEeCCCCCCchHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-----V---------T--EFVNPKDHDKPIQQV 256 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg-----~---------~--~v~~~~~~~~~~~~~ 256 (379)
..+++||++|+|. |..+..+++. +..+|++++.+++-.+.+++.- . . .++. .+..+.
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~-----~D~~~~ 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF 146 (281)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE-----CchHHH
Confidence 4568999998753 6666677777 7669999999999888887632 1 1 1111 233333
Q ss_pred HHHhcCCCccEEEEcCC----------CHHHHHHHHHHhccCCceEEEE
Q 016978 257 LVDLTDGGVDYSFECIG----------NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 257 i~~~~~~g~d~vid~~g----------~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+.. .+.+|+|+--.. ...++..+.+.|+++ |.++..
T Consensus 147 l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~ 192 (281)
T 1mjf_A 147 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ 192 (281)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred hcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence 433 458999874322 246789999999997 998875
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.017 Score=51.33 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=50.6
Q ss_pred CCCEEEEEcC-Ch--HHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GT--VGLAVAEGAKAAGASRVIGIDIDP--KKFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~--vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |. +|..+++.+...|+ +|+++++++ ++.+.+. +.+...++ |..+ ..++.+.+.+.. .+
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g 102 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS-DQEIKDLFVELGKVWD 102 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC-HHHHHHHHHHHHHHcC
Confidence 4789999985 44 99999998889999 899998876 5544443 33332232 2222 123333333321 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
.+|++|+++|.
T Consensus 103 ~id~li~nAg~ 113 (280)
T 3nrc_A 103 GLDAIVHSIAF 113 (280)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999998873
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.038 Score=53.44 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-------HHHHHHhcCCceEe---CCCCCCchHHHHHH
Q 016978 192 VEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-------KFDRAKNFGVTEFV---NPKDHDKPIQQVLV 258 (379)
Q Consensus 192 ~~~g--~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-------~~~~~~~lg~~~v~---~~~~~~~~~~~~i~ 258 (379)
++++ +++||+|+ |++|...++.+...|+++|+.+.++.. ..+.+++.|....+ |..+ ...+.+.+.
T Consensus 234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~ 312 (496)
T 3mje_A 234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD-REALAALLA 312 (496)
T ss_dssp CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHH
Confidence 4455 99999987 999999888888889878888877532 22334556765432 2222 234444455
Q ss_pred HhcCC-CccEEEEcCCC
Q 016978 259 DLTDG-GVDYSFECIGN 274 (379)
Q Consensus 259 ~~~~~-g~d~vid~~g~ 274 (379)
+.... ++|+||+++|.
T Consensus 313 ~i~~~g~ld~vVh~AGv 329 (496)
T 3mje_A 313 ELPEDAPLTAVFHSAGV 329 (496)
T ss_dssp TCCTTSCEEEEEECCCC
T ss_pred HHHHhCCCeEEEECCcc
Confidence 44333 79999999874
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.025 Score=51.51 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-.|.+|.|+|.|.+|...++.++.+|+ +|++.++ +.++ +.++++|+.. . .++.+.+. ..|+|+-+
T Consensus 144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~------~~l~ell~-----~aDvVil~ 209 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H------DSLDSLLS-----VSQFFSLN 209 (320)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C------SSHHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c------CCHHHHHh-----hCCEEEEe
Confidence 468899999999999999999999999 8999998 7765 3555667632 1 12222222 36787777
Q ss_pred CCCH----HHH-HHHHHHhccCCceEEEEcc
Q 016978 272 IGNV----SVM-RAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~----~~~-~~~~~~l~~~~G~iv~~g~ 297 (379)
+... ..+ ...+..++++ ..++.++.
T Consensus 210 ~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar 239 (320)
T 1gdh_A 210 APSTPETRYFFNKATIKSLPQG-AIVVNTAR 239 (320)
T ss_dssp CCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred ccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence 6532 112 3455667775 66766654
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.016 Score=51.75 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=63.7
Q ss_pred cccccchhhhhhhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCch
Q 016978 174 LLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKP 252 (379)
Q Consensus 174 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~ 252 (379)
.+||+.......|.+..---.|++|+|+|.| .+|..+++++...|+ +|+.+.+....+++
T Consensus 144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~l------------------ 204 (300)
T 4a26_A 144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTEDM------------------ 204 (300)
T ss_dssp CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHHH------------------
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCchh------------------
Confidence 4555545445433333333589999999985 589999999999999 88888553222110
Q ss_pred HHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 253 IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 253 ~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+.++ .+|+||.++|.+..+.. ..++++ ..++.+|..
T Consensus 205 -~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 241 (300)
T 4a26_A 205 -IDYLR-----TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT 241 (300)
T ss_dssp -HHHHH-----TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred -hhhhc-----cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence 02222 37999999988665432 447885 888888764
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.026 Score=48.84 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc----
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT---- 261 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~---- 261 (379)
...++++||-+|+| .|..++.+|+.+. ..++++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 67 ~~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~--gda~~~l~~l~~~~~ 143 (237)
T 3c3y_A 67 KLVNAKKTIEVGVF-TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE--SDAMLALDNLLQGQE 143 (237)
T ss_dssp HHTTCCEEEEECCT-TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHSTT
T ss_pred HhhCCCEEEEeCCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--cCHHHHHHHHHhccC
Confidence 34567899999886 5777888888874 2499999999998877764 35432111110 12333333331
Q ss_pred -CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 262 -DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.||+||-.... ...+..+.+.|+++ |.++.-.
T Consensus 144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~ 181 (237)
T 3c3y_A 144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN 181 (237)
T ss_dssp CTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence 3479998854332 45688899999996 9887643
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.037 Score=53.49 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=55.2
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-------HHHHHhcCCceEe---CCCCCCchHHHHHHH
Q 016978 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEFV---NPKDHDKPIQQVLVD 259 (379)
Q Consensus 191 ~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-------~~~~~~lg~~~v~---~~~~~~~~~~~~i~~ 259 (379)
.++++.+|||+|+ |++|...+..+...|+++|+.++++... .+.+++.|....+ |..+ ...+...+.+
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~ 300 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGG 300 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHT
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHHH
Confidence 3678999999987 9999998888888899668888887631 1234455654322 2222 1334444444
Q ss_pred hcC-CCccEEEEcCCC
Q 016978 260 LTD-GGVDYSFECIGN 274 (379)
Q Consensus 260 ~~~-~g~d~vid~~g~ 274 (379)
... +.+|.||+++|.
T Consensus 301 i~~~g~ld~VIh~AG~ 316 (486)
T 2fr1_A 301 IGDDVPLSAVFHAAAT 316 (486)
T ss_dssp SCTTSCEEEEEECCCC
T ss_pred HHhcCCCcEEEECCcc
Confidence 422 278999999884
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.011 Score=51.75 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++++.+. +.. ..|..+ ..++.+.+.+.. .+.+|+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d-~~~v~~~~~~~~~~~g~iD~lv 92 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD-TEQVEQAYKEIEETHGPVEVLI 92 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS-HHHHHHHHHHHHHHTCSCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC-HHHHHHHHHHHHHHcCCCCEEE
Confidence 3689999988 9999999999999999 89998887654321 111 123332 122333333321 24799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 93 ~nAg~ 97 (253)
T 2nm0_A 93 ANAGV 97 (253)
T ss_dssp EECSC
T ss_pred ECCCC
Confidence 98874
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.04 Score=48.44 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCCh---hHHHHHH-hcCCceEe--CCCCCCchHHHHHHHhcC--
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDP---KKFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLTD-- 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~---~~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~~-- 262 (379)
.++++||+|+ |++|.++++.+...|+ +|+++++++ +..+.+. +.+...++ |..+ ..++.+.+.+...
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE-DASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4789999976 6999999999999999 899988876 2333332 23332333 3332 1233333443322
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 86 g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 86 PKFDGFVHSIGF 97 (265)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999998873
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.023 Score=48.47 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCce-E-eCCCCCCchHHHHHHHhcC-
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTE-F-VNPKDHDKPIQQVLVDLTD- 262 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~-v-~~~~~~~~~~~~~i~~~~~- 262 (379)
...++++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++ .|... + +.. .+..+.+.....
T Consensus 61 ~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~----~d~~~~~~~~~~~ 135 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL----SPAKDTLAELIHA 135 (225)
T ss_dssp HHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE----SCHHHHHHHHHTT
T ss_pred HhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe----CCHHHHHHHhhhc
Confidence 345788999999863 888888988874 3499999999988777764 34431 1 111 223333333322
Q ss_pred ---CCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 263 ---GGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ---~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.||+|+-.... ...+..+.+.|+++ |.++.-..
T Consensus 136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 175 (225)
T 3tr6_A 136 GQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNV 175 (225)
T ss_dssp TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECS
T ss_pred cCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 479998843332 35678889999997 99886543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.052 Score=45.67 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CC----------------c-eEeCCCCC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GV----------------T-EFVNPKDH 249 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~----------------~-~v~~~~~~ 249 (379)
....+.++.+||.+|+| .|..+..+++. |+ +|++++.+++-.+.+++. +. . .++..+-.
T Consensus 16 ~~l~~~~~~~vLD~GCG-~G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 92 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCG-KSQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 92 (203)
T ss_dssp HHHCCCTTCEEEETTTC-CSHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred HhcccCCCCEEEEeCCC-CcHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence 44456789999999886 36667777776 88 999999999988888753 11 1 12211110
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEE
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.. .+.||+|++...- ...++.+.+.|+++ |+++++
T Consensus 93 ~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~ 139 (203)
T 1pjz_A 93 ALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLI 139 (203)
T ss_dssp SSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEE
T ss_pred cCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 111110 0369999973221 13577889999997 994444
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.022 Score=49.34 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCC------eEEEEcCChhHHHHHHh----cCCce-Ee--CCCCCCchHHHHHHHh
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGAS------RVIGIDIDPKKFDRAKN----FGVTE-FV--NPKDHDKPIQQVLVDL 260 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~------~vi~v~~~~~~~~~~~~----lg~~~-v~--~~~~~~~~~~~~i~~~ 260 (379)
+++|||+|+ |.+|..+++.+...|+. +|+++++++++.+.+.+ .+... ++ |..+ ...+.+.+.+.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC-HHHHHHHHHHH
Confidence 568999988 99999998888888884 68888888876654432 24322 22 2222 12233333322
Q ss_pred c--CCCccEEEEcCCC
Q 016978 261 T--DGGVDYSFECIGN 274 (379)
Q Consensus 261 ~--~~g~d~vid~~g~ 274 (379)
. .+++|++|+++|.
T Consensus 81 ~~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGV 96 (244)
T ss_dssp HHHTSCCSEEEECCCC
T ss_pred HHhCCCCCEEEEcCCc
Confidence 1 2479999999873
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=52.11 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=64.9
Q ss_pred ccccccchhhhhhhhhccCC-CCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAKV-EPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
..+||+....... ++..++ -.|.+|+|+|+| .+|.-+++++...|+ +|+.+.+..
T Consensus 143 ~~~PcTp~gi~~l-l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t--------------------- 199 (301)
T 1a4i_A 143 CFIPCTPKGCLEL-IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT--------------------- 199 (301)
T ss_dssp CCCCHHHHHHHHH-HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred CccCchHHHHHHH-HHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCc---------------------
Confidence 3556544444443 344443 579999999997 689999999999999 888874221
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.++.+.++ .+|+||-++|.+.++.. ..++++ ..++.+|..
T Consensus 200 ~~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDVgi~ 239 (301)
T 1a4i_A 200 AHLDEEVN-----KGDILVVATGQPEMVKG--EWIKPG-AIVIDCGIN 239 (301)
T ss_dssp SSHHHHHT-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCCB
T ss_pred ccHHHHhc-----cCCEEEECCCCcccCCH--HHcCCC-cEEEEccCC
Confidence 23333332 38999999998764332 347886 889999874
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=95.79 E-value=0.031 Score=51.43 Aligned_cols=90 Identities=17% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAK-AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~-~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
-.|.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+.+.++|+..+ . ++.+.+. ..|+|+.+
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~----~l~ell~-----~aDvVil~ 227 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV---D----SLEELAR-----RSDCVSVS 227 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC---S----SHHHHHH-----HCSEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe---C----CHHHHhc-----cCCEEEEe
Confidence 45889999999999999999999 9999 89999988776666666665321 1 2222222 26777776
Q ss_pred CCCHH----HH-HHHHHHhccCCceEEEEc
Q 016978 272 IGNVS----VM-RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 272 ~g~~~----~~-~~~~~~l~~~~G~iv~~g 296 (379)
+.... .+ ...+..++++ ..++.++
T Consensus 228 vp~~~~t~~li~~~~l~~mk~g-ailin~s 256 (348)
T 2w2k_A 228 VPYMKLTHHLIDEAFFAAMKPG-SRIVNTA 256 (348)
T ss_dssp CCCSGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred CCCChHHHHHhhHHHHhcCCCC-CEEEECC
Confidence 65421 12 2455566664 5555543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.79 E-value=0.02 Score=49.59 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=49.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--CC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~-v~~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~~ 263 (379)
|++|||+|+ |.+|..+++.+...|+ +|++ ..+++++.+.+ ++.+... . .|..+ ..++.+.+.+.. .+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 78 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWG 78 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcC
Confidence 578999988 9999999999999999 7877 47777665433 2234322 1 23222 123333333221 23
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++|+++|.
T Consensus 79 ~id~li~~Ag~ 89 (244)
T 1edo_A 79 TIDVVVNNAGI 89 (244)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999998873
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.019 Score=50.25 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHH-HHHH----hcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~-~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |.+|..++..+...|+ +|++++++.++. +.++ +.+.... .|..+ ...+.+.+.+.. .
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 90 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC-HHHHHHHHHHHHHhc
Confidence 4678999988 9999999999889999 899998854432 2222 2243321 23332 122333333322 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++|+++|.
T Consensus 91 ~~id~li~~Ag~ 102 (265)
T 1h5q_A 91 GPISGLIANAGV 102 (265)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999999874
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.046 Score=48.76 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=51.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..+.
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~-----~advvi~~v~~~~ 69 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA-------SSPAEVCA-----ACDITIAMLADPA 69 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC-------SCHHHHHH-----HCSEEEECCSSHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHH-----cCCEEEEEcCCHH
Confidence 58899999999998888888898 89999999999888877775321 12222222 2577777777654
Q ss_pred HHHHHH
Q 016978 277 VMRAAL 282 (379)
Q Consensus 277 ~~~~~~ 282 (379)
.+...+
T Consensus 70 ~~~~v~ 75 (287)
T 3pdu_A 70 AAREVC 75 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0054 Score=53.59 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
.+++|||+|+ |++|..+++.+...|+ +|+++++++++.+.+. + ...|..+ ..++.+.+.+.. .+++|++++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~-~~~~~~~~~~~~~~~g~id~lv~ 87 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS 87 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC-HHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999988 9999999999999999 8999988766433221 1 2234333 122333333221 137899999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 88 ~Ag~ 91 (247)
T 1uzm_A 88 NAGL 91 (247)
T ss_dssp ECSC
T ss_pred CCCC
Confidence 8874
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.032 Score=46.63 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=43.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|||+|+ |.+|..+++.+. .|+ +|++++++++ ....|..+ ...+.+.+.+. +++|++|+++|
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~-~~~~~~~~~~~--~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN-IDSIKKMYEQV--GKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC-HHHHHHHHHHH--CCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC-HHHHHHHHHHh--CCCCEEEECCC
Confidence 7999988 999999998888 899 8999888754 12233333 12333344443 46899999987
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.023 Score=51.60 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=47.3
Q ss_pred cCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH--HHHHHhc----CCceE-eCCCCCCchHHHHHHHhc
Q 016978 190 AKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNF----GVTEF-VNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 190 ~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~--~~~~~~l----g~~~v-~~~~~~~~~~~~~i~~~~ 261 (379)
-..+++.+|||+|+ |.+|..+++.+...|+ +|++++++.++ .+.++.+ +...+ .|..+ ...+.+.+...
T Consensus 9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~- 85 (335)
T 1rpn_A 9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD-ACSVQRAVIKA- 85 (335)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC-HHHHHHHHHHH-
T ss_pred cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC-HHHHHHHHHHc-
Confidence 34678999999988 9999999998888998 89999886543 1222222 11111 12222 12233333322
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+|+||++++.
T Consensus 86 --~~d~Vih~A~~ 96 (335)
T 1rpn_A 86 --QPQEVYNLAAQ 96 (335)
T ss_dssp --CCSEEEECCSC
T ss_pred --CCCEEEECccc
Confidence 58999999874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.017 Score=51.15 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=58.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|||+|+ |.+|..+++.+... |+ +|+++++++++.+.+...+...+. |..+ . +.+.+... ++|+||+++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD--E---AALTSALQ-GVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC--H---HHHHHHTT-TCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC--H---HHHHHHHh-CCCEEEEeC
Confidence 4899998 99999999888877 88 899998887765555544554322 2222 2 22333322 689999998
Q ss_pred CCH-----HHHHHHHHHhccC-CceEEEEccC
Q 016978 273 GNV-----SVMRAALECCHKG-WGTSVIVGVA 298 (379)
Q Consensus 273 g~~-----~~~~~~~~~l~~~-~G~iv~~g~~ 298 (379)
+.. .....+++.+... -+++|.++..
T Consensus 74 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 74 SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp --------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 752 1233444444432 2578877654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.027 Score=50.35 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCCCEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc----CCce-EeCCCCCCchHHHHHHHhcCCCc
Q 016978 193 EPGSIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----GVTE-FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 193 ~~g~~VlI~G-ag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l----g~~~-v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.+|+++||+| +|++|.+++..+...|+ +|+++++++++.+.+ +++ +... ..+..+ .+ .+.+... .+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~--~~---~~~~~~~-~~ 189 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--DA---SRAEAVK-GA 189 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--HH---HHHHHTT-TC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC--HH---HHHHHHH-hC
Confidence 3689999998 59999999999999999 799999987776533 222 2221 223322 11 2223222 48
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999863
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.077 Score=47.05 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=61.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCC-CccEEEEcC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDG-GVDYSFECI 272 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~ 272 (379)
.+|.|+|+|.+|...++.+...|.. +|++.++++++.+.++++|... ... + ..+.+ . ..|+||.|+
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~--~----~~~~~-----~~~aDvVilav 70 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT--S----IAKVE-----DFSPDFVMLSS 70 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES--C----GGGGG-----GTCCSEEEECS
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccC--C----HHHHh-----cCCCCEEEEcC
Confidence 3689999999999999998888852 6999999999988888888642 221 1 10111 2 489999998
Q ss_pred CCHHH---HHHHHHHhccCCceEEEEcc
Q 016978 273 GNVSV---MRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 273 g~~~~---~~~~~~~l~~~~G~iv~~g~ 297 (379)
..... +..+...++++ ..++.++.
T Consensus 71 p~~~~~~v~~~l~~~l~~~-~iv~~~~~ 97 (281)
T 2g5c_A 71 PVRTFREIAKKLSYILSED-ATVTDQGS 97 (281)
T ss_dssp CHHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred CHHHHHHHHHHHHhhCCCC-cEEEECCC
Confidence 87432 23333446664 56665544
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.022 Score=50.37 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH----HhcCCceE-e--CCCCCCchHHHHHHHhcC-
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTEF-V--NPKDHDKPIQQVLVDLTD- 262 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~----~~lg~~~v-~--~~~~~~~~~~~~i~~~~~- 262 (379)
..+++|||+|+ |++|.++++.+...|+ +|+.+ .+++++.+.+ ++.+.... + |..+ ..++.+.+.+...
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN-AADIAAMFSAVDRQ 101 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 45789999988 9999999999999999 77665 6776655433 23344332 2 2222 1223333332211
Q ss_pred -CCccEEEEcCCC
Q 016978 263 -GGVDYSFECIGN 274 (379)
Q Consensus 263 -~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 102 ~g~id~li~nAg~ 114 (272)
T 4e3z_A 102 FGRLDGLVNNAGI 114 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 379999998873
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.026 Score=51.35 Aligned_cols=76 Identities=20% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-----CCc-eEe---CCCCCCchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-----GVT-EFV---NPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-----g~~-~v~---~~~~~~~~~~~~i~~~~ 261 (379)
..++.+|||+|+ |.+|..++..+...|+ +|++++++.++.+.+.+. +.. .++ |..+ ... +.+..
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~----~~~~~ 81 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK-QGA----YDEVI 81 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS-TTT----TTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC-hHH----HHHHH
Confidence 346789999988 9999999998888999 899998987765544321 211 122 2222 111 22221
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.++|+||++++.
T Consensus 82 -~~~d~vih~A~~ 93 (342)
T 1y1p_A 82 -KGAAGVAHIASV 93 (342)
T ss_dssp -TTCSEEEECCCC
T ss_pred -cCCCEEEEeCCC
Confidence 268999999874
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.05 Score=46.94 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
++++++||=+|+| .|..+..+++. |+ +|++++.+++..+.+++. ..++. .+..+.+..+..+.+|+|+-.
T Consensus 39 ~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~-----~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCG-RGEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVK-----SDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCT-TTHHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEEC-----SCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCC-CCHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceee-----ccHHHHhhhcCCCCeeEEEEC
Confidence 5688999999885 35555566665 88 899999999999988876 22332 233333334444589999863
Q ss_pred C-----CC---HHHHHHHHHHhccCCceEEEEc
Q 016978 272 I-----GN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 272 ~-----g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
. .. ...+..+.+.|+++ |.++...
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 140 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYS-SYIVIES 140 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence 2 21 36788999999997 9988654
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=54.71 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCCh-------------h----HHHHHHhcCCceEe---CCCC
Q 016978 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDP-------------K----KFDRAKNFGVTEFV---NPKD 248 (379)
Q Consensus 191 ~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~-------------~----~~~~~~~lg~~~v~---~~~~ 248 (379)
.+++++++||+|+ |++|...++.+...|+++++.+ +++. + ..+.+++.|....+ |..+
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 3678899999987 9999998888888899667777 7762 1 22334455664432 2222
Q ss_pred CCchHHHHHHHhcC-CCccEEEEcCCC
Q 016978 249 HDKPIQQVLVDLTD-GGVDYSFECIGN 274 (379)
Q Consensus 249 ~~~~~~~~i~~~~~-~g~d~vid~~g~ 274 (379)
.......+.+... +.+|.||+++|.
T Consensus 327 -~~~v~~~~~~i~~~g~id~vVh~AGv 352 (525)
T 3qp9_A 327 -AEAAARLLAGVSDAHPLSAVLHLPPT 352 (525)
T ss_dssp -HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred -HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence 2334444444432 379999999884
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.021 Score=53.38 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=40.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
-.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++.+.++++|+.
T Consensus 189 l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~ 236 (393)
T 2nac_A 189 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLT 236 (393)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCE
T ss_pred CCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCce
Confidence 368899999999999999999999999 899998887666666666653
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.023 Score=51.78 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=48.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHH--HHHHhcCC--c-eEe--CCCCCCchHHHHHHHhcCCCcc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF--DRAKNFGV--T-EFV--NPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~--~~~~~lg~--~-~v~--~~~~~~~~~~~~i~~~~~~g~d 266 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++++++++. +.+++++. . .++ |..+ ...+.+.+... .+|
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~---~~d 77 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE-FSNIIRTIEKV---QPD 77 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC-HHHHHHHHHHH---CCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCC-HHHHHHHHHhc---CCC
Confidence 678999988 9999999998888999 899998876542 23344421 1 122 2222 12233333322 589
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+||++++.
T Consensus 78 ~vih~A~~ 85 (345)
T 2z1m_A 78 EVYNLAAQ 85 (345)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.02 Score=50.43 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=48.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++ .+.... ..|..+ ..+....+.+.. .+++|++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDil 82 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE-----GLPEELFVEADLTT-KEGCAIVAEATRQRLGGVDVI 82 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT-----TSCTTTEEECCTTS-HHHHHHHHHHHHHHTSSCSEE
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh-----CCCcEEEEEcCCCC-HHHHHHHHHHHHHHcCCCCEE
Confidence 6899999988 9999999999999999 89999886542 111111 123322 122222222221 2479999
Q ss_pred EEcCC
Q 016978 269 FECIG 273 (379)
Q Consensus 269 id~~g 273 (379)
++++|
T Consensus 83 VnnAG 87 (261)
T 4h15_A 83 VHMLG 87 (261)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99876
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.024 Score=49.26 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH----HHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFDR----AKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~~----~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|.+.++.+...|+ +|+.+++ ++++.+. +++.+.+.. .|..+ ..+..+.+.+.. .
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD-ADEVKAMIKEVVSQF 80 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 4688999988 9999999999999999 7877655 4444433 233454432 22222 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 81 g~id~lv~nAg~ 92 (246)
T 3osu_A 81 GSLDVLVNNAGI 92 (246)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999874
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.014 Score=51.85 Aligned_cols=78 Identities=29% Similarity=0.362 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce-Ee--CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-FV--NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~~ 263 (379)
.+++|||+|+ |.+|..++..+...|+ +|+++++++++.+.+ ++.+... ++ |..+ ..++.+.+.+.. .+
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD-PKSVEETISQQEKDFG 110 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC-HHHHHHHHHHHHHHhC
Confidence 4789999988 9999999888888899 899998876654332 2234332 22 3222 122333333321 13
Q ss_pred CccEEEEcCC
Q 016978 264 GVDYSFECIG 273 (379)
Q Consensus 264 g~d~vid~~g 273 (379)
.+|++|+++|
T Consensus 111 ~id~li~~Ag 120 (279)
T 3ctm_A 111 TIDVFVANAG 120 (279)
T ss_dssp CCSEEEECGG
T ss_pred CCCEEEECCc
Confidence 6999999876
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.027 Score=49.38 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCC---------------------c-eEeCCCC
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV---------------------T-EFVNPKD 248 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~---------------------~-~v~~~~~ 248 (379)
..++.+||.+|+| .|..+..||+. |+ +|++++.+++-.+.+++ .+. . .++..+-
T Consensus 66 ~~~~~~vLD~GCG-~G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCG-KAIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCT-TCTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCC-CcHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 4578999999886 36777777765 88 99999999998888864 221 1 1111111
Q ss_pred CCchHHHHHHHhcC-CCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEc
Q 016978 249 HDKPIQQVLVDLTD-GGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 249 ~~~~~~~~i~~~~~-~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.++ .... +.||+|++...- ...+..+.+.|+++ |+++++.
T Consensus 143 --~~l-----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~ 191 (252)
T 2gb4_A 143 --FDL-----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV 191 (252)
T ss_dssp --TTG-----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred --ccC-----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence 111 1112 479999974321 23578888999997 9986553
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.065 Score=45.57 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=54.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|+|+|+|.+|..+++.+...|. .|+++++++++.+.+. ..+...+. .+. .+ .+.+++..-..+|+++-+++..
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~-gd~--~~-~~~l~~a~i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIH-GDG--SH-KEILRDAEVSKNDVVVILTPRD 76 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEE-SCT--TS-HHHHHHHTCCTTCEEEECCSCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEE-cCC--CC-HHHHHhcCcccCCEEEEecCCc
Confidence 58899999999999999999999 8999999999887754 45654332 222 11 2233343223799999999885
Q ss_pred H
Q 016978 276 S 276 (379)
Q Consensus 276 ~ 276 (379)
.
T Consensus 77 ~ 77 (218)
T 3l4b_C 77 E 77 (218)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=51.95 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=48.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhc--CCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLT--DGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~--~~g~d~vi 269 (379)
.+++|||+|+ |++|.+.+..+...|+ +|++++++.++.+. ..+.. ..|..+ ..+..+.+.+.. .+++|+++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~---~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~iD~lv 101 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSAD---PDIHTVAGDISK-PETADRIVREGIERFGRIDSLV 101 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSS---TTEEEEESCTTS-HHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccc---CceEEEEccCCC-HHHHHHHHHHHHHHCCCCCEEE
Confidence 4789999988 9999999999999999 89999887654221 11111 123322 122333333221 13799999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 102 ~nAg~ 106 (260)
T 3un1_A 102 NNAGV 106 (260)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.046 Score=48.05 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=69.6
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.+...+.++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++. |.. .++..+- .++
T Consensus 53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~----- 123 (273)
T 3bus_A 53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA--MDL----- 123 (273)
T ss_dssp HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----
T ss_pred HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--ccC-----
Confidence 45666788999999999874 7788888888887 999999999887776642 321 2222221 110
Q ss_pred HhcCCCccEEEEcCC------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
....+.+|+|+-... ....+..+.+.|+++ |+++....
T Consensus 124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 167 (273)
T 3bus_A 124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIADF 167 (273)
T ss_dssp CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEEE
T ss_pred CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 112247999984321 245688899999997 99887643
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.015 Score=51.44 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..+||+.......+.+..---.|.+|+|+|.| .+|.-+++++...|+ +|+.+.+.. .
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t---------------------~ 194 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------K 194 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------S
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc---------------------h
Confidence 34555444444433232223579999999997 589999999999999 888874322 2
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.+++ +|+||-++|.+.++.. +.++++ ..++.+|..
T Consensus 195 ~L~~~~~~-----ADIVI~Avg~p~lI~~--~~vk~G-avVIDVgi~ 233 (288)
T 1b0a_A 195 NLRHHVEN-----ADLLIVAVGKPGFIPG--DWIKEG-AIVIDVGIN 233 (288)
T ss_dssp CHHHHHHH-----CSEEEECSCCTTCBCT--TTSCTT-CEEEECCCE
T ss_pred hHHHHhcc-----CCEEEECCCCcCcCCH--HHcCCC-cEEEEccCC
Confidence 34444443 8999999998764332 336785 888888865
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.074 Score=48.08 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=60.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|... . .+..+.+. .+|+||.|+..+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~-----~~DvVi~av~~~ 97 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGARL---G----RTPAEVVS-----TCDITFACVSDP 97 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCEE---C----SCHHHHHH-----HCSEEEECCSSH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCEE---c----CCHHHHHh-----cCCEEEEeCCCH
Confidence 579999999999998888888898 7999999998888777776531 1 12222222 378888888865
Q ss_pred HHHHHHHH-------HhccCCceEEEEcc
Q 016978 276 SVMRAALE-------CCHKGWGTSVIVGV 297 (379)
Q Consensus 276 ~~~~~~~~-------~l~~~~G~iv~~g~ 297 (379)
..+...+. .+.++ ..++.++.
T Consensus 98 ~~~~~v~~~~~~~~~~l~~~-~~vv~~s~ 125 (316)
T 2uyy_A 98 KAAKDLVLGPSGVLQGIRPG-KCYVDMST 125 (316)
T ss_dssp HHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred HHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence 55555543 34453 45555543
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.074 Score=47.06 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=58.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|... +.. + ..+. ..+|+||-|+...
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~--~--------~~~~--~~~D~vi~av~~~ 68 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ--D--------LSLL--QTAKIIFLCTPIQ 68 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES--C--------GGGG--TTCSEEEECSCHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccC--C--------HHHh--CCCCEEEEECCHH
Confidence 68899999999999998888898 8999999999888888877631 221 1 1122 3589999998863
Q ss_pred HHHHHHHHH----hccCCceEEEE
Q 016978 276 SVMRAALEC----CHKGWGTSVIV 295 (379)
Q Consensus 276 ~~~~~~~~~----l~~~~G~iv~~ 295 (379)
.+...+.. ++++ ..++.+
T Consensus 69 -~~~~~~~~l~~~~~~~-~~vv~~ 90 (279)
T 2f1k_A 69 -LILPTLEKLIPHLSPT-AIVTDV 90 (279)
T ss_dssp -HHHHHHHHHGGGSCTT-CEEEEC
T ss_pred -HHHHHHHHHHhhCCCC-CEEEEC
Confidence 34444333 4443 455554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.039 Score=48.86 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=62.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
.+|||+|+|.+|..++..+...|+ +|+++++++++.+.+...+...+. |..+ + . ..++|+||++++.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d----~----~---~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGEE----P----S---LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSSC----C----C---CTTCCEEEECCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecccc----c----c---cCCCCEEEECCCc
Confidence 689999999999999999988899 899999999888777766654432 2222 1 1 2379999999875
Q ss_pred H----HHHHHHHHHhcc---CCceEEEEcc
Q 016978 275 V----SVMRAALECCHK---GWGTSVIVGV 297 (379)
Q Consensus 275 ~----~~~~~~~~~l~~---~~G~iv~~g~ 297 (379)
. .....+++.++. +-.++|.++.
T Consensus 74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence 2 223344444433 1257887754
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.018 Score=52.69 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=39.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++.+.+.++|+
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~ 189 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL 189 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence 57899999999999999999999999 89999988755555666665
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.061 Score=49.16 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHHHhc------CCceEeCCCCCCchHHHHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRAKNF------GVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~----~~~~~~~~l------g~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.+.+|||+|+ |.+|..++..+...|+ +|+++++.. +..+.++++ .--.++..+-.+. +.+.+...
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~ 99 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL---TTCEQVMK 99 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCH---HHHHHHTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCH---HHHHHHhc
Confidence 3689999998 9999999999999998 899998843 333333332 1112222221112 22333332
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
++|+||++++.
T Consensus 100 -~~d~Vih~A~~ 110 (351)
T 3ruf_A 100 -GVDHVLHQAAL 110 (351)
T ss_dssp -TCSEEEECCCC
T ss_pred -CCCEEEECCcc
Confidence 79999999884
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.025 Score=47.64 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----eEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
+.++++||-+|+|. |..+..+++. |..++++++.+++..+.+++.... .++..+- .++ ....+.+|+
T Consensus 40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~--~~~-----~~~~~~fD~ 110 (215)
T 2pxx_A 40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV--RKL-----DFPSASFDV 110 (215)
T ss_dssp CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT--TSC-----CSCSSCEEE
T ss_pred cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch--hcC-----CCCCCcccE
Confidence 47889999999875 7777777776 544899999999998888764321 1222211 111 122347999
Q ss_pred EEEcCC---------------------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 268 SFECIG---------------------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 268 vid~~g---------------------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+.... ....+..+.+.|+++ |+++....
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~ 160 (215)
T 2pxx_A 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS 160 (215)
T ss_dssp EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence 996311 135678888999997 99988754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.033 Score=49.89 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=48.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-------hHHHHHH---hcCCceE-eCCCCCCchHHHHHHHhcC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-------KKFDRAK---NFGVTEF-VNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-------~~~~~~~---~lg~~~v-~~~~~~~~~~~~~i~~~~~ 262 (379)
+.+|||+|+ |.+|..++..+...|+ +|+++++++ ++.+.++ ..++..+ .|..+ . +.+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d--~---~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND--H---ETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC--H---HHHHHHHh
Confidence 467999998 9999999998888898 888888876 5544332 3455433 23332 2 22333222
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
++|+||++++.
T Consensus 76 -~~d~vi~~a~~ 86 (307)
T 2gas_A 76 -QVDIVICAAGR 86 (307)
T ss_dssp -TCSEEEECSSS
T ss_pred -CCCEEEECCcc
Confidence 59999999875
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.012 Score=51.16 Aligned_cols=70 Identities=27% Similarity=0.340 Sum_probs=44.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
++|||+|+ |.+|..++..+...|+ +|+++++++++.+. ....|..+ ...+.+.+.++ .+++|+||+++|.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~-~~~~~~~~~~~-~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR-ETAVAAVLDRC-GGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH-HHHHHHHHHHH-TTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc-HHHHHHHHHHc-CCCccEEEECCCC
Confidence 47999988 9999999998888999 89999887654210 10001100 01222223322 2479999998874
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.004 Score=56.38 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred ccccccchhhhhhhhhc--------cC-CCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHhcCCc
Q 016978 173 CLLGCGVPTGLGAVWNT--------AK-VEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVT 241 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~--------~~-~~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~~lg~~ 241 (379)
..+||....+...+.+. .+ --.|.+|+|+|+| .+|..+++++...|+ +|++++++..+ .++..+++..
T Consensus 146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~ 224 (320)
T 1edz_A 146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN 224 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC
T ss_pred CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh
Confidence 45666555555433331 22 3478999999997 579999999999998 89988776332 1222223321
Q ss_pred --eE--eC-CCCCCchHHHHHHHhcCCCccEEEEcCCCHHH-HHHHHHHhccCCceEEEEccC
Q 016978 242 --EF--VN-PKDHDKPIQQVLVDLTDGGVDYSFECIGNVSV-MRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 242 --~v--~~-~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~-~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.. +. .+. .++.+.+++ +|+||-++|.+.. +.. ..++++ ..++.+|..
T Consensus 225 ~~~~t~~~~t~~--~~L~e~l~~-----ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~ 277 (320)
T 1edz_A 225 KHHVEDLGEYSE--DLLKKCSLD-----SDVVITGVPSENYKFPT--EYIKEG-AVCINFACT 277 (320)
T ss_dssp CCEEEEEEECCH--HHHHHHHHH-----CSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSS
T ss_pred cccccccccccH--hHHHHHhcc-----CCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCC
Confidence 00 00 000 234444443 8999999998653 332 236775 788888774
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.039 Score=48.39 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=49.7
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---HHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~---~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|..+++.+...|+ +|++++++++ ..+.+. +.+...++ |..+ ..++.+.+.+.. .
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ-DEELDALFAGVKEAF 84 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC-HHHHHHHHHHHHHHc
Confidence 4789999976 5999999988888899 8999988775 233332 23432322 3332 122333333221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 85 g~iD~lv~~Ag~ 96 (261)
T 2wyu_A 85 GGLDYLVHAIAF 96 (261)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.023 Score=49.68 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=49.9
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhc--CCCc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g--~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
|+++||+|+ +++|.+.++.+...| + +|+.+++++++.+.+. +++.... .|..+ ..+..+.+.+.. .+++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE-DSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS-HHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHhcCCc
Confidence 578999988 999999887776665 5 8888889888766554 3443322 23332 122322233221 1479
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 80 d~lvnnAg~ 88 (254)
T 3kzv_A 80 DSLVANAGV 88 (254)
T ss_dssp CEEEEECCC
T ss_pred cEEEECCcc
Confidence 999998874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.013 Score=50.00 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhc-
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~- 261 (379)
...++++||-+|+| .|..++.+++... ..+|++++.+++..+.+++ .|... ++. .+..+.+..+.
T Consensus 55 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~ 128 (223)
T 3duw_A 55 QIQGARNILEIGTL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT-----GLALDSLQQIEN 128 (223)
T ss_dssp HHHTCSEEEEECCT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----SCHHHHHHHHHH
T ss_pred HhhCCCEEEEecCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-----cCHHHHHHHHHh
Confidence 45678999999986 5788888888873 2399999999988777664 34422 221 12333333222
Q ss_pred --CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 --DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 --~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.||+|+-.... ...+..+.+.|+++ |.++.-..
T Consensus 129 ~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~ 168 (223)
T 3duw_A 129 EKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNV 168 (223)
T ss_dssp TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESC
T ss_pred cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCC
Confidence 1369999843322 45688889999997 98776543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.022 Score=49.99 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=48.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.| +|+|+|+|+.|.+++..+...|+++|++++++.+|.+.+.+ ++. ... .+..+.+. .+|+||+|+
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~----~~~~~~~~-----~aDiVInat 174 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL----DQLDEVVK-----KAKSLFNTT 174 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG----GGHHHHHH-----TCSEEEECS
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH----HHHHhhhc-----CCCEEEECC
Confidence 46 99999999999999999999998889999999887654432 221 111 22222221 489999987
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
+.
T Consensus 175 p~ 176 (253)
T 3u62_A 175 SV 176 (253)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.031 Score=54.29 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=53.1
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-------HHHHHhcCCceEe---CCCCCCchHHHHHHHh
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEFV---NPKDHDKPIQQVLVDL 260 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-------~~~~~~lg~~~v~---~~~~~~~~~~~~i~~~ 260 (379)
++++.+|||+|+ |++|..++..+...|+++|+.++++... .+.+++.|....+ |..+ ...+.+.+.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd-~~~v~~~~~~- 333 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE-RDALAALVTA- 333 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC-HHHHHHHHHH-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC-HHHHHHHHhc-
Confidence 578899999987 9999999988888899678888887531 2233445654322 2222 1233333333
Q ss_pred cCCCccEEEEcCCC
Q 016978 261 TDGGVDYSFECIGN 274 (379)
Q Consensus 261 ~~~g~d~vid~~g~ 274 (379)
+.+|+||+++|.
T Consensus 334 --~~ld~VVh~AGv 345 (511)
T 2z5l_A 334 --YPPNAVFHTAGI 345 (511)
T ss_dssp --SCCSEEEECCCC
T ss_pred --CCCcEEEECCcc
Confidence 579999999884
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.13 Score=46.22 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+.. . .+..+.+. ..|+||-|+..
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~---~----~~~~e~~~-----~aDvVi~~vp~ 75 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL---C----ESVKAALS-----ASPATIFVLLD 75 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE---C----SSHHHHHH-----HSSEEEECCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee---c----CCHHHHHh-----cCCEEEEEeCC
Confidence 4679999999999999999889999 8999999999988888777632 1 12333332 26888888877
Q ss_pred HHHHHHHHH-----HhccCCceEEEEcc
Q 016978 275 VSVMRAALE-----CCHKGWGTSVIVGV 297 (379)
Q Consensus 275 ~~~~~~~~~-----~l~~~~G~iv~~g~ 297 (379)
+..+...+. .+.++ ..++.++.
T Consensus 76 ~~~~~~v~~~~~l~~~~~g-~ivid~st 102 (306)
T 3l6d_A 76 NHATHEVLGMPGVARALAH-RTIVDYTT 102 (306)
T ss_dssp HHHHHHHHTSTTHHHHTTT-CEEEECCC
T ss_pred HHHHHHHhcccchhhccCC-CEEEECCC
Confidence 544444332 34453 55555543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.019 Score=52.61 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC------C---ceEeCCCCCCchHHHHHHHhcC
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG------V---TEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg------~---~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.....+||.+|+| .|..+..+++..+..+|++++.+++-.+.+++.- . ..-+.. .+..+.+.....
T Consensus 118 ~~~~~~VLdIG~G-~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~----~D~~~~l~~~~~ 192 (334)
T 1xj5_A 118 IPNPKKVLVIGGG-DGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI----GDGVAFLKNAAE 192 (334)
T ss_dssp SSCCCEEEEETCS-SSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE----SCHHHHHHTSCT
T ss_pred CCCCCEEEEECCC-ccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE----CCHHHHHHhccC
Confidence 3456899999875 4666777777665559999999999888887532 1 111111 234444443333
Q ss_pred CCccEEEEcCC----------CHHHHHHHHHHhccCCceEEEE
Q 016978 263 GGVDYSFECIG----------NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 263 ~g~d~vid~~g----------~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+.||+|+--.. ...++..+.+.|+++ |.++.-
T Consensus 193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~ 234 (334)
T 1xj5_A 193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ 234 (334)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence 47999884222 246789999999997 999875
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.039 Score=49.13 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---HHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~---~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|++|||+|+ |++|.++++.+...|+ +|++++++++ ..+.+. +.+...++ |..+ ..++.+.+.+.. .
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL-DEDIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999976 5999999998888999 8999888765 233222 23322222 3332 122323333221 2
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++|+++|
T Consensus 98 g~iD~lv~~Ag 108 (285)
T 2p91_A 98 GSLDIIVHSIA 108 (285)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 47999999987
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.01 Score=51.66 Aligned_cols=75 Identities=24% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChh-HHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPK-KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~-~g~~~vi~v~~~~~-~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++++||+|+ |++|.+.++.+.. .|+ +|+.++++++ ..+.+. ....|..+ ..+..+.+.....+++|++++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~~~~~~~~----~~~~Dv~~-~~~v~~~~~~~~~~~id~lv~ 76 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQSFSAENLK----FIKADLTK-QQDITNVLDIIKNVSFDGIFL 76 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCCCCCTTEE----EEECCTTC-HHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEeccccccccccce----EEecCcCC-HHHHHHHHHHHHhCCCCEEEE
Confidence 4678999988 9999998876665 677 8888877654 211110 01123322 133444443333348999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 77 nAg~ 80 (244)
T 4e4y_A 77 NAGI 80 (244)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9885
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.045 Score=49.97 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=59.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.+.++|...+ ++.+.+. ..|+|+.++.
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~l~e~l~-----~aDvVi~~vp 219 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV--------STPELAA-----QSDFIVVACS 219 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC--------CHHHHHH-----HCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC--------CHHHHHh-----hCCEEEEeCC
Confidence 57899999999999999999999999 89999887766665666664321 1222222 3688887765
Q ss_pred CH----HHH-HHHHHHhccCCceEEEEc
Q 016978 274 NV----SVM-RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 274 ~~----~~~-~~~~~~l~~~~G~iv~~g 296 (379)
.. ..+ ...+..++++ ..++..+
T Consensus 220 ~~~~t~~~i~~~~~~~mk~g-ailIn~s 246 (330)
T 2gcg_A 220 LTPATEGLCNKDFFQKMKET-AVFINIS 246 (330)
T ss_dssp CCTTTTTCBSHHHHHHSCTT-CEEEECS
T ss_pred CChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence 42 122 3455667774 6666554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.044 Score=52.18 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=69.8
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHc-CC--CeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCc
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAA-GA--SRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~-g~--~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
-++....+|||+|+|+||..++.++... +. ..|+.++..+.+.+..+.+|.... ...++ .+..+.+..+..++
T Consensus 8 ~~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda--dnv~~~l~aLl~~~- 84 (480)
T 2ph5_A 8 KKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP--QNYLEVIGSTLEEN- 84 (480)
T ss_dssp TCBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT--TTHHHHTGGGCCTT-
T ss_pred ceecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc--hhHHHHHHHHhcCC-
Confidence 3455677899999999999988777654 44 368888777666666666675433 22222 45555565555444
Q ss_pred cEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 266 DYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 266 d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+|++++-....+..+-.|+..+ -.++....
T Consensus 85 DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~ 115 (480)
T 2ph5_A 85 DFLIDVSIGISSLALIILCNQKG-ALYINAAT 115 (480)
T ss_dssp CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence 99999876655566666777775 66666654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.016 Score=49.74 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhc-CCCccEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLT-DGGVDYSF 269 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~-~~g~d~vi 269 (379)
+.++++||-+|+|. |..+..+++. |+ +|++++.+++..+.+++.... .++..+-. ..+ ... .+.||+|+
T Consensus 46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-----~~~~~~~fD~v~ 116 (226)
T 3m33_A 46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGK-GEL-----PAGLGAPFGLIV 116 (226)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSC-SSC-----CTTCCCCEEEEE
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchh-hcc-----CCcCCCCEEEEE
Confidence 46789999998863 6677777776 77 999999999998888875322 22222110 000 122 34799999
Q ss_pred EcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 270 ECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 270 d~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
........+..+.+.|+++ |+++..+.
T Consensus 117 ~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 143 (226)
T 3m33_A 117 SRRGPTSVILRLPELAAPD-AHFLYVGP 143 (226)
T ss_dssp EESCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred eCCCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence 8766667789999999997 99995543
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0062 Score=53.93 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=47.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
.|+++||+|+ |++|.++++.+...|+ +|++++++.++.+....+ ..|..+ .......+.+.. .+++|++++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~-~~~~~~~~~~~~~~~g~iD~lvn 100 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE-AAYADGLPGAVAAGLGRLDIVVN 100 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS-HHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 4789999988 9999999999999999 899998876543211111 112222 112222222211 137999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 101 nAg~ 104 (266)
T 3uxy_A 101 NAGV 104 (266)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9884
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.032 Score=48.75 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=67.1
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCc--eEeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVT--EFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~--~v~~~~~~~~~~~~~i~~ 259 (379)
+.......++.+||-+|+| .|..+..+++. +. +|++++.+++..+.+++. |.. .++..+. .++ .
T Consensus 29 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~l-----~ 98 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----P 98 (260)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----C
T ss_pred HHHHhCCCCCCEEEEEeCC-CCHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH--HhC-----C
Confidence 3445567789999999986 57777777765 44 999999999888777653 322 1222211 111 1
Q ss_pred hcCCCccEEEEcCCC------HHHHHHHHHHhccCCceEEEEc
Q 016978 260 LTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 260 ~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.++.||+|+....- ...+..+.+.|+++ |+++...
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~ 140 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 140 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence 223479999965332 46789999999997 9998764
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.018 Score=50.70 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLG-TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag-~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..+||+.......+ +..+ -.|++|+|+|.| .+|..+++++...|+ +|+.+.+.. .
T Consensus 130 ~~~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t---------------------~ 185 (276)
T 3ngx_A 130 FLVPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKT---------------------K 185 (276)
T ss_dssp SSCCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------S
T ss_pred CCCCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCc---------------------c
Confidence 34555544445443 4344 789999999995 699999999999999 888874321 2
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++.+.+++ +|+||.++|.+..+.. ..++++ ..++.+|..
T Consensus 186 ~L~~~~~~-----ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 224 (276)
T 3ngx_A 186 DIGSMTRS-----SKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN 224 (276)
T ss_dssp CHHHHHHH-----SSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred cHHHhhcc-----CCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence 34444433 7999999998665433 447885 888888764
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.023 Score=50.31 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=64.6
Q ss_pred ccccccchhhhhhhhhccC-CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHD 250 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~ 250 (379)
..+||+.......| +..+ --.|++|+|+|. +.+|..+++++...|+ +|+.+.+..
T Consensus 139 ~~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T--------------------- 195 (286)
T 4a5o_A 139 LLRPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFT--------------------- 195 (286)
T ss_dssp SSCCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred CCCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCC---------------------
Confidence 34555544444433 4333 347999999998 4599999999999999 888774321
Q ss_pred chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 251 KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 251 ~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.++.+.++ .+|+||.++|.+.++.. +.++++ ..++.+|..
T Consensus 196 ~~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~ 235 (286)
T 4a5o_A 196 RDLADHVS-----RADLVVVAAGKPGLVKG--EWIKEG-AIVIDVGIN 235 (286)
T ss_dssp SCHHHHHH-----TCSEEEECCCCTTCBCG--GGSCTT-CEEEECCSC
T ss_pred cCHHHHhc-----cCCEEEECCCCCCCCCH--HHcCCC-eEEEEeccc
Confidence 12333333 38999999998765432 457886 888888864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.024 Score=49.91 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=65.1
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe--CCCCCCchHHHHHHHhcCC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV--NPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~--~~~~~~~~~~~~i~~~~~~ 263 (379)
+....++.++++||=+|+| .|..+..+++. |+ +|++++.+++-++.+++.-....+ +..+.+.. ......+
T Consensus 37 il~~l~l~~g~~VLDlGcG-tG~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~----~~~~~~~ 109 (261)
T 3iv6_A 37 DIFLENIVPGSTVAVIGAS-TRFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE----IPKELAG 109 (261)
T ss_dssp HHHTTTCCTTCEEEEECTT-CHHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC----CCGGGTT
T ss_pred HHHhcCCCCcCEEEEEeCc-chHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccc----cccccCC
Confidence 3455678899999999986 47777788774 77 899999999999888864332211 11110000 0011134
Q ss_pred CccEEEEcCC-----C---HHHHHHHHHHhccCCceEEEE
Q 016978 264 GVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 g~d~vid~~g-----~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.||+|+-... . ...+..+.+.+ ++ |+++..
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS 147 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS 147 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence 7999986432 1 23577777888 96 998754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.049 Score=46.50 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=65.1
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+...++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++ ..--.++..+...... . ....
T Consensus 67 ~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~~ 141 (227)
T 1g8a_A 67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE---Y-RALV 141 (227)
T ss_dssp CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG---G-TTTC
T ss_pred HhcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcch---h-hccc
Confidence 444578999999999875 8888889988752 489999999965554433 2111222222100100 0 0112
Q ss_pred CCccEEEEcCCCH----HHHHHHHHHhccCCceEEEE
Q 016978 263 GGVDYSFECIGNV----SVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 263 ~g~d~vid~~g~~----~~~~~~~~~l~~~~G~iv~~ 295 (379)
+.+|+|+-....+ ..+..+.+.|+++ |+++..
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 177 (227)
T 1g8a_A 142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred CCceEEEECCCCHhHHHHHHHHHHHhcCCC-CEEEEE
Confidence 3799998654443 2378899999997 998877
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.057 Score=46.14 Aligned_cols=97 Identities=16% Similarity=0.307 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-eEeCCCCCCchHHHHHHHhcCCCc
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.++++++||=+|+|..|..++.+++..+. +|++++.+++..+.+++ .+.. .++..+. .. +.....+.+
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~--~~----~~~~~~~~f 124 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG--GI----IKGVVEGTF 124 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS--CS----STTTCCSCE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc--hh----hhhcccCce
Confidence 46789999999888778888888887766 99999999988777764 3431 2332221 00 111223479
Q ss_pred cEEEEcCC----------------------C---HHHHHHHHHHhccCCceEEEE
Q 016978 266 DYSFECIG----------------------N---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 266 d~vid~~g----------------------~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+|+-... . ...+..+.+.|+++ |+++.+
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 178 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY 178 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 99984211 0 35678888889996 998875
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.021 Score=52.03 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=46.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
-+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+.+...+. |..+ . +.+.+... ++|+||++++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d--~---~~~~~~~~-~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD--H---AGLERALR-GLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC--H---HHHHHHTT-TCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC--H---HHHHHHHc-CCCEEEECCc
Confidence 37999998 9999999999988998 899998877654433333443321 2222 2 22333322 6999999987
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 87 ~ 87 (342)
T 2x4g_A 87 Y 87 (342)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.026 Score=49.55 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHHHh----cCCce-E--eCCCCCCchHHHHHHHhcC--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFDRAKN----FGVTE-F--VNPKDHDKPIQQVLVDLTD-- 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-~~~~~~~~~----lg~~~-v--~~~~~~~~~~~~~i~~~~~-- 262 (379)
.++++||+|+ |++|..+++.+...|+ +|+++.+. ++..+.+++ .+... + .|..+ ..++.+.+.+...
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK-KEDLHKIVEEAMSHF 83 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence 3688999988 9999999999999999 78887554 444444432 22222 2 23322 1233333333221
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++|+++|
T Consensus 84 g~id~lv~~Ag 94 (264)
T 3i4f_A 84 GKIDFLINNAG 94 (264)
T ss_dssp SCCCEEECCCC
T ss_pred CCCCEEEECCc
Confidence 37999999998
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.062 Score=47.26 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHc---CCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAA---GASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~---g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~ 261 (379)
+++|.+||=+|+| .|..+..+++.. |+ +|++++.+++-++.+++ .+... ++..+ +.++.
T Consensus 68 ~~~~~~vLDlGcG-tG~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D---------~~~~~ 136 (261)
T 4gek_A 68 VQPGTQVYDLGCS-LGAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---------IRDIA 136 (261)
T ss_dssp CCTTCEEEEETCT-TTHHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---------TTTCC
T ss_pred CCCCCEEEEEeCC-CCHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc---------ccccc
Confidence 7899999999986 477777788765 56 89999999988777764 33321 22211 11222
Q ss_pred CCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+|+|+-...- ..+++.+.+.|+|+ |++++.-.
T Consensus 137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~ 179 (261)
T 4gek_A 137 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK 179 (261)
T ss_dssp CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ccccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence 3468888753221 23588899999997 99987643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.054 Score=48.37 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHHHhcCC
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.+.++.+||-+|+| .|..+..+++..|+ +|++++.+++..+.+++ .|.. .++..+- .++ .+.++
T Consensus 79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~ 149 (297)
T 2o57_A 79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI-----PCEDN 149 (297)
T ss_dssp CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----SSCTT
T ss_pred CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc--ccC-----CCCCC
Confidence 67899999999986 57788888888788 99999999987776654 2321 2222211 110 11234
Q ss_pred CccEEEEcCCC------HHHHHHHHHHhccCCceEEEEcc
Q 016978 264 GVDYSFECIGN------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 264 g~d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+|+|+....- ...+..+.+.|+++ |+++....
T Consensus 150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 188 (297)
T 2o57_A 150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 188 (297)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 79999864321 45689999999997 99987743
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=95.45 E-value=0.023 Score=50.18 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=50.3
Q ss_pred CCCEEEEEc---CChHHHHHHHHHHHcCCCeEEEEcCChhH--HHHHHhcCCce-E--eCCCCCCchHHHHHH---HhcC
Q 016978 194 PGSIVAVFG---LGTVGLAVAEGAKAAGASRVIGIDIDPKK--FDRAKNFGVTE-F--VNPKDHDKPIQQVLV---DLTD 262 (379)
Q Consensus 194 ~g~~VlI~G---ag~vG~~a~~la~~~g~~~vi~v~~~~~~--~~~~~~lg~~~-v--~~~~~~~~~~~~~i~---~~~~ 262 (379)
.++++||+| +|++|.+.++.+...|+ +|+.+++++++ .+..++++... . .|..+ ..++.+.+. +..+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN-EEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC-HHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 478999997 48999999999999999 89998887765 23334454322 1 23332 122222222 2222
Q ss_pred --CCccEEEEcCC
Q 016978 263 --GGVDYSFECIG 273 (379)
Q Consensus 263 --~g~d~vid~~g 273 (379)
+++|++++++|
T Consensus 84 ~~~~iD~lv~nAg 96 (269)
T 2h7i_A 84 AGNKLDGVVHSIG 96 (269)
T ss_dssp TTCCEEEEEECCC
T ss_pred CCCCceEEEECCc
Confidence 16999999887
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.043 Score=47.77 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKF 232 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~ 232 (379)
.++++||+|+ +++|.+.++.+...|+ +|+.+ .+++++.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~ 45 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA 45 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHH
Confidence 5789999988 9999999999999999 77764 5555543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.017 Score=50.43 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhH----HHHHHhcCCceE-e--CCCCCCchHHHHHHHhc-
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKK----FDRAKNFGVTEF-V--NPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~----~~~~~~lg~~~v-~--~~~~~~~~~~~~i~~~~- 261 (379)
..++++|||+|+ |++|..++..+...|+ +|++++ ++.++ .+.+++.+.... + |..+ ..+..+.+.+..
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD-WDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC-HHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC-HHHHHHHHHHHHH
Confidence 356889999988 9999999999999999 787765 43332 223334444322 2 2222 122323333221
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 88 ~~g~id~lv~~Ag~ 101 (256)
T 3ezl_A 88 EVGEIDVLVNNAGI 101 (256)
T ss_dssp HTCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCC
Confidence 2379999999874
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.027 Score=45.65 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=67.5
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.+...+.++++||-+|+|. |..+..+++.. . ++++++.+++..+.+++..... ++. .+ .....+.+
T Consensus 10 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~v~~~~-----~d-----~~~~~~~~ 76 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGN-GFYCKYLLEFA-T-KLYCIDINVIALKEVKEKFDSVITLS-----DP-----KEIPDNSV 76 (170)
T ss_dssp HHHHHSSCCEEEEEETCTT-CTTHHHHHTTE-E-EEEEECSCHHHHHHHHHHCTTSEEES-----SG-----GGSCTTCE
T ss_pred HHhcCcCCCCeEEEECCCC-CHHHHHHHhhc-C-eEEEEeCCHHHHHHHHHhCCCcEEEe-----CC-----CCCCCCce
Confidence 3444577899999998863 66777777765 4 8999999999988888752211 221 12 22333479
Q ss_pred cEEEEcCCC------HHHHHHHHHHhccCCceEEEEcc
Q 016978 266 DYSFECIGN------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 266 d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+|+....- ...+..+.+.|+++ |+++....
T Consensus 77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 113 (170)
T 3i9f_A 77 DFILFANSFHDMDDKQHVISEVKRILKDD-GRVIIIDW 113 (170)
T ss_dssp EEEEEESCSTTCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEEEEccchhcccCHHHHHHHHHHhcCCC-CEEEEEEc
Confidence 999854322 35688999999997 99988754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.059 Score=49.30 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=55.4
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHHH---hcCCceE-eCCCCCCchHHHHHHHhcCCCc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KKFDRAK---NFGVTEF-VNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~----~~~~~~~---~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
..+|||+|+ |.+|..++..+...|. +|+++++++ ++.+.+. ..++..+ .|..+ ...+.+.+.+ .++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d-~~~l~~~~~~---~~~ 84 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE-QEAMEKILKE---HEI 84 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC-HHHHHHHHHH---TTC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC-HHHHHHHHhh---CCC
Confidence 358999998 9999999999999998 889988865 4544333 3455433 22322 1233333332 279
Q ss_pred cEEEEcCCCH--HHHHHHHHHhcc
Q 016978 266 DYSFECIGNV--SVMRAALECCHK 287 (379)
Q Consensus 266 d~vid~~g~~--~~~~~~~~~l~~ 287 (379)
|+||.+++.. .....+++.++.
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~~ 108 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMKA 108 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHHHH
Confidence 9999998862 122344455544
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.023 Score=51.78 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHH----HHHHh-cCCc-eEe--CCCCCCchHHHHHHHhcCCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF----DRAKN-FGVT-EFV--NPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~----~~~~~-lg~~-~v~--~~~~~~~~~~~~i~~~~~~g 264 (379)
.+.+|||+|+ |.+|..+++.+...|+ +|++++++.++. +.+.+ .+.. .++ |..+ ...+.+.+.. .+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~---~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD-ERALARIFDA---HP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC-HHHHHHHHHH---SC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC-HHHHHHHHhc---cC
Confidence 4579999988 9999999999999999 899998765432 11211 1222 222 2222 1223233322 37
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|+||++++.
T Consensus 79 ~d~vih~A~~ 88 (341)
T 3enk_A 79 ITAAIHFAAL 88 (341)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECccc
Confidence 9999999875
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.042 Score=49.38 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+.+|||+|+ |.+|..+++.+...|. +|+++++++.+.+ +. +.. ++..+ -. .+.+.+... ++|+||++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~D---l~-~~~~~~~~~-~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVSD---YT-LEDLINQLN-DVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEECC---CC-HHHHHHHTT-TCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEcc---cc-HHHHHHhhc-CCCEEEEccc
Confidence 368999998 9999999999999999 8999988855554 33 333 22222 23 445555444 7999999987
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 72 ~ 72 (311)
T 3m2p_A 72 T 72 (311)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.14 Score=44.73 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
+.+|+|+|+|++|..++..+...|..+++.++..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999999888888654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.037 Score=50.17 Aligned_cols=97 Identities=19% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--------e-EeCCCCCCchHHHHHHHhcCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--------E-FVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--------~-v~~~~~~~~~~~~~i~~~~~~ 263 (379)
...++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.-.. . -+.. .+..+.+.. ..+
T Consensus 107 ~~~~~VLdIG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~----~D~~~~l~~-~~~ 180 (314)
T 2b2c_A 107 PDPKRVLIIGGG-DGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC----GDGFEFLKN-HKN 180 (314)
T ss_dssp SSCCEEEEESCT-TSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC----SCHHHHHHH-CTT
T ss_pred CCCCEEEEEcCC-cCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE----ChHHHHHHh-cCC
Confidence 346899999875 366667777765545999999999988888864211 1 1111 234444433 334
Q ss_pred CccEEEEcCCC----------HHHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSFECIGN----------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.||+|+--... ..++..+.+.|+++ |.++.-.
T Consensus 181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~ 222 (314)
T 2b2c_A 181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG 222 (314)
T ss_dssp CEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence 89998843311 36688899999997 9998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.033 Score=50.94 Aligned_cols=69 Identities=28% Similarity=0.332 Sum_probs=45.4
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.++.+|||+|+ |.+|..+++.+...|+ +|+++++++++ .+...+ .|..+ .+ .+.+... ++|+||+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~------~~~~~~~~Dl~d--~~---~~~~~~~-~~d~vih 83 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRPSG------TGGEEVVGSLED--GQ---ALSDAIM-GVSAVLH 83 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSCCS------SCCSEEESCTTC--HH---HHHHHHT-TCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCC------CCccEEecCcCC--HH---HHHHHHh-CCCEEEE
Confidence 45678999998 9999999999999999 89999887664 233332 22222 22 2222222 6999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
+++.
T Consensus 84 ~A~~ 87 (347)
T 4id9_A 84 LGAF 87 (347)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8764
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.089 Score=46.44 Aligned_cols=78 Identities=9% Similarity=0.217 Sum_probs=49.5
Q ss_pred CCCEEEEEcC---ChHHHHHHHHHHHcCCCeEEEEcCChh---HHHHHH-hcCCceEe--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL---GTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAK-NFGVTEFV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga---g~vG~~a~~la~~~g~~~vi~v~~~~~---~~~~~~-~lg~~~v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.|+++||+|+ |++|..+++.+...|+ +|++++++++ ..+.+. +.+...++ |..+ ...+.+.+.+.. .
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 4789999976 6999999999988999 8999988764 333332 23422222 3332 122333333221 2
Q ss_pred CCccEEEEcCC
Q 016978 263 GGVDYSFECIG 273 (379)
Q Consensus 263 ~g~d~vid~~g 273 (379)
+++|++++++|
T Consensus 83 g~id~lv~nAg 93 (275)
T 2pd4_A 83 GSLDFIVHSVA 93 (275)
T ss_dssp SCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47999999887
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.15 Score=45.60 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=59.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.. + . .+..+.+. .+|+||.|+..+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~----~~~~~~~~-----~~D~vi~~vp~~ 71 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-A--C----ENNQKVAA-----ASDIIFTSLPNA 71 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-E--C----SSHHHHHH-----HCSEEEECCSSH
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-e--c----CCHHHHHh-----CCCEEEEECCCH
Confidence 479999999999998888888898 899999999888877766643 1 1 12222232 378999888765
Q ss_pred HHHHHHH-------HHhccCCceEEEEc
Q 016978 276 SVMRAAL-------ECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ~~~~~~~-------~~l~~~~G~iv~~g 296 (379)
..+...+ ..++++ ..++.++
T Consensus 72 ~~~~~v~~~~~~l~~~l~~~-~~vv~~~ 98 (301)
T 3cky_A 72 GIVETVMNGPGGVLSACKAG-TVIVDMS 98 (301)
T ss_dssp HHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred HHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence 5444444 345553 4555543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.063 Score=48.36 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC---------CceEeCCCCCCchHHHHHHHhcCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---------VTEFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg---------~~~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.++++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.- ...-+.. .+..+.+.....+
T Consensus 94 ~~~~~VLdiG~G-~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~----~D~~~~~~~~~~~ 168 (304)
T 3bwc_A 94 PKPERVLIIGGG-DGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV----GDGLAFVRQTPDN 168 (304)
T ss_dssp SSCCEEEEEECT-TSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE----SCHHHHHHSSCTT
T ss_pred CCCCeEEEEcCC-CCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE----CcHHHHHHhccCC
Confidence 567899999875 3666677777655559999999998888877632 1111111 2333333322344
Q ss_pred CccEEEEcCCC----------HHHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSFECIGN----------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.||+|+-.... ..++..+.+.|+++ |.++...
T Consensus 169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~ 210 (304)
T 3bwc_A 169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQG 210 (304)
T ss_dssp CEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence 89998843221 36788999999997 9998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.032 Score=51.30 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-Hhc----CCceE-eCCCCCCchHHHHHHHhcCCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNF----GVTEF-VNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~l----g~~~v-~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
.+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+ ..+ +...+ .|..+ ...+.+.+... .+|
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~---~~d 82 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-QNKLLESIREF---QPE 82 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-HHHHHHHHHHH---CCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccC-HHHHHHHHHhc---CCC
Confidence 3579999998 9999999998888999 899998876543221 111 22211 22222 12232333222 589
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+||++++.
T Consensus 83 ~vih~A~~ 90 (357)
T 1rkx_A 83 IVFHMAAQ 90 (357)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 99999883
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.1 Score=47.80 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
.+|.|+|.|.+|...+..++..|. +|++.++++++.+.++++|+... .+..+.+.+. ....|+||-|+...
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~-------~~~~e~~~~a-~~~aDlVilavP~~ 79 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS-------ADLEATLQRA-AAEDALIVLAVPMT 79 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE-------SCHHHHHHHH-HHTTCEEEECSCHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee-------CCHHHHHHhc-ccCCCEEEEeCCHH
Confidence 579999999999999999999998 89999999999999999987432 1233333321 01468999888753
Q ss_pred HHHHHHHHH---hccCCceEEEEcc
Q 016978 276 SVMRAALEC---CHKGWGTSVIVGV 297 (379)
Q Consensus 276 ~~~~~~~~~---l~~~~G~iv~~g~ 297 (379)
.+...+.. ++++ ..++.++.
T Consensus 80 -~~~~vl~~l~~~~~~-~iv~Dv~S 102 (341)
T 3ktd_A 80 -AIDSLLDAVHTHAPN-NGFTDVVS 102 (341)
T ss_dssp -HHHHHHHHHHHHCTT-CCEEECCS
T ss_pred -HHHHHHHHHHccCCC-CEEEEcCC
Confidence 33333322 3453 55555654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.039 Score=50.99 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHh-cCCceE-eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKN-FGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~-lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
+.+|||+|+ |.+|..+++.+... |+ +|++++++.++.+.+.+ .+...+ .|..+ +.+....+.+ ++|+||+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~-d~~~~~~~~~----~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITI-NKEWVEYHVK----KCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTT-CHHHHHHHHH----HCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCC-CHHHHHHHhc----cCCEEEE
Confidence 579999998 99999999888887 88 89999988776544333 233222 12220 1222222211 5999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
+++.
T Consensus 98 ~A~~ 101 (372)
T 3slg_A 98 LVAI 101 (372)
T ss_dssp CBCC
T ss_pred cCcc
Confidence 8774
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.18 Score=44.79 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=36.7
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
++|.|+|+|.+|...++.+...|+ +|++.++++++.+.+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 45 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK 45 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence 689999999999999999999999 89999999988776654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.028 Score=48.97 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=67.5
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHHHhcCC
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.+.++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++ .|.. .++..+- .++ ....+
T Consensus 43 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~-----~~~~~ 113 (257)
T 3f4k_A 43 ELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM--DNL-----PFQNE 113 (257)
T ss_dssp CCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSC-----SSCTT
T ss_pred cCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhC-----CCCCC
Confidence 578899999999974 8888899999887 99999999988777654 3432 1222211 111 11224
Q ss_pred CccEEEEc-----CCCHHHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSFEC-----IGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vid~-----~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.||+|+-. ......+..+.+.|+++ |+++...
T Consensus 114 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~ 150 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE 150 (257)
T ss_dssp CEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred CEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence 79999743 22356789999999997 9998764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.042 Score=52.16 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=67.8
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-eEeCCCCCCchHHHHHHHhcC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-EFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.....++|++||=.|+|+ |..+.++++.++..+|++++.++++.+.+++ +|.. .++..+. .++.. ....
T Consensus 240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~--~~~~~---~~~~ 313 (429)
T 1sqg_A 240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG--RYPSQ---WCGE 313 (429)
T ss_dssp HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT--TCTHH---HHTT
T ss_pred HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch--hhchh---hccc
Confidence 334578999999998865 7777788887753499999999998877654 4543 2332222 12211 1222
Q ss_pred CCccEEEE---cCCC-------------------------HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSFE---CIGN-------------------------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vid---~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.||.|+- |+|. ...+..+++.|+++ |+++...
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG-G~lvyst 374 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYAT 374 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence 47999884 5442 14577888889997 9988764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.074 Score=45.31 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-----------eEeCCCCCCchHHHHHHHh
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-----------EFVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-----------~v~~~~~~~~~~~~~i~~~ 260 (379)
++++++||-+|+|. |..+..+++. |+ +|++++.+++..+.+++.... .++..+. ..+ ..
T Consensus 28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~-----~~ 97 (235)
T 3sm3_A 28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA--SSL-----SF 97 (235)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT--TSC-----CS
T ss_pred CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc--ccc-----CC
Confidence 56889999999864 7777777776 77 999999999988888763221 1222211 110 11
Q ss_pred cCCCccEEEEcCC-----C-H---HHHHHHHHHhccCCceEEEEcc
Q 016978 261 TDGGVDYSFECIG-----N-V---SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 261 ~~~g~d~vid~~g-----~-~---~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
..+.+|+|+-... . . ..+..+.+.|+++ |+++....
T Consensus 98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 142 (235)
T 3sm3_A 98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEF 142 (235)
T ss_dssp CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence 2237999985321 2 2 5788999999997 99987744
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.041 Score=51.28 Aligned_cols=79 Identities=22% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHH-cCCCeEEEEcCChhH----------------HHHHHhcCCceE-e--CCCCCCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKA-AGASRVIGIDIDPKK----------------FDRAKNFGVTEF-V--NPKDHDK 251 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~-~g~~~vi~v~~~~~~----------------~~~~~~lg~~~v-~--~~~~~~~ 251 (379)
..++++||+|+ +++|++.+..+.. .|+ +|++++++.+. .+.+++.|.... + |..+ ..
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd-~~ 122 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFS-DE 122 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS-HH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCC-HH
Confidence 45788899988 9999998887777 999 88887664332 224455665432 2 2222 12
Q ss_pred hHH---HHHHHhcCCCccEEEEcCCC
Q 016978 252 PIQ---QVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 252 ~~~---~~i~~~~~~g~d~vid~~g~ 274 (379)
... +.+.+. .|++|++++++|.
T Consensus 123 ~v~~~v~~i~~~-~G~IDiLVNNAG~ 147 (405)
T 3zu3_A 123 IKQLTIDAIKQD-LGQVDQVIYSLAS 147 (405)
T ss_dssp HHHHHHHHHHHH-TSCEEEEEECCCC
T ss_pred HHHHHHHHHHHH-cCCCCEEEEcCcc
Confidence 222 233332 2579999998875
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.043 Score=47.77 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=68.4
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhcCC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAA-GASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
++......++.+||-+|+| .|..+..+++.. +. ++++++.+++..+.+++.... .++..+. .++ ...+
T Consensus 25 l~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~--~~~------~~~~ 94 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCG-PGNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL--ATW------KPAQ 94 (259)
T ss_dssp HHTTCCCSCCSSEEEETCT-TTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT--TTC------CCSS
T ss_pred HHHhcCCCCCCEEEEecCc-CCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh--hhc------CccC
Confidence 4555667789999999986 577777788776 55 899999999988888765322 2222221 111 0123
Q ss_pred CccEEEEcCC------CHHHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+|+|+.... ....+..+.+.|+++ |+++..-
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 132 (259)
T 2p35_A 95 KADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM 132 (259)
T ss_dssp CEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred CcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence 7999996432 145678888999997 9988763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.084 Score=49.73 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCc
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
+.....+.++.+||=+|+|. |..+..+++ .|. +|++++.+++-.+.+++.+.......-. .+..+.+. ...+.|
T Consensus 99 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~--~~~~~~l~-~~~~~f 172 (416)
T 4e2x_A 99 FLATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE--KATADDVR-RTEGPA 172 (416)
T ss_dssp HHHTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS--HHHHHHHH-HHHCCE
T ss_pred HHHHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec--hhhHhhcc-cCCCCE
Confidence 34556677899999998853 556666665 477 9999999999999999887655433221 22222222 223479
Q ss_pred cEEEEcCC------CHHHHHHHHHHhccCCceEEEE
Q 016978 266 DYSFECIG------NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 266 d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|+|+-... ...++..+.+.|+++ |.++..
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~ 207 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE 207 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence 99986432 146789999999997 998865
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.1 Score=51.77 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=63.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHhcCCceEeCCCCC---CchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKNFGVTEFVNPKDH---DKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~~~lg~~~v~~~~~~---~~~~~~~i~~~~~~g~d~ 267 (379)
.|+++||+|+ +++|.+.++.+...|+ +|++.++.. +-.+.+++.|...+....+. ...+.+.+.+.. +.+|+
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~-G~iDi 398 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKY-GTIDI 398 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhc-CCCCE
Confidence 4788999988 9999999999999999 888886422 22334445565443333221 012223333322 47999
Q ss_pred EEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccC
Q 016978 268 SFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 268 vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
+++++|-. ...+.++..++. ++|+||.++..
T Consensus 399 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ 455 (604)
T 2et6_A 399 LVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST 455 (604)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence 99998840 124455555532 24899988653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.012 Score=54.77 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh---HHHHHHhcCCce---EeCCCCCCchHHHHHHHhcCCC
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK---KFDRAKNFGVTE---FVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~---~~~~~~~lg~~~---v~~~~~~~~~~~~~i~~~~~~g 264 (379)
..-+|++||-+|+|. |++++ +|...|+++|++++.++- .++.++..|... ++..+. .++ ..+++
T Consensus 80 ~~~~~k~VLDvG~Gt-GiLs~-~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~--~~~------~lpe~ 149 (376)
T 4hc4_A 80 AALRGKTVLDVGAGT-GILSI-FCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPV--ETV------ELPEQ 149 (376)
T ss_dssp HHHTTCEEEEETCTT-SHHHH-HHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT--TTC------CCSSC
T ss_pred HhcCCCEEEEeCCCc-cHHHH-HHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeee--eee------cCCcc
Confidence 345799999999863 55554 444579889999998752 223334445432 232221 111 11248
Q ss_pred ccEEEE-cCCC--------HHHHHHHHHHhccCCceEE
Q 016978 265 VDYSFE-CIGN--------VSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 265 ~d~vid-~~g~--------~~~~~~~~~~l~~~~G~iv 293 (379)
+|+|+- ..|. +..+...-+.|+++ |.++
T Consensus 150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~-G~~i 186 (376)
T 4hc4_A 150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG-GLLL 186 (376)
T ss_dssp EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE-EEEE
T ss_pred ccEEEeecccccccccchhhhHHHHHHhhCCCC-ceEC
Confidence 999984 2222 23445555789996 8875
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.16 Score=46.89 Aligned_cols=71 Identities=13% Similarity=0.266 Sum_probs=51.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.. . .+..+.+... ..+|+||-|+..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~---~----~s~~e~~~~a--~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAG---A----RSIEEFCAKL--VKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBC---C----SSHHHHHHHS--CSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEE---e----CCHHHHHhcC--CCCCEEEEeCCH
Confidence 4689999999999999999999998 8999999999988888776531 1 2233333321 134777777766
Q ss_pred H
Q 016978 275 V 275 (379)
Q Consensus 275 ~ 275 (379)
.
T Consensus 92 ~ 92 (358)
T 4e21_A 92 A 92 (358)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.079 Score=47.26 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=49.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcC-CCeEEEEcCChhHH--HHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAG-ASRVIGIDIDPKKF--DRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g-~~~vi~v~~~~~~~--~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
..+|||+|+ |.+|..+++.+...| + +|+++++++++. +.+...++..+. |..+ . +.+.+... ++|+||
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d--~---~~l~~~~~-~~d~vi 77 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD--Q---VIMELALN-GAYATF 77 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC--H---HHHHHHHT-TCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC--H---HHHHHHHh-cCCEEE
Confidence 478999998 999999998888888 7 899998887653 233344554332 3322 2 22333222 589999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
.+++.
T Consensus 78 ~~a~~ 82 (299)
T 2wm3_A 78 IVTNY 82 (299)
T ss_dssp ECCCH
T ss_pred EeCCC
Confidence 99874
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.051 Score=52.00 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=51.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH---HHHHHhcCCceE-eCCCCCCchHHHHHH---HhcCCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK---FDRAKNFGVTEF-VNPKDHDKPIQQVLV---DLTDGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~---~~~~~~lg~~~v-~~~~~~~~~~~~~i~---~~~~~g~ 265 (379)
+|+++||+|+ |++|...++.+...|+ +|+.+++++.. .+...+.+...+ .|..+ .......+. +...+.+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd-~~~v~~~~~~~~~~~g~~i 289 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGTALTLDVTA-DDAVDKITAHVTEHHGGKV 289 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCEEEECCTTS-TTHHHHHHHHHHHHSTTCC
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHHcCCCc
Confidence 5789999987 9999998888888899 89888775432 233345555432 23333 233333333 3322249
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++|+++|.
T Consensus 290 d~lV~nAGv 298 (454)
T 3u0b_A 290 DILVNNAGI 298 (454)
T ss_dssp SEEEECCCC
T ss_pred eEEEECCcc
Confidence 999999885
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.1 Score=44.70 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=66.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc---eEeCCCCCCchHHHHHHHhcC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT---EFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~---~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+.......++.+||-+|+|. |..+..+++. |..++++++.+++..+.+++.... .++..+- .++ ....
T Consensus 35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~-----~~~~ 105 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL--DKL-----HLPQ 105 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG--GGC-----CCCT
T ss_pred HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh--hhc-----cCCC
Confidence 34445566889999998863 6666677665 655899999999999988875432 1221111 110 1123
Q ss_pred CCccEEEEcCCC------HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.+|+|+....- ...+..+.+.|+++ |+++..-
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~ 144 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST 144 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence 379999864321 45688899999997 9988653
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.049 Score=47.98 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH----HhcCCce-E--eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGID-IDPKKFDRA----KNFGVTE-F--VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~-~~~~~~~~~----~~lg~~~-v--~~~~~~~~~~~~~i~~~~--~ 262 (379)
.++++||+|+ |++|..+++.+...|+ +|++++ +..++.+.. ++.+... + .|..+ ..+..+.+.+.. .
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD-FESCERCAEKVLADF 101 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHc
Confidence 4688999988 9999999999989999 888886 444443322 2233322 2 23322 122222232221 1
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++|+++|.
T Consensus 102 g~id~li~nAg~ 113 (269)
T 3gk3_A 102 GKVDVLINNAGI 113 (269)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 379999999874
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.084 Score=50.38 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEe--CCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFV--NPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~--~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+.+|+|+|+|.+|..+++.+...|+ +|++++++.++.+.+.+ ++....+ +..+ ..++.+.+ . ++|+|++|
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d-~~~l~~~l----~-~~DvVIn~ 75 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND-DAALDAEV----A-KHDLVISL 75 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC-HHHHHHHH----T-TSSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC-HHHHHHHH----c-CCcEEEEC
Confidence 5789999999999998888888898 79999898877655433 3321222 2222 01222222 2 69999999
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
++.
T Consensus 76 a~~ 78 (450)
T 1ff9_A 76 IPY 78 (450)
T ss_dssp CC-
T ss_pred Ccc
Confidence 986
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.022 Score=54.47 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=66.6
Q ss_pred ccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHhc
Q 016978 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 189 ~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~~ 261 (379)
...+++|++||-+|+|+ |..+.++++.++- .+|++++.++.+.+.+++ +|... ++..+. .++. ..+.
T Consensus 254 ~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~--~~~~---~~~~ 327 (450)
T 2yxl_A 254 VLDPKPGETVVDLAAAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA--RKAP---EIIG 327 (450)
T ss_dssp HHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT--TCCS---SSSC
T ss_pred hcCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh--hhcc---hhhc
Confidence 34578999999998865 6777788887753 489999999998877654 46532 222221 1110 0011
Q ss_pred CCCccEEEE---cCCC-------------------------HHHHHHHHHHhccCCceEEEEc
Q 016978 262 DGGVDYSFE---CIGN-------------------------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 ~~g~d~vid---~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.||.|+- |+|. ...+..+...|+++ |+++...
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvy~t 389 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG-GRLLYTT 389 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence 136999884 4443 24578888899997 9998654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.071 Score=49.26 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=80.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHc-CCCeEEE-EcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAA-GASRVIG-IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~-g~~~vi~-v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
-+|.|+|+|.+|...+..++.. ++ ++++ +++++++.+.++++|+. + + .++.+.+.+ ..+|+|+.|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~--~----~~~~~ll~~---~~~D~V~i~tp 74 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-I--Y----ESYEAVLAD---EKVDAVLIATP 74 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-B--C----SCHHHHHHC---TTCCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-e--e----CCHHHHhcC---CCCCEEEEcCC
Confidence 3688999999999877777766 56 5655 57888888877777763 2 2 234444432 36999999998
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCCCCcccccC-cceeee--ccEEEeeecCCCcccccHHHHHHHHHcCCCC
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTR-PFQLVT--GRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 344 (379)
.......+..++.. |+-|++..+.....-... ...... ++.+.-. ...+....+..+.+++++|.+-
T Consensus 75 ~~~h~~~~~~al~a--GkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~--~~~r~~p~~~~~k~~i~~g~iG 144 (359)
T 3e18_A 75 NDSHKELAISALEA--GKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVH--QNRRWDEDFLIIKEMFEQKTIG 144 (359)
T ss_dssp GGGHHHHHHHHHHT--TCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEE--CGGGGCHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHHHHHC--CCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEE--eeeccCHHHHHHHHHHHcCCCC
Confidence 87667777787777 555666443211100000 001111 2222111 1122334677788888888765
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.033 Score=55.53 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC---------ChhHHH----HHHhcCCceEeCCCCCCchHHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI---------DPKKFD----RAKNFGVTEFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~---------~~~~~~----~~~~lg~~~v~~~~~~~~~~~~~i~~ 259 (379)
.|+++||+|+ +++|.+.+..+...|+ +|+++++ +.++.+ .+++.+...+.+..+ ..+..+.+.+
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d-~~~~~~~~~~ 95 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS-VIDGAKVIET 95 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC-GGGHHHHHC-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHHH
Confidence 4789999988 9999999999999999 8888865 333332 334456666666554 1333344443
Q ss_pred hcC--CCccEEEEcCCC
Q 016978 260 LTD--GGVDYSFECIGN 274 (379)
Q Consensus 260 ~~~--~g~d~vid~~g~ 274 (379)
... +.+|++|+++|.
T Consensus 96 ~~~~~g~iDiLVnnAGi 112 (613)
T 3oml_A 96 AIKAFGRVDILVNNAGI 112 (613)
T ss_dssp ---------CEECCCCC
T ss_pred HHHHCCCCcEEEECCCC
Confidence 322 379999999884
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.009 Score=53.16 Aligned_cols=70 Identities=7% Similarity=0.067 Sum_probs=48.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+++++|+|+|++|.+++..+...|+++|++++++.++.+.+.+ .. ... .+. .+.+.. ..+|+||+|++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~-~~~-------~~~-~~~~~~-~~aDiVInaTp 184 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NI-NKI-------NLS-HAESHL-DEFDIIINTTP 184 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CC-EEE-------CHH-HHHHTG-GGCSEEEECCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hc-ccc-------cHh-hHHHHh-cCCCEEEECcc
Confidence 57899999999999999999999999789999999887543332 11 111 121 122211 25899999976
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 185 ~ 185 (277)
T 3don_A 185 A 185 (277)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.081 Score=47.27 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF 238 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l 238 (379)
.++++||=+|+| .|..++.+++..+..+|++++.++.-.+.+++.
T Consensus 45 ~~~~~VLDiGCG-~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 45 FRGRDVLDLGCN-VGHLTLSIACKWGPSRMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp TTTSEEEEESCT-TCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred cCCCcEEEeCCC-CCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 468899999986 478888899988655999999999888887753
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.062 Score=49.65 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=37.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~ 219 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV 219 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence 48899999999999999999999999 899998875 3444555665
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.044 Score=50.52 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHH--cCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKA--AGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~--~g~~~vi~v~~~~~ 230 (379)
.+.+|||+|+ |.+|..++..+.. .|+ +|++++++..
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~ 47 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS 47 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence 4689999988 9999999988888 899 8999987554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.14 Score=44.04 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=59.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
....++|+|.|+|.+|...++.+...|. |+++++++++.+.++ .|...+. -+. .+ .+.+++..-.++|.|+-+
T Consensus 6 ~~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~~i~-gd~--~~-~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 6 VAKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGANFVH-GDP--TR-VSDLEKANVRGARAVIVD 78 (234)
T ss_dssp ----CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCEEEE-SCT--TC-HHHHHHTTCTTCSEEEEC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCeEEE-cCC--CC-HHHHHhcCcchhcEEEEc
Confidence 3456789999999999988888887776 888989888887777 6654332 222 11 123333322379999999
Q ss_pred CCCHHH---HHHHHHHhccCCceEEEE
Q 016978 272 IGNVSV---MRAALECCHKGWGTSVIV 295 (379)
Q Consensus 272 ~g~~~~---~~~~~~~l~~~~G~iv~~ 295 (379)
++.... +....+.+.+. .+++.-
T Consensus 79 ~~~d~~n~~~~~~a~~~~~~-~~iia~ 104 (234)
T 2aef_A 79 LESDSETIHCILGIRKIDES-VRIIAE 104 (234)
T ss_dssp CSCHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred CCCcHHHHHHHHHHHHHCCC-CeEEEE
Confidence 888432 22333445553 455544
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.049 Score=47.93 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhHHHH----HHhcCCce-Ee--CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDR----AKNFGVTE-FV--NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~-v~~~~~~~~~----~~~lg~~~-v~--~~~~~~~~~~~~i~~~~--~ 262 (379)
.+++|||+|+ |++|..+++.+...|+ +|++ ..+++++.+. +++.+... ++ |..+ ..++.+.+.+.. .
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVAN-REQCREVLEHEIAQH 102 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHHh
Confidence 3689999988 9999999999999999 6655 5566554332 22334333 22 3222 122333333221 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++|+++|.
T Consensus 103 g~id~li~nAg~ 114 (267)
T 4iiu_A 103 GAWYGVVSNAGI 114 (267)
T ss_dssp CCCSEEEECCCC
T ss_pred CCccEEEECCCC
Confidence 379999999874
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=95.04 E-value=0.013 Score=53.52 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=47.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH----HHHHHhc------CCce-Ee--CCCCCCchHHHHHHHh
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNF------GVTE-FV--NPKDHDKPIQQVLVDL 260 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~----~~~~~~l------g~~~-v~--~~~~~~~~~~~~i~~~ 260 (379)
+++|||+|+ |++|..++..+...|+ +|+.+.++.++ .+.++.. +... ++ |..+ ..++.+.+.+.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~ 79 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERV 79 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC-HHHHHHHHHHH
Confidence 578999988 9999999999999999 56665443322 2222222 1222 22 3332 23344444444
Q ss_pred cCCCccEEEEcCCC
Q 016978 261 TDGGVDYSFECIGN 274 (379)
Q Consensus 261 ~~~g~d~vid~~g~ 274 (379)
..+.+|++|+++|.
T Consensus 80 ~~g~iD~lVnnAG~ 93 (327)
T 1jtv_A 80 TEGRVDVLVCNAGL 93 (327)
T ss_dssp TTSCCSEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 33579999998873
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.057 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hHHH----HHHhcCCceEeCCCCCC--chHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---------KKFD----RAKNFGVTEFVNPKDHD--KPIQQVL 257 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~---------~~~~----~~~~lg~~~v~~~~~~~--~~~~~~i 257 (379)
.|+++||+|+ +++|.+.++.+...|+ +|++.+++. ++.+ .+++.|...+.+..+.. ..+.+.+
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~ 85 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA 85 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 4788999988 9999999999999999 888887643 3332 23344555555554421 1233333
Q ss_pred HHhcCCCccEEEEcCCC
Q 016978 258 VDLTDGGVDYSFECIGN 274 (379)
Q Consensus 258 ~~~~~~g~d~vid~~g~ 274 (379)
.+.. +.+|++++++|-
T Consensus 86 ~~~~-G~iDiLVnNAGi 101 (604)
T 2et6_A 86 VKNF-GTVHVIINNAGI 101 (604)
T ss_dssp HHHH-SCCCEEEECCCC
T ss_pred HHHc-CCCCEEEECCCC
Confidence 3322 479999999884
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.14 Score=46.53 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=57.0
Q ss_pred EEEEEcCChHHHHH-HHHHHHcCCCeEE-EEcCChhHHH-HHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGLGTVGLAV-AEGAKAAGASRVI-GIDIDPKKFD-RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Gag~vG~~a-~~la~~~g~~~vi-~v~~~~~~~~-~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|.|+|+|.+|... +..+...+. +++ ++++++++.+ +++++|...++ .++.+.+.+ ..+|+|+.++.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~------~~~~~~l~~---~~~D~V~i~tp 71 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV------TSVEELVGD---PDVDAVYVSTT 71 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB------SCHHHHHTC---TTCCEEEECSC
T ss_pred eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc------CCHHHHhcC---CCCCEEEEeCC
Confidence 58899999999875 533333777 555 5677777664 45567764222 223333221 26999999998
Q ss_pred CHHHHHHHHHHhccCCceEEEEcc
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.......+..++.. |+-|++..
T Consensus 72 ~~~h~~~~~~al~~--Gk~v~~ek 93 (332)
T 2glx_A 72 NELHREQTLAAIRA--GKHVLCEK 93 (332)
T ss_dssp GGGHHHHHHHHHHT--TCEEEECS
T ss_pred hhHhHHHHHHHHHC--CCeEEEeC
Confidence 86666777777776 56555543
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.055 Score=51.00 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=50.0
Q ss_pred cCCCCCCEEEEEcC-ChHHHH--HHHHHHHcCCCeEEEEcCChh---------------H-HHHHHhcCCceE---eCCC
Q 016978 190 AKVEPGSIVAVFGL-GTVGLA--VAEGAKAAGASRVIGIDIDPK---------------K-FDRAKNFGVTEF---VNPK 247 (379)
Q Consensus 190 ~~~~~g~~VlI~Ga-g~vG~~--a~~la~~~g~~~vi~v~~~~~---------------~-~~~~~~lg~~~v---~~~~ 247 (379)
.....|+++||+|+ +++|++ .+..+...|+ +|++++++.+ . .+.+++.|.... .|..
T Consensus 55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt 133 (418)
T 4eue_A 55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAF 133 (418)
T ss_dssp CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCC
Confidence 34567899999988 999998 4444445599 8888876432 1 234455665432 2332
Q ss_pred CCCchHHHHHHHhc--CCCccEEEEcCCC
Q 016978 248 DHDKPIQQVLVDLT--DGGVDYSFECIGN 274 (379)
Q Consensus 248 ~~~~~~~~~i~~~~--~~g~d~vid~~g~ 274 (379)
+ ..+..+.+.... .+++|++++++|.
T Consensus 134 d-~~~v~~~v~~i~~~~G~IDiLVnNAG~ 161 (418)
T 4eue_A 134 S-NETKDKVIKYIKDEFGKIDLFVYSLAA 161 (418)
T ss_dssp C-HHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred C-HHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 2 122333333322 2479999998876
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.037 Score=49.89 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
..+..+|||+|+ |.+|..+++.+...|+ +|+++++++++ +. ++...+ .|..+ ...+.+.+.. +++|+||
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~d-~~~~~~~~~~---~~~d~vi 79 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIMD-SQRVKKVISD---IKPDYIF 79 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTTC-HHHHHHHHHH---HCCSEEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCCC-HHHHHHHHHh---cCCCEEE
Confidence 456789999988 9999999999988999 89999887654 21 232222 12222 1223233322 2589999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
++++.
T Consensus 80 h~A~~ 84 (321)
T 2pk3_A 80 HLAAK 84 (321)
T ss_dssp ECCSC
T ss_pred EcCcc
Confidence 99874
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.066 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~ 233 (379)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~ 210 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHA 210 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHH
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchh
Confidence 47899999999999999999999999 9999988764443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.063 Score=48.16 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-----hhHHHHHH---hcCCceE-eCCCCCCchHHHHHHHhcCCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-----PKKFDRAK---NFGVTEF-VNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-----~~~~~~~~---~lg~~~v-~~~~~~~~~~~~~i~~~~~~g 264 (379)
..+|||+|+ |.+|..++..+...|+ +|++++++ +++.+.++ ..++..+ .|..+ . +.+.+... +
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~---~~l~~~~~-~ 76 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD--H---QRLVDALK-Q 76 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC--H---HHHHHHHT-T
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCC--H---HHHHHHHh-C
Confidence 357999998 9999999999988998 89998887 44444333 2344322 12222 2 22333222 6
Q ss_pred ccEEEEcCCCH------HHHHHHHHHhccC--CceEE
Q 016978 265 VDYSFECIGNV------SVMRAALECCHKG--WGTSV 293 (379)
Q Consensus 265 ~d~vid~~g~~------~~~~~~~~~l~~~--~G~iv 293 (379)
+|+||++++.. .....+++.+... -.++|
T Consensus 77 ~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 77 VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred CCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 99999998752 1234445555443 13666
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.056 Score=49.67 Aligned_cols=45 Identities=36% Similarity=0.450 Sum_probs=36.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +..+.+|+
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~ 211 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD-GVERALGL 211 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT-THHHHHTC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhHhhcCC
Confidence 57899999999999999999999999 89999876543 22344555
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.083 Score=47.22 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=47.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC------hhHHHHHH---hcCCceE-eCCCCCCchHHHHHHHhcCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID------PKKFDRAK---NFGVTEF-VNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~------~~~~~~~~---~lg~~~v-~~~~~~~~~~~~~i~~~~~~ 263 (379)
..+|||+|+ |.+|..++..+...|. +|++++++ +++.+.++ ..|+..+ .|..+ ...+.+.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d-~~~l~~~~~----- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD-HASLVEAVK----- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC-HHHHHHHHH-----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC-HHHHHHHHc-----
Confidence 367999998 9999999999999998 88888886 33443333 3454332 12222 122222221
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|+||++++.
T Consensus 77 ~~d~vi~~a~~ 87 (308)
T 1qyc_A 77 NVDVVISTVGS 87 (308)
T ss_dssp TCSEEEECCCG
T ss_pred CCCEEEECCcc
Confidence 58999999875
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.086 Score=47.35 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+.+|||+|+ |.+|..+++.+...|+ +|++++++.++. + ....|..+ ...+.+.+... ++|+||++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d-~~~~~~~~~~~---~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLD-SNAVHHIIHDF---QPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC--------------------------CHHHHHHH---CCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCC-HHHHHHHHHhh---CCCEEEECCc
Confidence 578999998 9999999998888898 899998765431 1 11112221 12232333322 5899999887
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 70 ~ 70 (315)
T 2ydy_A 70 E 70 (315)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.015 Score=50.19 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=58.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.+.+|||+|+ |.+|..+++.+...|+. +|+++++++++.+....-+...+ .|..+ . +.+.+... ++|+||+
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~---~~~~~~~~-~~d~vi~ 90 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK--L---DDYASAFQ-GHDVGFC 90 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG--G---GGGGGGGS-SCSEEEE
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC--H---HHHHHHhc-CCCEEEE
Confidence 3679999988 99999999988888873 68888887654322211122211 12211 1 12222222 6999999
Q ss_pred cCCCHH--------------HHHHHHHHhccC-CceEEEEccCC
Q 016978 271 CIGNVS--------------VMRAALECCHKG-WGTSVIVGVAA 299 (379)
Q Consensus 271 ~~g~~~--------------~~~~~~~~l~~~-~G~iv~~g~~~ 299 (379)
++|... ....+++.+.+. .+++|.++...
T Consensus 91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~ 134 (242)
T 2bka_A 91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 134 (242)
T ss_dssp CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence 998621 122333334332 26888887643
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.026 Score=49.79 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=62.9
Q ss_pred ccccccchhhhhhhhhccC-CCCCCEEEEEcCC-hHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 173 CLLGCGVPTGLGAVWNTAK-VEPGSIVAVFGLG-TVGLAVAEGAKAA--GASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~-~~~g~~VlI~Gag-~vG~~a~~la~~~--g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
..+||+...+...+ +..+ --.|++++|+|+| .+|..+++++... |+ +|+.+.+..
T Consensus 136 ~~~PcTp~gi~~ll-~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t------------------- 194 (281)
T 2c2x_A 136 APLPCTPRGIVHLL-RRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT------------------- 194 (281)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC-------------------
T ss_pred CCCCChHHHHHHHH-HHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch-------------------
Confidence 34555444444433 3333 3579999999997 5799999999999 77 788773322
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.++.+.++ .+|+||-++|.+.++. -+.++++ ..++.+|..
T Consensus 195 --~~L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~ 234 (281)
T 2c2x_A 195 --RDLPALTR-----QADIVVAAVGVAHLLT--ADMVRPG-AAVIDVGVS 234 (281)
T ss_dssp --SCHHHHHT-----TCSEEEECSCCTTCBC--GGGSCTT-CEEEECCEE
T ss_pred --hHHHHHHh-----hCCEEEECCCCCcccC--HHHcCCC-cEEEEccCC
Confidence 22333332 3899999999876433 2347885 888888765
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.21 Score=45.08 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=38.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHHhcCCc
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRAKNFGVT 241 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~--~~~~~~~~~lg~~ 241 (379)
.+|.|+|+|.+|...++.+...|..+|++.+++ +++.+.+++.|+.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~ 72 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS 72 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCE
Confidence 579999999999998888888897689999886 5788888877753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=47.09 Aligned_cols=75 Identities=20% Similarity=0.149 Sum_probs=46.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----------hHHHHHHh-cC--CceE-eCCCCCCchHHHHHHH
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----------KKFDRAKN-FG--VTEF-VNPKDHDKPIQQVLVD 259 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~----------~~~~~~~~-lg--~~~v-~~~~~~~~~~~~~i~~ 259 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++++.. +..+.+++ .+ ...+ .|..+ ...+.+.+.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILD-QGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTC-HHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCC-HHHHHHHHHh
Confidence 468999988 9999999988888898 888887632 23333332 12 2222 22222 1223333332
Q ss_pred hcCCCccEEEEcCCC
Q 016978 260 LTDGGVDYSFECIGN 274 (379)
Q Consensus 260 ~~~~g~d~vid~~g~ 274 (379)
. ++|+||++++.
T Consensus 80 ~---~~d~vih~A~~ 91 (348)
T 1ek6_A 80 Y---SFMAVIHFAGL 91 (348)
T ss_dssp C---CEEEEEECCSC
T ss_pred c---CCCEEEECCCC
Confidence 1 69999999874
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.066 Score=48.93 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
-.|.+|.|+|.|.+|...++.++..|. +|++.+++.++ +.+.++|+
T Consensus 144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~ 189 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA 189 (333)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence 357899999999999999999999999 89999988775 44444443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.18 Score=46.38 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=58.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHH--HHHHhc-CCceE-eC-CCCCCchHHHHHHHhcCCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKF--DRAKNF-GVTEF-VN-PKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~--~~~~~l-g~~~v-~~-~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++++++++. +.+.+. ++..+ .| ..+ .+ .+.+.. .++|+|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d--~~---~l~~~~-~~~d~V 77 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN--VP---LMDTLF-EGAHLA 77 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC--HH---HHHHHH-TTCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccCC--HH---HHHHHH-hcCCEE
Confidence 568999998 9999999988888898 899888877654 333332 33222 22 222 22 222222 258999
Q ss_pred EEcCCCH-----HHHHHHHHHhccC--CceEEEEccC
Q 016978 269 FECIGNV-----SVMRAALECCHKG--WGTSVIVGVA 298 (379)
Q Consensus 269 id~~g~~-----~~~~~~~~~l~~~--~G~iv~~g~~ 298 (379)
|.+.+.. .....+++.+... -+++|.++..
T Consensus 78 i~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 78 FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp EECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 9876542 1224445545443 1488888754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.1 Score=43.51 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce-EeCCCCCCchHHHHHHHhcCCCcc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~-v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
+.++ +||-+|+|. |..+..+++. |+ ++++++.+++..+.+++. +... ++..+- .++ ....+.+|
T Consensus 28 ~~~~-~vLdiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~-----~~~~~~fD 96 (202)
T 2kw5_A 28 IPQG-KILCLAEGE-GRNACFLASL-GY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL--ADF-----DIVADAWE 96 (202)
T ss_dssp SCSS-EEEECCCSC-THHHHHHHTT-TC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT--TTB-----SCCTTTCS
T ss_pred CCCC-CEEEECCCC-CHhHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh--hhc-----CCCcCCcc
Confidence 4567 999998864 7777777765 77 999999999888777653 3222 222211 111 11234799
Q ss_pred EEEEcCCC------HHHHHHHHHHhccCCceEEEEcc
Q 016978 267 YSFECIGN------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 267 ~vid~~g~------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+.+... ...+..+.+.|+++ |.++....
T Consensus 97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~ 132 (202)
T 2kw5_A 97 GIVSIFCHLPSSLRQQLYPKVYQGLKPG-GVFILEGF 132 (202)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTCCSS-EEEEEEEE
T ss_pred EEEEEhhcCCHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 99875332 34578888889997 99887754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.14 Score=43.78 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=63.6
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChh----HHHHHHhcCCceEeCCCCCCchHHHHHHHhcC
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPK----KFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~----~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
+...++++++||-+|+|. |..+..+++..| ..+|++++.+++ ..+.++...--.++..+..... ......
T Consensus 71 ~~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~----~~~~~~ 145 (233)
T 2ipx_A 71 DQIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPH----KYRMLI 145 (233)
T ss_dssp SCCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGG----GGGGGC
T ss_pred heecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChh----hhcccC
Confidence 445678899999999875 888888998874 248999999965 3444444321122322221110 001123
Q ss_pred CCccEEEEcCCCH----HHHHHHHHHhccCCceEEE
Q 016978 263 GGVDYSFECIGNV----SVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 263 ~g~d~vid~~g~~----~~~~~~~~~l~~~~G~iv~ 294 (379)
+.+|+|+-....+ ..+..+.+.|+++ |+++.
T Consensus 146 ~~~D~V~~~~~~~~~~~~~~~~~~~~Lkpg-G~l~i 180 (233)
T 2ipx_A 146 AMVDVIFADVAQPDQTRIVALNAHTFLRNG-GHFVI 180 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEE
T ss_pred CcEEEEEEcCCCccHHHHHHHHHHHHcCCC-eEEEE
Confidence 4799988654432 2256788899996 98876
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.033 Score=54.30 Aligned_cols=71 Identities=23% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.++++||+|+|++|.+++..+...|+ +|++++++.++.+.+ ++++.. ++...+ +.+.....+|++++++
T Consensus 363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~~~-~~~~~d--------l~~~~~~~~DilVN~a 432 (523)
T 2o7s_A 363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIGGK-ALSLTD--------LDNYHPEDGMVLANTT 432 (523)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTTC--CEETTT--------TTTC--CCSEEEEECS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCc-eeeHHH--------hhhccccCceEEEECC
Confidence 46789999999999999999999999 899999988776544 445432 222221 1111112589999998
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
|-
T Consensus 433 gv 434 (523)
T 2o7s_A 433 SM 434 (523)
T ss_dssp ST
T ss_pred CC
Confidence 75
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.083 Score=54.25 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHH-HcCCCeEEEEcCChh-------HHHHHHhcCCceEe---CCCCCCchHHHHHHH
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAK-AAGASRVIGIDIDPK-------KFDRAKNFGVTEFV---NPKDHDKPIQQVLVD 259 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~-~~g~~~vi~v~~~~~-------~~~~~~~lg~~~v~---~~~~~~~~~~~~i~~ 259 (379)
+.+++++||+|+ |++|...++.+. ..|+++|+.++++.. ..+.+++.|....+ |..+ ..+..+.+.+
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd-~~~v~~~~~~ 605 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVAD-RETLAKVLAS 605 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHT
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHH
Confidence 468999999987 999999887776 789977888888732 12334456765432 3322 2344455555
Q ss_pred hcCC-CccEEEEcCCC
Q 016978 260 LTDG-GVDYSFECIGN 274 (379)
Q Consensus 260 ~~~~-g~d~vid~~g~ 274 (379)
.... ++|++|+++|-
T Consensus 606 ~~~~~~id~lVnnAGv 621 (795)
T 3slk_A 606 IPDEHPLTAVVHAAGV 621 (795)
T ss_dssp SCTTSCEEEEEECCCC
T ss_pred HHHhCCCEEEEECCCc
Confidence 4444 79999999885
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.059 Score=46.33 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=46.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE--eCCCCCCchHHHHHHHhc-CCCccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF--VNPKDHDKPIQQVLVDLT-DGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v--~~~~~~~~~~~~~i~~~~-~~g~d~vid 270 (379)
+++|||+|+ |.+|..+++.+...|+ +|++++++++ ..++ .+ .|..+ ..++.+.+.+.. .+++|++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~----~~~~---~~~~~D~~~-~~~~~~~~~~~~~~~~~d~li~ 72 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE----GEDL---IYVEGDVTR-EEDVRRAVARAQEEAPLFAVVS 72 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC----SSSS---EEEECCTTC-HHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc----ccce---EEEeCCCCC-HHHHHHHHHHHHhhCCceEEEE
Confidence 578999988 9999999988888899 8999888765 1111 22 23322 123333333321 137999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 73 ~ag~ 76 (242)
T 1uay_A 73 AAGV 76 (242)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8773
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.039 Score=51.28 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.......+...+ .|..+ .+ .+.+... ++|+||+++
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d--~~---~~~~~~~-~~d~Vih~A 101 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLRV--ME---NCLKVTE-GVDHVFNLA 101 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTTS--HH---HHHHHHT-TCSEEEECC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchhhccCCceEEECCCCC--HH---HHHHHhC-CCCEEEECc
Confidence 578999998 9999999998888998 89999887654322222233222 22222 22 2222222 699999998
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
+.
T Consensus 102 ~~ 103 (379)
T 2c5a_A 102 AD 103 (379)
T ss_dssp CC
T ss_pred ee
Confidence 73
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 379 | ||||
| d1d1ta2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 3e-51 | |
| d1cdoa1 | 199 | b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase | 2e-50 | |
| d2fzwa1 | 197 | b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase | 4e-48 | |
| d1p0fa2 | 174 | c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog | 2e-45 | |
| d1p0fa1 | 198 | b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro | 2e-44 | |
| d1e3ia1 | 202 | b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase | 3e-44 | |
| d1e3ia2 | 174 | c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse ( | 1e-43 | |
| d2jhfa1 | 198 | b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase | 7e-43 | |
| d2jhfa2 | 176 | c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse ( | 8e-42 | |
| d2fzwa2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 4e-41 | |
| d1cdoa2 | 175 | c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga | 6e-36 | |
| d1f8fa1 | 194 | b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr | 4e-32 | |
| d1f8fa2 | 174 | c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase { | 1e-31 | |
| d1uufa1 | 179 | b.35.1.2 (A:3-144,A:313-349) Hypothetical protein | 4e-23 | |
| d1vj0a1 | 184 | b.35.1.2 (A:2-155,A:338-367) Hypothetical protein | 2e-22 | |
| d1llua1 | 175 | b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase | 5e-22 | |
| d1piwa1 | 192 | b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy | 4e-21 | |
| d1jqba2 | 174 | c.2.1.1 (A:1140-1313) Bacterial secondary alcohol | 3e-19 | |
| d1jvba1 | 177 | b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase | 4e-17 | |
| d1e3ja1 | 178 | b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor | 7e-17 | |
| d1kola1 | 201 | b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog | 8e-17 | |
| d1rjwa1 | 171 | b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase | 1e-14 | |
| d1pl8a1 | 185 | b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor | 9e-14 | |
| d1vj0a2 | 182 | c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T | 9e-14 | |
| d1h2ba1 | 171 | b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas | 2e-13 | |
| d1kola2 | 195 | c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps | 6e-12 | |
| d1jqba1 | 177 | b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon | 2e-11 | |
| d1h2ba2 | 172 | c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo | 5e-11 | |
| d1pl8a2 | 171 | c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh | 1e-09 | |
| d1uufa2 | 168 | c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc | 1e-08 | |
| d1e3ja2 | 170 | c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh | 4e-07 | |
| d1yb5a1 | 150 | b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas | 1e-06 | |
| d1iz0a1 | 131 | b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase | 2e-06 | |
| d1piwa2 | 168 | c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase | 3e-06 | |
| d1xa0a1 | 152 | b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo | 3e-05 | |
| d1gu7a1 | 175 | b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu | 1e-04 | |
| d1pqwa_ | 183 | c.2.1.1 (A:) Putative enoyl reductase domain of po | 4e-04 | |
| d1qora2 | 179 | c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher | 5e-04 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 6e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 6e-04 | |
| d1qora1 | 147 | b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas | 0.001 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 0.001 |
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 167 bits (423), Expect = 3e-51
Identities = 92/175 (52%), Positives = 118/175 (67%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
AP +KVCL+GCG TG GA T KV+PGS VFGLG VGL+V G K+AGASR+IGID
Sbjct: 2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
++ KF++A G TE ++PKD KPI +VL ++T V Y+FE IG++ M AL CH
Sbjct: 62 LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKK 341
+GTSV+VGV S + ++ P L TGR WKG FGG KSR VP LV +++ K
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 165 bits (418), Expect = 2e-50
Identities = 95/200 (47%), Positives = 129/200 (64%), Gaps = 1/200 (0%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+T G+VI CKAAVAWE NKPLVIE+++V P A E+RIKI+ T +CHTD Y +
Sbjct: 1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C K A
Sbjct: 61 GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGW-ANE 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
+ +M+ +++RF+ G+ + F+GTSTFSQYTVV+ ++VAKIDP LD+ + +
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179
Query: 182 GLGAVWNTAKVEPGSIVAVF 201
A+ + V
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 160 bits (404), Expect = 4e-48
Identities = 111/196 (56%), Positives = 132/196 (67%), Gaps = 1/196 (0%)
Query: 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP 64
+VI CKAAVAWE KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP
Sbjct: 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFP 61
Query: 65 CILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 124
ILGH AGIVESVGEGVT+++ GD VIP Y +C ECKFC + KTNLC K+R G G
Sbjct: 62 VILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG- 120
Query: 125 MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLG 184
+M D SRF+ GK I H+MGTSTFS+YTVV D+SVAKIDP +D+
Sbjct: 121 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINK 180
Query: 185 AVWNTAKVEPGSIVAV 200
A + V
Sbjct: 181 AFELMHSGKSIRTVVK 196
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 152 bits (384), Expect = 2e-45
Identities = 90/176 (51%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
APL+ CL+GCG TG GA NTAKV PGS AVFGLG VG + G KAAGASR+IG+
Sbjct: 1 APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
KF +A G TE +NPKD+DKPI +V+ + T+GGVDY+ EC G + M AL+ +
Sbjct: 60 THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
G G +V++G+A+ + + P L+TGR KG+ FGGFK +V LVD YMKK+
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 150 bits (379), Expect = 2e-44
Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 12/208 (5%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+ P
Sbjct: 2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FP ILGHEA G+VES+G GVT V+PGD VIP + +C C+ CKS +N C K
Sbjct: 61 FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK- 119
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTG 182
+M D SRF+ GKPIY+ MGTSTF++YTVV D++VAKIDP+ ++ + +
Sbjct: 120 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL--- 176
Query: 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAV 210
++ + G G + +
Sbjct: 177 -------DQINKAFELLSSGQGVRSIMI 197
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 150 bits (378), Expect = 3e-44
Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 7/201 (3%)
Query: 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL 62
T+G+VI CKAA+AW+ PL IE+++V+PP+A EVRI+++ T +C TD + L
Sbjct: 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD-PKKKAL 60
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
FP +LGHE AGIVESVG GVT +PGD VIP + +C+ CK C S TNLCGK+R
Sbjct: 61 FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 123 GV---MMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGV 179
+ +M DR SRF+ G+ IYHFMG S+FSQYTVV + ++A++D + LD +
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180
Query: 180 PTGLGAVWNTAKVEPGSIVAV 200
+ A+ ++ G +
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 147 bits (371), Expect = 1e-43
Identities = 86/176 (48%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
A L++VCL+GCG +G GA NTAKV PGS AVFGLG VGL+ G K AGASR+I ID
Sbjct: 1 ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
I+ +KF +AK G T+ +NP++ DKP+Q V+ +LT GGVDYS +C G ++AA++C
Sbjct: 61 INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
GWG+ +VG E++ ++ GR GT FGG+KS VP LV Y K+
Sbjct: 121 LGWGSCTVVGA--KVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKK 174
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 146 bits (368), Expect = 7e-43
Identities = 96/201 (47%), Positives = 120/201 (59%), Gaps = 5/201 (2%)
Query: 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
ST G+VI CKAAV WE KP IE+V+VAPP+A EVRIK++ T +C +D + SG
Sbjct: 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG 121
L GHEAAGIVES+GEGVT V+PGD VIP + +C +C+ CK + N C K +
Sbjct: 61 LPVIA-GHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 122 AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPT 181
G M D SRF+ GKPI+HF+GTSTFSQYTVV ++SVAKID LD L V
Sbjct: 120 RGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD---PLITHVLP 175
Query: 182 GLGAVWNTAKVEPGSIVAVFG 202
+ G +
Sbjct: 176 FEKINEGFDLLRSGESIRTIL 196
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 142 bits (359), Expect = 8e-42
Identities = 97/176 (55%), Positives = 124/176 (70%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
+PL+KVCL+GCG TG G+ AKV GS AVFGLG VGL+V G KAAGA+R+IG+D
Sbjct: 1 SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
I+ KF +AK G TE VNP+D+ KPIQ+VL ++++GGVD+SFE IG + M AL CC
Sbjct: 61 INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
+ +G SVIVGV Q +S P L++GR WKG FGGFKS+ VP LV +M K+
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 140 bits (354), Expect = 4e-41
Identities = 130/176 (73%), Positives = 148/176 (84%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
APLDKVCLLGCG+ TG GA NTAK+EPGS+ AVFGLG VGLAV G K AGASR+IG+D
Sbjct: 1 APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
I+ KF RAK FG TE +NP+D KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CH
Sbjct: 61 INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
KGWG SV+VGVAASG+EI+TRPFQLVTGR WKGTAFGG+KS VP LV +YM K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 127 bits (319), Expect = 6e-36
Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Query: 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID 226
APLD VCLLGCGV TG GA NTAKVEPGS AVFGLG VGLA G +AGA R+I +D
Sbjct: 1 APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60
Query: 227 IDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
++P KF++AK FG T+FVNP DH +PI QVL +T+GGVD+S EC+GNV VMR ALE C
Sbjct: 61 LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
KGWG SV+VG +++TRP QL+ GR WKG+ FGGFK + VP +V Y+ K+
Sbjct: 121 KGWGVSVLVGW-TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 117 bits (294), Expect = 4e-32
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
AAV ++ +++ PQ EV +K++ T +CHTD K P P +LG
Sbjct: 3 DIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLG 61
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
HE +GI+E++G VTE+Q GDHV+ Y C +C C +G C + G +G
Sbjct: 62 HEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120
Query: 129 RKSRFSINGK--PIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+ + HF S+F+ Y + + + K+ P D++ A+
Sbjct: 121 N-HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAI 179
Query: 187 WNTAKVEPGSIVAV 200
+ + I+ +
Sbjct: 180 DSRKGITLKPIIKI 193
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 115 bits (289), Expect = 1e-31
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
P++ + LGCG+ TG GA N KV P S +G G VGL+ AK GAS +I +DI
Sbjct: 2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61
Query: 228 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 287
+ + AK G T +N K D + ++TDGGV+++ E G+ +++
Sbjct: 62 VESRLELAKQLGATHVINSKTQD--PVAAIKEITDGGVNFALESTGSPEILKQG-VDALG 118
Query: 288 GWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342
G +VG G L+ G+ G G + +P LV Y + +
Sbjct: 119 ILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 93.1 bits (230), Expect = 4e-23
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 16/177 (9%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
KA A+ +PL D+ P +V+I+I + +CH+D + + ++PC+ GHE
Sbjct: 2 KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61
Query: 71 AAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDR 129
G V +VG+ V + PGD V + C C+ C+ C+ G N C + G T
Sbjct: 62 IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG-TYNSPT---- 116
Query: 130 KSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ-APLDKVCLLGCGVPTGLGA 185
P +SQ VVH+ V +I + + + L
Sbjct: 117 ---------PDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 91.4 bits (226), Expect = 2e-22
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 26/200 (13%)
Query: 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL 67
+ A V + N+PLV ++ +++ G + ++IL +C +D + + G+DP P IL
Sbjct: 3 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 62
Query: 68 GHEAAGIVESVGEGVTEVQPGD-----HVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
GHE AG V V ++ ++ C EC +CK K R G
Sbjct: 63 GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG- 121
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVSVAKIDPQAPLDKVCLLGCGVPT 181
+N S + H G +S + V+ + V K+ + L
Sbjct: 122 ---INRGCSEYP-------HLRG--CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-- 165
Query: 182 GLGAVWNTAKVEPGSIVAVF 201
+ V ++
Sbjct: 166 ---KALELMESREALKVILY 182
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 90.0 bits (222), Expect = 5e-22
Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 9 TCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCIL 67
T KAAV PL IE+V+V P G+V +KI + +CHTD + G P + P I
Sbjct: 5 TMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIP 64
Query: 68 GHEAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
GHE G V +VG GVT V+ GD V IP C C+ C +G LC
Sbjct: 65 GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLC------------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
+ + +++Y + V + P + + G + +
Sbjct: 112 ---------ESQQNTGYSVNGGYAEYVLADPNYVGIL----PKNVKATIHPGKLDDINQI 158
Query: 187 WNTAK--VEPGSIVAV 200
+ + G IV
Sbjct: 159 LDQMRAGQIEGRIVLE 174
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.0 bits (217), Expect = 4e-21
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 20/196 (10%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPP--QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILG 68
+ + + P ++ IKI +C +D + +G P ++G
Sbjct: 8 EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVG 67
Query: 69 HEAAGIVESVGEGVTE-VQPGDH-VIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
HE G V +G ++ G + C EC CK+ C
Sbjct: 68 HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYC------------- 114
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
K + + ++ ++ Y VH+ V I ++ + + GV +
Sbjct: 115 --TKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM 172
Query: 187 WNTAKVEPGSIVAVFG 202
V + +
Sbjct: 173 -EKGDVRYRFTLVGYD 187
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 81.9 bits (201), Expect = 3e-19
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 8/172 (4%)
Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
PL+ ++ + TG A +E GS V V G+G VGL GAK GA R+IG+
Sbjct: 2 PLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60
Query: 228 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 287
P + AK +G T+ +N + QV+ GVD G + A++
Sbjct: 61 RPICVEAAKFYGATDILNY-KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119
Query: 288 GWGTSVIVGVAASGQEISTRPFQLVTG---RVWKGTAFGGFKSRSQVPWLVD 336
G G + SG + + G + KG G R + L D
Sbjct: 120 G-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG--GRLRAERLRD 168
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 76.5 bits (187), Expect = 4e-17
Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL-------- 62
+A E KPL ++++ V P+ +V IK+ +CH+D + G+
Sbjct: 2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 63 FPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA 122
P LGHE AG +E VG+ V GD V C +C+ G+ +LC R
Sbjct: 62 LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPR----- 116
Query: 123 GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-VAKIDPQAPLDKVCLLGCGVPT 181
+++Y +V + K+ P+ +
Sbjct: 117 -----------------WLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159
Query: 182 GLGAV 186
+ +
Sbjct: 160 AIDNL 164
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 75.8 bits (185), Expect = 7e-17
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 12 AAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG---KDPEGLFPCILG 68
+AV ++ N L +E + P+ EV +++ + +C +D + + D P ++G
Sbjct: 4 SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62
Query: 69 HEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
HEA+G V VG+ V ++ GD V CR C+FCK GK NLC
Sbjct: 63 HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLC--------------- 107
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
+ ++Y V K+ + ++ + + A
Sbjct: 108 ------PDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-E 160
Query: 189 TAKVEPGSIVAVFG 202
A+ + + + V
Sbjct: 161 AARKKADNTIKVMI 174
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 76.1 bits (186), Expect = 8e-17
Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 28/218 (12%)
Query: 11 KAAVAWEPNKPLVIEDVQV-------APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLF 63
+ V K + ++ + V +K++ T +C +D + G
Sbjct: 3 RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQV 60
Query: 64 PCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAG 123
+LGHE G V G V +Q GD V + C C+ CK T +C V A G
Sbjct: 61 GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 120
Query: 124 VMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPT 181
++ ++Y +V D ++ K+ + + + V
Sbjct: 121 AYGYVDMGDWTG------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGV 168
Query: 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 219
+ ++ + A G F G V + K A
Sbjct: 169 QVISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 69.2 bits (168), Expect = 1e-14
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 32/196 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCIL-GH 69
KAAV + +PL I++V+ GEV ++I +CHTD + G P ++ GH
Sbjct: 2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 70 EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMND 128
E GIVE VG GVT ++ GD V IP + C C +C SG+ LC
Sbjct: 62 EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------- 106
Query: 129 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCL--LGCGVPTGLGAV 186
+ + +++Y V KI ++ L + L
Sbjct: 107 -------EHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQ 159
Query: 187 WNTAKVEPGSIVAVFG 202
G +V
Sbjct: 160 I------NGRVVLTLE 169
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (162), Expect = 9e-14
Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 28/193 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGL---FPCIL 67
+ V P L +E+ + P EV +++ +C +D + W P +L
Sbjct: 9 LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67
Query: 68 GHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMN 127
GHEA+G VE VG V ++PGD V A +FCK G+ NL + N
Sbjct: 68 GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGN 127
Query: 128 DRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVW 187
++ + K+ +
Sbjct: 128 ---------------------LCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163
Query: 188 NTAKVEPGSIVAV 200
T K G + +
Sbjct: 164 ETFKKGLGLKIML 176
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 66.9 bits (162), Expect = 9e-14
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 6/159 (3%)
Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
LD + + C T A + G V + G G +GL A++ GA VI I
Sbjct: 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62
Query: 229 PKKFDRAKNFGVTEFVNPKDH--DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286
P + A+ G +N ++ ++ + ++ G D+ E G+ + E
Sbjct: 63 PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122
Query: 287 KGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325
+G G + GVA + + ++ + V K F G
Sbjct: 123 RG-GFYSVAGVAVPQDPVPFKVYEWL---VLKNATFKGI 157
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 65.5 bits (158), Expect = 2e-13
Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 28/194 (14%)
Query: 11 KAAVAWEPNKPLVIEDVQV-APPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFP---CI 66
KAA E NKPL IEDV +V ++I +CHTD + G E L P
Sbjct: 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMM 126
LGHE G +E V EGV ++ GD VI C C++G+ C +
Sbjct: 61 LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLE--------- 111
Query: 127 NDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAV 186
F+++ SV K+ ++ + L +
Sbjct: 112 -------------FPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158
Query: 187 WNTAKVEPGSIVAV 200
G V +
Sbjct: 159 EKGEV--LGRAVLI 170
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 61.8 bits (149), Expect = 6e-12
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 18/159 (11%)
Query: 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228
+ + L +PTG A V PGS V V G G VGLA A A+ GA+ VI D++
Sbjct: 1 IRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59
Query: 229 PKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG--------------- 273
P + AK G D +Q+ L + VD + + +G
Sbjct: 60 PARLAHAKAQGFEIADLSLDTP-LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEA 118
Query: 274 NVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV 312
+V+ + ++ G I G+ + + +
Sbjct: 119 PATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI 156
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 33/203 (16%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHE 70
K NK L + + + + ++ L + C +D +T ILGHE
Sbjct: 2 KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60
Query: 71 AAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRK 130
A G V VG V + +PGD VI ++G
Sbjct: 61 AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNG--------------- 105
Query: 131 SRFSINGKPIYHFMGTSTFSQYTVVH--DVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN 188
+ + F +Y V+ D+++A + L K+ G +
Sbjct: 106 ----MLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHIEE 158
Query: 189 TAKVEPGSIVAVFGLGTVGLAVA 211
+ + L A
Sbjct: 159 A--------LLLMKDKPKDLIKA 173
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 58.8 bits (141), Expect = 5e-11
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 175 LGCGVPTGLGAVWNTAK-VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFD 233
L T AV A+ + PG+ VA+ G+G +G + K + VI +D+ +K
Sbjct: 12 LADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK 71
Query: 234 RAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSV 293
A+ G V+ + P++QV+ GV+ + + +G+ + + + G +
Sbjct: 72 LAERLGADHVVDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLI 128
Query: 294 IVGVAASGQEISTRPFQLVTGRV-WKGTAFGGFKSRSQVPWLVDKYMK 340
IVG G E+ ++++ V ++G+ G + ++ LV ++
Sbjct: 129 IVGY---GGELRFPTIRVISSEVSFEGSLVG---NYVELHELVTLALQ 170
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 1e-09
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 181 TGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240
G+ A V G V V G G +G+ AKA GA++V+ D+ + +AK G
Sbjct: 14 VGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA 72
Query: 241 TEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299
+ V+ G + + EC G + ++A + G +V V
Sbjct: 73 DLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GTLVLVGL 129
Query: 300 SGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 343
+ + V G F+ + P + K +
Sbjct: 130 GSEMTTVPLLHAAIREV---DIKGVFRYCNTWPVAISMLASKSV 170
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (122), Expect = 1e-08
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 12/179 (6%)
Query: 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIG 224
PQ L V L C T + + PG V V G+G +G + A A GA V
Sbjct: 2 PQEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAF 60
Query: 225 IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC 284
K + AK G E VN ++ D+ + D+ + +
Sbjct: 61 TT-SEAKREAAKALGADEVVNSRNADEMAAHL------KSFDFILNTVAAPHNLDDFTTL 113
Query: 285 CHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEI 343
+ GT +VG A+ + ++ R G+ G + ++D + I
Sbjct: 114 LKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG---GIPETQEMLDFCAEHGI 168
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 12/154 (7%)
Query: 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246
A V+ G+ V V G G +GL AKA GA V + + AKN G +
Sbjct: 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-RLEVAKNCGADVTLVV 77
Query: 247 KDHDKPIQQVLV---DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 303
+ ++ + + +C GN + + GT ++VG+ +
Sbjct: 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGTLMLVGMGSQMVT 136
Query: 304 ISTRPFQLVTGRVWKG-TAFGGFKSRSQVPWLVD 336
+ + F+ + P ++
Sbjct: 137 VPLVNA------CAREIDIKSVFRYCNDYPIALE 164
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 11 KAAVAWEPNKPLVIE---DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP-EGLFPCI 66
+A +E P V++ D+ V P+ +V IK+ + + Y SG + L P
Sbjct: 4 RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
G + AG++E+VG+ + + GD V ++
Sbjct: 64 PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYA 102
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Score = 44.4 bits (104), Expect = 2e-06
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 11 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGH 69
KA V PL + D+ + GEV +++ L D G L P +
Sbjct: 2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 10/177 (5%)
Query: 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227
P L CG T + PG V + GLG +G +K A + I
Sbjct: 2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVISR 59
Query: 228 DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 287
+K + A G ++ + ++ V S + ++M A+ K
Sbjct: 60 SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAM----K 115
Query: 288 GWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIK 344
G V + + + +S +P+ + +A G S ++ L+ +K+IK
Sbjct: 116 VGGRIVSISIPEQHEMLSLKPY-GLKAVSISYSALG---SIKELNQLLKLVSEKDIK 168
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 9 TCKAAVAWEPNKPLV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCI 66
+A V + ++ + + G+V +++ ++++ + D
Sbjct: 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YP 61
Query: 67 LGHEAAGIVESVGEGVTEVQPGDHVIPCYQAEC 99
V + GD VI
Sbjct: 62 FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIG 94
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 40.1 bits (92), Expect = 1e-04
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 7 VITCKAAVAWEPNKP-----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG 61
+IT +A + + +P ++ EV +K L + + +D G P
Sbjct: 1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60
Query: 62 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFC 105
EG+ EV + +A
Sbjct: 61 PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSH 104
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 11/178 (6%)
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
G T ++ ++ PG V + A +R+ K +
Sbjct: 6 FGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM 65
Query: 235 AKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSV 293
GV + + D +++LTDG GVD + ++ R G +
Sbjct: 66 LSRLGVEYVGDSRSVD--FADEILELTDGYGVDVVLNSLAGEAIQRG--VQILAPGGRFI 121
Query: 294 IVGVAASGQEISTRPFQLVTGRVWKGTAFGGF------KSRSQVPWLVDKYMKKEIKV 345
+G + S L + + R + ++ +++V
Sbjct: 122 ELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEV 179
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 2/151 (1%)
Query: 175 LGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234
T + T +++P +A A +++IG +K
Sbjct: 9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS 68
Query: 235 AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVI 294
A G + +N ++ D + + L ++T G +L+C +
Sbjct: 69 ALKAGAWQVINYREED--LVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSF 126
Query: 295 VGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325
+ + ++ + G+
Sbjct: 127 GNSSGAVTGVNLGILNQKGSLYVTRPSLQGY 157
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
+++FGLG VG A A G VIG+D+ K D +
Sbjct: 3 ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDLINQGKSPIVEPGLEA 53
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 6/112 (5%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---VTEFVNPKDHDKPIQ 254
AV GLG G A A G V+ DID ++ ++ G +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 255 QVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEIST 306
+ L D + + A +I + G
Sbjct: 63 TSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLI--ILNPGATGGA 112
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.001
Identities = 26/84 (30%), Positives = 35/84 (41%)
Query: 22 LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81
L + A P E++++ + D Y SG P P LG EAAGIV VG G
Sbjct: 15 LQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSG 74
Query: 82 VTEVQPGDHVIPCYQAECRECKFC 105
V ++ GD V+ A
Sbjct: 75 VKHIKAGDRVVYAQSALGAYSSVH 98
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249
+AV G G VGL++ + + V +DI P K D+ N ++
Sbjct: 3 IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEY 52
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 379 | |||
| d1cdoa1 | 199 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 100.0 | |
| d2fzwa1 | 197 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 100.0 | |
| d1e3ia1 | 202 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 100.0 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 100.0 | |
| d1p0fa1 | 198 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 100.0 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 100.0 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d2jhfa1 | 198 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 100.0 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 100.0 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 100.0 | |
| d1piwa1 | 192 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 100.0 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 100.0 | |
| d1jqba1 | 177 | Bacterial secondary alcohol dehydrogenase {Clostri | 100.0 | |
| d1kola1 | 201 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 100.0 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 100.0 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.98 | |
| d1uufa1 | 179 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.97 | |
| d1yb5a1 | 150 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.97 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 99.96 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.96 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 99.95 | |
| d1qora1 | 147 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.95 | |
| d1xa0a1 | 152 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.95 | |
| d1iz0a1 | 131 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.95 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.95 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.95 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 99.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.94 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.92 | |
| d1o89a1 | 146 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.92 | |
| d1tt7a1 | 162 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.92 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.92 | |
| d1gu7a1 | 175 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.92 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.91 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.91 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.91 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.9 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.9 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.9 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.88 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.87 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.81 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.81 | |
| d1vj1a1 | 166 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.65 | |
| d1v3va1 | 147 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.59 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.49 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.92 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.88 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.84 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.72 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.7 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.67 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.65 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.57 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.46 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.45 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.41 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.39 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.39 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.38 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.36 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.34 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.34 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.3 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.28 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.27 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.26 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.26 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.22 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 97.21 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.2 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 97.18 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.13 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.12 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.12 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.11 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 97.11 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 97.11 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.1 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.09 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.09 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 97.08 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.07 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.02 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.01 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.97 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.97 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 96.96 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.96 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.96 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 96.95 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.93 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 96.93 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.91 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 96.91 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 96.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.9 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.87 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 96.84 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.84 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.84 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 96.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.83 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.83 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.81 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.81 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.8 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.8 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 96.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.79 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.77 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 96.76 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.74 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.72 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 96.69 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.66 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.66 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 96.66 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.62 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 96.56 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.55 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.53 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.5 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.48 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 96.47 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 96.47 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 96.47 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 96.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 96.43 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 96.39 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.36 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 96.32 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.31 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 96.29 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 96.24 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 96.13 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 96.09 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 96.09 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.04 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.01 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 95.99 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.93 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 95.88 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 95.82 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 95.82 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 95.79 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 95.75 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 95.7 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.68 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 95.65 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.54 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 95.48 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.44 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 95.31 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.28 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 95.28 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 95.23 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 95.21 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.15 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.05 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 95.0 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.87 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.81 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.75 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.73 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 94.66 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.6 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.52 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 94.5 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 94.48 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 94.47 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.37 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.31 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.27 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.27 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.23 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 94.23 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.2 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 94.18 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 94.12 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 94.11 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.08 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.02 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.98 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.97 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.91 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 93.89 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.86 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.85 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.85 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.84 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.8 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.66 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 93.6 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.5 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.35 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 93.32 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.28 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.25 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 93.21 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.21 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.21 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 93.11 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.98 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.88 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 92.86 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.83 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.75 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.7 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 92.7 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.55 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.54 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 92.54 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 92.47 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.47 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 92.41 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 92.3 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 92.23 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.21 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 92.16 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.16 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.08 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.06 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 91.99 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 91.96 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.94 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 91.87 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 91.78 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.69 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.66 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.62 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.62 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 91.57 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.55 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.54 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.54 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 91.48 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 91.43 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 91.34 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 91.3 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 91.28 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.25 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 91.24 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 91.21 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 91.21 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 91.19 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.18 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.06 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 91.01 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 90.99 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 90.97 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.91 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.91 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 90.87 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.86 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.83 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.82 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.8 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 90.71 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 90.67 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.65 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.44 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 90.43 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.38 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 90.3 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.3 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.27 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 90.1 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.02 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.0 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.94 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 89.8 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.73 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 89.7 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.63 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 89.62 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 89.54 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.52 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 89.4 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 89.34 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 89.29 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 89.22 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.17 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.15 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 89.14 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 89.13 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.8 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.79 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 88.79 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.78 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 88.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 88.61 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 88.46 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.24 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 88.0 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 87.87 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.81 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.77 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 87.72 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.66 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 87.6 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 87.6 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.49 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 87.3 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 87.3 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 87.25 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 87.12 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.77 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 86.73 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 86.73 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 86.64 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 86.56 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 86.54 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 86.51 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.24 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.23 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.6 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 85.47 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 85.38 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 85.32 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 85.23 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 85.2 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 84.87 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 84.68 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 84.68 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 84.63 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 84.56 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 84.37 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 84.36 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 84.31 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 84.21 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 84.06 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.98 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 83.92 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 83.78 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 83.42 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 83.37 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 83.16 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 83.11 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 83.04 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 82.82 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.81 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 82.69 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 82.38 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 82.33 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 82.22 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 82.04 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 81.93 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.93 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 81.89 | |
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 81.84 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 81.74 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 81.53 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.51 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 81.47 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 81.41 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 80.93 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 80.89 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.85 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 80.83 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 80.48 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 80.43 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.33 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 80.16 |
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=100.00 E-value=2.6e-39 Score=277.16 Aligned_cols=198 Identities=48% Similarity=0.776 Sum_probs=181.8
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
|-.+++++||++++++++|++++|++.|+|+++||+|||.++|||++|++.+.|......+|.++|||++|+|+++|+++
T Consensus 2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v 81 (199)
T d1cdoa1 2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV 81 (199)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence 34667899999999999999999999999999999999999999999999999987777899999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEe
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAK 162 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 162 (379)
+++++||||++.+..+|+.|.+|+.+++++|.+.......+.. ..|...+..+|....+..+.|+|+||+.+|+..+++
T Consensus 82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~ 160 (199)
T d1cdoa1 82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM-SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK 160 (199)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTT-SCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred ceecCCCEEEEeeeccccccccccCCCcccccccccccccccc-cCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence 9999999999999999999999999999999987765444444 666677778888888888889999999999999999
Q ss_pred cCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 163 IDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 163 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
||++++++++|++.+++.|+++++......+.|++|||+
T Consensus 161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~ 199 (199)
T d1cdoa1 161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199 (199)
T ss_dssp CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 999999999999999999999998888889999999984
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=100.00 E-value=3e-38 Score=269.59 Aligned_cols=196 Identities=57% Similarity=0.886 Sum_probs=176.9
Q ss_pred CccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 016978 5 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 5 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
++.++|||++++++++|++++|+|.|+|+++||||||.++|||++|+++++|.+....+|.++|||++|+|+++|++|+.
T Consensus 2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~ 81 (197)
T d2fzwa1 2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK 81 (197)
T ss_dssp CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence 46789999999999999999999999999999999999999999999999998877889999999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
+++||||++.+...|+.|.+|+.+.++.|.+.......|.. .+....+..+|.+..++.+.|+|+||+.+|+.+++++|
T Consensus 82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp 160 (197)
T d2fzwa1 82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLM-PDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID 160 (197)
T ss_dssp CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCC-TTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred cCCCCEEEEccccccccccccccCccccCcccccccccccc-CCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence 99999999999999999999999999999987655444444 55556677788888888889999999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
++++++++|.+++++.+++.++..+...+.+++|||+
T Consensus 161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi 197 (197)
T d2fzwa1 161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197 (197)
T ss_dssp TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence 9999999999999999999987555556778999884
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=100.00 E-value=8.8e-37 Score=262.37 Aligned_cols=196 Identities=46% Similarity=0.821 Sum_probs=170.4
Q ss_pred CCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 3 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
|...+++|||++++++++|++++|+|.|+|+++||||||.++|||++|++.++|.++ ..+|.++|||++|+|+++|+++
T Consensus 2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V 80 (202)
T d1e3ia1 2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGV 80 (202)
T ss_dssp CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCc
Confidence 456679999999999999999999999999999999999999999999999999765 4579999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccc---cceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATG---AGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~---~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
+++++||||++.+...|+.|.+|..++++.|.+...... .+.....+...+..+|...++..+.|+|+||+.+|+..
T Consensus 81 ~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~ 160 (202)
T d1e3ia1 81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEAN 160 (202)
T ss_dssp CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred eeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhh
Confidence 999999999999999999999999999999998775421 11122345556677788888999999999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEc
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 202 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G 202 (379)
+++||++++++.++++.+++.++++++ + .+++|++|.|+.
T Consensus 161 l~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi~ 200 (202)
T d1e3ia1 161 LARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTIL 200 (202)
T ss_dssp EEECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEEE
Confidence 999999999998888888888877765 2 256899998763
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=3.5e-36 Score=255.90 Aligned_cols=190 Identities=28% Similarity=0.521 Sum_probs=157.6
Q ss_pred ccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCC
Q 016978 8 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQP 87 (379)
Q Consensus 8 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 87 (379)
++|+|+++.+.++|++++++|.|+|+++|||||+.+++||++|++++.|.++. ++|.++|||++|+|+++|+++++|++
T Consensus 2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~v 80 (194)
T d1f8fa1 2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQV 80 (194)
T ss_dssp EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEcc
Confidence 47999999999999999999999999999999999999999999999998654 68999999999999999999999999
Q ss_pred CCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCcccccc--CCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 88 GDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSI--NGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 88 Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
||||+. +..+|+.|.+|++++++.|.+.....+.|.. .+|...+.. .+....+..+.|+|+||..+++..++++|+
T Consensus 81 GDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~-~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~ 158 (194)
T d1f8fa1 81 GDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGAD-SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK 158 (194)
T ss_dssp TCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSC-SSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred Cceeee-ecccccCChhhhCCCcccccccccceecccc-ccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence 999955 4558999999999999999986544334433 333222211 133344667779999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEE
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGI 225 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v 225 (379)
+++++++ +++.|+|++|++++|+|+.+|+.+|+++
T Consensus 159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV 193 (194)
T d1f8fa1 159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193 (194)
T ss_dssp TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 9876543 3456889999999999999999777776
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=100.00 E-value=9.1e-37 Score=260.54 Aligned_cols=194 Identities=47% Similarity=0.824 Sum_probs=166.0
Q ss_pred CCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 016978 4 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
..+..+|||++++++++|++++|+|.|+|+++||||||.|+|||++|+++++|..+. .+|.++|||++|+|+++|++++
T Consensus 3 ~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v~ 81 (198)
T d1p0fa1 3 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGVT 81 (198)
T ss_dssp TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTCC
T ss_pred CCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCcccc
Confidence 345689999999999999999999999999999999999999999999999987654 6899999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
++++||||++.+..+|+.|.+|+++.+++|+........|.. .++...+...|.+.+.+.+.|+|+||+.+++..++++
T Consensus 82 ~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~ki 160 (198)
T d1p0fa1 82 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLM-ADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKI 160 (198)
T ss_dssp SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred cCcCCCEEEEEeeccccccccccccccccchhhhcccccccc-CCCceeEeeCCeeccccCCCccceeeEEecHHHEEEC
Confidence 999999999999999999999999999999988765444444 4455566677888888888899999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHH
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLA 209 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~ 209 (379)
|++++++.++...+.+ ..+.++++|||+|+|++|++
T Consensus 161 p~~~~~~~~~~~~~~~----------~~v~~~~~vlv~G~G~iGl~ 196 (198)
T d1p0fa1 161 DPKINVNFLVSTKLTL----------DQINKAFELLSSGQGVRSIM 196 (198)
T ss_dssp CTTSCGGGGEEEEECG----------GGHHHHHHHTTTSSCSEEEE
T ss_pred CCCCCHHHHHHhhcch----------hhcCCCCEEEEECCCcceEE
Confidence 9999877655443322 22345567888899888753
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=100.00 E-value=3.8e-36 Score=253.26 Aligned_cols=170 Identities=24% Similarity=0.421 Sum_probs=151.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC---CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|+| +++++++ ++++|+|.|+|+++|||||+.+++||++|++.+.+.... .+.|.++|||++|+|+++|+++++++
T Consensus 3 maA-Vl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~ 80 (178)
T d1e3ja1 3 LSA-VLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK 80 (178)
T ss_dssp EEE-EEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred eEE-EEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence 444 5678888 999999999999999999999999999999988765422 26789999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+...|+.|.+|+.++.+.|.+.... |....+| +|+||+.+|+++++++|++
T Consensus 81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~---~~~~~~G------------------~~aey~~v~~~~~~~iP~~ 139 (178)
T d1e3ja1 81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC---ATPPDDG------------------NLARYYVHAADFCHKLPDN 139 (178)
T ss_dssp TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET---TBTTBCC------------------SCBSEEEEEGGGEEECCTT
T ss_pred CCCEEEECcccccCCccccccCCccccccccce---ecccccc------------------ccceeeeecccceeeCCCC
Confidence 999999999999999999999999999987753 3222344 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 203 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga 203 (379)
+++++|+.+++.+.|||+++ +++++++|++|||+|+
T Consensus 140 ~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~ 175 (178)
T d1e3ja1 140 CNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS 175 (178)
T ss_dssp CCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred CCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence 99999999999999999985 7889999999999975
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-35 Score=248.84 Aligned_cols=172 Identities=30% Similarity=0.408 Sum_probs=153.2
Q ss_pred ccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 016978 6 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
.|.||||+++.++|+|++++|+|.|.|+++||||||.+++||++|++.++|.++. ..+|.++|||++|+|+++|+++++
T Consensus 2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~ 81 (175)
T d1llua1 2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR 81 (175)
T ss_dssp CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence 5789999999999999999999999999999999999999999999999998764 378999999999999999999999
Q ss_pred cCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 85 VQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 85 ~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
+++||||++.+. ..|+.|.+|+.+.++.|.+... +|.. .+| +|+||+.+++++++++
T Consensus 82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~-~~g------------------g~aey~~v~~~~~~~i 139 (175)
T d1llua1 82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYS-VNG------------------GYAEYVLADPNYVGIL 139 (175)
T ss_dssp CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEECTTTSEEC
T ss_pred cccCCEEEeccccccCCccccccCCcccccccccc---cccc-ccc------------------ccceEEEechHHEEEC
Confidence 999999988764 6799999999999999998774 4443 444 9999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
|++++++.++++.+++.|+++++ +.+ ..+|++|||+
T Consensus 140 Pd~l~~~~a~~~~~~~~t~~~~~-~~g-~~~G~~VLVl 175 (175)
T d1llua1 140 PKNVKATIHPGKLDDINQILDQM-RAG-QIEGRIVLEM 175 (175)
T ss_dssp CTTCCCCEEEECGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred CCCCChhHHHHHHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence 99999998888888888888864 433 4579999984
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=100.00 E-value=9.4e-35 Score=248.69 Aligned_cols=195 Identities=49% Similarity=0.772 Sum_probs=167.2
Q ss_pred CCCCccccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 2 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 2 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
||...+++|||++++++++|++++|++.|+|+++||||||.++|||++|++.++|.++. ++|.++|||++|+|+++|++
T Consensus 1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~ 79 (198)
T d2jhfa1 1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEG 79 (198)
T ss_dssp CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTT
T ss_pred CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCcc
Confidence 45677799999999999999999999999999999999999999999999999997654 58999999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
++++++||||++.+..+|+.|.+|+.++.+.|.+.......|.. .++...+..+|...+++++.|+|+||+++|+..++
T Consensus 80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~ 158 (198)
T d2jhfa1 80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA 158 (198)
T ss_dssp CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSC-TTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccc-cCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence 99999999999999999999999999999999998876555544 55556677888999999999999999999999999
Q ss_pred ecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 162 KIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 162 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
++|+.++++.++...+++.+.... ...+++|++|+|+
T Consensus 159 ~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi 195 (198)
T d2jhfa1 159 KIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI 195 (198)
T ss_dssp ECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence 999999887655443333322221 1236789999886
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=2.7e-35 Score=245.91 Aligned_cols=166 Identities=30% Similarity=0.375 Sum_probs=150.7
Q ss_pred eeeeeecCCCCeEEEEeeCCCC-CCCeEEEEEeeeeccccccccccCCCCC---CCCCcccccceeEEEEEeCCCCCCcC
Q 016978 11 KAAVAWEPNKPLVIEDVQVAPP-QAGEVRIKILFTALCHTDAYTWSGKDPE---GLFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~p~~-~~~~VlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
||+++.++|+|+++++++.|++ +++|||||+.+++||++|++.+.|..+. ..+|.++|||++|+|+++|+++++++
T Consensus 1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~ 80 (171)
T d1h2ba1 1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 80 (171)
T ss_dssp CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence 7999999999999999999986 6899999999999999999999886543 36799999999999999999999999
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||||++.+...|+.|..|..+.+++|.+... +|.. .+| +|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~ 138 (171)
T d1h2ba1 81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLN-IDG------------------GFAEFMRTSHRSVIKLPKD 138 (171)
T ss_dssp TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTT-BCC------------------SSBSEEEECGGGEEECCTT
T ss_pred CCCEEEEcCccCCCCccccccccccccccccc---ceee-ccc------------------ccceeeeehhhcceecCCC
Confidence 99999999999999999999999999998764 4443 445 9999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEE
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI 200 (379)
++++.++++.+++.|+|+++ +.+.+ .|++|||
T Consensus 139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI 170 (171)
T d1h2ba1 139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI 170 (171)
T ss_dssp CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence 99998888888999999986 66777 8999998
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-35 Score=246.09 Aligned_cols=173 Identities=23% Similarity=0.301 Sum_probs=149.9
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC---CCCCCcccccceeEEEEEeCCCCC
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVT 83 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~ 83 (379)
+.++.|++++++++ ++++|+|.|+|+++||||||.+++||++|++.+++... ..++|.++|||++|+|+++|++++
T Consensus 5 ~p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~ 83 (185)
T d1pl8a1 5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83 (185)
T ss_dssp CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred CCCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence 34678999999998 99999999999999999999999999999999876432 236789999999999999999999
Q ss_pred CcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEec
Q 016978 84 EVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKI 163 (379)
Q Consensus 84 ~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 163 (379)
++++||||++.+...|+.|.+|+.+++++|.+... +|....+| +|+||+.++.+++++|
T Consensus 84 ~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G------------------~~aey~~~~~~~~~~l 142 (185)
T d1pl8a1 84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG------------------NLCRFYKHNAAFCYKL 142 (185)
T ss_dssp SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC------------------SCBSEEEEEGGGEEEC
T ss_pred eecccccceecceeccccchhhccchhchhcccee---eecccccc------------------cceEEEEEchHHEEEC
Confidence 99999999999999999999999999999998775 33332344 9999999999999999
Q ss_pred CCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCCh
Q 016978 164 DPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGT 205 (379)
Q Consensus 164 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~ 205 (379)
|+++++++|++++ +.+|+++ ++..++++|++||| |+|+
T Consensus 143 P~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP 180 (185)
T d1pl8a1 143 PDNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP 180 (185)
T ss_dssp CTTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred CCCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence 9999999987654 4567776 46678899999998 5543
|
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-34 Score=243.05 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=153.8
Q ss_pred CCccccceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 4 EGQVITCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 4 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
|+.|.+|||+++..++.. +++.+++.++++++|||||+.|+|||++|++++.|.++..++|+++|||++|+|+++|++
T Consensus 1 m~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~ 80 (192)
T d1piwa1 1 MSYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPK 80 (192)
T ss_dssp CCTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTT
T ss_pred CCCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhcccc
Confidence 457889999999998775 778888877789999999999999999999999998888889999999999999999999
Q ss_pred C-CCcCCCCEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc
Q 016978 82 V-TEVQPGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS 159 (379)
Q Consensus 82 v-~~~~~Gd~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 159 (379)
+ +.+++||||.+.+. ..|+.|.+|+.++++.|.+....... ...+| ....|+|+||+.+|+..
T Consensus 81 v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~--~~~~G-------------~~~~Ggfaey~~v~~~~ 145 (192)
T d1piwa1 81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ--PYEDG-------------YVSQGGYANYVRVHEHF 145 (192)
T ss_dssp CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSC--BCTTS-------------CBCCCSSBSEEEEEGGG
T ss_pred cccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccccc--ccccc-------------cccccceeeEEEeehHH
Confidence 8 56999999987764 67999999999999999987643110 00111 22345999999999999
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
++++|+++++++|+.+.+.+.|||+++ +++++++|++|||.
T Consensus 146 ~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~ 186 (192)
T d1piwa1 146 VVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY 186 (192)
T ss_dssp EEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred eEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence 999999999988776655577999976 67899999999974
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-34 Score=240.41 Aligned_cols=174 Identities=24% Similarity=0.372 Sum_probs=146.0
Q ss_pred cccceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCC---
Q 016978 7 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT--- 83 (379)
Q Consensus 7 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~--- 83 (379)
+++|||++++++++|+++++++.|+|+++||||||.++|||++|+++++|.++..++|+++|||++|+|+++|++++
T Consensus 2 ~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~ 81 (184)
T d1vj0a1 2 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLN 81 (184)
T ss_dssp CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTT
T ss_pred CceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccccc
Confidence 46899999999999999999999999999999999999999999999999888778999999999999999999986
Q ss_pred --CcCCCCEEeecCCcCCCCCccccCCCC-CCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEec-Ccc
Q 016978 84 --EVQPGDHVIPCYQAECRECKFCKSGKT-NLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVH-DVS 159 (379)
Q Consensus 84 --~~~~Gd~V~~~~~~~~~~~~~c~~~~~-~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~-~~~ 159 (379)
.+++||+|++.+..+|+.|.+|+.+.+ +.|.+... +|.. + + +.....-.|+|+||+.++ +.+
T Consensus 82 ~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~-~-~---------~~~~~~~~Gg~ae~~~v~~~~~ 147 (184)
T d1vj0a1 82 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGIN-R-G---------CSEYPHLRGCYSSHIVLDPETD 147 (184)
T ss_dssp SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTT-C-C---------SSSTTCCCSSSBSEEEECTTCC
T ss_pred cccccceeeeEeccccccccChhHhCccccccCCCcee---eccC-C-C---------CCCCCCcceeCcCcEEechhHc
Confidence 468999999999999999999999985 56887664 3321 0 0 000011235999999995 579
Q ss_pred eEecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 160 VAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 160 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
++++|+++++++ ++.+|++++ +++++++|++|||+
T Consensus 148 v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~ 182 (184)
T d1vj0a1 148 VLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY 182 (184)
T ss_dssp EEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred EEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence 999999998653 345677774 77889999999997
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=100.00 E-value=6e-36 Score=250.33 Aligned_cols=171 Identities=21% Similarity=0.198 Sum_probs=143.9
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||+++.++++ ++++|+|.|+|+++||+||+.+++||++|++.+.+.....++|+++|||++|+|+++|++++++++||
T Consensus 1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd 79 (177)
T d1jqba1 1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD 79 (177)
T ss_dssp CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence 89999999999 99999999999999999999999999999988877666667899999999999999999999999999
Q ss_pred EEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC--cceEecCCCC
Q 016978 90 HVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSVAKIDPQA 167 (379)
Q Consensus 90 ~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~--~~~~~iP~~~ 167 (379)
||++.+..+|+.|.+|+.+.++.|.+......+|.. .+| +|+||+++|. ..++++|+++
T Consensus 80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~-~~G------------------~~aEy~~vp~a~~~l~~iP~~~ 140 (177)
T d1jqba1 80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNF-KDG------------------VFGEYFHVNDADMNLAILPKDV 140 (177)
T ss_dssp EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTT-BCC------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred cEEEeeeeccccccchhhhhhcccccccccccccCC-CCh------------------hcCeeEEEEhhhCeEEECCCCc
Confidence 999999999999999999999999987654333322 344 9999999986 4689999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHH
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVA 211 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~ 211 (379)
++++++...+ +++..+ ++.|||+|+|++|+.++
T Consensus 141 ~~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~aa 173 (177)
T d1jqba1 141 DLSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIKA 173 (177)
T ss_dssp CGGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred chHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhee
Confidence 9887664332 222222 35577888888876543
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.7e-35 Score=252.70 Aligned_cols=191 Identities=21% Similarity=0.261 Sum_probs=157.1
Q ss_pred ceeeeeecCCCCeEEEEeeCCCC-------CCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPP-------QAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV 82 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~-------~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 82 (379)
+||++++++++ ++++|+|.|++ .++||+|||.+++||++|+++++|..+ .++|.++|||++|+|+++|++|
T Consensus 2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V 79 (201)
T d1kola1 2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDV 79 (201)
T ss_dssp EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccccc
Confidence 59999999998 99999999865 469999999999999999999998875 4689999999999999999999
Q ss_pred CCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecC--cce
Q 016978 83 TEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHD--VSV 160 (379)
Q Consensus 83 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~--~~~ 160 (379)
++|++||||++.+..+|+.|.+|++++++.|.........|...... .....|+|+||+.+|. ..+
T Consensus 80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~------------~~~~~Gg~aeyv~vp~~~~~l 147 (201)
T d1kola1 80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVD------------MGDWTGGQAEYVLVPYADFNL 147 (201)
T ss_dssp CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTT------------SCCBCCCSBSEEEESSHHHHC
T ss_pred ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccC------------CCccccccccEEEeehHHCeE
Confidence 99999999999999999999999999999998775443333211100 0011359999999985 369
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA 219 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~ 219 (379)
++|||+.++.+++++...+.++++++ +..+.+.++ +|+|++|++++|+||.+|+
T Consensus 148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA 201 (201)
T d1kola1 148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA 201 (201)
T ss_dssp EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence 99999877777777777788888874 445554443 5899999999999999886
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.8e-33 Score=232.67 Aligned_cols=167 Identities=26% Similarity=0.414 Sum_probs=141.7
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCC--------CCCCCcccccceeEEEEEeCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDP--------EGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
|||++++++|+|++++|+|.|+|+++||+||+.+++||++|+++++|.++ ..++|+++|||++|+|+++|+.
T Consensus 1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~ 80 (177)
T d1jvba1 1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE 80 (177)
T ss_dssp CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence 89999999999999999999999999999999999999999999998643 2368999999999999999999
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcc-e
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVS-V 160 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-~ 160 (379)
++++++||||++.+...|+.|.+|+.++++.|.+... +|.. .+| +|+||+.++... +
T Consensus 81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~-~~G------------------~~aey~~vp~~~~~ 138 (177)
T d1jvba1 81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGIN-FDG------------------AYAEYVIVPHYKYM 138 (177)
T ss_dssp CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTT-BCC------------------SSBSEEEESCGGGE
T ss_pred ccccccCceEeeeeccccccccccccccccccCCcce---eeec-ccc------------------ccccEEEEEhHHeE
Confidence 9999999999999999999999999999999998764 4443 445 999999997655 5
Q ss_pred EecCCCCCccccccccccchhhhhhhhhccCCCCCCEEEE
Q 016978 161 AKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAV 200 (379)
Q Consensus 161 ~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI 200 (379)
+++|+..+.+.|+.+..++.++++++ +..++ .|++|||
T Consensus 139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI 176 (177)
T d1jvba1 139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI 176 (177)
T ss_dssp EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence 56665544444444455778888875 55565 5999997
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.98 E-value=8.7e-33 Score=231.22 Aligned_cols=168 Identities=30% Similarity=0.472 Sum_probs=144.0
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCC-CCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKD-PEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||++++++++|++++|+|.|+|+++||||||.+++||++|++.+++.. ....+|.++|||++|+|+++|+.++++++|
T Consensus 1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG 80 (171)
T d1rjwa1 1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG 80 (171)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence 8999999999999999999999999999999999999999999887654 344789999999999999999999999999
Q ss_pred CEEeecCC-cCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCC
Q 016978 89 DHVIPCYQ-AECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQA 167 (379)
Q Consensus 89 d~V~~~~~-~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~ 167 (379)
|||++.+. ..|+.|..|..+..+.|.+... +|.. .+| +|+||+.+|+++++++|+++
T Consensus 81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~-~~G------------------~~aey~~v~~~~~~~iP~~~ 138 (171)
T d1rjwa1 81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYS-VDG------------------GYAEYCRAAADYVVKIPDNT 138 (171)
T ss_dssp CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTT-BCC------------------SSBSEEEEEGGGCEECCTTC
T ss_pred eEEeeccccccccccccccCCCccccccccc---ccee-ccC------------------ccccceEecHHHEEECCCCC
Confidence 99988764 6788999999999999998764 3433 444 99999999999999999999
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL 203 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga 203 (379)
+++.|+ +. .+.++++++. ++.+ +|++|||+|.
T Consensus 139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~ 170 (171)
T d1rjwa1 139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED 170 (171)
T ss_dssp CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence 987665 44 4566777653 4555 5999999884
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.6e-31 Score=223.86 Aligned_cols=160 Identities=26% Similarity=0.420 Sum_probs=132.5
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGD 89 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 89 (379)
|||++...+++||++.|+|.|+|+++||||||.++|||++|++++.|..+...+|+++|||++|+|+++|++|+++++||
T Consensus 1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd 80 (179)
T d1uufa1 1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD 80 (179)
T ss_dssp CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999888788999999999999999999999999999
Q ss_pred EEeecC-CcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 90 HVIPCY-QAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 90 ~V~~~~-~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
||.+.+ ...|+.|.+|+++++++|.+.... +.+.....+ ....|+|+||+.+|++++++||++..
T Consensus 81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~-------------~~~~GgfaEy~~v~~~~~~~ip~~~~ 146 (179)
T d1uufa1 81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDEP-------------GHTLGGYSQQIVVHERYVLRIRVADI 146 (179)
T ss_dssp EEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSSTT-------------SBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred EEEEcccccccCccccccCcccccCCCcccc-ccccCCCCC-------------cccccccceEEEechHHEEECCCCCc
Confidence 998876 468999999999999999986532 111110000 11235999999999999999996653
Q ss_pred ccccccccccchhhhhhh
Q 016978 169 LDKVCLLGCGVPTGLGAV 186 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l 186 (379)
....+ ..+.++++++
T Consensus 147 ~~~~a---~~l~~a~~a~ 161 (179)
T d1uufa1 147 EMIRA---DQINEAYERM 161 (179)
T ss_dssp EEECG---GGHHHHHHHH
T ss_pred ChhHh---chhHHHHHHH
Confidence 32222 2456677765
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-30 Score=212.87 Aligned_cols=145 Identities=20% Similarity=0.303 Sum_probs=132.0
Q ss_pred cceeeeeecCCCC--eEEE-EeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCC
Q 016978 9 TCKAAVAWEPNKP--LVIE-DVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTE 84 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~ 84 (379)
.|||++++++|+| ++++ ++|.|+|+++||||||.+++||++|++.+.|..+.. .+|.++|||++|+|+++|+++++
T Consensus 2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (150)
T d1yb5a1 2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 81 (150)
T ss_dssp EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence 5999999999887 7775 689999999999999999999999999999877654 77899999999999999999999
Q ss_pred cCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecC
Q 016978 85 VQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKID 164 (379)
Q Consensus 85 ~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP 164 (379)
|++||||++.+. .+| +|+||+.++++.++++|
T Consensus 82 ~~vGdrV~~~~~------------------------------~~G------------------~~ae~~~v~~~~~~~iP 113 (150)
T d1yb5a1 82 FKKGDRVFTSST------------------------------ISG------------------GYAEYALAADHTVYKLP 113 (150)
T ss_dssp CCTTCEEEESCC------------------------------SSC------------------SSBSEEEEEGGGEEECC
T ss_pred cccCcccccccc------------------------------ccc------------------ccccccccccccccccc
Confidence 999999975432 233 99999999999999999
Q ss_pred CCCCccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 165 PQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 165 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
+++++++||+++++..|+|++++..+..++|++|||+
T Consensus 114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL 150 (150)
T d1yb5a1 114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 150 (150)
T ss_dssp TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence 9999999999999999999999999999999999984
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.96 E-value=2.3e-29 Score=210.69 Aligned_cols=173 Identities=30% Similarity=0.517 Sum_probs=156.9
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
++++.|+.++|++.|||+++++.++++||++|||+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++
T Consensus 1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~ 80 (174)
T d1f8fa2 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS 80 (174)
T ss_dssp SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence 35678999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
++ .++.+.+++.+++++|+||||+|++.+++.++++++++ |+++.+|........++++..++. ++++.|+.+++.
T Consensus 81 ~~--~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~ 157 (174)
T d1f8fa2 81 KT--QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSG 157 (174)
T ss_dssp TT--SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGS
T ss_pred CC--cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCC
Confidence 87 78999999999889999999999999999999999996 999999986655666777776655 999999988877
Q ss_pred cccccHHHHHHHHHcCC
Q 016978 326 KSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (379)
..+++++++++++++|+
T Consensus 158 ~~~~~~~~~~~l~~~Gk 174 (174)
T d1f8fa2 158 SPKKFIPELVRLYQQGK 174 (174)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 66778999999999885
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.96 E-value=1.9e-28 Score=204.68 Aligned_cols=173 Identities=50% Similarity=0.861 Sum_probs=150.5
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
|.+||++.|++.|+|+++++.+++++||+|||+|+|++|++++|+|+++|+.+|++++++++|+++++++|+++++|+++
T Consensus 2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~ 81 (174)
T d1p0fa2 2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD 81 (174)
T ss_dssp CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence 56799999999999999989999999999999999999999999999999989999999999999999999999999876
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCccc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSR 328 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 328 (379)
.+....+..+..+++++|++||++|++.++..++..++++.|+++.+|....+..+++++..++.++++.|+.++++. .
T Consensus 82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~-~ 160 (174)
T d1p0fa2 82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFK-G 160 (174)
T ss_dssp CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCC-G
T ss_pred chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCC-H
Confidence 333455555556666999999999999999999998877448999999876667777777666678899999887653 4
Q ss_pred ccHHHHHHHHHcCC
Q 016978 329 SQVPWLVDKYMKKE 342 (379)
Q Consensus 329 ~~~~~~~~~~~~~~ 342 (379)
++++++++++.+||
T Consensus 161 ~d~~~lidl~~~gK 174 (174)
T d1p0fa2 161 EEVSRLVDDYMKKK 174 (174)
T ss_dssp GGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 58999999998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=99.95 E-value=1.8e-28 Score=204.60 Aligned_cols=173 Identities=49% Similarity=0.920 Sum_probs=149.0
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||.+.|++.|+|+++.+.+++++||+|||+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++.
T Consensus 2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~ 81 (174)
T d1e3ia2 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR 81 (174)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence 46789999999999999998999999999999999999999999999999998999999999999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCcc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKS 327 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 327 (379)
..+.......+...++|+|++|||+|++.++++++++++++.|+++.+|.... ...+++..++.++++.|+.++++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~--~~~i~~~~~~~~k~i~Gs~~Gs~~~ 159 (174)
T d1e3ia2 82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD--EMTIPTVDVILGRSINGTFFGGWKS 159 (174)
T ss_dssp GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS--EEEEEHHHHHTTCEEEECSGGGCCH
T ss_pred cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCC--ccccchHHHhccCEEEEEEeeCCCh
Confidence 53334444454555559999999999999999999999993399999998643 4556666666688999999888777
Q ss_pred cccHHHHHHHHHcCC
Q 016978 328 RSQVPWLVDKYMKKE 342 (379)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (379)
.++++++++++.+||
T Consensus 160 ~~d~p~li~l~~~GK 174 (174)
T d1e3ia2 160 VDSVPNLVSDYKNKK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 788999999998875
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.6e-28 Score=198.21 Aligned_cols=141 Identities=22% Similarity=0.290 Sum_probs=123.3
Q ss_pred eeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 11 KAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 11 ~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
+.+.|+++|.| +++++++.|+|+++||+|||.|++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG 81 (147)
T d1qora1 2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG 81 (147)
T ss_dssp EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence 46889999998 9999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|||+.... . .|+|+||+.++.+.++++|++++
T Consensus 82 drV~~~~~------------------------------~------------------~G~~ae~~~v~~~~~~~~P~~~~ 113 (147)
T d1qora1 82 DRVVYAQS------------------------------A------------------LGAYSSVHNIIADKAAILPAAIK 113 (147)
T ss_dssp CEEEESCC------------------------------S------------------SCCSBSEEEEEGGGEEECCTTSC
T ss_pred ceeeeecc------------------------------c------------------cccceeEEEEehHHeEEcCcccc
Confidence 99963211 1 24999999999999999999998
Q ss_pred ccccc--cccccchhhhhhhhhccCCCCCCEEEE
Q 016978 169 LDKVC--LLGCGVPTGLGAVWNTAKVEPGSIVAV 200 (379)
Q Consensus 169 ~~~aa--~l~~~~~ta~~~l~~~~~~~~g~~VlI 200 (379)
++.++ ++++...++++++++ .++++|++|||
T Consensus 114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI 146 (147)
T d1qora1 114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI 146 (147)
T ss_dssp CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence 87654 455666677777655 57999999998
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=3.1e-28 Score=198.83 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=125.1
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCc
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
+|||+++.+++++ +++++++.|+|++|||||||.++|||++|++.+.|.++.. +.|.++|+|++|+|++ ..++.+
T Consensus 3 ~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~ 80 (152)
T d1xa0a1 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRF 80 (152)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSC
T ss_pred ceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCcc
Confidence 6999999999987 5688999999999999999999999999999998887654 7899999999999999 556789
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|+..... .+.. ++ |+|+||+.+|++.++++|+
T Consensus 81 ~~g~~v~~~~~~------------------------~~~~-~~------------------G~~aEy~~v~~~~~~~iP~ 117 (152)
T d1xa0a1 81 REGDEVIATGYE------------------------IGVT-HF------------------GGYSEYARLHGEWLVPLPK 117 (152)
T ss_dssp CTTCEEEEESTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECCT
T ss_pred ccCCEEEEecCc------------------------cccc-cC------------------CCcceeeeehhhccccCCC
Confidence 999999744210 1111 33 4999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEc
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFG 202 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G 202 (379)
+++. +||+++++.+|++.++....+++ |++|||+|
T Consensus 118 ~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~ 152 (152)
T d1xa0a1 118 GLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA 152 (152)
T ss_dssp THHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence 9984 68888889899988888888875 99999975
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=4.1e-28 Score=192.07 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=117.9
Q ss_pred ceeeeeecCCCCeEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcCCC
Q 016978 10 CKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQPG 88 (379)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~~G 88 (379)
|||+++.++|+++++.|++.|+|+++||+||+.+++||++|++.+.|.++.. .+|+++|||++|+| +|
T Consensus 1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG 69 (131)
T d1iz0a1 1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG 69 (131)
T ss_dssp CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence 8999999999999999999999999999999999999999999999987665 78999999999999 39
Q ss_pred CEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCCCC
Q 016978 89 DHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAP 168 (379)
Q Consensus 89 d~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~ 168 (379)
|+|+... .+ |+|+||+.++++.++++|++++
T Consensus 70 d~V~~~~-------------------------------~~------------------G~~aey~~v~~~~~~~~P~~~~ 100 (131)
T d1iz0a1 70 RRYAALV-------------------------------PQ------------------GGLAERVAVPKGALLPLPEGRP 100 (131)
T ss_dssp EEEEEEC-------------------------------SS------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred ceEEEEe-------------------------------cc------------------CccceeeeeCHHHeEEccCCCC
Confidence 9997542 22 4999999999999999999999
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEE
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF 201 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 201 (379)
+++||++++++.|||++|+++++ .|++||++
T Consensus 101 ~~~aa~~~~~~~Ta~~al~~~g~--~g~tvl~l 131 (131)
T d1iz0a1 101 VVGPVFPFAEAEAAFRALLDRGH--TGKVVVRL 131 (131)
T ss_dssp CEEEEEEGGGHHHHHHHTTCTTC--CBEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--CCCEEEEC
Confidence 99999999999999999988764 59999873
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.95 E-value=2.2e-27 Score=199.13 Aligned_cols=174 Identities=69% Similarity=1.139 Sum_probs=148.0
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||+++|++.|+|+++.+.++++|||+|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++.
T Consensus 2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~ 81 (176)
T d2fzwa2 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence 46789999999999999998999999999999999999999999999999988999999999999999999999999986
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC-cccccCcceeeeccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG-QEISTRPFQLVTGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (379)
+...+..+.+++.+++++|+|||++|+..++..+..+++++ ++++.++..... ......+..+++++++.|+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2fzwa2 82 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred chhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence 54455666677776669999999999999899999999996 888877544332 2333334445568899999988877
Q ss_pred ccccHHHHHHHHHcCC
Q 016978 327 SRSQVPWLVDKYMKKE 342 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (379)
.+++++++++++++||
T Consensus 161 ~~~d~~~li~l~~~GK 176 (176)
T d2fzwa2 161 SVESVPKLVSEYMSKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7788999999999886
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.95 E-value=1.2e-27 Score=199.79 Aligned_cols=170 Identities=29% Similarity=0.425 Sum_probs=146.2
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+|+++|+.++++++|+|+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++
T Consensus 1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~ 79 (174)
T d1jqba2 1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY 79 (174)
T ss_dssp SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence 47889999999999999985 77899999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce---eeeccEEEeeec
Q 016978 247 KDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ---LVTGRVWKGTAF 322 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~---~~~~~~i~~~~~ 322 (379)
++ .++.+.+++.+++ |+|+||||+|++.++++++++++++ |+++.+|.+.....++++... .+.++++.++..
T Consensus 80 ~~--~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 156 (174)
T d1jqba2 80 KN--GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 156 (174)
T ss_dssp GG--SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCC
T ss_pred cc--hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecC
Confidence 87 7889999999998 9999999999988899999999996 999999987655555443332 234778887765
Q ss_pred CCCcccccHHHHHHHHHcCC
Q 016978 323 GGFKSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ 342 (379)
+.. +..++++++++.+||
T Consensus 157 ~~~--r~~~e~l~~li~~gk 174 (174)
T d1jqba2 157 PGG--RLRAERLRDMVVYNR 174 (174)
T ss_dssp CCH--HHHHHHHHHHHHTTS
T ss_pred CCC--cccHHHHHHHHHcCC
Confidence 543 245677888888775
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.94 E-value=3.5e-27 Score=197.27 Aligned_cols=172 Identities=49% Similarity=0.886 Sum_probs=149.9
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||.++|++.|+|+++++.+++++|++|+|+|+|++|++++|+++++|+.+||+++.+++|+++++++|+++++|++
T Consensus 3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~ 82 (176)
T d1d1ta2 3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK 82 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence 47889999999999999998999999999999999999999999999999988999999999999999999999999987
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (379)
+. ....+.+.+.+.+ |+|++||++|++..+..++..+.+++|+++.+|.........+++..+++++++.|+.+++..
T Consensus 83 ~~-~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 161 (176)
T d1d1ta2 83 DS-TKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLK 161 (176)
T ss_dssp GC-SSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred cc-chHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeCCC
Confidence 62 2334555565656 999999999998888888888876459999999877767777777777778999999988877
Q ss_pred ccccHHHHHHHHHc
Q 016978 327 SRSQVPWLVDKYMK 340 (379)
Q Consensus 327 ~~~~~~~~~~~~~~ 340 (379)
.++|++++++++.+
T Consensus 162 ~~~dip~li~~~~~ 175 (176)
T d1d1ta2 162 SRDDVPKLVTEFLA 175 (176)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhC
Confidence 77899999988754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.2e-27 Score=197.67 Aligned_cols=166 Identities=20% Similarity=0.258 Sum_probs=144.4
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+|+++||+++++++|||++|++.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++++++
T Consensus 1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~ 79 (174)
T d1yb5a2 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN 79 (174)
T ss_dssp SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence 5789999999999999999989999999999999997 9999999999999999 8999989999999999999999999
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
+++ .++.+.+++.+++ ++|++||++|+ ..++.++++++++ |+++.+|... ..++++..++. ++++.++.++
T Consensus 80 ~~~--~~~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~---~~~~~~~~~~~k~~~i~g~~~~ 152 (174)
T d1yb5a2 80 HRE--VNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRG---TIEINPRDTMAKESSIIGVTLF 152 (174)
T ss_dssp TTS--TTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCS---CEEECTHHHHTTTCEEEECCGG
T ss_pred ccc--ccHHHHhhhhhccCCceEEeecccH-HHHHHHHhccCCC-CEEEEEecCC---CCCCCHHHHHHCCCEEEEEEec
Confidence 987 8899999999988 99999999997 6799999999996 9999998743 34555555544 8999988765
Q ss_pred CCcccccHHHHHHHHHcC
Q 016978 324 GFKSRSQVPWLVDKYMKK 341 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ 341 (379)
.. +++++++++++++++
T Consensus 153 ~~-~~~~~~~~~~~l~~g 169 (174)
T d1yb5a2 153 SS-TKEEFQQYAAALQAG 169 (174)
T ss_dssp GC-CHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHH
Confidence 43 346777877777653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.94 E-value=1.4e-26 Score=194.07 Aligned_cols=174 Identities=52% Similarity=0.950 Sum_probs=145.1
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||+++|++.|+|+++++.++++|||+|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++.
T Consensus 2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~ 81 (176)
T d2jhfa2 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence 46789999999999999999999999999999999999999999999999988999999999999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEc-cCCCCcccccCcceeeeccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG-VAASGQEISTRPFQLVTGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (379)
+.+....+.++...++|+|++||++|.+.+++.++..++++ +..+.++ ...........+..+++++++.|+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2jhfa2 82 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK 160 (176)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred CchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence 53344555555555559999999999999999999999996 5555454 433333334444555569999999988877
Q ss_pred ccccHHHHHHHHHcCC
Q 016978 327 SRSQVPWLVDKYMKKE 342 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (379)
.+++++++++++.+||
T Consensus 161 ~~~~~~~li~~~~~GK 176 (176)
T d2jhfa2 161 SKDSVPKLVADFMAKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCcC
Confidence 7789999999998875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=6.2e-27 Score=197.65 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=144.1
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
+|||+++++++|||+++++.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.+++++.+.++++|+++++++++
T Consensus 1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~ 79 (183)
T d1pqwa_ 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS 79 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence 4799999999999999999999999999999987 9999999999999999 8888889999999999999999999887
Q ss_pred CCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC--
Q 016978 249 HDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF-- 325 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 325 (379)
.++.+.+++.+++ |+|++|||.|+ +.++.++++++++ |+++.+|..............+.++.++.+..+...
T Consensus 80 --~~~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
T d1pqwa_ 80 --VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLK 155 (183)
T ss_dssp --STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHH
T ss_pred --cCHHHHHHHHhCCCCEEEEEecccc-hHHHHHHHHhcCC-CEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceec
Confidence 8999999999988 99999999998 6799999999996 999999865432222222223334666666543221
Q ss_pred ----cccccHHHHHHHHHcCCCCCCCc
Q 016978 326 ----KSRSQVPWLVDKYMKKEIKVDEY 348 (379)
Q Consensus 326 ----~~~~~~~~~~~~~~~~~i~~~~~ 348 (379)
..++.++++++++++|++++.|+
T Consensus 156 ~~~~~~~~~~~~v~~~i~~G~i~p~Pi 182 (183)
T d1pqwa_ 156 LQPARYRQLLQHILQHVADGKLEVLPV 182 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred cCHHHHHHHHHHHHHHHHCCCCceeCC
Confidence 12345788899999999997653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.8e-26 Score=194.42 Aligned_cols=169 Identities=22% Similarity=0.355 Sum_probs=144.5
Q ss_pred ccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD 248 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~ 248 (379)
++.+|.+.|++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++++.+
T Consensus 3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~ 82 (182)
T d1vj0a2 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE 82 (182)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence 45678889999999999988889999999999999999999999999999988999999999999999999999999876
Q ss_pred CC-chHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcce--eeeccEEEeeecCC
Q 016978 249 HD-KPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ--LVTGRVWKGTAFGG 324 (379)
Q Consensus 249 ~~-~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~--~~~~~~i~~~~~~~ 324 (379)
.+ .++.+.+++.+++ |+|+||||+|++..++.++++++++ |+++.+|......++++.++. +.+++++.|++.++
T Consensus 83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~ 161 (182)
T d1vj0a2 83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD 161 (182)
T ss_dssp SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence 32 2355667888888 9999999999988899999999996 999999987666666766554 23488999987653
Q ss_pred CcccccHHHHHHHHHcC
Q 016978 325 FKSRSQVPWLVDKYMKK 341 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (379)
..++++++++++++
T Consensus 162 ---~~~~~~~~~~i~~~ 175 (182)
T d1vj0a2 162 ---TSHFVKTVSITSRN 175 (182)
T ss_dssp ---HHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHHHC
Confidence 35788888888765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=2.3e-26 Score=191.72 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=147.4
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++.+||.++|++.|||+++ ++.++++|++|||+|+ |++|++++|+++.+|+.+|++++++++|+++++++|++++++
T Consensus 1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~ 79 (170)
T d1jvba2 1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN 79 (170)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence 57889999999999999986 6789999999999996 999999999999999879999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
+++ .++.+.+++.+.+ ++|++|||+|++..++.++++++++ |+++.+|....+ .+++...++. ++++.|++.+
T Consensus 80 ~~~--~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~k~i~i~Gs~~~ 154 (170)
T d1jvba2 80 ASM--QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGAD--LHYHAPLITLSEIQFVGSLVG 154 (170)
T ss_dssp TTT--SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCC--CCCCHHHHHHHTCEEEECCSC
T ss_pred cCC--cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEeccccCc--cccCHHHHHhCCcEEEEEecC
Confidence 877 7888889998888 8999999999999999999999996 999999986544 4454444444 9999998766
Q ss_pred CCcccccHHHHHHHHHcCC
Q 016978 324 GFKSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ 342 (379)
+ +++++++++++++||
T Consensus 155 ~---~~d~~~~l~lv~~GK 170 (170)
T d1jvba2 155 N---QSDFLGIMRLAEAGK 170 (170)
T ss_dssp C---HHHHHHHHHHHHTTS
T ss_pred C---HHHHHHHHHHHHcCC
Confidence 3 478999999999886
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.93 E-value=1.2e-25 Score=188.19 Aligned_cols=173 Identities=57% Similarity=1.058 Sum_probs=141.9
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
++++||+++|++.|+|+++++.+++++||+|||+|+|++|++++++++..|+.+|++++++++|++.++++|+++++|+.
T Consensus 2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~ 81 (175)
T d1cdoa2 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN 81 (175)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence 46789999999999999998999999999999999999999999999999998999999999999999999999999987
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCCc
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFK 326 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 326 (379)
+. .+..+.+++.+.+ |+|++||++|+..++..++.+++++.+.++..|.. ........+..+.+++++.|++++++.
T Consensus 82 ~~-~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~-~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 159 (175)
T d1cdoa2 82 DH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT-DLHDVATRPIQLIAGRTWKGSMFGGFK 159 (175)
T ss_dssp GC-SSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC-SSSCEEECHHHHHTTCEEEECSGGGCC
T ss_pred Cc-chhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEec-CCcccCccHHHHHCCcEEEEEEEeCCc
Confidence 52 2344555555544 99999999999888999999888862444444443 333333333334558899999988877
Q ss_pred ccccHHHHHHHHHcCC
Q 016978 327 SRSQVPWLVDKYMKKE 342 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (379)
.+++++++++++++||
T Consensus 160 ~~~d~~~~i~l~~~gK 175 (175)
T d1cdoa2 160 GKDGVPKMVKAYLDKK 175 (175)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7789999999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.8e-25 Score=184.34 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=138.6
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+|+++||++. ++++||+++ +++++++|++|||+|+|++|++++|+|+.+|+++|++++.+++|+++++++|+++++++
T Consensus 1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~ 78 (171)
T d1pl8a2 1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI 78 (171)
T ss_dssp SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence 5788988774 788999985 77899999999999999999999999999999889999999999999999999999988
Q ss_pred CCCCch-HHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCC
Q 016978 247 KDHDKP-IQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGG 324 (379)
Q Consensus 247 ~~~~~~-~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 324 (379)
++.+.. ..+.+....+.++|+||||+|++..++.++++++++ |+++.+|.+.. ..++++..++. ++++.|++.
T Consensus 79 ~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~~--~~~~~~~~~~~k~l~i~Gs~~-- 153 (171)
T d1pl8a2 79 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE--MTTVPLLHAAIREVDIKGVFR-- 153 (171)
T ss_dssp SSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCCS--CCCCCHHHHHHTTCEEEECCS--
T ss_pred cccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCCC--CCccCHHHHHHCCcEEEEEeC--
Confidence 763222 222232333338999999999999999999999996 99999998654 34555555544 889988753
Q ss_pred CcccccHHHHHHHHHcCCCC
Q 016978 325 FKSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~ 344 (379)
+..+++++++++++|+++
T Consensus 154 --~~~~~~~al~li~~gkid 171 (171)
T d1pl8a2 154 --YCNTWPVAISMLASKSVN 171 (171)
T ss_dssp --CSSCHHHHHHHHHTTSCC
T ss_pred --CHhHHHHHHHHHHcCCCC
Confidence 236899999999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.92 E-value=2.2e-25 Score=185.99 Aligned_cols=164 Identities=22% Similarity=0.353 Sum_probs=141.0
Q ss_pred ccccccccccchhhhhhhhhcc-CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 169 LDKVCLLGCGVPTGLGAVWNTA-KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 169 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+.++|+++|++.|||+++.+.. .++||++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++++++++
T Consensus 6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~ 85 (172)
T d1h2ba2 6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 85 (172)
T ss_dssp HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence 5688999999999999987655 479999999999999999999999999988999999999999999999999999987
Q ss_pred CCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
+ +..+.+.+.+.+ ++|+||||+|+...++.++++++++ |+++.+|... +.++++..++. ++++.|++.++
T Consensus 86 ~---~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~---~~~~~~~~l~~k~~~i~Gs~~~~- 157 (172)
T d1h2ba2 86 R---DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG---ELRFPTIRVISSEVSFEGSLVGN- 157 (172)
T ss_dssp S---CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS---CCCCCHHHHHHTTCEEEECCSCC-
T ss_pred c---cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc---cccCCHHHHHhCCcEEEEEEecC-
Confidence 6 345556667777 9999999999988899999999996 9999999642 34555555544 99999997664
Q ss_pred cccccHHHHHHHHHcCC
Q 016978 326 KSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (379)
+.+++++++++++||
T Consensus 158 --~~d~~~~l~l~~~GK 172 (172)
T d1h2ba2 158 --YVELHELVTLALQGK 172 (172)
T ss_dssp --HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHHHcCC
Confidence 368999999999885
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.2e-25 Score=181.40 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=111.3
Q ss_pred ceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCcC
Q 016978 10 CKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEVQ 86 (379)
Q Consensus 10 ~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~~ 86 (379)
|||+++++++++ +++++++.|+|++|||+|||.|++||++|++...|.++.. .+|.++|+|++|+|+++|. ..++
T Consensus 1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~ 78 (146)
T d1o89a1 1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH 78 (146)
T ss_dssp CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence 899999999987 7889999999999999999999999999999999987655 7899999999999999876 4799
Q ss_pred CCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCCC
Q 016978 87 PGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQ 166 (379)
Q Consensus 87 ~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~ 166 (379)
+||+|++.... .|.. .+ |+|+||+.+|++.++++|++
T Consensus 79 ~g~~v~~~~~~------------------------~g~~-~~------------------G~~Aey~~v~~~~vv~lP~~ 115 (146)
T d1o89a1 79 AGQEVLLTGWG------------------------VGEN-HW------------------GGLAEQARVKGDWLVAMPQG 115 (146)
T ss_dssp TTCEEEEECTT------------------------BTTT-BC------------------CSSBSEEEECGGGCEECCTT
T ss_pred ceeeEEeeccc------------------------ceec-CC------------------CcceeeeeeeeeeEEECCCC
Confidence 99999764320 1211 23 49999999999999999999
Q ss_pred CCccccccccccchhhhhhh
Q 016978 167 APLDKVCLLGCGVPTGLGAV 186 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l 186 (379)
+|+++||+++++..||+.++
T Consensus 116 ls~~eAA~l~~a~~tA~~~~ 135 (146)
T d1o89a1 116 QAAKEISLSEAPNFAEAIIN 135 (146)
T ss_dssp SCCEEECGGGHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999998888886543
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=6.5e-27 Score=192.97 Aligned_cols=151 Identities=18% Similarity=0.159 Sum_probs=127.4
Q ss_pred cceeeeeecCCCC--eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC-CCCcccccceeEEEEEeCCCCCCc
Q 016978 9 TCKAAVAWEPNKP--LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG-LFPCILGHEAAGIVESVGEGVTEV 85 (379)
Q Consensus 9 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~-~~p~~~G~e~~G~V~~vG~~v~~~ 85 (379)
+|||+++++++++ +++++++.|++++|||||||.|+|||++|++.+.|.++.. ..|.++|+|++|+|++ +.++++
T Consensus 3 ~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~~ 80 (162)
T d1tt7a1 3 LFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPRF 80 (162)
T ss_dssp EEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTTC
T ss_pred cEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--cccccc
Confidence 6999999998876 9999999999999999999999999999999999987655 6678999999999998 556789
Q ss_pred CCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceEecCC
Q 016978 86 QPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDP 165 (379)
Q Consensus 86 ~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~ 165 (379)
++||+|+..... .|.. .+ |+|+||+.+|++.++++|+
T Consensus 81 ~~g~~v~~~~~~------------------------~g~~-~~------------------G~~aey~~v~~~~l~~iP~ 117 (162)
T d1tt7a1 81 AEGDEVIATSYE------------------------LGVS-RD------------------GGLSEYASVPGDWLVPLPQ 117 (162)
T ss_dssp CTTCEEEEESTT------------------------BTTT-BC------------------CSSBSSEEECGGGEEECCT
T ss_pred ccceeeEeeecc------------------------ceec-cc------------------cccceEEEecHHHEEECCC
Confidence 999999754321 1111 23 4999999999999999999
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-Ch
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GT 205 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~ 205 (379)
++++++||.+++..+|||.++.. .+...+++|||+|+ |.
T Consensus 118 ~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga~G~ 157 (162)
T d1tt7a1 118 NLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGR 157 (162)
T ss_dssp TCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCCSSE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCcce
Confidence 99999999999999999987543 44556688888876 54
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=4.2e-25 Score=183.23 Aligned_cols=164 Identities=23% Similarity=0.346 Sum_probs=141.0
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+++++||.++|++.|||+++ +++++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++++
T Consensus 1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence 57899999999999999986 56899999999999999999999999999998 99999999999999999999999998
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
++ .++.+.+++.+. +++.+++++++++.++.++++++++ |+++.+|.... ..+++...++. ++++.|+..++
T Consensus 79 ~~--~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~k~~~i~Gs~~~~- 151 (166)
T d1llua2 79 RQ--EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPPG--DFPTPIFDVVLKGLHIAGSIVGT- 151 (166)
T ss_dssp TT--SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCSS--EEEEEHHHHHHTTCEEEECCSCC-
T ss_pred cc--hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecCC--CccCCHHHHHhCCcEEEEEeecC-
Confidence 87 678888877665 4666677778888999999999996 99999998644 44555555444 99999987653
Q ss_pred cccccHHHHHHHHHcC
Q 016978 326 KSRSQVPWLVDKYMKK 341 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~ 341 (379)
+++++++++++++|
T Consensus 152 --~~d~~e~l~l~~~G 165 (166)
T d1llua2 152 --RADLQEALDFAGEG 165 (166)
T ss_dssp --HHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHCc
Confidence 46899999999887
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.92 E-value=3.8e-27 Score=197.46 Aligned_cols=155 Identities=21% Similarity=0.145 Sum_probs=128.3
Q ss_pred ccceeeeeecCCCC---eE--EEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCC----------CCCccccccee
Q 016978 8 ITCKAAVAWEPNKP---LV--IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEG----------LFPCILGHEAA 72 (379)
Q Consensus 8 ~~~~a~~~~~~~~~---~~--~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~----------~~p~~~G~e~~ 72 (379)
.||||+++.++|+| ++ ..++|.|+|+++||||||.+++||++|++.++|..+.. ..|.++|+|++
T Consensus 2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~ 81 (175)
T d1gu7a1 2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL 81 (175)
T ss_dssp EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence 47999999999987 44 45777788899999999999999999999988865432 45778999999
Q ss_pred EEEEEeCCCCCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeee
Q 016978 73 GIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQY 152 (379)
Q Consensus 73 G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 152 (379)
|+|+++|..+..++.||+|..... .. |+|+||
T Consensus 82 g~V~~~~~~~~~~~~g~~v~~~~~------------------------------~~------------------g~~aey 113 (175)
T d1gu7a1 82 FEVIKVGSNVSSLEAGDWVIPSHV------------------------------NF------------------GTWRTH 113 (175)
T ss_dssp EEEEEECTTCCSCCTTCEEEESSS------------------------------CC------------------CCSBSE
T ss_pred cccccccccccccccccceecccc------------------------------cc------------------ccccce
Confidence 999999999999999999975432 22 399999
Q ss_pred EEecCcceEecCCCCCccccccccccchhhhhhhhh-ccCCCCCCEEEEEc-C-ChHHHHHHH
Q 016978 153 TVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWN-TAKVEPGSIVAVFG-L-GTVGLAVAE 212 (379)
Q Consensus 153 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~G-a-g~vG~~a~~ 212 (379)
+.+++++++++|++++.+.+ +.+..+|||+++.. ..++++|++|||+| + |++|++++|
T Consensus 114 ~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ 174 (175)
T d1gu7a1 114 ALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174 (175)
T ss_dssp EEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred eeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence 99999999999998754443 44577888888764 46799999999996 4 779988776
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.9e-25 Score=186.58 Aligned_cols=128 Identities=22% Similarity=0.313 Sum_probs=120.0
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+|+++||+++++++|||++|.+.++++|||+|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++++|
T Consensus 1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence 5889999999999999999988899999999999977 8899999999999999 9999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+++ .++.+.++++|++ ++|+++|+.|+ +.+..++.+++++ |+++.+|...
T Consensus 80 ~~~--~d~~~~v~~~t~g~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~ 130 (179)
T d1qora2 80 YRE--EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFGNSS 130 (179)
T ss_dssp TTT--SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEE-EEEEECCCTT
T ss_pred CCC--CCHHHHHHHHhCCCCeEEEEeCccH-HHHHHHHHHHhcC-Ceeeeccccc
Confidence 988 8999999999988 99999999987 5699999999996 9999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.91 E-value=3.7e-24 Score=178.15 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=136.0
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+|+++||++. ++++||+++ +++++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.+++.
T Consensus 1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence 5788988774 678999985 77899999999999999999999999999999 89999999999999999999987765
Q ss_pred CCCCc---hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeec
Q 016978 247 KDHDK---PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAF 322 (379)
Q Consensus 247 ~~~~~---~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~ 322 (379)
+.... +..+.+++..++++|+||||+|++.+++.++++++++ |+++.+|.+.. ..++++..++. ++++.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~--~~~~~~~~~~~k~i~i~gs~~ 154 (170)
T d1e3ja2 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ--MVTVPLVNACAREIDIKSVFR 154 (170)
T ss_dssp CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCSS--CCCCCHHHHHTTTCEEEECCS
T ss_pred cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCCC--CCCcCHHHHHHCCCEEEEEEC
Confidence 44323 3344555554559999999999999999999999996 99999998654 34555555544 888888743
Q ss_pred CCCcccccHHHHHHHHHcCC
Q 016978 323 GGFKSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ 342 (379)
+.++++++++++++|+
T Consensus 155 ----~~~~~~~ai~li~~Gk 170 (170)
T d1e3ja2 155 ----YCNDYPIALEMVASGR 170 (170)
T ss_dssp ----CSSCHHHHHHHHHTTS
T ss_pred ----CHHHHHHHHHHHHcCC
Confidence 2358999999999885
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=2.6e-24 Score=178.80 Aligned_cols=167 Identities=23% Similarity=0.393 Sum_probs=142.9
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNP 246 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~ 246 (379)
+|+++||++++++.|||+++ +..+++||++|||+|+|++|++++|+|+..|+ +|++++++++|+++++++|+++++++
T Consensus 1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~ 78 (168)
T d1rjwa2 1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence 57899999999999999986 56789999999999999999999999999999 89999999999999999999999999
Q ss_pred CCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecCCC
Q 016978 247 KDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGF 325 (379)
Q Consensus 247 ~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 325 (379)
.+ .++.+.+++.+.+. |.+++++++.+.++.++++++++ |+++.+|.... +.+++...++. ++++.++..+
T Consensus 79 ~~--~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~~--~~~~~~~~~~~~~~~i~gs~~~-- 150 (168)
T d1rjwa2 79 LK--EDAAKFMKEKVGGV-HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE--EMPIPIFDTVLNGIKIIGSIVG-- 150 (168)
T ss_dssp TT--SCHHHHHHHHHSSE-EEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS--EEEEEHHHHHHTTCEEEECCSC--
T ss_pred cc--chhhhhcccccCCC-ceEEeecCCHHHHHHHHHHhccC-CceEecccccC--CCCCCHHHHHHCCcEEEEEeeC--
Confidence 87 78888899988754 44456667778899999999996 99999998654 33444444444 8899888655
Q ss_pred cccccHHHHHHHHHcCCCC
Q 016978 326 KSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~ 344 (379)
++++++++++++++|+++
T Consensus 151 -~~~~~~~~l~l~~~Gkik 168 (168)
T d1rjwa2 151 -TRKDLQEALQFAAEGKVK 168 (168)
T ss_dssp -CHHHHHHHHHHHHTTSCC
T ss_pred -CHHHHHHHHHHHHhCCCC
Confidence 346899999999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=5e-25 Score=183.07 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=131.3
Q ss_pred CCccccccccccchhhhhh---hhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGA---VWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~---l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+|+++||+++++++|||++ |++.++.++|++|||+|+ |++|.+++|+|+.+|+ +|+++.++++|.++++++|+++
T Consensus 1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~ 79 (176)
T d1xa0a2 1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE 79 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence 5789999999999999966 456788999999999987 9999999999999999 8999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~ 321 (379)
++++++ .+.+.++...++++|+|||+.|+ +.+..++.+|+++ |+++.+|... +...+++...++. ++++.|..
T Consensus 80 vi~~~~---~~~~~~~~~~~~gvD~vid~vgg-~~~~~~l~~l~~~-Griv~~G~~~-g~~~~~~~~~~~~k~~~i~Gv~ 153 (176)
T d1xa0a2 80 VLARED---VMAERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTG-GAEVPTTVHPFILRGVSLLGID 153 (176)
T ss_dssp EEECC------------CCSCCEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCS-SSCCCCCSHHHHHTTCEEEECC
T ss_pred eeecch---hHHHHHHHhhccCcCEEEEcCCc-hhHHHHHHHhCCC-ceEEEeeccc-CcccCCCHHHHHHCCcEEEEEe
Confidence 999865 34444444444499999999998 5699999999996 9999999863 3445566555544 88998864
Q ss_pred cCCCcccccHHHHHHHHHcCCCCC
Q 016978 322 FGGFKSRSQVPWLVDKYMKKEIKV 345 (379)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~ 345 (379)
... ...++..++++.+ .++++|
T Consensus 154 ~~~-~~~~~~~~~~~~l-ag~lkP 175 (176)
T d1xa0a2 154 SVY-CPMDLRLRIWERL-AGDLKP 175 (176)
T ss_dssp SSS-CCHHHHHHHHHHH-HTTTCC
T ss_pred CCc-CCHHHHHHHHHHH-hcccCC
Confidence 322 2234555566665 366664
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.91 E-value=1.9e-24 Score=181.95 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=133.6
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
+++.++++|||++|.+.+++++||+|||+|+ |++|++++|+|+.+|+ +||++++++++.++++++|+++++++++ .
T Consensus 8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--~ 84 (182)
T d1v3va2 8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--V 84 (182)
T ss_dssp TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C
T ss_pred HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc--c
Confidence 4577889999999999999999999999988 9999999999999999 9999999999999999999999999887 7
Q ss_pred hHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC-----CcccccCcceeee-ccEEEeeecCC
Q 016978 252 PIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS-----GQEISTRPFQLVT-GRVWKGTAFGG 324 (379)
Q Consensus 252 ~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~-----~~~~~~~~~~~~~-~~~i~~~~~~~ 324 (379)
++.+.+.+.+.+ |+|+|||++|. +.++.++.+++++ |+++.+|.... .....+.+..++. ++++.+++...
T Consensus 85 ~~~~~~~~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~ 162 (182)
T d1v3va2 85 NSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR 162 (182)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred cHHHHHHHHhhcCCCceeEEecCc-hhhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence 777777777766 99999999997 6799999999996 99999996432 1222333344444 88999887665
Q ss_pred Ccc---cccHHHHHHHHHcC
Q 016978 325 FKS---RSQVPWLVDKYMKK 341 (379)
Q Consensus 325 ~~~---~~~~~~~~~~~~~~ 341 (379)
+.. .+.++++++++++|
T Consensus 163 ~~~~~~~~~~~~l~~~i~~G 182 (182)
T d1v3va2 163 WQGDVREKALRDLMKWVLEG 182 (182)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHhCc
Confidence 421 23356677777654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1e-24 Score=181.13 Aligned_cols=165 Identities=20% Similarity=0.276 Sum_probs=134.5
Q ss_pred CccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 168 PLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 168 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+++.||.+.|+..|+|+++ ++.+++||++|||+|+|++|++++|+|+.+|+ +|++++++++|++.++++|+++++++.
T Consensus 2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~ 79 (168)
T d1piwa2 2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL 79 (168)
T ss_dssp CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence 4466889999999999986 56899999999999999999999999999999 899999999999999999999999876
Q ss_pred CCCchHHHHHHHhcCCCccEEEEcCCCHH--HHHHHHHHhccCCceEEEEccCCCCcccccCcceeeeccEEEeeecCCC
Q 016978 248 DHDKPIQQVLVDLTDGGVDYSFECIGNVS--VMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGF 325 (379)
Q Consensus 248 ~~~~~~~~~i~~~~~~g~d~vid~~g~~~--~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 325 (379)
+. .++. +...+++|+++||.++.. .++.++++++++ |+++.+|.......+++.+. +++++++.|+..++
T Consensus 80 ~~-~~~~----~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~-~~k~~~i~Gs~~g~- 151 (168)
T d1piwa2 80 EE-GDWG----EKYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQHEMLSLKPY-GLKAVSISYSALGS- 151 (168)
T ss_dssp GT-SCHH----HHSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCSSCCEEECGG-GCBSCEEEECCCCC-
T ss_pred ch-HHHH----HhhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccccccccHHHH-HhCCcEEEEEeeCC-
Confidence 52 2332 222348999999987643 467889999996 99999998665444444333 34488999887654
Q ss_pred cccccHHHHHHHHHcCCCC
Q 016978 326 KSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~~i~ 344 (379)
+++++++++++++|+|+
T Consensus 152 --~~~~~e~l~li~~gkIk 168 (168)
T d1piwa2 152 --IKELNQLLKLVSEKDIK 168 (168)
T ss_dssp --HHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHHHHHhCCCC
Confidence 46899999999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.9e-24 Score=179.53 Aligned_cols=164 Identities=24% Similarity=0.348 Sum_probs=132.5
Q ss_pred CCCccccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 166 QAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 166 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+.+++.+|.+.|+..|+|+++ +++++++|++|||+|+|++|++++|+|+.+|+ ++++++.+++|+++++++|++++++
T Consensus 3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~ 80 (168)
T d1uufa2 3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN 80 (168)
T ss_dssp GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence 445677888999999999986 67899999999999999999999999999999 7778889999999999999999999
Q ss_pred CCCCCchHHHHHHHhcC-CCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 323 (379)
+.+ .+.. ... +++|++||++|.+..++.++.+++++ |+++.+|.... ....+++..++ +++++.|+..+
T Consensus 81 ~~~--~~~~-----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~l~~k~~~i~Gs~~~ 151 (168)
T d1uufa2 81 SRN--ADEM-----AAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPAT-PHKSPEVFNLIMKRRAIAGSMIG 151 (168)
T ss_dssp TTC--HHHH-----HTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSC
T ss_pred Cch--hhHH-----HHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCC-CcccccHHHHHHCCcEEEEEeec
Confidence 876 3321 222 38999999999988899999999996 99999997543 33344444444 48899988765
Q ss_pred CCcccccHHHHHHHHHcCCC
Q 016978 324 GFKSRSQVPWLVDKYMKKEI 343 (379)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i 343 (379)
+ ..+++++++++++++|
T Consensus 152 ~---~~d~~e~l~l~a~~~I 168 (168)
T d1uufa2 152 G---IPETQEMLDFCAEHGI 168 (168)
T ss_dssp C---HHHHHHHHHHHHHHTC
T ss_pred C---HHHHHHHHHHHHHcCC
Confidence 4 4688999999887664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.8e-24 Score=179.93 Aligned_cols=146 Identities=22% Similarity=0.297 Sum_probs=118.7
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVN 245 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~ 245 (379)
+++++||+++++++|||+++ ++++++|||+|||+|+ |++|++++|+|+.+|+ +|++++++++|++.++++|++++++
T Consensus 1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~ 78 (171)
T d1iz0a2 1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT 78 (171)
T ss_dssp CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence 57899999999999999987 5589999999999987 9999999999999999 8999999999999999999999998
Q ss_pred CCCCCchHHHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeecC
Q 016978 246 PKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAFG 323 (379)
Q Consensus 246 ~~~~~~~~~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 323 (379)
+.+ . ..+.+.+ |+|+||||+|. .+++++++++++ |+++.+|.... ...++++..++. ++++.+++..
T Consensus 79 ~~~----~---~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~-G~~v~~G~~~g-~~~~~~~~~~~~k~~~i~g~~~~ 147 (171)
T d1iz0a2 79 YAE----V---PERAKAWGGLDLVLEVRGK--EVEESLGLLAHG-GRLVYIGAAEG-EVAPIPPLRLMRRNLAVLGFWLT 147 (171)
T ss_dssp GGG----H---HHHHHHTTSEEEEEECSCT--THHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHH
T ss_pred hhh----h---hhhhhccccccccccccch--hHHHHHHHHhcC-CcEEEEeCCCC-CCCCccHHHHHHCCcEEEEEeCc
Confidence 754 2 2334445 89999999884 489999999996 99999997532 344555555544 9999998765
Q ss_pred CC
Q 016978 324 GF 325 (379)
Q Consensus 324 ~~ 325 (379)
.+
T Consensus 148 ~~ 149 (171)
T d1iz0a2 148 PL 149 (171)
T ss_dssp HH
T ss_pred Ch
Confidence 43
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.88 E-value=1.7e-23 Score=177.03 Aligned_cols=172 Identities=13% Similarity=0.152 Sum_probs=132.9
Q ss_pred CCccccccccccchhhhhhhhhccCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEcCC----hhHHHHHHhcCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDID----PKKFDRAKNFGV 240 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-Ga-g~vG~~a~~la~~~g~~~vi~v~~~----~~~~~~~~~lg~ 240 (379)
+|+++||+++++++|||++|.+.++++||++|||+ |+ |++|++++|+||.+|+ +||++.++ +++.+.++++|+
T Consensus 1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa 79 (189)
T d1gu7a2 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA 79 (189)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence 57899999999999999999999999999999997 65 9999999999999999 78777544 345678889999
Q ss_pred ceEeCCCCC-CchHHHHHHHhc---CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-cc
Q 016978 241 TEFVNPKDH-DKPIQQVLVDLT---DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GR 315 (379)
Q Consensus 241 ~~v~~~~~~-~~~~~~~i~~~~---~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~ 315 (379)
++++++++. ..++.+.+++.+ ++++|++||++|+ +.+..++++|+++ |++|.+|... +.+.+++...++. ++
T Consensus 80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~-~~~~~~~~~l~~~-G~~v~~G~~~-~~~~~~~~~~l~~k~~ 156 (189)
T d1gu7a2 80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNN-GLMLTYGGMS-FQPVTIPTSLYIFKNF 156 (189)
T ss_dssp SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCH-HHHHHHHHTSCTT-CEEEECCCCS-SCCEEECHHHHHHSCC
T ss_pred cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCc-chhhhhhhhhcCC-cEEEEECCcc-CCCccCcHHHHHHCCc
Confidence 999987531 244555555543 3489999999997 5589999999996 9999999753 3345555554443 88
Q ss_pred EEEeeecCCCcc------cccHHHHHHHHHcCC
Q 016978 316 VWKGTAFGGFKS------RSQVPWLVDKYMKKE 342 (379)
Q Consensus 316 ~i~~~~~~~~~~------~~~~~~~~~~~~~~~ 342 (379)
++.|++++.+.. .+.+.++++++++|+
T Consensus 157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 189 (189)
T d1gu7a2 157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK 189 (189)
T ss_dssp EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence 999886643311 234667777777764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2.1e-22 Score=170.54 Aligned_cols=166 Identities=26% Similarity=0.291 Sum_probs=132.8
Q ss_pred cccccccccchhhhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 170 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
++.+++...+.|||+++ +++++++|++|||+|+|++|++++++|+.+|+.+|++++.+++|+++++++|+++++++.+
T Consensus 2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~- 79 (195)
T d1kola2 2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD- 79 (195)
T ss_dssp HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence 35667788999999996 6799999999999999999999999999999989999999999999999999999999887
Q ss_pred CchHHHHHHHhcCC-CccEEEEcCCC---------------HHHHHHHHHHhccCCceEEEEccCCCCcccc--------
Q 016978 250 DKPIQQVLVDLTDG-GVDYSFECIGN---------------VSVMRAALECCHKGWGTSVIVGVAASGQEIS-------- 305 (379)
Q Consensus 250 ~~~~~~~i~~~~~~-g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~-------- 305 (379)
.++.+.+.+++++ ++|++||++|. +.+++.++++++++ |+++.+|.+....+..
T Consensus 80 -~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~~ 157 (195)
T d1kola2 80 -TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIG 157 (195)
T ss_dssp -SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHTT
T ss_pred -cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhcC
Confidence 7899999999998 99999999983 46899999999996 9999999865432211
Q ss_pred ---cCcceee-eccEEEeeecCCCcccccHHHHHHHHHcCC
Q 016978 306 ---TRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVDKYMKKE 342 (379)
Q Consensus 306 ---~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (379)
+....++ +++++.+ +..+.+..++++++++.++|
T Consensus 158 ~~~~~~~~~~~k~~~i~~---g~~~v~~~~~~Ll~~I~~~k 195 (195)
T d1kola2 158 SLSIRFGLGWAKSHSFHT---GQTPVMKYNRALMQAIMWDR 195 (195)
T ss_dssp CCCCCHHHHHHTTCEEEE---SSCCHHHHHHHHHHHHHTTS
T ss_pred ceeeeHHHHHhhcceecc---CCCchHHHHHHHHHHHHcCC
Confidence 1111111 2444432 22233455777888776654
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.2e-22 Score=171.45 Aligned_cols=171 Identities=18% Similarity=0.229 Sum_probs=124.9
Q ss_pred CCccccccccccchhhhhhhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVWNTAKVEPG--SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-FDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-~~~~~~lg~~~ 242 (379)
+|+.+.| ++++.+|||++|++.+++++| ++|||+|+ |++|++++|+|+.+|+++|++++.++++ .++++++|+++
T Consensus 2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~ 80 (187)
T d1vj1a2 2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA 80 (187)
T ss_dssp GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence 4566654 667899999999999999988 88999986 9999999999999999778777666655 55666899999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCC-cccccCcc-------ee-ee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG-QEISTRPF-------QL-VT 313 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~-~~~~~~~~-------~~-~~ 313 (379)
++|+.+ +++.+.+++.++.|+|+|||++|+ +.++.++++++++ |+++.+|..+.. ...+..+. .+ .+
T Consensus 81 vi~~~~--~~~~~~~~~~~~~GvDvv~D~vGg-~~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k 156 (187)
T d1vj1a2 81 AVNYKT--GNVAEQLREACPGGVDVYFDNVGG-DISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKER 156 (187)
T ss_dssp EEETTS--SCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHHT
T ss_pred Eeeccc--hhHHHHHHHHhccCceEEEecCCc-hhHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHhc
Confidence 999988 889999999987799999999997 6699999999996 999999974321 11111111 01 12
Q ss_pred ccEEEeeecCCCcc--cccHHHHHHHHHcCC
Q 016978 314 GRVWKGTAFGGFKS--RSQVPWLVDKYMKKE 342 (379)
Q Consensus 314 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~ 342 (379)
++++.++.+..+.. .+.++++.+++.+|+
T Consensus 157 ~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk 187 (187)
T d1vj1a2 157 NITRERFTVLNYKDKFEPGILQLSQWFKEGK 187 (187)
T ss_dssp TCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred ceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence 56666665543321 233556666666664
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=6e-21 Score=158.55 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=118.3
Q ss_pred CCccccccccccchhhhhhhh---hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
+|+.+||+++++.+|||++++ +....+++++|||+|+ |++|.+++|+||.+|+ +||++.++++|.+.++++|+++
T Consensus 1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~ 79 (177)
T d1o89a2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR 79 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence 578899999999999997753 3344555679999977 9999999999999999 8999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceee-eccEEEeee
Q 016978 243 FVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTA 321 (379)
Q Consensus 243 v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~-~~~~i~~~~ 321 (379)
++++++ .++. +.+.+..+|.++|++|+ ..+...+.+++++ |+++.+|.... ...+++...++ +++++.|++
T Consensus 80 vi~~~~--~~~~---~~l~~~~~~~vvD~Vgg-~~~~~~l~~l~~~-Griv~~G~~~~-~~~~~~~~~~~~k~~~i~G~~ 151 (177)
T d1o89a2 80 VLPRDE--FAES---RPLEKQVWAGAIDTVGD-KVLAKVLAQMNYG-GCVAACGLAGG-FTLPTTVMPFILRNVRLQGVD 151 (177)
T ss_dssp EEEGGG--SSSC---CSSCCCCEEEEEESSCH-HHHHHHHHTEEEE-EEEEECCCTTC-SCCCCCSHHHHHHCCEEEECC
T ss_pred cccccc--HHHH---HHHHhhcCCeeEEEcch-HHHHHHHHHhccc-cceEeecccCC-ccccccHHHHHHCCCeEEEEe
Confidence 999876 3322 22333468999999998 5699999999996 99999998643 34455544444 488999875
Q ss_pred cC
Q 016978 322 FG 323 (379)
Q Consensus 322 ~~ 323 (379)
..
T Consensus 152 ~~ 153 (177)
T d1o89a2 152 SV 153 (177)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=1.6e-20 Score=154.42 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=108.5
Q ss_pred cchhhh---hhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchH
Q 016978 178 GVPTGL---GAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPI 253 (379)
Q Consensus 178 ~~~ta~---~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~ 253 (379)
+..||| ++|.+....+++++|||+|+ |++|.+++|+|+.+|+ +||++.++++|.+.++++|+++++++++ +
T Consensus 4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----~ 78 (167)
T d1tt7a2 4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----V 78 (167)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----H
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----h
Confidence 345565 45666667778999999987 9999999999999999 8999999999999999999999987643 2
Q ss_pred HHHHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCCCcccccCcceeee-ccEEEeeec
Q 016978 254 QQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAF 322 (379)
Q Consensus 254 ~~~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~~i~~~~~ 322 (379)
.....+.+.+ ++|+|||+.|+ +.+..++++++++ |+++.+|.... ...+++...++. ++++.|...
T Consensus 79 ~~~~~~~~~~~gvd~vid~vgg-~~~~~~~~~l~~~-G~iv~~G~~~g-~~~~~~~~~l~~k~~~i~G~~~ 146 (167)
T d1tt7a2 79 YDGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGG-GEVPATVYPFILRGVSLLGIDS 146 (167)
T ss_dssp CSSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSC-SCEEECSHHHHTSCCEEEECCS
T ss_pred hchhhhcccCCCceEEEecCcH-HHHHHHHHHhccC-ceEEEeeccCC-CcccCCHHHHHHCCcEEEEEec
Confidence 2222233344 99999999998 5699999999996 99999998643 455665555544 899988654
|
| >d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.59 E-value=9.9e-15 Score=116.27 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=98.8
Q ss_pred ccceeeeeecC--CCC----eEEEEeeCCCCCCCeEEEEEeeeeccccccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 016978 8 ITCKAAVAWEP--NKP----LVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 81 (379)
Q Consensus 8 ~~~~a~~~~~~--~~~----~~~~~~~~p~~~~~~VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 81 (379)
++.|++++.+. |.| |++++.+.|+|++||||||++|.++++....... ..+...++..+++|+|++ |+
T Consensus 2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~----~~~~g~~~~g~~vg~Vv~--S~ 75 (147)
T d1v3va1 2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK----RLKEGAVMMGQQVARVVE--SK 75 (147)
T ss_dssp CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG----GSCTTSBCCCCEEEEEEE--ES
T ss_pred cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc----ccccCCccccceEEEEEE--eC
Confidence 35688888775 544 9999999999999999999999999875433222 122233566688999988 67
Q ss_pred CCCcCCCCEEeecCCcCCCCCccccCCCCCCCCCccCccccceecCCCccccccCCCcccccCCcceeeeeEEecCcceE
Q 016978 82 VTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVA 161 (379)
Q Consensus 82 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 161 (379)
++.|++||+|... ++|+||..++.+.+.
T Consensus 76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~ 103 (147)
T d1v3va1 76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE 103 (147)
T ss_dssp CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence 7899999999621 289999999999999
Q ss_pred ecCCCCCc-----cccccccccchh-hhhhhhhccCCCCCCEEEE
Q 016978 162 KIDPQAPL-----DKVCLLGCGVPT-GLGAVWNTAKVEPGSIVAV 200 (379)
Q Consensus 162 ~iP~~~~~-----~~aa~l~~~~~t-a~~~l~~~~~~~~g~~VlI 200 (379)
++|++.+. ...+++....+| ||..++.. .+.|++||+
T Consensus 104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~~--~k~Getvv~ 146 (147)
T d1v3va1 104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLNG--ANLGKAVVT 146 (147)
T ss_dssp ECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHTT--CCSSEEEEE
T ss_pred EccccccccccchhhhHhccccchHHHHHHhhCC--CCCCCEEEe
Confidence 99876543 334456656666 55455444 467999987
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=6e-15 Score=103.10 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCccccccccccchhhhhhhh---hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 167 APLDKVCLLGCGVPTGLGAVW---NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 167 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+|+++|+.++++..|||.+++ +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.+++++.++++++|+
T Consensus 1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA 77 (77)
T d1o8ca2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA 77 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence 578899999999999988764 4556789999999987 9999999999999999 89999999999999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.92 E-value=1e-05 Score=63.91 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+..+|+|+|+|..|+.|+..|+.+|+ .|.++|.+.++++.+++.....+ ....+ ...+.+.++ .+|+||-++
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~-~~~l~~~~~-----~aDivI~aa 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSN-SAEIETAVA-----EADLLIGAV 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECC-HHHHHHHHH-----TCSEEEECC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhh-hhhHHHhhc-----cCcEEEEee
Confidence 45799999999999999999999999 99999999999998887543321 11111 134444443 389999875
Q ss_pred CC-----HHH-HHHHHHHhccCCceEEEEccCCC
Q 016978 273 GN-----VSV-MRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 273 g~-----~~~-~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
=- +.+ -+.+++.++++ +.+|++.....
T Consensus 104 lipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG 136 (168)
T d1pjca1 104 LVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG 136 (168)
T ss_dssp CCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred ecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence 32 121 36788899997 99999976443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.88 E-value=3.9e-05 Score=61.29 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC------------------CchHHH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH------------------DKPIQQ 255 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~------------------~~~~~~ 255 (379)
+..+|+|+|+|.+|+.|+..|+.+|+ +|.++|.+.++++.+++++...+....+. .....+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 34699999999999999999999999 99999999999999999987654211000 011223
Q ss_pred HHHHhcCCCccEEEEcCCC-----HH-HHHHHHHHhccCCceEEEEccCCC
Q 016978 256 VLVDLTDGGVDYSFECIGN-----VS-VMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~-----~~-~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
.+.+... ..|+||-++=- |. .-+++++.|+++ +.+|++.....
T Consensus 107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG 155 (183)
T d1l7da1 107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG 155 (183)
T ss_dssp HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence 3333222 58999976432 12 236788899997 99999976543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=8.5e-05 Score=63.28 Aligned_cols=105 Identities=25% Similarity=0.229 Sum_probs=73.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+++.+...+ .|..+ ..+..+.+.+.. .+++|++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~G~iDiL 80 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED-ERERVRFVEEAAYALGRVDVL 80 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC-HHHHHHHHHHHHHHHSCCCEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC-HHHHHHHHHHHHHhcCCCCeE
Confidence 46899999988 9999999999999999 99999999999998888877543 23322 122233333322 1479999
Q ss_pred EEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccCC
Q 016978 269 FECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVAA 299 (379)
Q Consensus 269 id~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~~ 299 (379)
++++|.. ...+.++..|.+ +.|+||.++...
T Consensus 81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~ 137 (248)
T d2d1ya1 81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 137 (248)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence 9988751 124555555644 238999887543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.72 E-value=5.9e-05 Score=60.15 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=56.2
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
++..++.++++|||+|+|+.+.+++..++..|++++.++.++.+|.+.+.+ ++.. .++... ...+
T Consensus 9 l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~-~~~~~~-------------~~~~ 74 (167)
T d1npya1 9 IEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YINSLE-------------NQQA 74 (167)
T ss_dssp HHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EESCCT-------------TCCC
T ss_pred HHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhh-hhhccc-------------ccch
Confidence 455667788999999999999999999999999899999999998776654 4443 232211 1258
Q ss_pred cEEEEcCC
Q 016978 266 DYSFECIG 273 (379)
Q Consensus 266 d~vid~~g 273 (379)
|+|++|++
T Consensus 75 DliINaTp 82 (167)
T d1npya1 75 DILVNVTS 82 (167)
T ss_dssp SEEEECSS
T ss_pred hhheeccc
Confidence 99999865
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00011 Score=62.60 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-Ee--CCCCCCchHHHHHHHhcC--CCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-FV--NPKDHDKPIQQVLVDLTD--GGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-v~--~~~~~~~~~~~~i~~~~~--~g~d~ 267 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+..... .+ |..+ ..+..+.+.+... +++|+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~iDi 82 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ-EDDVKTLVSETIRRFGRLDC 82 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS-HHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC-HHHHHHHHHHHHHhcCCCCE
Confidence 5899999988 9999999999999999 8999999999887766543332 22 2222 1233333333221 47999
Q ss_pred EEEcCCCH--------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 268 SFECIGNV--------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 268 vid~~g~~--------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++++|.. ...+.++..|+++.|+++.++..
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~ 139 (250)
T d1ydea1 83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL 139 (250)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence 99988740 12455565665545899988643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.67 E-value=0.00017 Score=61.54 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=71.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCC--CchHHHHHHHhc--CCCccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDH--DKPIQQVLVDLT--DGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~--~~~~~~~i~~~~--~~g~d~ 267 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++....+..-+. ..+..+.+.... .+.+|+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi 83 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence 6899999987 9999999999999999 899999998876644 45666554322221 122222233222 247999
Q ss_pred EEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 268 SFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 268 vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+++++|.. ...+.++..|+...|+||.++...
T Consensus 84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~ 140 (253)
T d1hxha_ 84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS 140 (253)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence 99998851 125566666765459999987643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.65 E-value=0.00038 Score=54.70 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH-HHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF-DRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
--.+.+|||+|+|.+|.++++.+...|+++++++.++.+|. ++++++|.. +..+ .++.+.+. .+|+||.
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~----~~~~~~l~-----~~Divi~ 90 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF----DELVDHLA-----RSDVVVS 90 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG----GGHHHHHH-----TCSEEEE
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc----hhHHHHhc-----cCCEEEE
Confidence 34789999999999999999999999998899999997775 567778753 4433 23444433 4999999
Q ss_pred cCCCH------HHHHHHHHHhccCCc--eEEEEccC
Q 016978 271 CIGNV------SVMRAALECCHKGWG--TSVIVGVA 298 (379)
Q Consensus 271 ~~g~~------~~~~~~~~~l~~~~G--~iv~~g~~ 298 (379)
|++.+ +.+...+..-..+ . .+++++.+
T Consensus 91 atss~~~ii~~~~i~~~~~~r~~~-~~~~iiDlavP 125 (159)
T d1gpja2 91 ATAAPHPVIHVDDVREALRKRDRR-SPILIIDIANP 125 (159)
T ss_dssp CCSSSSCCBCHHHHHHHHHHCSSC-CCEEEEECCSS
T ss_pred ecCCCCccccHhhhHHHHHhcccC-CCeEEEeecCC
Confidence 99874 2234433322221 2 46677654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=7.3e-06 Score=68.47 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=71.4
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEe-CCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFV-NPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~-~~~~~~~~~~~~i~~ 259 (379)
+++..++++|++||-+|+|. |..++.+|+..|. .+|++++.+++..+.+++ .+.+.+. ...+ .. ..
T Consensus 67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d--~~-----~~ 138 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD--GY-----YG 138 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GG-----GC
T ss_pred HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc--hH-----Hc
Confidence 46778899999999999875 8889999998874 389999999988777764 3443221 1111 00 01
Q ss_pred hc-CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 260 LT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 260 ~~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.. .+.||+|+...+-.+....+++.|+++ |+++..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p 174 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP 174 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred cccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence 11 236999998766655456788999997 999863
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.48 E-value=0.00021 Score=60.57 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=56.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE-eCCCCCCchHHHHHHHhc--CCCccEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF-VNPKDHDKPIQQVLVDLT--DGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v-~~~~~~~~~~~~~i~~~~--~~g~d~v 268 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. ++++..+ .|..+ ..+..+.+.+.. .+++|++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iDil 81 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD-PASVERGFAEALAHLGRLDGV 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC-HHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC-HHHHHHHHHHHHHhcCCceEE
Confidence 5899999988 9999999999999999 8999999998876654 4555443 23322 123333333222 1479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.46 E-value=2.6e-05 Score=64.89 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=71.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceEeCCCCCCchHHHHHHHhc
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
+++...+++|++||.+|+| .|..++.+|+..|. +|++++.+++-.+.+ +++|.+.+..... +. .....
T Consensus 70 ml~~L~l~~g~~VLeIGsG-sGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g---d~---~~g~~ 141 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG---DG---SKGFP 141 (215)
T ss_dssp HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CG---GGCCG
T ss_pred HHHhhccCccceEEEecCC-CChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC---cc---ccCCc
Confidence 4677789999999999986 58888889988886 899999987655444 4567655432211 00 01112
Q ss_pred -CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 262 -DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 -~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.||.|+-+.+-+..-...++.|+++ |++|..
T Consensus 142 ~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p 175 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP 175 (215)
T ss_dssp GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred ccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence 237999987766655557788899997 999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00032 Score=59.35 Aligned_cols=103 Identities=27% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCce---EeCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTE---FVNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~---v~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +++... ..|..+ ..+..+.+.+.. .+++|
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD-PASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHTCSCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC-HHHhhhhhhhhhcccCCcc
Confidence 5899999988 9999999999999999 8999999998866554 455432 233333 122333333322 24899
Q ss_pred EEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccC
Q 016978 267 YSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 267 ~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
++++++|.. ...+.++..+.+ ++|+||.++..
T Consensus 81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~ 138 (243)
T d1q7ba_ 81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV 138 (243)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence 999988761 124555555532 23899988753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00054 Score=57.96 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE--eCCCCCCchHHHHHHHhcCCCccEE
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v--~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
-.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +++.... .|..+ .+..+.+.+.. +++|++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~-g~iDil 80 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD--WEATERALGSV-GPVDLL 80 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTTC-CCCCEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHHh-CCceEE
Confidence 36899999988 9999999999999999 8999999998876554 4443332 33333 33333333222 479999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
++++|.
T Consensus 81 VnnAg~ 86 (244)
T d1pr9a_ 81 VNNAAV 86 (244)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 998876
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.39 E-value=0.00041 Score=59.25 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCC--CchHHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDH--DKPIQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~--~~~~~~~i~~~~~~ 263 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.+.... .|..+. -..+.+.+.+..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 6899999987 9999999999999999 899999998775543 44555442 233321 11233344455445
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
..|++++++|.
T Consensus 84 ~idilinnag~ 94 (258)
T d1ae1a_ 84 KLNILVNNAGV 94 (258)
T ss_dssp CCCEEEECCCC
T ss_pred CcEEEeccccc
Confidence 79999998886
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=0.00077 Score=57.21 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=68.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-----HHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-----AKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-----~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. .++.|.... .|..+ ..+..+.+.+.. .
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN-YEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHHHHHHc
Confidence 5899999988 9999999999999999 89999999876543 334565432 23332 122222333322 1
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
+++|++++++|.. ...+.++..|.+ +.|+++.++..
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 4799999998851 235556666643 23799988653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.38 E-value=0.00016 Score=61.30 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cC-CceE-eCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG-VTEF-VNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg-~~~v-~~~~~~~~~~~~~i~ 258 (379)
+..+.+++||++||=.|+|. |.++..+|+..|. .+|++++.+++..+.+++ ++ .+.+ +...+ + .
T Consensus 77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~D----i----~ 147 (250)
T d1yb2a1 77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD----I----A 147 (250)
T ss_dssp ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC----T----T
T ss_pred HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEee----e----e
Confidence 45678899999999999863 7778888988764 389999999998888764 22 2222 11111 1 1
Q ss_pred Hhc-CCCccEEE-EcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLT-DGGVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~-~~g~d~vi-d~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.. .+.||.|+ |.......+..+.+.|+++ |+++.+..
T Consensus 148 ~~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P 187 (250)
T d1yb2a1 148 DFISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP 187 (250)
T ss_dssp TCCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred cccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeC
Confidence 122 23799877 5544456789999999997 99997743
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.36 E-value=0.00082 Score=57.34 Aligned_cols=79 Identities=22% Similarity=0.403 Sum_probs=54.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+. +.|.+.. .|..+ ..+..+.+.... .+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS-EEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHhC
Confidence 6899999988 9999999999999999 8999999988766443 3454432 23222 122233332221 24
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 82 ~iDilVnnaG~ 92 (260)
T d1zema1 82 KIDFLFNNAGY 92 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCeehhhhcc
Confidence 79999998774
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0011 Score=55.86 Aligned_cols=105 Identities=23% Similarity=0.259 Sum_probs=69.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~ 263 (379)
.|+++||+|+ +++|...+..+...|+ +|+.+++++++++.+ ++.|.... .|..+ ..+..+.++... .+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN-REDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcC
Confidence 5899999988 9999999999999999 999999999887644 34554432 23333 123333333322 34
Q ss_pred CccEEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccCCC
Q 016978 264 GVDYSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVAAS 300 (379)
Q Consensus 264 g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~~~ 300 (379)
.+|++++++|.. .+.+.++..+.+ ++|++|.++....
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~ 146 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG 146 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence 799999998861 123444454433 3478998876543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00035 Score=59.24 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=58.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+.........+-...+..+...+.. ++.|+++++.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~id~lVn~a 82 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV-ERLDVLFNVA 82 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-SCCSEEEECC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeecccccccccccccc-ccceeEEecc
Confidence 6899999988 9999999999999999 99999999988776665433332222222245555554443 4799999998
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
|.
T Consensus 83 g~ 84 (245)
T d2ag5a1 83 GF 84 (245)
T ss_dssp CC
T ss_pred cc
Confidence 86
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.30 E-value=0.00073 Score=54.79 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCC-ceEeCCCCCCchHHHHHHHhcCCC
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGV-TEFVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~-~~v~~~~~~~~~~~~~i~~~~~~g 264 (379)
--+|++|||+|+ |++|..++..+...|+ +|+.+++++++.+.+.+ ... ....+..+ . +.+.+.. ++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~--~---~~~~~~~-~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD--D---ASRAEAV-KG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS--H---HHHHHHT-TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc--H---HHHHHHh-cC
Confidence 347999999998 9999999999999999 89999999988765543 121 12233332 1 2233332 46
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++|+++|.
T Consensus 93 iDilin~Ag~ 102 (191)
T d1luaa1 93 AHFVFTAGAI 102 (191)
T ss_dssp CSEEEECCCT
T ss_pred cCeeeecCcc
Confidence 9999999774
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00092 Score=56.91 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=54.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCc-eE----eCCCCCCch---HHHHHHHh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVT-EF----VNPKDHDKP---IQQVLVDL 260 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~-~v----~~~~~~~~~---~~~~i~~~ 260 (379)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.+.. .+ .|-.+ +++ +.+.+.+.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN-EEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC-HHHHHHHHHHHHHh
Confidence 5899999988 9999999999999999 899999998886654 333321 22 23332 133 33333333
Q ss_pred cCCCccEEEEcCCC
Q 016978 261 TDGGVDYSFECIGN 274 (379)
Q Consensus 261 ~~~g~d~vid~~g~ 274 (379)
. +++|++++++|.
T Consensus 87 ~-g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 H-SGVDICINNAGL 99 (257)
T ss_dssp H-CCCSEEEECCCC
T ss_pred c-CCCCEEEecccc
Confidence 2 479999999886
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.27 E-value=0.0005 Score=58.08 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE--eCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF--VNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v--~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +++.... .|..+ .+..+.+.+.. +++|+++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~-g~iDilV 79 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD--WDATEKALGGI-GPVDLLV 79 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHTTC-CCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC--HHHHHHHHHHc-CCCeEEE
Confidence 5899999988 9999999999999999 8999999988765544 4433222 23333 33333322221 4899999
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
+++|.
T Consensus 80 nnAg~ 84 (242)
T d1cyda_ 80 NNAAL 84 (242)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 99875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00071 Score=58.05 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-----cCCce-EeCCCCCCchHHHHH-HHh--cC
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-----FGVTE-FVNPKDHDKPIQQVL-VDL--TD 262 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-----lg~~~-v~~~~~~~~~~~~~i-~~~--~~ 262 (379)
-+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.+ .+... .+..+.......+.+ ... ..
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 46899999988 9999999999999999 99999999988766542 23322 121111112222221 111 12
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+..|+++++.|.. ...+.++..++.+.|+++.++...
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~ 152 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLA 152 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccch
Confidence 3789988876651 123444444554348998887543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00075 Score=53.60 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c---CCceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F---GVTEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l---g~~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
..+|++|||+|+|+.+.+++..+..+|+ +|+.+.|+.+|.+.+.+ + +....+..++ .....+|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----------~~~~~~dl 82 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----------LEGHEFDL 82 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----------GTTCCCSE
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc-----------ccccccce
Confidence 4578999999999999999999999999 79999999988765543 2 2212222211 11236899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+++|+.-
T Consensus 83 iIN~Tp~ 89 (170)
T d1nyta1 83 IINATSS 89 (170)
T ss_dssp EEECCSC
T ss_pred eeccccc
Confidence 9999765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.22 E-value=0.00078 Score=57.45 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=54.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHH---HHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQ---QVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~---~~i~~~~~ 262 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +.|.... .|..+ ..+.. +.+.+...
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS-RSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC-HHHHHHHHHHHHHHhC
Confidence 6899999988 9999999999999999 8999999988765443 3454332 23222 12222 23333333
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++++++|.
T Consensus 85 ~~idilvnnAG~ 96 (259)
T d2ae2a_ 85 GKLNILVNNAGI 96 (259)
T ss_dssp TCCCEEEECCCC
T ss_pred CCceEEEECCce
Confidence 369999999885
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.21 E-value=0.00093 Score=56.09 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC----CchHHHHHHHhcCC-CccE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH----DKPIQQVLVDLTDG-GVDY 267 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~----~~~~~~~i~~~~~~-g~d~ 267 (379)
+|++|||+|+ +++|.+.++.+...|+ +|+.++..+++.. .....+..... ...+...+.+.... ++|+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 74 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA 74 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence 4899999988 9999999999999999 8999877654311 11112211111 01223333333333 7999
Q ss_pred EEEcCCC--------------------------HHHHHHHHHHhccCCceEEEEccC
Q 016978 268 SFECIGN--------------------------VSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 268 vid~~g~--------------------------~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+++++|. -...+.++..++++ |+++.++..
T Consensus 75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~ 130 (236)
T d1dhra_ 75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAK 130 (236)
T ss_dssp EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccH
Confidence 9999874 01245566678886 999998764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.20 E-value=0.00019 Score=59.89 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=68.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----eEeCCCCCCchHHHHHHHhc
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----EFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----~v~~~~~~~~~~~~~i~~~~ 261 (379)
+++...+++|++||-+|+| .|..++.+|+. +. +|++++.+++..+.+++.-.. .++..+. ...+ ..
T Consensus 62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~-~~g~------~~ 131 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-TLGY------EE 131 (224)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-GGCC------GG
T ss_pred HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCch-hhcc------hh
Confidence 4677789999999999986 57788888876 44 899999999988887764221 1221111 0000 11
Q ss_pred CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 262 DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.||.|+-+.+-+.....+++.|+++ |++|..
T Consensus 132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred hhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence 237999887666656567778999997 999875
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.18 E-value=0.00047 Score=58.35 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCCceE---eCCCCCCchHHHHHHHhcC--CCc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGVTEF---VNPKDHDKPIQQVLVDLTD--GGV 265 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~~~v---~~~~~~~~~~~~~i~~~~~--~g~ 265 (379)
-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++.... .|..+ ..+..+.+++... +++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ-PAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC-HHHHHHHHHHHHHHhCCC
Confidence 36899999988 9999999999999999 8999999998876554 4543332 23322 1233333333222 479
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 82 dilinnAG~ 90 (244)
T d1nffa_ 82 HVLVNNAGI 90 (244)
T ss_dssp CEEEECCCC
T ss_pred eEEEECCcc
Confidence 999999886
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.13 E-value=0.0011 Score=56.51 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHH----HHHhcCCceEe---CCCCCCchH---HHHHHH
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFD----RAKNFGVTEFV---NPKDHDKPI---QQVLVD 259 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~----~~~~lg~~~v~---~~~~~~~~~---~~~i~~ 259 (379)
.-.|++|||+|+ +++|.+.++.+...|+ +|+.. .++++..+ .+++.|.+... |..+ ..+. .+.+.+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK-PSEVVALFDKAVS 80 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC-HHHHHHHHHHHHH
Confidence 456999999988 9999999999999999 77764 45555433 34456765432 2222 1222 223333
Q ss_pred hcCCCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEcc
Q 016978 260 LTDGGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.. ++.|++++++|.. .+.+.++..++++ |.++.+..
T Consensus 81 ~~-g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s 141 (259)
T d1ja9a_ 81 HF-GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS 141 (259)
T ss_dssp HH-SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred Hc-CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence 32 3799999988861 2467777788886 88877754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.12 E-value=0.0021 Score=53.99 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=70.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEe---CCCCCCchHHHHHHHhcC--CCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFV---NPKDHDKPIQQVLVDLTD--GGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~---~~~~~~~~~~~~i~~~~~--~g~d 266 (379)
.|+++||+|+ +++|.+.++-+...|+ +|+.+++++++.+.+ ++++.+..+ |..+ .++..+.+.+... +++|
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~-~~~i~~~~~~i~~~~g~iD 81 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD-PKAVEAVFAEALEEFGRLH 81 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC-HHHHHHHHHHHHHHhCCcc
Confidence 6899999988 9999999999999999 999999998876544 457765432 2222 2333333333322 4799
Q ss_pred EEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccCC
Q 016978 267 YSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 267 ~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
++++++|.. ...+..+..+..+ +.++..+...
T Consensus 82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a 138 (241)
T d2a4ka1 82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVA 138 (241)
T ss_dssp EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCT
T ss_pred Eeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccc
Confidence 999987751 1245556667775 7777665543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00099 Score=56.93 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=72.7
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCce-E-eCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTE-F-VNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~-v-~~~~~~~~~~~~~i~ 258 (379)
+....+++||++||=.|+|. |.+++.+|+..|. .+|++++.+++..+.+++ +|... + +...+ +.
T Consensus 95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d--------~~ 165 (266)
T d1o54a_ 95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD--------IS 165 (266)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC--------GG
T ss_pred HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc--------cc
Confidence 56788999999999999864 7888899998863 389999999998877764 45422 2 22222 11
Q ss_pred HhcCC-CccEEEEcCCC-HHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDG-GVDYSFECIGN-VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~-g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~g 296 (379)
..... .+|.|+--... ...++.+.+.|+++ |+++.+.
T Consensus 166 ~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~ 204 (266)
T d1o54a_ 166 EGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC 204 (266)
T ss_dssp GCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence 12223 78877654444 56789999999997 9998764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.11 E-value=0.0015 Score=55.32 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=54.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHh--cCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDL--TDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~--~~~ 263 (379)
.++.+||+|+ +++|.+.+..+...|+ +|+.+++++++++.+ ++.|.... .|..+ ..+..+.+.+. ..+
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK-KEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC-HHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHhcC
Confidence 4788999988 9999999998889999 899999998876543 34555432 23322 12233333322 124
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 89999998876
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=97.11 E-value=0.00043 Score=59.71 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=54.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ +++|.... .|..+ ..+..+.+.+.. .+.+|
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~id 81 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS-LEDQKQAASRCVARFGKID 81 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc-HHHHHHHHHHHHHHhCCcc
Confidence 5899999988 9999999999999999 999999999887544 45654432 23222 122223332222 24799
Q ss_pred EEEEcCC
Q 016978 267 YSFECIG 273 (379)
Q Consensus 267 ~vid~~g 273 (379)
++++++|
T Consensus 82 ilvnnAG 88 (276)
T d1bdba_ 82 TLIPNAG 88 (276)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9999887
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=97.11 E-value=0.00058 Score=58.10 Aligned_cols=79 Identities=25% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++.... .|..+ ..+..+.+.+.. .+++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 81 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI-EEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC-HHHHHHHHHHHHHHcCCcc
Confidence 6899999988 9999999999999999 899999998876554 45654332 22222 123333332221 14799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ilVnnAg~ 89 (254)
T d1hdca_ 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEecCcc
Confidence 99998875
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.10 E-value=0.00048 Score=58.71 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=56.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHhcCCceEe---CCCCCCchHHHHHHHhc--CCCcc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFD-RAKNFGVTEFV---NPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~-~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++ .++++|..... |..+ ..+..+.+.+.. .+++|
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~~g~iD 81 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD-QASIDRCVAELLDRWGSID 81 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC-HHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 5899999988 9999999999999999 8999999988765 44567765432 3332 123333333322 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 82 ilVnnAg~ 89 (256)
T d1k2wa_ 82 ILVNNAAL 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 99999885
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.09 E-value=0.00087 Score=57.16 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce---EeCCCCCCch---HHHHHHHhcC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE---FVNPKDHDKP---IQQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~---v~~~~~~~~~---~~~~i~~~~~ 262 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +.+... ..|..+ ..+ +.+.+.+...
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL-RPEREKLMQTVSSMFG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC-HHHHHHHHHHHHHHhC
Confidence 6899999988 9999999999999999 8999999988765443 233322 123332 122 3333333334
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+.+|++++++|.
T Consensus 85 g~idilvnnAG~ 96 (259)
T d1xq1a_ 85 GKLDILINNLGA 96 (259)
T ss_dssp TCCSEEEEECCC
T ss_pred CCcccccccccc
Confidence 579999999886
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.09 E-value=0.0016 Score=55.75 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC-hhHHH----HHHhcCCceEeCCCCC--CchHHHHHHHhcC--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID-PKKFD----RAKNFGVTEFVNPKDH--DKPIQQVLVDLTD--G 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~-~~~~~----~~~~lg~~~v~~~~~~--~~~~~~~i~~~~~--~ 263 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.++++ ++..+ .+++.|.+.....-+. ..++.+.+.+... +
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 5899999988 9999999999999999 88887665 44333 3445665543322111 2333333333222 4
Q ss_pred CccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEccC
Q 016978 264 GVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 264 g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++|+++++.|.. ...+.++..|.++ |+++.++..
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~ 154 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI 154 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence 799999987761 2366777778886 888888653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.08 E-value=0.00013 Score=61.47 Aligned_cols=97 Identities=24% Similarity=0.311 Sum_probs=62.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC----CchHHHHHHHh-cCCCccEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH----DKPIQQVLVDL-TDGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~----~~~~~~~i~~~-~~~g~d~v 268 (379)
+.+|||+|+ +++|.+.++.+...|+ +|+.+++++++.. .....+..+.. .....+.+... ..+.+|++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 457999988 9999999999999999 8999988765321 11111111111 01112222222 23479999
Q ss_pred EEcCCC--------------------------HHHHHHHHHHhccCCceEEEEccC
Q 016978 269 FECIGN--------------------------VSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 269 id~~g~--------------------------~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++++|. -...+..+..++++ |+++.++..
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~ 130 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA 130 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccH
Confidence 999874 01245666778886 999998754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.0017 Score=54.40 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.++++++++ ++.+...+. |.. ......+.++ +.+|+++++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~---~~~~~~~~~~--g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLR---KDLDLLFEKV--KEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTT---TCHHHHHHHS--CCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchH---HHHHHHHHHh--CCCcEEEec
Confidence 5899999988 9999999999999999 899999887654 445544332 222 2333333332 479999998
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
+|.
T Consensus 74 AG~ 76 (234)
T d1o5ia_ 74 AGG 76 (234)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.02 E-value=0.0053 Score=44.81 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=62.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~--~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.|++|||+|+|.+|..-++.+...|+ +|++++.. ++-.+++++-... .....-...++ .++++|+-+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~-~~~~~~~~~dl---------~~~~lv~~a 79 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLT-LVEGPFDETLL---------DSCWLAIAA 79 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCE-EEESSCCGGGG---------TTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCce-eeccCCCHHHh---------CCCcEEeec
Confidence 47999999999999999999999999 77777543 3334444432222 22111101111 268999999
Q ss_pred CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+....-......+++. |.+|.+.+
T Consensus 80 t~d~~~n~~i~~~a~~~-~ilVNv~D 104 (113)
T d1pjqa1 80 TDDDTVNQRVSDAAESR-RIFCNVVD 104 (113)
T ss_dssp CSCHHHHHHHHHHHHHT-TCEEEETT
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEeCC
Confidence 99977556777778884 99988755
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.01 E-value=0.0019 Score=51.15 Aligned_cols=97 Identities=11% Similarity=-0.054 Sum_probs=61.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.+++|||+|+|.+|..+++.+...|+ +|++++++.++.+.+.+-.......... ........... ...|.++.+..
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~i-~~~~~~i~~~~ 76 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLD--VNDDAALDAEV-AKHDLVISLIP 76 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECC--TTCHHHHHHHH-TTSSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhccccccccccc--ccchhhhHhhh-hccceeEeecc
Confidence 36899999999999999999988899 8999999999888776533323222221 11111111111 14788888777
Q ss_pred CHHHHHHHHHHhccCCceEEEE
Q 016978 274 NVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.......+..++..+ -.++..
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~ 97 (182)
T d1e5qa1 77 YTFHATVIKSAIRQK-KHVVTT 97 (182)
T ss_dssp GGGHHHHHHHHHHHT-CEEECS
T ss_pred chhhhHHHHHHHhhc-cceeec
Confidence 655455555555553 555544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.97 E-value=0.0016 Score=52.37 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce------------------EeCCCC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE------------------FVNPKD 248 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~------------------v~~~~~ 248 (379)
+....++||++||.+|+| .|..++.||+. |+ +|++++.+++-.+.+++..... ++..+.
T Consensus 13 ~~~l~~~~~~rvLd~GCG-~G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCG-KSQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHCCCTTCEEEETTTC-CSHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHcCCCCCCEEEEecCc-CCHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 445578999999999986 46788888874 99 9999999999988887632110 110000
Q ss_pred CCchHHHHHHHhcCCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.++... ....+|.|++...- ...+..+.+.|+++ |++++..
T Consensus 90 --~~l~~~----~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~ 138 (201)
T d1pjza_ 90 --FALTAR----DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT 138 (201)
T ss_dssp --SSSTHH----HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred --cccccc----cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence 000000 01258999875332 34578888999997 9876553
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00071 Score=57.57 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceEe---CCCCCCchHHHHHHHhc--CC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEFV---NPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~ 263 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.|..... |..+ ..+..+.+.+.. .+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~-~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS-EQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC-HHHHHHHHHHHHHHcC
Confidence 6899999988 9999999999999999 899999998876543 445654422 2222 122222222221 14
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 79999999876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00062 Score=56.72 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=66.1
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCc-------eEeCCCCCCchHHHHHH
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVT-------EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~-------~v~~~~~~~~~~~~~i~ 258 (379)
.++||++||-+|+| .|..++.+|+..|. .+|++++.+++-.+.+++ .+.. .+...+. ..
T Consensus 73 ~l~~g~~VLdiG~G-sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~--------~~ 143 (224)
T d1i1na_ 73 QLHEGAKALDVGSG-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG--------RM 143 (224)
T ss_dssp TSCTTCEEEEETCT-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG--------GG
T ss_pred ccCCCCeEEEecCC-CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec--------cc
Confidence 68999999999986 58888899998873 489999999887766643 2221 1111110 00
Q ss_pred Hhc-CCCccEEEEcCCCHHHHHHHHHHhccCCceEEEE
Q 016978 259 DLT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 259 ~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
... .+.||.|+-+..-.+....+++.|+++ |++|..
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence 111 237999998766656567788999997 999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.96 E-value=0.0041 Score=49.42 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=59.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCC--------CCchHHHHHHHhcCCCcc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKD--------HDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~--------~~~~~~~~i~~~~~~g~d 266 (379)
+++|.|+|+|.+|.+.+..+...|+ .|+..++++++.+.+++.+......... ...+..+.+ ..+|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~aD 74 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDAD 74 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-----cCCC
Confidence 3689999999999999999999999 9999999999999888766432211110 012222222 2589
Q ss_pred EEEEcCCCHH---HHHHHHHHhcc
Q 016978 267 YSFECIGNVS---VMRAALECCHK 287 (379)
Q Consensus 267 ~vid~~g~~~---~~~~~~~~l~~ 287 (379)
++|-++.... .+.++...+.+
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~ 98 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISE 98 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCT
T ss_pred EEEEEEchhHHHHHHHHhhhccCC
Confidence 9999987743 33444444555
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.003 Score=54.43 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=71.6
Q ss_pred hhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce-E-eCCCCCCchHHHHH
Q 016978 184 GAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-F-VNPKDHDKPIQQVL 257 (379)
Q Consensus 184 ~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~-v-~~~~~~~~~~~~~i 257 (379)
..+.++++++||++||=+|+| .|..++.+|+..|+ +|++++.+++..+.+++. |... + +...+ +
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d----~---- 121 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCG-WGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG----W---- 121 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC----G----
T ss_pred HHHHHHcCCCCCCEEEEecCc-chHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh----h----
Confidence 346788899999999999986 56778889999999 999999999988777642 3211 1 11111 1
Q ss_pred HHhcCCCccEEEE-----cCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 258 VDLTDGGVDYSFE-----CIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 258 ~~~~~~g~d~vid-----~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+..++.+|.|+. ..+. ...+..+.+.|+++ |++++...
T Consensus 122 -~~~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~i 167 (285)
T d1kpga_ 122 -EQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI 167 (285)
T ss_dssp -GGCCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred -hcccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEEE
Confidence 112347887764 2332 35688899999997 99986543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=96.95 E-value=0.0027 Score=53.65 Aligned_cols=95 Identities=23% Similarity=0.398 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
.++|++||=+|+|. |.+++.++ .+|+ +|++++.+++..+.+++ .|....+.. .+..+ ....+.||+
T Consensus 118 ~~~g~~VLDiGcGs-G~l~i~aa-~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~----~d~~~---~~~~~~fD~ 187 (254)
T d2nxca1 118 LRPGDKVLDLGTGS-GVLAIAAE-KLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE----GSLEA---ALPFGPFDL 187 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHH-HTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE----SCHHH---HGGGCCEEE
T ss_pred cCccCEEEEcccch-hHHHHHHH-hcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe----ccccc---cccccccch
Confidence 67999999998863 66666555 4688 89999999988777764 444322211 12221 122348999
Q ss_pred EEEcCCC---HHHHHHHHHHhccCCceEEEEcc
Q 016978 268 SFECIGN---VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 268 vid~~g~---~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|+..... ...++.+.+.|+++ |++++.|.
T Consensus 188 V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi 219 (254)
T d2nxca1 188 LVANLYAELHAALAPRYREALVPG-GRALLTGI 219 (254)
T ss_dssp EEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred hhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence 9864433 24567788899997 99987654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.0014 Score=56.75 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=72.4
Q ss_pred hhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEeCCCCCCchHHHHHH
Q 016978 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 183 ~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~~~~~~~~i~ 258 (379)
+..+.+++++++|++||=+|+| .|-.+..+|+..|+ +|++++.+++..+.++ +.|....+.... .++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG-~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~--~d~----- 120 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCG-WGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW----- 120 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE--CCG-----
T ss_pred HHHHHHhcCCCCCCEEEEecCc-chHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh--hcc-----
Confidence 3346788999999999999986 34567789999999 9999999998766554 455443221111 111
Q ss_pred HhcCCCccEEEEc-----CCC----------HHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFEC-----IGN----------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g~----------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+..++.||.|+.. .+. ...++.+.+.|+|+ |++++-..
T Consensus 121 ~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i 173 (291)
T d1kpia_ 121 EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI 173 (291)
T ss_dssp GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence 1234579988752 221 35688999999997 99986544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=96.93 E-value=0.0015 Score=55.97 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=54.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hcCC---ceEe--CCCCCCchHHHHHHHhc--CCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NFGV---TEFV--NPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~lg~---~~v~--~~~~~~~~~~~~i~~~~--~~g 264 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++. ...+ |..+ ..+..+.+.+.. .+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK-DEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 6899999988 9999999999999999 8999999998876554 3332 2222 3322 123333333322 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 9999998874
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0021 Score=51.55 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=36.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDR 234 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~ 234 (379)
-.+++|||+|+|+.|.+++..+...|+++++.+.+++++.+.
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~ 57 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK 57 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence 367999999999999999999999999899999998766553
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.91 E-value=0.004 Score=54.15 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh---------hHHH----HHHhcCCceEeCCCCCCchHHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP---------KKFD----RAKNFGVTEFVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~---------~~~~----~~~~lg~~~v~~~~~~~~~~~~~i~~ 259 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+..+++. ++.+ .+...+.....+..+. .+..+.+..
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~~ 83 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSV-EAGEKLVKT 83 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCG-GGHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchH-HHHHHHHHH
Confidence 5899999988 9999999999999999 888876532 2222 2223444444554441 233333332
Q ss_pred hc--CCCccEEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccC
Q 016978 260 LT--DGGVDYSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVA 298 (379)
Q Consensus 260 ~~--~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~ 298 (379)
.. .+++|++++++|.. ...+.++..|++ ++|+||.++..
T Consensus 84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~ 150 (302)
T d1gz6a_ 84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA 150 (302)
T ss_dssp HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence 21 24799999998851 124555555532 24899988754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0016 Score=55.83 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCEE-EEEcC-ChHHHHHHH-HHHHcCCCeEEEEcCChhHHHHH----HhcCCce-E--eCCCCC--CchHHHHHHHhcC
Q 016978 195 GSIV-AVFGL-GTVGLAVAE-GAKAAGASRVIGIDIDPKKFDRA----KNFGVTE-F--VNPKDH--DKPIQQVLVDLTD 262 (379)
Q Consensus 195 g~~V-lI~Ga-g~vG~~a~~-la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~-v--~~~~~~--~~~~~~~i~~~~~ 262 (379)
|++| ||+|+ +++|+++++ |++.-|+ +|+.+++++++.+.+ ++.|... + .|..+. -..+.+.+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~- 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY- 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence 6778 66788 999998775 5555688 899999999886544 3334332 2 233321 112333444432
Q ss_pred CCccEEEEcCCCH-------------------------HHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSFECIGNV-------------------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.+|++++.+|-. ...+.++..|+++ |+++.++.
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS 138 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS 138 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence 4799999988851 1345566667885 99998865
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.90 E-value=0.0052 Score=46.19 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=55.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++.. ++..+. .-.+.+++..-..+|.++-++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~---~~~~~l~~~~i~~a~~vv~~t~~d 76 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC---TKIKTLEDAGIEDADMYIAVTGKE 76 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT---TSHHHHHHTTTTTCSEEEECCSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcc---cchhhhhhcChhhhhhhcccCCcH
Confidence 68999999999999999999999 89999999999887765 5654 333222 112234444334789999988884
Q ss_pred H
Q 016978 276 S 276 (379)
Q Consensus 276 ~ 276 (379)
+
T Consensus 77 ~ 77 (132)
T d1lssa_ 77 E 77 (132)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.87 E-value=0.00072 Score=57.31 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=54.3
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhcCCce--Ee--CCCCC--CchHHHHHHHhcCC-Cc
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTE--FV--NPKDH--DKPIQQVLVDLTDG-GV 265 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~lg~~~--v~--~~~~~--~~~~~~~i~~~~~~-g~ 265 (379)
.++|||+|+ +++|.+.++.+...|+. +|+.+.+++++.+.+++..... ++ |..+. -..+.+.+.+..+. +.
T Consensus 3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i 82 (250)
T d1yo6a1 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL 82 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence 379999988 99999988888888863 6888889998887776643322 22 33321 12233444444333 69
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 83 dilinnAG~ 91 (250)
T d1yo6a1 83 SLLINNAGV 91 (250)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999999884
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=96.84 E-value=0.0025 Score=54.03 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH-------HHHHHhcCCceEe---CCCCCCchHHHHHHH
Q 016978 191 KVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK-------FDRAKNFGVTEFV---NPKDHDKPIQQVLVD 259 (379)
Q Consensus 191 ~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~-------~~~~~~lg~~~v~---~~~~~~~~~~~~i~~ 259 (379)
.++|+.+|||+|+ |++|++.+..+...|+++|+.+.++..+ .+.+++.|....+ |..+ ..+..+.+..
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d-~~~~~~~~~~ 83 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD-RESVRELLGG 83 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC-HHHHHHHHHT
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch-HHHHHHhhcc
Confidence 5789999999987 9999999988888999667777765322 2333456664432 3332 1333334444
Q ss_pred hcCC-CccEEEEcCCC
Q 016978 260 LTDG-GVDYSFECIGN 274 (379)
Q Consensus 260 ~~~~-g~d~vid~~g~ 274 (379)
.... ..|.++++.|.
T Consensus 84 i~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 84 IGDDVPLSAVFHAAAT 99 (259)
T ss_dssp SCTTSCEEEEEECCCC
T ss_pred cccccccccccccccc
Confidence 4334 78999998885
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0013 Score=55.92 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=66.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-c----C-CceE---eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-F----G-VTEF---VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-l----g-~~~v---~~~~~~~~~~~~~i~~~~-- 261 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ + + .... .|..+ ..++.+.+.+..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD-QQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC-HHHHHHHHHHHHHH
Confidence 4899999988 9999999999999999 89999999887654432 2 1 1111 23332 122333333322
Q ss_pred CCCccEEEEcCCCH-----------------HHHHHHHHHhccC----CceEEEEccC
Q 016978 262 DGGVDYSFECIGNV-----------------SVMRAALECCHKG----WGTSVIVGVA 298 (379)
Q Consensus 262 ~~g~d~vid~~g~~-----------------~~~~~~~~~l~~~----~G~iv~~g~~ 298 (379)
.+++|++++++|.. .....++..+.+. .|+||.++..
T Consensus 80 ~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred cCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 24799999998861 1234444555431 2789988754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.84 E-value=0.00091 Score=57.05 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-----HHhcCCceE---eCCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-----AKNFGVTEF---VNPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-----~~~lg~~~v---~~~~~~~~~~~~~i~~~~--~ 262 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++. .++.|.+.. .|..+ ..+..+.+.+.. .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN-TDIVTKTIQQIDADL 85 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC-HHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 5899999988 9999999999999999 89999998765432 234565432 23322 122333333321 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 86 g~iDilVnnAg~ 97 (260)
T d1h5qa_ 86 GPISGLIANAGV 97 (260)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCcEecccccc
Confidence 489999998874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=96.83 E-value=0.0018 Score=54.66 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCceEe---CCCCCCchHHHHHHHhc--CCCc
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFV---NPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.++++++ ..+.++++|..... |..+ ..+..+.+.+.. .+++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~G~i 81 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ-PGDVEAFGKQVISTFGRC 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC-HHHHHHHHHHHHHHcCCC
Confidence 5899999988 9999999999999999 8999887654 23455667765432 3332 123333333322 2479
Q ss_pred cEEEEcCCC
Q 016978 266 DYSFECIGN 274 (379)
Q Consensus 266 d~vid~~g~ 274 (379)
|++++++|.
T Consensus 82 DilVnnAG~ 90 (247)
T d2ew8a1 82 DILVNNAGI 90 (247)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999886
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.83 E-value=0.0045 Score=53.11 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=70.4
Q ss_pred hhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHH
Q 016978 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 183 ~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~ 258 (379)
+..+.++.+++||++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++ .|....+.... .+.
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~--~d~----- 111 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----- 111 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG-----
T ss_pred HHHHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh--hhh-----
Confidence 34467888999999999999863 3456778888899 99999999998777664 34322111100 011
Q ss_pred HhcCCCccEEEEc-----CCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFEC-----IGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+..++.+|.|+-. .+. ...++.+.+.|+|+ |++++-.
T Consensus 112 ~~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~ 156 (280)
T d2fk8a1 112 EDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQS 156 (280)
T ss_dssp GGCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred hhhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEE
Confidence 1123478987642 222 35688899999997 9998753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.83 E-value=0.0015 Score=56.60 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-----HhcCCce-Ee--CCCCCCchHHHHHHHh--cC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-----KNFGVTE-FV--NPKDHDKPIQQVLVDL--TD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-----~~lg~~~-v~--~~~~~~~~~~~~i~~~--~~ 262 (379)
+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+ .+.|... .+ |..+ ..+....+... ..
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~-~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD-PDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC-HHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC-hHHHHHHhhhhhhhc
Confidence 5899999987 9999999999999999 999999998765432 3345443 22 2222 12222222221 23
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 489999999886
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.81 E-value=0.0019 Score=54.91 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g 264 (379)
|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.|.... .|..+ ..+..+.+.+.. .++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~-~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS-VPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC-HHHHHHHHHHHHHHhCC
Confidence 677899988 9999999999999999 899999998776543 34555432 23322 123333333322 247
Q ss_pred ccEEEEcCCC
Q 016978 265 VDYSFECIGN 274 (379)
Q Consensus 265 ~d~vid~~g~ 274 (379)
+|++++++|.
T Consensus 80 iDilVnnAG~ 89 (257)
T d2rhca1 80 VDVLVNNAGR 89 (257)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEecccc
Confidence 9999999885
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00084 Score=54.94 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.++|+|+|+ |.+|..++..+...|+ +|+++.+++++.......++..+. -+- .+. +.+.+.. .+.|+||.++|
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~-gD~--~d~-~~l~~al-~~~d~vi~~~g 76 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVV-GDV--LQA-ADVDKTV-AGQDAVIVLLG 76 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEE-SCT--TSH-HHHHHHH-TTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccccc-ccc--cch-hhHHHHh-cCCCEEEEEec
Confidence 478999998 9999999998889999 899999998886544445554332 221 122 2232322 25899999988
Q ss_pred CH----------HHHHHHHHHhccC-CceEEEEcc
Q 016978 274 NV----------SVMRAALECCHKG-WGTSVIVGV 297 (379)
Q Consensus 274 ~~----------~~~~~~~~~l~~~-~G~iv~~g~ 297 (379)
.. .....+++.++.. -.+++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 52 1223344444442 136777754
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.80 E-value=0.00073 Score=57.48 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=62.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceE----eCCCCCCchHHHHHHHhcC--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEF----VNPKDHDKPIQQVLVDLTD-- 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v----~~~~~~~~~~~~~i~~~~~-- 262 (379)
+|++|||+|+ +++|.+++..+...|+ +|+++.+..++.+.+.+ .+...+ .|.......+.+.+.+...
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 82 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence 5899999988 9999999999999999 77777665554433322 222121 1222111223333333222
Q ss_pred CCccEEEEcCCCH-----------------HHHHHHHHHhcc----CCceEEEEccC
Q 016978 263 GGVDYSFECIGNV-----------------SVMRAALECCHK----GWGTSVIVGVA 298 (379)
Q Consensus 263 ~g~d~vid~~g~~-----------------~~~~~~~~~l~~----~~G~iv~~g~~ 298 (379)
+++|++++++|.. ...+.++..+.+ ..|+++.++..
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~ 139 (254)
T d1sbya1 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV 139 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence 4799999999871 123444444532 12888888654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.80 E-value=0.0045 Score=48.48 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC-ceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-TEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|.|+|+|.+|...+..++..|. +|++.++++++.+.++++|. +...+..+ .. ...|+||-|+...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~----------~~--~~~DiIilavp~~ 68 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS----------LL--QTAKIIFLCTPIQ 68 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG----------GG--TTCSEEEECSCHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc----------cc--cccccccccCcHh
Confidence 58899999999998888889999 89999999999999998885 33332211 11 2588988887653
Q ss_pred ---HHHHHHHHHhccCCceEEEEc
Q 016978 276 ---SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ---~~~~~~~~~l~~~~G~iv~~g 296 (379)
..++++...+.++ ..++..+
T Consensus 69 ~~~~vl~~l~~~l~~~-~iv~~~~ 91 (165)
T d2f1ka2 69 LILPTLEKLIPHLSPT-AIVTDVA 91 (165)
T ss_dssp HHHHHHHHHGGGSCTT-CEEEECC
T ss_pred hhhhhhhhhhhhcccc-cceeecc
Confidence 2334444444553 4454454
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=96.79 E-value=0.0012 Score=56.29 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh-HH----HHHHhcCCceEe---CCCCCCchHHHHHHHhc--C
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK-KF----DRAKNFGVTEFV---NPKDHDKPIQQVLVDLT--D 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~-~~----~~~~~lg~~~v~---~~~~~~~~~~~~i~~~~--~ 262 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.++++.+ +. +.+++.|.+... |..+ ..+..+.+.+.. .
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV-ESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 5899999987 9999999999999999 8999888643 33 334456654322 3322 122322233221 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 84 G~iDiLVnnAG~ 95 (261)
T d1geea_ 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEeecccee
Confidence 479999998876
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.79 E-value=0.0019 Score=54.97 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=53.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----c--CCceE---eCCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----F--GVTEF---VNPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----l--g~~~v---~~~~~~~~~~~~~i~~~~-- 261 (379)
.|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ . +.... .|..+ ..+....+.+..
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD-EAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC-HHHHHHHHHHHHHH
Confidence 5899999988 9999999999999999 89999999887664432 2 22221 23333 123333333222
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 81 ~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 81 FGRIDGFFNNAGI 93 (258)
T ss_dssp HSCCSEEEECCCC
T ss_pred hCCCCEEEECCcc
Confidence 1479999998873
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.77 E-value=0.0035 Score=47.25 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=56.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
++++|.|.|.+|..+++.+...|. .|++++.++++.+.+++.|...++.... +.+. +.+..-..+|.++-++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~-~~~~---l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANAT-EENE---LLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTT-CTTH---HHHHTGGGCSEEEECCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeecc-cchh---hhccCCccccEEEEEcCch
Confidence 357888999999999999999999 8999999999999999888755543222 1332 3332212588888877764
Q ss_pred H
Q 016978 276 S 276 (379)
Q Consensus 276 ~ 276 (379)
.
T Consensus 76 ~ 76 (134)
T d2hmva1 76 I 76 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0021 Score=55.82 Aligned_cols=81 Identities=14% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-hc--------CCceE---eCCCCCCchHHHHHH
Q 016978 192 VEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK-NF--------GVTEF---VNPKDHDKPIQQVLV 258 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~-~l--------g~~~v---~~~~~~~~~~~~~i~ 258 (379)
.-+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++ +.... .|..+ ..+..+.+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~ 86 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN-EEEVNNLVK 86 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC-HHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC-HHHHHHHHH
Confidence 347899999988 9999999999999999 8999999988765432 21 22222 22222 123333333
Q ss_pred Hhc--CCCccEEEEcCCC
Q 016978 259 DLT--DGGVDYSFECIGN 274 (379)
Q Consensus 259 ~~~--~~g~d~vid~~g~ 274 (379)
+.. .+++|++++++|.
T Consensus 87 ~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCeEEEEeeccc
Confidence 322 2479999998875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.75 E-value=0.0015 Score=55.26 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=54.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCC--c-eEe--CCCCCCch---HHHHHHHhcCC
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV--T-EFV--NPKDHDKP---IQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~--~-~v~--~~~~~~~~---~~~~i~~~~~~ 263 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++. . ..+ |..+ ..+ +.+.+.+.. +
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~~~-G 81 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-EDGWTKLFDATEKAF-G 81 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC-HHHHHHHHHHHHHHH-S
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC-HHHHHHHHHHHHHHh-C
Confidence 5899999988 9999999999999999 89999999888765543 322 1 122 3222 122 333333332 4
Q ss_pred CccEEEEcCCC
Q 016978 264 GVDYSFECIGN 274 (379)
Q Consensus 264 g~d~vid~~g~ 274 (379)
++|++++++|.
T Consensus 82 ~iDiLVnnAg~ 92 (251)
T d1zk4a1 82 PVSTLVNNAGI 92 (251)
T ss_dssp SCCEEEECCCC
T ss_pred CceEEEecccc
Confidence 79999999876
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.002 Score=54.16 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=70.5
Q ss_pred hhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHH
Q 016978 183 LGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQ 255 (379)
Q Consensus 183 ~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~ 255 (379)
+..|.+..+++||++||=+|+| .|..+..+++..|+ +|++++.+++-.+.+++ .|... ++..+- .+
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG-~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~--~~--- 94 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSG-SGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA--AG--- 94 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCT-TCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC--TT---
T ss_pred HHHHHHHcCCCCCCEEEEEcCC-CCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHH--hh---
Confidence 3446688899999999999885 35567778888898 99999999987776654 45431 222111 11
Q ss_pred HHHHhcCCCccEEEEcC------CCHHHHHHHHHHhccCCceEEEE
Q 016978 256 VLVDLTDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~------g~~~~~~~~~~~l~~~~G~iv~~ 295 (379)
....+.||.|+-.- .-..++..+.+.|+|+ |+++..
T Consensus 95 ---~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~ 136 (245)
T d1nkva_ 95 ---YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIG 136 (245)
T ss_dssp ---CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEE
T ss_pred ---ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEE
Confidence 01233899988431 1256788999999997 998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00036 Score=58.44 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
..+|.+||-+|+| .|..+..+++..+. +|++++.+++-.+.+++..... .+.... .+.......+..+.||.++
T Consensus 51 ~~~g~~VLdIGcG-~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 51 SSKGGRVLEVGFG-MAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK--GLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTTCEEEEEECCT-TSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE--SCHHHHGGGSCTTCEEEEE
T ss_pred ccCCCeEEEeecc-chHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccc--cccccccccccccccccee
Confidence 4678999999886 46777888886666 8999999999888887643221 010000 2333344445555899874
Q ss_pred -EcCCC----------HHHHHHHHHHhccCCceEEEE
Q 016978 270 -ECIGN----------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 270 -d~~g~----------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
|.... ..++..+.+.|+++ |+++..
T Consensus 127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~ 162 (229)
T d1zx0a1 127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC 162 (229)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred ecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence 65433 23577788999997 999865
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.69 E-value=0.0015 Score=56.04 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc--e----EeCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT--E----FVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~--~----v~~~~~~~~~~~~~i~~~~- 261 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +.+.. . ..|..+ ..+..+.+.+..
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT-EDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 5899999988 9999999999999999 9999999988766543 33321 1 123332 122323333322
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGA 95 (272)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCceEEEeCCcc
Confidence 2479999998774
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.66 E-value=0.0018 Score=55.62 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc--eE----eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT--EF----VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~--~v----~~~~~~~~~~~~~i~~~~- 261 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +.|.. .+ .|..+ ..+..+.+.+..
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE-ASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC-HHHHHHHHHHHHH
Confidence 5899999988 9999999999999999 8999999988766443 34432 11 23333 122223333322
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+.+|++++++|.
T Consensus 81 ~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 81 KFGKIDILVNNAGA 94 (274)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCceEEEeeccc
Confidence 2479999998774
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.0023 Score=53.44 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
..++.+||=+|+| .|..+..+++ .|+ +|++++.+++..+.+++.+...++..+. .++ ...++.+|+|+-.
T Consensus 40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~--~~l-----~~~~~~fD~ii~~ 109 (246)
T d2avna1 40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA--EDL-----PFPSGAFEAVLAL 109 (246)
T ss_dssp CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT--TSC-----CSCTTCEEEEEEC
T ss_pred cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeecccccccccccccccccccccc--ccc-----ccccccccceeee
Confidence 5578899989987 6888888876 588 8999999999999999987766654433 121 1223489998864
Q ss_pred CCC-------HHHHHHHHHHhccCCceEEEE
Q 016978 272 IGN-------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 272 ~g~-------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
... ..++..+.+.|+++ |.++..
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~ 139 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPD-GLLIAT 139 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence 331 34578889999997 988753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.66 E-value=0.0017 Score=55.49 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCc----eE--eCCCCCCchHHHHHHHhc-
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVT----EF--VNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~----~v--~~~~~~~~~~~~~i~~~~- 261 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +.+.. .. .|..+ ..+..+.+.+..
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~-~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT-DAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 6889999988 9999999999999999 8999999988766543 33321 11 23332 122333333322
Q ss_pred -CCCccEEEEcCCC
Q 016978 262 -DGGVDYSFECIGN 274 (379)
Q Consensus 262 -~~g~d~vid~~g~ 274 (379)
.+++|++++++|.
T Consensus 82 ~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 82 KFGKLDILVNNAGA 95 (264)
T ss_dssp HHSCCCEEEECCC-
T ss_pred HhCCCCEeeccccc
Confidence 2479999999874
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.62 E-value=0.0028 Score=52.76 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=68.1
Q ss_pred hhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHH
Q 016978 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 185 ~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~ 258 (379)
.+.+.+.++||++||=+|+| .|.++..+++. ++ +|++++.+++-.+.+++ .+.+. ++..+. .++
T Consensus 7 ~l~~~~~~~~~~rILDiGcG-tG~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~--~~~----- 76 (234)
T d1xxla_ 7 LMIKTAECRAEHRVLDIGAG-AGHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA--ESL----- 76 (234)
T ss_dssp HHHHHHTCCTTCEEEEESCT-TSHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT--TBC-----
T ss_pred HHHHHhCCCCCCEEEEeCCc-CcHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc--ccc-----
Confidence 35678899999999999986 46777777774 66 89999999887666543 34322 222111 111
Q ss_pred HhcCCCccEEEEcCCC------HHHHHHHHHHhccCCceEEEE
Q 016978 259 DLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.++.||+|+-...- ...++.+.+.|+|+ |+++..
T Consensus 77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~ 118 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLV 118 (234)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEE
Confidence 1223479998864221 45689999999997 998875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.0058 Score=51.78 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=71.9
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cC---CceE-eCCCCCCchHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG---VTEF-VNPKDHDKPIQQV 256 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg---~~~v-~~~~~~~~~~~~~ 256 (379)
+....+++||++||=.|+| .|.+++.||+..|. .+|++++.+++..+.+++ ++ .+.+ +...+ ..+
T Consensus 88 Ii~~l~i~PG~~VLE~G~G-sG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d----~~~- 161 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD----LAD- 161 (264)
T ss_dssp HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC----GGG-
T ss_pred HHHHhCCCCCCEEEecCcC-CcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc----ccc-
Confidence 5677889999999999886 58888899999874 489999999998888764 11 1211 11111 100
Q ss_pred HHHhcCCCccEEE-EcCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 257 LVDLTDGGVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 257 i~~~~~~g~d~vi-d~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
..+..+.||.|| |.-.....+..+.+.|+++ |+++.+-
T Consensus 162 -~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~ 200 (264)
T d1i9ga_ 162 -SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV 200 (264)
T ss_dssp -CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred -ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence 012233799765 5544456789999999997 9998773
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00068 Score=59.67 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=68.5
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cC-----------CceE-eCCCC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FG-----------VTEF-VNPKD 248 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg-----------~~~v-~~~~~ 248 (379)
++...+++||++||=.|+| .|.+++.||+..|. .+|++++.+++..+.+++ ++ .+.+ +...+
T Consensus 90 Il~~l~i~pG~rVLE~GtG-sG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 90 ILSMMDINPGDTVLEAGSG-SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHTCCTTCEEEEECCT-TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhCCCCCCEEEEeccc-ccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 5677889999999999886 38889999999875 489999999998887764 11 1111 11111
Q ss_pred CCchHHHHHHHhcCCCccEEE-EcCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 249 HDKPIQQVLVDLTDGGVDYSF-ECIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 249 ~~~~~~~~i~~~~~~g~d~vi-d~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
. .++ ......+.+|.|| |.-.....+.++.+.|+++ |+++.+-
T Consensus 169 i-~~~---~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~ 212 (324)
T d2b25a1 169 I-SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV 212 (324)
T ss_dssp T-TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred h-hhc---ccccCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence 0 011 0111223688766 5433345789999999997 9999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.53 E-value=0.012 Score=46.20 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=63.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
++|+|+|.|.+|...+..++..|. .+|++++++++.++.+++.+.. ......+ .......|+|+-|+.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~dlIila~p 71 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA----------KVEDFSPDFVMLSSP 71 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG----------GGGGTCCSEEEECSC
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh----------hhhccccccccccCC
Confidence 379999999999999999998885 3899999999999999998863 3332211 111125788888776
Q ss_pred CHH---HHHHHHHHhccCCceEEEEcc
Q 016978 274 NVS---VMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 274 ~~~---~~~~~~~~l~~~~G~iv~~g~ 297 (379)
... .+..+...+.++ ..++.++.
T Consensus 72 ~~~~~~vl~~l~~~~~~~-~ii~d~~s 97 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSED-ATVTDQGS 97 (171)
T ss_dssp HHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred chhhhhhhhhhhcccccc-cccccccc
Confidence 532 344455556664 66666654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.50 E-value=0.0045 Score=48.91 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cC---CceEeCCCCCCchHHHHHHHhcCCCccE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FG---VTEFVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg---~~~v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
..++++|+|+|+|+.+.+++..+...+ .+|+.+.|+.++.+.+.+ ++ .......+ ......+|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~-----------~~~~~~~di 82 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMD-----------SIPLQTYDL 82 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG-----------GCCCSCCSE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhc-----------cccccccce
Confidence 457899999999999999988887755 499999999988765543 32 11111111 111236999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
+|+|++.
T Consensus 83 iIN~tp~ 89 (171)
T d1p77a1 83 VINATSA 89 (171)
T ss_dssp EEECCCC
T ss_pred eeecccc
Confidence 9999775
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.48 E-value=0.0041 Score=52.63 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=51.5
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CCCcc
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGVD 266 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~d 266 (379)
.+||+|+ +++|.+.++.+...|+ +|+.+++++++++.+ ++.|.+.. .|..+ ..+..+.+.+.. .+++|
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD-RDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS-HHHHHHHHHHHHHHTTCCC
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHHhCCcc
Confidence 4688988 9999999999889999 899999998876544 34555432 23332 122222333322 24799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
++++++|.
T Consensus 81 ilVnnAG~ 88 (255)
T d1gega_ 81 VIVNNAGV 88 (255)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99998875
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.47 E-value=0.0062 Score=51.42 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEeCCCCC-CchHH---HHHHHhcC
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDH-DKPIQ---QVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~-~~~~~---~~i~~~~~ 262 (379)
+|+++||+|+ | ++|.+.++.+...|+ +|+..+++++..+.++ +.+....+..+-. ..+.. +.+.+. .
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~ 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA-F 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh-c
Confidence 6899999998 5 799999999999999 8988888876544333 3343333322211 12222 222232 2
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+++|++++++|.
T Consensus 85 g~iDilVnnag~ 96 (256)
T d1ulua_ 85 GGLDYLVHAIAF 96 (256)
T ss_dssp SSEEEEEECCCC
T ss_pred CCceEEEecccc
Confidence 479999998864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.47 E-value=0.00056 Score=57.58 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=51.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhc--CCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLT--DGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~--~~g~d~vid 270 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.. ...|..+ ..+..+.+.+.. .+++|++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~-~~~v~~~~~~~~~~~g~iDiLVn 79 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD-SDAVDRAFTAVEEHQGPVEVLVS 79 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC-HHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC-HHHHHHHHHHHHHhcCCceEEEe
Confidence 6899999988 9999999999999999 99999988765432211 1233333 122222232222 247999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
++|.
T Consensus 80 nAG~ 83 (237)
T d1uzma1 80 NAGL 83 (237)
T ss_dssp ECSC
T ss_pred eecc
Confidence 8875
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=96.47 E-value=0.0037 Score=53.03 Aligned_cols=104 Identities=20% Similarity=0.322 Sum_probs=65.5
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHH-----HhcCCceEe---CCCCCCchHHHHHHHhc--
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP-KKFDRA-----KNFGVTEFV---NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~-~~~~~~-----~~lg~~~v~---~~~~~~~~~~~~i~~~~-- 261 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++ ++.+.+ .+.|....+ |..+ ..+..+.+.+..
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK-GEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS-HHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 6899999988 9999999999999999 899998864 444332 234544432 2222 122223232222
Q ss_pred CCCccEEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccCC
Q 016978 262 DGGVDYSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVAA 299 (379)
Q Consensus 262 ~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~~ 299 (379)
.+++|++++++|.. ...+.++..+.+ ++|+||.++...
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 144 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH 144 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence 14799999998851 124445555543 238999887543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=96.45 E-value=0.0037 Score=51.70 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=68.6
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~ 259 (379)
+++.++++++++||=+|+| .|..+..+++. |+ +|++++.+++-.+.+++ .+.+. ++..+. .++ .
T Consensus 7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~--~~l-----~ 76 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQM-----P 76 (231)
T ss_dssp HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CC-----C
T ss_pred HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc--ccc-----c
Confidence 5677899999999999986 56777777654 67 89999999887666653 44432 222222 111 1
Q ss_pred hcCCCccEEEEcCC-----C-HHHHHHHHHHhccCCceEEEEc
Q 016978 260 LTDGGVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 260 ~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+..+.||+|+-.-. . ..++..+.+.|+|+ |+++...
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~ 118 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD 118 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence 22347999985422 1 35689999999997 9998764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.43 E-value=0.0035 Score=50.26 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=65.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-e--EeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-E--FVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~--v~~~~~~~~~~~~~i~ 258 (379)
++...++++|++||=+|+| .|..++.+|+. +. +|++++.+++..+.+++ +|.. . ++.. +..+...
T Consensus 25 il~~l~~~~g~~VLDiGcG-sG~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-----da~~~~~ 96 (186)
T d1l3ia_ 25 IMCLAEPGKNDVAVDVGCG-TGGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-----DAPEALC 96 (186)
T ss_dssp HHHHHCCCTTCEEEEESCT-TSHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-----CHHHHHT
T ss_pred HHHhcCCCCCCEEEEEECC-eEccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-----chhhccc
Confidence 3455688999999999874 34445566654 44 89999999988777764 5542 2 2221 2222221
Q ss_pred HhcCCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
....+|.|+-..+. ...++.+.+.|+++ |+++...
T Consensus 97 --~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~ 134 (186)
T d1l3ia_ 97 --KIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA 134 (186)
T ss_dssp --TSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred --ccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence 12379988854332 45688888999997 9988653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.39 E-value=0.0091 Score=50.00 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=61.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH----HhcCCceE---eCCCCCCchHHHHHHHhc--CCCc
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGI-DIDPKKFDRA----KNFGVTEF---VNPKDHDKPIQQVLVDLT--DGGV 265 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v-~~~~~~~~~~----~~lg~~~v---~~~~~~~~~~~~~i~~~~--~~g~ 265 (379)
.|||+|+ +++|.+.++.+...|+ +|+.. .+++++.+.+ ++.|.+.. .|..+ ..+..+.+.+.. .+++
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~-~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK-EADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS-HHHHHHHHHHHHHHSSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 6788888 9999999999999999 77765 4566554433 34555432 23322 122322333221 2479
Q ss_pred cEEEEcCCCH-------------------------HHHHHHHHHh--ccCCceEEEEccC
Q 016978 266 DYSFECIGNV-------------------------SVMRAALECC--HKGWGTSVIVGVA 298 (379)
Q Consensus 266 d~vid~~g~~-------------------------~~~~~~~~~l--~~~~G~iv~~g~~ 298 (379)
|++++++|.. ...+.++..| +. +|+||.++..
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~ 139 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASV 139 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcCh
Confidence 9999988861 1245555555 34 4999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.009 Score=46.33 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++|+|.|-|-+|...++.++.+|+ +|++++..+-+.-.+.--|. .+. .+.+.+ ...|+++-+
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~-~v~-------~~~~a~-----~~adivvta 86 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGY-EVT-------TMDEAC-----QEGNIFVTT 86 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-EEC-------CHHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCce-Eee-------ehhhhh-----hhccEEEec
Confidence 4589999999999999999999999999 99999998866444333343 222 111111 247999999
Q ss_pred CCCHHHH-HHHHHHhccCCceEEEEccC
Q 016978 272 IGNVSVM-RAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 272 ~g~~~~~-~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|+.+.+ .+.++.|+++ ..+...|-.
T Consensus 87 TGn~~vI~~eh~~~MKdg-aIL~N~Ghf 113 (163)
T d1li4a1 87 TGCIDIILGRHFEQMKDD-AIVCNIGHF 113 (163)
T ss_dssp SSCSCSBCHHHHTTCCTT-EEEEECSSS
T ss_pred CCCccchhHHHHHhccCC-eEEEEeccc
Confidence 9985533 5667778885 666655654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0057 Score=50.68 Aligned_cols=105 Identities=13% Similarity=0.013 Sum_probs=66.9
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce-------------EeCCCCCC----
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE-------------FVNPKDHD---- 250 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~-------------v~~~~~~~---- 250 (379)
+.....++.+||..|+|. |..+..||+ .|+ +|++++.|++-.+.+++..... ........
T Consensus 39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 344578899999999864 777778876 699 9999999999888776532211 00000000
Q ss_pred -chHHHHHHHhcCCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 251 -KPIQQVLVDLTDGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 251 -~~~~~~i~~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.++. .+.....+.+|+|+++..- ...+..+.++|+++ |++++...
T Consensus 116 ~~d~~-~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~ 169 (229)
T d2bzga1 116 CCSIF-DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL 169 (229)
T ss_dssp ESCGG-GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred Ecchh-hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence 0110 0111122378999986432 34678899999997 98776644
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.31 E-value=0.0089 Score=51.14 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=69.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLV 258 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~ 258 (379)
+.....+++|++||=+|+| .|..+..+++..|+ +|++++.++...+.+++ .|.. .++..+. .++
T Consensus 59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~--~~l----- 129 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEI----- 129 (282)
T ss_dssp HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSC-----
T ss_pred HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc--ccc-----
Confidence 4456679999999999986 46677788888898 89999999987766664 3432 1222221 110
Q ss_pred HhcCCCccEEEEcCC------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 259 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 259 ~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
....+.||+|+-.-. ...++..+.+.|+++ |+++....
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~ 173 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP 173 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence 122347999985322 145689999999997 99887643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.02 Score=50.11 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=69.9
Q ss_pred hhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-----------CC----ceEeCCCCC
Q 016978 185 AVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-----------GV----TEFVNPKDH 249 (379)
Q Consensus 185 ~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-----------g~----~~v~~~~~~ 249 (379)
.+++..+++++++||=+|+| .|..+.++|+..++.++++++.+++..+.+++. |. -.++..+-.
T Consensus 142 ~~~~~~~l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 142 QMIDEIKMTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHSCCCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHcCCCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 35678889999999999986 688888999999987899999999877666432 21 123322221
Q ss_pred CchHHHHHHHhcCCCccEEEEc-CC-C---HHHHHHHHHHhccCCceEEEEc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFEC-IG-N---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~-~g-~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
...+.+.+. .+|+|+-. .- . ...+..+++.|+++ |++|..-
T Consensus 221 ~~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~ 266 (328)
T d1nw3a_ 221 SEEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK 266 (328)
T ss_dssp SHHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred ccccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence 233333322 26787732 11 1 23467788889997 9998753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.24 E-value=0.012 Score=49.22 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=66.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce-EeCCCCCCchHHHHHHHh
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~-v~~~~~~~~~~~~~i~~~ 260 (379)
++......+.++||=+|+|. |..+..+++ .|+ +|++++.+++-.+.+++. +... ++..+ +.++
T Consensus 33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d---------~~~l 100 (251)
T d1wzna1 33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD---------VLEI 100 (251)
T ss_dssp HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC---------GGGC
T ss_pred HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh---------hhhc
Confidence 45555677888999999974 777777776 588 899999999877777653 3222 22221 1222
Q ss_pred cCC-CccEEEEcCCC---------HHHHHHHHHHhccCCceEEE
Q 016978 261 TDG-GVDYSFECIGN---------VSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 261 ~~~-g~d~vid~~g~---------~~~~~~~~~~l~~~~G~iv~ 294 (379)
... .||+|+-..+. ..+++.+.+.|+++ |.++.
T Consensus 101 ~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii 143 (251)
T d1wzna1 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT 143 (251)
T ss_dssp CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred ccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence 223 79998865332 14678899999997 98875
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.0087 Score=50.91 Aligned_cols=80 Identities=10% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH---h-cCCceEe--CCCCCCchHHHHHHHhc--
Q 016978 193 EPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK---N-FGVTEFV--NPKDHDKPIQQVLVDLT-- 261 (379)
Q Consensus 193 ~~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~---~-lg~~~v~--~~~~~~~~~~~~i~~~~-- 261 (379)
-+|+++||+|+ | ++|.+.++.+...|+ +|+.++++++..+.++ + .+...++ +..+ +.+..+.+.+..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK-EEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc-hhhHHHHHHHHHHH
Confidence 46999999986 5 699999999999999 8999988865333332 2 2222222 2222 123333332222
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+.+|+++.+.|.
T Consensus 81 ~g~id~lV~nag~ 93 (274)
T d2pd4a1 81 LGSLDFIVHSVAF 93 (274)
T ss_dssp TSCEEEEEECCCC
T ss_pred cCCCCeEEeeccc
Confidence 2479999988775
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.017 Score=51.84 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=69.8
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC---------------CceE-eCCCCC
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG---------------VTEF-VNPKDH 249 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg---------------~~~v-~~~~~~ 249 (379)
+++..++++|++||=+|+| +|..+.++|+..|+.++++++.++...+.+++.. .... +..+..
T Consensus 208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 5678889999999988987 7999999999999878999999988777665321 1111 111111
Q ss_pred CchHHHHHHHhcCCCccEEEEc-C-CC---HHHHHHHHHHhccCCceEEEEc
Q 016978 250 DKPIQQVLVDLTDGGVDYSFEC-I-GN---VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~-~-g~---~~~~~~~~~~l~~~~G~iv~~g 296 (379)
..+...... ..+|+|+-. . -. ...+..+++.|++| |++|..-
T Consensus 287 ~~~~~d~~~----~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~ 333 (406)
T d1u2za_ 287 DNNRVAELI----PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK 333 (406)
T ss_dssp TCHHHHHHG----GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred hcccccccc----ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence 122222211 147787742 1 11 34577888899997 9998753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=96.09 E-value=0.017 Score=48.21 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCC------eEEEEcCChhHHHHHH----hcCCceE---eCCCCCCchHHH---HHHH
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGAS------RVIGIDIDPKKFDRAK----NFGVTEF---VNPKDHDKPIQQ---VLVD 259 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~------~vi~v~~~~~~~~~~~----~lg~~~v---~~~~~~~~~~~~---~i~~ 259 (379)
.|||+|+ +++|.+.+..+...|++ .|+.+++++++++.+. +.|.... .|..+ ..+..+ .+.+
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~-~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD-MADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS-HHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHH
Confidence 4688888 99999999988888983 2888889988766443 3454332 23333 122222 3333
Q ss_pred hcCCCccEEEEcCCCH-------------------------HHHHHHHHHhcc-CCceEEEEccCC
Q 016978 260 LTDGGVDYSFECIGNV-------------------------SVMRAALECCHK-GWGTSVIVGVAA 299 (379)
Q Consensus 260 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~iv~~g~~~ 299 (379)
. .+.+|++++++|.. ...+.++..|++ ++|+++.++...
T Consensus 82 ~-~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~ 146 (240)
T d2bd0a1 82 R-YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVA 146 (240)
T ss_dssp H-TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred H-cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechh
Confidence 2 24799999998851 124555555533 238999887543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.04 E-value=0.046 Score=42.24 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=60.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+++.++... .+..+.++ ..|+||-|...+.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~-------~~~~e~~~-----~~d~ii~~v~~~~ 68 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETA-------STAKAIAE-----QCDVIITMLPNSP 68 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-------SSHHHHHH-----HCSEEEECCSSHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhc-------ccHHHHHh-----CCCeEEEEcCCHH
Confidence 57889999999998888888899 89999999999999988876421 12222222 3688888877655
Q ss_pred HHHHHH-------HHhccCCceEEEEcc
Q 016978 277 VMRAAL-------ECCHKGWGTSVIVGV 297 (379)
Q Consensus 277 ~~~~~~-------~~l~~~~G~iv~~g~ 297 (379)
.....+ ..+.++ ..++.++.
T Consensus 69 ~v~~v~~~~~~~~~~~~~g-~iiid~sT 95 (161)
T d1vpda2 69 HVKEVALGENGIIEGAKPG-TVLIDMSS 95 (161)
T ss_dssp HHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred HHHHHHhCCcchhhccCCC-CEEEECCC
Confidence 554432 334453 45555544
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.01 E-value=0.0092 Score=49.23 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHH---cCC---CeEEEEcCChhHHHHHHhc---------CCce--EeCCCCCCchH
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKA---AGA---SRVIGIDIDPKKFDRAKNF---------GVTE--FVNPKDHDKPI 253 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~---~g~---~~vi~v~~~~~~~~~~~~l---------g~~~--v~~~~~~~~~~ 253 (379)
.+++|++||.+|+| .|+.++.+++. .|. .+|++++.+++-.+.+++. +.+. ++..+.
T Consensus 77 ~l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~----- 150 (223)
T d1r18a_ 77 HLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG----- 150 (223)
T ss_dssp TCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG-----
T ss_pred ccCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc-----
Confidence 68999999999874 35555555554 442 2799999988766655431 2111 222111
Q ss_pred HHHHHHhc-CCCccEEEEcCCCHHHHHHHHHHhccCCceEEE-Ec
Q 016978 254 QQVLVDLT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVI-VG 296 (379)
Q Consensus 254 ~~~i~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~-~g 296 (379)
..... .+.||.|+-+.+-++.-...++.|+++ |++|. +|
T Consensus 151 ---~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~pvg 191 (223)
T d1r18a_ 151 ---RKGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVG 191 (223)
T ss_dssp ---GGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred ---ccccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEEEe
Confidence 00111 237999887766655557788899997 99986 44
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.99 E-value=0.0012 Score=55.88 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=51.3
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC----ceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV----TEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~----~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
++||+|+ +++|++.+..+...|+ +|+.++++.++.+.+++.+. -.+.+..+ ...+.+.+.+.. +++|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~-~~~~~~~~~~~~-G~iDiLVnN 78 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE-PAELIEAVTSAY-GQVDVLVSN 78 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS-HHHHHHHHHHHH-SCCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH-HHHHHHHHHHHc-CCCCEEEEC
Confidence 6889988 9999999999999999 89999988887776654322 22322222 133444444433 479999987
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
+|.
T Consensus 79 Ag~ 81 (252)
T d1zmta1 79 DIF 81 (252)
T ss_dssp CCC
T ss_pred CcC
Confidence 653
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.93 E-value=0.0084 Score=48.53 Aligned_cols=49 Identities=37% Similarity=0.450 Sum_probs=44.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE 242 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~ 242 (379)
-.|.+|+|.|.|.+|..+++++...|+ +|++++.+.++.+....+|.+.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~ 73 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA 73 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhcccc
Confidence 478999999999999999999999999 9999999999999888888753
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=95.88 E-value=0.048 Score=41.67 Aligned_cols=82 Identities=24% Similarity=0.236 Sum_probs=55.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|.++|+|.+|.+.+.-+...|..++++.++++++.+.+++ +|.. +.+..+ . . ...|+||=|+-.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~---~-------v--~~~Div~lavkP- 67 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP---E-------L--HSDDVLILAVKP- 67 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC---C-------C--CTTSEEEECSCH-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc---c-------c--cccceEEEecCH-
Confidence 58889999999987774444453499999999998877765 5654 332222 0 1 147888888764
Q ss_pred HHHHHHHHHhccCCceEE
Q 016978 276 SVMRAALECCHKGWGTSV 293 (379)
Q Consensus 276 ~~~~~~~~~l~~~~G~iv 293 (379)
..+...++-+++. +.++
T Consensus 68 ~~~~~v~~~l~~~-~~~v 84 (152)
T d1yqga2 68 QDMEAACKNIRTN-GALV 84 (152)
T ss_dssp HHHHHHHTTCCCT-TCEE
T ss_pred HHHHHhHHHHhhc-ccEE
Confidence 5577777777764 5554
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=95.82 E-value=0.013 Score=49.62 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHH-H-HHHhcCCceE---eCCCCC--CchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKF-D-RAKNFGVTEF---VNPKDH--DKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~-~-~~~~lg~~~v---~~~~~~--~~~~~~~i~~~~ 261 (379)
+-.|+++||+|+ | ++|.+.++-+...|+ +|+.+.+++++. + ..++++.... .|..+. ..+..+.+.+..
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence 457899999985 4 599999999999999 899888877664 3 3344554332 222220 123444444433
Q ss_pred C--CCccEEEEcCCC
Q 016978 262 D--GGVDYSFECIGN 274 (379)
Q Consensus 262 ~--~g~d~vid~~g~ 274 (379)
. +..|++++++|.
T Consensus 82 ~~~~~ld~~i~~ag~ 96 (268)
T d2h7ma1 82 GAGNKLDGVVHSIGF 96 (268)
T ss_dssp CTTCCEEEEEECCCC
T ss_pred ccCCCcceeeecccc
Confidence 2 278999998873
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.82 E-value=0.0084 Score=50.30 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=48.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHH---HcCCCeEEEEcCChhHHHHHHh---cCCce-E--eCCCCCCch---HHHHHHHhcC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAK---AAGASRVIGIDIDPKKFDRAKN---FGVTE-F--VNPKDHDKP---IQQVLVDLTD 262 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~---~~g~~~vi~v~~~~~~~~~~~~---lg~~~-v--~~~~~~~~~---~~~~i~~~~~ 262 (379)
++|||+|+ +++|++.++.+. ..|+ +|+.+++++++.+.+++ .+... + .|..+ ..+ +.+.++....
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~-~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN-FDAYDKLVADIEGVTK 80 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC-GGGHHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc-HHHHHHHHhhhHHHhh
Confidence 68999998 999999876554 3577 89999999887655443 22222 2 23333 122 3333433333
Q ss_pred -CCccEEEEcCCC
Q 016978 263 -GGVDYSFECIGN 274 (379)
Q Consensus 263 -~g~d~vid~~g~ 274 (379)
+.+|++++++|.
T Consensus 81 ~~~iDiLvnNAg~ 93 (248)
T d1snya_ 81 DQGLNVLFNNAGI 93 (248)
T ss_dssp GGCCSEEEECCCC
T ss_pred cCCcceEEeeccc
Confidence 379999998774
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.79 E-value=0.043 Score=45.10 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=68.6
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhc----CCceEeCCCCCCchHHHHHHHhc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNF----GVTEFVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~l----g~~~v~~~~~~~~~~~~~i~~~~ 261 (379)
++...++||++||=+|+| .|..+..+|+..|- .+|++++.+++..+.+++. +....+..+..... .. ...
T Consensus 66 l~~l~i~pG~~VLDlGaG-sG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~---~~-~~~ 140 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIA-SGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE---EY-RAL 140 (227)
T ss_dssp CCCCCCCTTCEEEEETTT-STTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG---GG-TTT
T ss_pred ccccccCCCCEEEEeccC-CCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc---cc-ccc
Confidence 355679999999999986 48888899998874 4899999999887776643 22222222221111 11 111
Q ss_pred CCCccEEEEcCCC----HHHHHHHHHHhccCCceEEEE
Q 016978 262 DGGVDYSFECIGN----VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ~~g~d~vid~~g~----~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+|+++..... ...+..+.+.|+++ |.+++.
T Consensus 141 ~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~ 177 (227)
T d1g8aa_ 141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA 177 (227)
T ss_dssp CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence 2368888865443 23578888999997 988765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.75 E-value=0.048 Score=44.93 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=65.8
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC----ceEeCCCCCCchHHHHHHHhcC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV----TEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~----~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
++...++||++||=+|+| .|..+..+|+.....+|++++.+++-.+.+++.-. ...+..+..... ....
T Consensus 67 l~~l~ikpG~~VLDlGcG-sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~------~~~~ 139 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGAS-AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ------EYAN 139 (230)
T ss_dssp CCCCCCCTTCEEEEESCC-SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG------GGTT
T ss_pred HHhCCCCCCCEEEEeCEE-cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc------cccc
Confidence 355679999999999985 47777888887544599999999988777765422 222222221111 1111
Q ss_pred C--CccEEEEcCCC----HHHHHHHHHHhccCCceEEEE
Q 016978 263 G--GVDYSFECIGN----VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 263 ~--g~d~vid~~g~----~~~~~~~~~~l~~~~G~iv~~ 295 (379)
. .+|+++..... ..++..+...|+++ |.++..
T Consensus 140 ~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~ 177 (230)
T d1g8sa_ 140 IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA 177 (230)
T ss_dssp TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred ccceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence 2 45666665443 34578888899997 988765
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.70 E-value=0.028 Score=45.65 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=65.9
Q ss_pred ccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhcCCC
Q 016978 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 189 ~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~~~g 264 (379)
...++||++||=+|+| .|..+..+++..+..+|++++.+++..+.+++ .+-...+..+...... .......
T Consensus 51 ~l~lkpg~~VLDlGcG-~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~----~~~~~~~ 125 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAA-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWK----YSGIVEK 125 (209)
T ss_dssp CCCCCSSCEEEEETCT-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGG----TTTTCCC
T ss_pred cCCCCCCCEEEEeCCc-CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccc----cccccce
Confidence 4579999999999985 36677788888875699999999987776643 3332233222211111 0111125
Q ss_pred ccEEEEcCCC----HHHHHHHHHHhccCCceEEEE
Q 016978 265 VDYSFECIGN----VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 265 ~d~vid~~g~----~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+|+++..... ...+..+.+.|+++ |.++..
T Consensus 126 vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 159 (209)
T d1nt2a_ 126 VDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM 159 (209)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEEecccChhhHHHHHHHHHHHhccC-CeEEEE
Confidence 7788765443 23578888999997 998766
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0049 Score=43.28 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=31.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|++|+|+|.|..|+++++++...|+ +|++.+...
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 57899999999999999999999999 899998754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.03 Score=46.92 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEeCCCCC-CchHHHHHHHhc--
Q 016978 192 VEPGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFVNPKDH-DKPIQQVLVDLT-- 261 (379)
Q Consensus 192 ~~~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~-~~~~~~~i~~~~-- 261 (379)
.-+|+++||+|+ | ++|.+.+..+...|+ +|+.++++++..+.+. ..+....+..+.. ..+.........
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 347899999987 6 688999999999999 8998888876555443 3444443332221 122222333322
Q ss_pred CCCccEEEEcCCC
Q 016978 262 DGGVDYSFECIGN 274 (379)
Q Consensus 262 ~~g~d~vid~~g~ 274 (379)
.+..|+++++++.
T Consensus 81 ~~~~d~~v~~a~~ 93 (258)
T d1qsga_ 81 WPKFDGFVHSIGF 93 (258)
T ss_dssp CSSEEEEEECCCC
T ss_pred ccccceEEEeecc
Confidence 2378999987654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0093 Score=49.97 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=39.8
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHhcCCce
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDR-AKNFGVTE 242 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~-~~~lg~~~ 242 (379)
+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. +++++...
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~ 53 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNC 53 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCCc
Confidence 6899999988 9999999999999999 89999998876654 44565543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=95.48 E-value=0.034 Score=42.78 Aligned_cols=93 Identities=29% Similarity=0.377 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
.-.|++++|.|=|-+|.-.++-++.+|+ +|++++.++-+.-.+.--|. .+. ...+.+ ...|+++-+
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~-------~~~~a~-----~~aDi~vTa 85 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVV-------TLDEIV-----DKGDFFITC 85 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EEC-------CHHHHT-----TTCSEEEEC
T ss_pred eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccC-------chhHcc-----ccCcEEEEc
Confidence 4689999999999999999999999999 99999999866433332232 222 121121 247999999
Q ss_pred CCCHHH-HHHHHHHhccCCceEEEEccCC
Q 016978 272 IGNVSV-MRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 272 ~g~~~~-~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
+|+.+. -.+-+..|+++ ..+...|-..
T Consensus 86 TGn~~vI~~~h~~~MKdg-aIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVDVIKLEHLLKMKNN-AVVGNIGHFD 113 (163)
T ss_dssp CSSSSSBCHHHHTTCCTT-CEEEECSSTT
T ss_pred CCCCccccHHHHHHhhCC-eEEEeccccc
Confidence 999664 35667888885 7777776543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.44 E-value=0.062 Score=41.33 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=54.2
Q ss_pred CEEEEEcCChHHH-HHHHHHHHcCCCeEEEE-cCCh--hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcC-CCccEEEE
Q 016978 196 SIVAVFGLGTVGL-AVAEGAKAAGASRVIGI-DIDP--KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD-GGVDYSFE 270 (379)
Q Consensus 196 ~~VlI~Gag~vG~-~a~~la~~~g~~~vi~v-~~~~--~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~-~g~d~vid 270 (379)
=+|.|+|+|.+|. ..+++++......++++ +++. ....+++++|..... . ..+.+.+... .++|+||+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~------~-~~d~l~~~~~~~~iDiVf~ 77 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------A-GVEGLIKLPEFADIDFVFD 77 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------S-HHHHHHHSGGGGGEEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc------c-ceeeeeecccccccCEEEE
Confidence 3788999999987 56778776654366666 4443 345678888875432 1 2233333222 37999999
Q ss_pred cCCCHHHHHHH--HHHhccCCceEEE
Q 016978 271 CIGNVSVMRAA--LECCHKGWGTSVI 294 (379)
Q Consensus 271 ~~g~~~~~~~~--~~~l~~~~G~iv~ 294 (379)
++......... ...+.. |.+|.
T Consensus 78 ATpag~h~~~~~~~~aa~~--G~~VI 101 (157)
T d1nvmb1 78 ATSASAHVQNEALLRQAKP--GIRLI 101 (157)
T ss_dssp CSCHHHHHHHHHHHHHHCT--TCEEE
T ss_pred cCCchhHHHhHHHHHHHHc--CCEEE
Confidence 98764434433 333544 55443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.31 E-value=0.02 Score=48.25 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---eEeCCCCCCchHHHHHHHhcCC-
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---EFVNPKDHDKPIQQVLVDLTDG- 263 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~v~~~~~~~~~~~~~i~~~~~~- 263 (379)
+++|++||-.|+| +|.+++.+|+. |+.+|++++.+++..+.+++ .|.+ .++..+. +++...
T Consensus 105 ~~~g~~VlD~~aG-~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---------~~~~~~~ 173 (260)
T d2frna1 105 AKPDELVVDMFAG-IGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---------RDFPGEN 173 (260)
T ss_dssp CCTTCEEEETTCT-TTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---------TTCCCCS
T ss_pred cCCccEEEECcce-EcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---------HHhccCC
Confidence 6899999998764 34455566665 54499999999998877763 3432 2333322 122233
Q ss_pred CccEEE-Ec-CCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 264 GVDYSF-EC-IGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 264 g~d~vi-d~-~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+|.|+ +. ..+.+.+..++..++++ |.+..+..
T Consensus 174 ~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~ 208 (260)
T d2frna1 174 IADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNT 208 (260)
T ss_dssp CEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred CCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEec
Confidence 689665 32 34456788999999996 88866543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.28 E-value=0.036 Score=44.53 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
.|++|.|+|.|.+|...+++++.+|+ +|++.+...+..... .+.. . .++.+.+.+ .|+|+-++.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~----~----~~l~~~l~~-----sDii~~~~p 105 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY----V----DSLDDLYKQ-----ADVISLHVP 105 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB----C----SCHHHHHHH-----CSEEEECSC
T ss_pred cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee----e----ccccccccc-----cccccccCC
Confidence 47999999999999999999999999 999998665432221 1211 1 234334433 687776644
Q ss_pred C-H---HHH-HHHHHHhccCCceEEEE
Q 016978 274 N-V---SVM-RAALECCHKGWGTSVIV 295 (379)
Q Consensus 274 ~-~---~~~-~~~~~~l~~~~G~iv~~ 295 (379)
- + ..+ ...+..|+++ ..+|.+
T Consensus 106 lt~~T~~li~~~~l~~mk~~-a~lIN~ 131 (197)
T d1j4aa1 106 DVPANVHMINDESIAKMKQD-VVIVNV 131 (197)
T ss_dssp CCGGGTTCBSHHHHHHSCTT-EEEEEC
T ss_pred ccccccccccHHHHhhhCCc-cEEEec
Confidence 2 1 112 4556777775 666655
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.05 Score=46.41 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=44.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEE---EcCChhHH----HHHHhc---CCce-E--eCCCCCCchHHHHHHHhcC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG---IDIDPKKF----DRAKNF---GVTE-F--VNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~---v~~~~~~~----~~~~~l---g~~~-v--~~~~~~~~~~~~~i~~~~~ 262 (379)
.|||+|+ +++|.+.+..+...|+ +++. +.++.++. +.++++ +... . .|..+ ..+....+.+...
T Consensus 4 VvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 4 VVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD-SKSVAAARERVTE 81 (285)
T ss_dssp EEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC-HHHHHHHHHTCTT
T ss_pred EEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc-hHhhhhhhhhccc
Confidence 4567788 9999999998888998 4333 33333322 233333 2222 1 23333 2344444545445
Q ss_pred CCccEEEEcCCC
Q 016978 263 GGVDYSFECIGN 274 (379)
Q Consensus 263 ~g~d~vid~~g~ 274 (379)
+..|+++++.|.
T Consensus 82 g~idilvnnag~ 93 (285)
T d1jtva_ 82 GRVDVLVCNAGL 93 (285)
T ss_dssp SCCSEEEECCCC
T ss_pred cchhhhhhcccc
Confidence 589999998875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.23 E-value=0.037 Score=44.96 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-EeCCCCCCchHHHHHHHhcCCCcc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-FVNPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d 266 (379)
++++++||=+|+|. |..+..+++ .|+ +|++++.+++-.+.+++ .+... .+..+. .++ ...++.+|
T Consensus 35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~--~~l-----~~~~~~fD 104 (226)
T d1ve3a1 35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA--RKL-----SFEDKTFD 104 (226)
T ss_dssp CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT--TSC-----CSCTTCEE
T ss_pred cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc--ccc-----cccCcCce
Confidence 57889999999863 777778876 477 89999999988777664 33222 222211 110 12234799
Q ss_pred EEEEcCCC--------HHHHHHHHHHhccCCceEEEE
Q 016978 267 YSFECIGN--------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 267 ~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
+|+-...- ..+++.+.+.|+++ |+++..
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~ 140 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY 140 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence 98853221 23588899999997 998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.036 Score=47.97 Aligned_cols=98 Identities=24% Similarity=0.353 Sum_probs=56.0
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH---HHHHhcCCce---EeCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF---DRAKNFGVTE---FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~---~~~~~lg~~~---v~~~~~~~~~~~~~i~~ 259 (379)
+.+.....+|++||-+|+| .|.+++.+|+ .|+++|++++.++.-. +..++.+... ++..+. .++ .
T Consensus 27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~--~~l-----~ 97 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI--EEV-----H 97 (311)
T ss_dssp HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT--TTS-----C
T ss_pred HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH--HHh-----c
Confidence 4444566789999999986 5666666665 5887999999887533 2223333321 222211 111 1
Q ss_pred hcCCCccEEEE-cCCC--------HHHHHHHHHHhccCCceEE
Q 016978 260 LTDGGVDYSFE-CIGN--------VSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 260 ~~~~g~d~vid-~~g~--------~~~~~~~~~~l~~~~G~iv 293 (379)
.....+|+|+- ..+. +..+...-+.|+++ |+++
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii 139 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY 139 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence 11237999884 2222 12233344578996 8876
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.15 E-value=0.036 Score=45.15 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGAS-RVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~-~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
.+|||+|+ |.+|..++..+...|.+ +|+.+.+++++.+.+.. +...+. +..+ .. .+.+.. .++|.|++++
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~--~~---~~~~~~-~~~d~vi~~a 76 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD--AD---SINPAF-QGIDALVILT 76 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS--HH---HHHHHH-TTCSEEEECC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc--cc---cccccc-ccceeeEEEE
Confidence 68999988 99999999999999963 56667788877655432 333222 2222 21 222222 2589999887
Q ss_pred CC
Q 016978 273 GN 274 (379)
Q Consensus 273 g~ 274 (379)
+.
T Consensus 77 ~~ 78 (252)
T d2q46a1 77 SA 78 (252)
T ss_dssp CC
T ss_pred ee
Confidence 53
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.05 E-value=0.14 Score=39.44 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=39.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT 241 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~ 241 (379)
.+|-++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.+..
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~ 46 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS 46 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence 368899999999988887777899 899999999999988888764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.00 E-value=0.026 Score=49.26 Aligned_cols=102 Identities=27% Similarity=0.281 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc-CC-Cc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-DG-GV 265 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~-~~-g~ 265 (379)
+++|++||=.++| .|..++.+| ..|+.+|++++.+++..+.+++ .|...-+.... .+..+.+.... .+ .|
T Consensus 143 ~~~g~~VLDl~~g-~G~~si~~a-~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~--~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGDRVLDVFTY-TGGFAIHAA-IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV--GSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTCEEEETTCT-TTHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHTTCCE
T ss_pred cCCCCeeecccCc-ccchhhhhh-hcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee--chhhhhhHHHHhccCCC
Confidence 6789999987552 233333444 3477799999999998887764 45422111111 23333333322 23 89
Q ss_pred cEEEE-cCC--C------------HHHHHHHHHHhccCCceEEEEccC
Q 016978 266 DYSFE-CIG--N------------VSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 266 d~vid-~~g--~------------~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
|+|+- .-. . ..++..++.+++++ |.++.+...
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence 98874 211 1 23677888899997 999988553
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.007 Score=47.15 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|+|+|+|.+|.+.+..+...|. .|..+++++++.+.....+.+.. ..... ..+..+.+ +.+|++|-++...
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~D~iii~vka~ 74 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESL-TANDPDFL-----ATSDLLLVTLKAW 74 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEE-EESCHHHH-----HTCSEEEECSCGG
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCcccccccc-ccchhhhh-----cccceEEEeeccc
Confidence 68999999999998888888999 89999888765433332222110 00000 01111111 2589999998874
Q ss_pred H---HHHHHHHHhccCCceEEEEc
Q 016978 276 S---VMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ~---~~~~~~~~l~~~~G~iv~~g 296 (379)
+ .++.+...+.++ ..++.+.
T Consensus 75 ~~~~~~~~l~~~~~~~-~~Iv~~q 97 (167)
T d1ks9a2 75 QVSDAVKSLASTLPVT-TPILLIH 97 (167)
T ss_dssp GHHHHHHHHHTTSCTT-SCEEEEC
T ss_pred chHHHHHhhccccCcc-cEEeecc
Confidence 4 233333444553 5566653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.81 E-value=0.049 Score=44.73 Aligned_cols=47 Identities=28% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh-cCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN-FGV 240 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~-lg~ 240 (379)
-.|.+|+|.|.|.+|..+++++..+|+ ++++++.+..+.+.+.. .|.
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~ 84 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGA 84 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCC
Confidence 478999999999999999999999999 99999998888765553 554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.75 E-value=0.078 Score=41.42 Aligned_cols=99 Identities=22% Similarity=0.235 Sum_probs=63.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcC--ChhHHHHHHhcCCceEeCCCCCCchHHH-------HHHHhcCCCcc
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDI--DPKKFDRAKNFGVTEFVNPKDHDKPIQQ-------VLVDLTDGGVD 266 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~--~~~~~~~~~~lg~~~v~~~~~~~~~~~~-------~i~~~~~~g~d 266 (379)
+|.|.|.|-+|...++.+.... . .++++.. .......+..++.+......+....+.+ .+.+. ..++|
T Consensus 4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vD 81 (172)
T d2czca2 4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL-LEKVD 81 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH-HTTCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhh-hccCC
Confidence 6889999999998888776544 4 6666632 2344556666776544322210001100 01111 12699
Q ss_pred EEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 267 YSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 267 ~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+|+||+|.-.....+-..+..+ -+.|.++.+
T Consensus 82 vViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~ 112 (172)
T d2czca2 82 IIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE 112 (172)
T ss_dssp EEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred EEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 9999999977778888888886 888888764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.73 E-value=0.029 Score=49.15 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=39.3
Q ss_pred hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
+..-+.+|++|||+|+ |-+|..++..+...|+ +|+++.++.++.+.++
T Consensus 4 ~~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 4 DNAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ 52 (342)
T ss_dssp TTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred CCCCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence 3445778999999988 9999999888888899 8999888887766554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.66 E-value=0.037 Score=47.98 Aligned_cols=94 Identities=24% Similarity=0.279 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH---HHHHhcCCce---EeCCCCCCchHHHHHHHhcCC
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF---DRAKNFGVTE---FVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~---~~~~~lg~~~---v~~~~~~~~~~~~~i~~~~~~ 263 (379)
..+.+|++||-+|+|. |.+++.+|+ .|+++|++++.++.-. +.++..+... ++..+. .++ ....+
T Consensus 29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~--~~~-----~~~~~ 99 (316)
T d1oria_ 29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV--EEV-----ELPVE 99 (316)
T ss_dssp HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT--TTC-----CCSSS
T ss_pred cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH--HHc-----ccccc
Confidence 3456899999999874 666666665 6887899999876422 2223333321 222221 111 11123
Q ss_pred CccEEEE-cCCC--------HHHHHHHHHHhccCCceEE
Q 016978 264 GVDYSFE-CIGN--------VSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 264 g~d~vid-~~g~--------~~~~~~~~~~l~~~~G~iv 293 (379)
.+|+|+. ..+. +..+...-+.|+++ |+++
T Consensus 100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii 137 (316)
T d1oria_ 100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF 137 (316)
T ss_dssp CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence 7999874 2222 34456667889996 9876
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.60 E-value=0.014 Score=46.44 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
+++|+|+|+|+.|+.++..+...|++.|+++++++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 689999999999999999999999955888877654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.022 Score=41.19 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=32.6
Q ss_pred CCCC-CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 192 VEPG-SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 192 ~~~g-~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
+.|+ .+|.|+|+|.+|.+.++-|+.+|+ ++++.+.+++
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~ 45 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD 45 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 3444 579999999999999999999999 8999987655
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=94.50 E-value=0.056 Score=46.67 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=46.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC--Ch---hHHHHHHhcCCceEeCCCCC-CchHHHHHHHhcCCCccEE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DP---KKFDRAKNFGVTEFVNPKDH-DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~--~~---~~~~~~~~lg~~~v~~~~~~-~~~~~~~i~~~~~~g~d~v 268 (379)
.+|||+|+ |-+|..++..+...|+ +|+++++ .. ++.+.+...+--.++..+-. ...+.+.+... ++|+|
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~---~~d~V 76 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY---MPDSC 76 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH---CCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc---CCceE
Confidence 37999988 9999999998888999 8999863 11 23334444332233322211 12333333322 68999
Q ss_pred EEcCCC
Q 016978 269 FECIGN 274 (379)
Q Consensus 269 id~~g~ 274 (379)
|+++..
T Consensus 77 ih~aa~ 82 (338)
T d1orra_ 77 FHLAGQ 82 (338)
T ss_dssp EECCCC
T ss_pred Eeeccc
Confidence 998764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.48 E-value=0.12 Score=42.25 Aligned_cols=101 Identities=16% Similarity=0.301 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHh-----c
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDL-----T 261 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~-----~ 261 (379)
...-++||-+|.+ +|..++.+|+.+.- .+++.++.+++..+.+++ .|...-+.... .+..+.+.++ .
T Consensus 57 ~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~--g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 57 LINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE--GPALPVLDEMIKDEKN 133 (227)
T ss_dssp HHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE--SCHHHHHHHHHHCGGG
T ss_pred hcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee--hHHHHHHHHHHhcccc
Confidence 3456899999884 68889999998852 399999999988777764 45543222211 2333344333 2
Q ss_pred CCCccEEE-EcCCC--HHHHHHHHHHhccCCceEEEEc
Q 016978 262 DGGVDYSF-ECIGN--VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 ~~g~d~vi-d~~g~--~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+.||.|| |+--. ...+..++..++++ |.++.=.
T Consensus 134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DN 170 (227)
T d1susa1 134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN 170 (227)
T ss_dssp TTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEET
T ss_pred CCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEcc
Confidence 34799988 43322 45688999999996 8877543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=94.47 E-value=0.062 Score=44.92 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
+.||+|+ +++|.+.+..+...|+ +|+.++++.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence 4578888 9999999999999999 89999887554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.37 E-value=0.27 Score=37.21 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=63.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHc--CCCeEEEEcCChhH---HHHHHhcCCceEeCCCCCCchHHH--------------
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAA--GASRVIGIDIDPKK---FDRAKNFGVTEFVNPKDHDKPIQQ-------------- 255 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~--g~~~vi~v~~~~~~---~~~~~~lg~~~v~~~~~~~~~~~~-------------- 255 (379)
++|.|+|+ |.+|.-++.+.+.. .+ +|+++.....- .+.++++.+..++..++ .....
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~--~~~~~l~~~~~~~~~~v~~ 79 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP--SLYNDLKEALAGSSVEAAA 79 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG--GGHHHHHHHTTTCSSEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH--HHHHHHHHHhhhccccccc
Confidence 78999999 99999999999976 36 78877665432 35556788888765543 11111
Q ss_pred ---HHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 256 ---VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 256 ---~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+.....+|+++.++.+..-+.-.+.+++.+ .-+.+.+
T Consensus 80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g--k~iaLAN 122 (150)
T d1r0ka2 80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG--KTVALAN 122 (150)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT--SEEEECC
T ss_pred CccchheecccccceeeeecCchhHHHHHHHHHhcC--CEEEEec
Confidence 111121225788888876666677777777773 4444433
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.31 E-value=0.069 Score=39.06 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=46.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFE 270 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid 270 (379)
++++++|+|+|+|.+|.-++..++.+|. +|..+.+++.=+ . ...+....+.+++.... |+++..+
T Consensus 27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~l------~-------~~~~~~~~~~~~~~l~~~GV~i~~~ 92 (121)
T d1d7ya2 27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRLM------S-------RAAPATLADFVARYHAAQGVDLRFE 92 (121)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTT------T-------TTSCHHHHHHHHHHHHTTTCEEEES
T ss_pred hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccccc------c-------ccCCHHHHHHHHHHHHHCCcEEEeC
Confidence 5678999999999999999999999999 899997765411 0 00124555555554433 7777765
Q ss_pred c
Q 016978 271 C 271 (379)
Q Consensus 271 ~ 271 (379)
.
T Consensus 93 ~ 93 (121)
T d1d7ya2 93 R 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.27 E-value=0.17 Score=39.45 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=37.9
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
.+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~ 46 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA 46 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence 468899999999998888888899 89999999999888766544
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.27 E-value=0.23 Score=37.50 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=60.8
Q ss_pred CEEEEEc-CChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC--CccEEEEcC
Q 016978 196 SIVAVFG-LGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG--GVDYSFECI 272 (379)
Q Consensus 196 ~~VlI~G-ag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~--g~d~vid~~ 272 (379)
++|.|+| .|.+|...+..++..|+ .|.+.+++++........+++.++.... .....+.+.+..+. .=.+++|++
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~~~iiiD~~ 87 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP-INLTLETIERLKPYLTENMLLADLT 87 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC-GGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc-hhhheeeeecccccccCCceEEEec
Confidence 6899999 69999999999999999 8999998877655555567777665433 23344444444332 224788987
Q ss_pred CCHHHHHHHHHHhccCCceEE
Q 016978 273 GNVSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv 293 (379)
+....+...+....+ .+++
T Consensus 88 Svk~~~~~~~~~~~~--~~~v 106 (152)
T d2pv7a2 88 SVKREPLAKMLEVHT--GAVL 106 (152)
T ss_dssp SCCHHHHHHHHHHCS--SEEE
T ss_pred ccCHHHHHHHHHHcc--CCEE
Confidence 753333333333333 3444
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.23 E-value=0.043 Score=40.05 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=35.8
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.....++++|+|+|+|.+|+-.++.++.+|. +|..+.+.+
T Consensus 14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence 344566789999999999999999999999998 888887654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=94.23 E-value=0.009 Score=48.16 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
+.+||=+|+| .|..+..+++ .|+ +|++++.+++-++.+++ .+.+. +...+- ..+ ...+.||+|
T Consensus 31 ~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~~~------~~~~~fD~I 99 (198)
T d2i6ga1 31 PGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--NTL------TFDGEYDFI 99 (198)
T ss_dssp SCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--TTC------CCCCCEEEE
T ss_pred CCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheec--ccc------cccccccEE
Confidence 3489999986 6777777776 588 89999999987776653 44442 211111 000 112379999
Q ss_pred EEcCCC--------HHHHHHHHHHhccCCceEEEEcc
Q 016978 269 FECIGN--------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 269 id~~g~--------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+....- ...++.+.++|+++ |.++....
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 135 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA 135 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 853211 24678888899997 99887644
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.20 E-value=0.046 Score=47.79 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
+|++|||+|+ |-+|..+++.+...|+ .|+++++.+.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~ 43 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP 43 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence 4799999988 9999999999999999 8999988664
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.18 E-value=0.016 Score=49.78 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCceEeC-CCCCCchHHHHHHHhcCC-
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTEFVN-PKDHDKPIQQVLVDLTDG- 263 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~v~~-~~~~~~~~~~~i~~~~~~- 263 (379)
.+.+++++||=+|+| .|..++.||+. |+ +|++++.+++-++.+++. +....+. ..-...++...-......
T Consensus 52 l~~~~~~~vLD~GcG-~G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACG-TGVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 128 (292)
T ss_dssp HHHTTCCEEEESSCT-TSHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred hhhcCCCEEEEecCC-CcHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence 344567899998885 46777788775 88 899999999887777542 2111000 000001111111223333
Q ss_pred CccEEEEcCCC--------------HHHHHHHHHHhccCCceEEE
Q 016978 264 GVDYSFECIGN--------------VSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 264 g~d~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~ 294 (379)
.+|.|+..... ..+++.+.+.|+|+ |.++.
T Consensus 129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~ 172 (292)
T d1xvaa_ 129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI 172 (292)
T ss_dssp CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence 89998864321 13689999999997 99875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.12 E-value=0.12 Score=41.08 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=61.9
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc----eEeCCCCCCchHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT----EFVNPKDHDKPIQQVL 257 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~----~v~~~~~~~~~~~~~i 257 (379)
|.+.....++++||=+|+| .|..++.+++ .+. +|++++.+++..+.+++ .+.. .++..+. .
T Consensus 44 Li~~l~~~~~~~VLDiGcG-~G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--------~ 112 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCG-YGVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--------Y 112 (194)
T ss_dssp HHHHCCCCTTCEEEEETCT-TSHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--------T
T ss_pred HHHhCCcCCCCeEEEEeec-CChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--------h
Confidence 4566678899999999874 3555566665 455 89999999988777763 2321 1222111 1
Q ss_pred HHhcCCCccEEEEcC----CC---HHHHHHHHHHhccCCceEEEE
Q 016978 258 VDLTDGGVDYSFECI----GN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 258 ~~~~~~g~d~vid~~----g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
....++.+|+|+-.. +. ...++.+.+.|+++ |+++..
T Consensus 113 ~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 156 (194)
T d1dusa_ 113 ENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV 156 (194)
T ss_dssp TTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred hhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence 112234799988521 11 23578888999997 987653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.11 E-value=0.063 Score=44.40 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc-CCCccE
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-DGGVDY 267 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~-~~g~d~ 267 (379)
.++++||=+|+| .|..+..+++ .|. +|++++.+++-++.+++ .|...-+...+ +..+. ++.||+
T Consensus 36 ~~~~~vLDiGCG-~G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d--------~~~~~~~~~fD~ 104 (246)
T d1y8ca_ 36 LVFDDYLDLACG-TGNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD--------ISNLNINRKFDL 104 (246)
T ss_dssp CCTTEEEEETCT-TSTTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC--------GGGCCCSCCEEE
T ss_pred CCCCeEEEEeCc-CCHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccc--------hhhhcccccccc
Confidence 446799999886 4666666665 477 89999999987776654 34332222222 12222 338999
Q ss_pred EEEcCCC----------HHHHHHHHHHhccCCceEEE
Q 016978 268 SFECIGN----------VSVMRAALECCHKGWGTSVI 294 (379)
Q Consensus 268 vid~~g~----------~~~~~~~~~~l~~~~G~iv~ 294 (379)
|+-..+. ..+++.+.+.|+++ |.++.
T Consensus 105 i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~ 140 (246)
T d1y8ca_ 105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF 140 (246)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred cceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence 9854332 13578888889997 99874
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.08 E-value=0.27 Score=37.10 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=32.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~ 231 (379)
.+.+|.|+|+|.+|...+..+...+. .+++.++..+++
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~ 43 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK 43 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence 46789999999999998888888774 579999988876
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.02 Score=38.42 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=30.1
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
++|.|+|+|.+|.+.++-++.+|. ++++.+.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence 478999999999999999999999 8888876544
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.033 Score=44.01 Aligned_cols=38 Identities=34% Similarity=0.385 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
....++|+|+|+|+.|+.|+..+..+|. +|+.++..++
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc
Confidence 4456899999999999999999999999 9999987653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.054 Score=43.22 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=35.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
++|.|+|+|.+|...++++...|+ +|+..+.+++.++.++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~ 44 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK 44 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence 589999999999999999999999 9999999988766543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.91 E-value=0.13 Score=39.04 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=59.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNV 275 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~ 275 (379)
+|.++|+|.+|.+.+.-....|. ++++.+++.++.+.+ +++|....- +..+.+. ..|+||-|+..
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~-------~~~~~~~-----~~dvIilavkp- 67 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM-------SHQDLID-----QVDLVILGIKP- 67 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS-------SHHHHHH-----TCSEEEECSCG-
T ss_pred EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec-------hhhhhhh-----ccceeeeecch-
Confidence 57889999999988776666677 899999998876665 567764321 2222222 47999988865
Q ss_pred HHHHHHHHHhccCCceEEEEc
Q 016978 276 SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 276 ~~~~~~~~~l~~~~G~iv~~g 296 (379)
..+...+..+.++ ..++.+.
T Consensus 68 ~~~~~vl~~l~~~-~~iis~~ 87 (152)
T d2ahra2 68 QLFETVLKPLHFK-QPIISMA 87 (152)
T ss_dssp GGHHHHHTTSCCC-SCEEECC
T ss_pred HhHHHHhhhcccc-eeEeccc
Confidence 5578888888885 6666553
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=93.89 E-value=0.11 Score=42.21 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHH---cCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKA---AGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~---~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~ 261 (379)
++++.+||=+|+| .|..+..+++. .++ +|+++|.+++-++.+++ .+... .... + .....
T Consensus 37 ~~~~~~vLDlGCG-tG~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~-d--------~~~~~ 105 (225)
T d1im8a_ 37 VTADSNVYDLGCS-RGAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-D--------IRHVE 105 (225)
T ss_dssp CCTTCEEEEESCT-TCHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS-C--------TTTCC
T ss_pred cCCCCEEEEeccc-hhhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccc-h--------hhccc
Confidence 6889999999885 46666666664 466 99999999998888765 23221 1211 1 11222
Q ss_pred CCCccEEEEcCCC--------HHHHHHHHHHhccCCceEEEEc
Q 016978 262 DGGVDYSFECIGN--------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 262 ~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
...+|+++-...- ...++.+.+.|+|+ |.++...
T Consensus 106 ~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~ 147 (225)
T d1im8a_ 106 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE 147 (225)
T ss_dssp CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence 2356766543221 25689999999997 9998763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.86 E-value=0.035 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
..++|+|+|+|+.|+.++..+...|. +|+++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 45899999999999999999999999 999998653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.2 Score=37.83 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
.|++|||+|+|.+|.--+..+...|+ +|++++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 58999999999999999999999999 7888743
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.13 Score=44.71 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=44.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh----hH---HHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCcc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP----KK---FDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVD 266 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~----~~---~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d 266 (379)
+.|||+|+ |-+|..++..+...|+ +|+++++.. +. .+....-+...+. |-.+ ...+...+.. .++|
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~---~~~d 76 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-RKGLEKVFKE---YKID 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-HHHHHHHHHH---SCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC-HHHHHHHHhc---cCCC
Confidence 57999988 9999999998888998 899886421 11 1222222333222 2222 1222222222 2799
Q ss_pred EEEEcCCC
Q 016978 267 YSFECIGN 274 (379)
Q Consensus 267 ~vid~~g~ 274 (379)
+||++++.
T Consensus 77 ~VihlAa~ 84 (347)
T d1z45a2 77 SVIHFAGL 84 (347)
T ss_dssp EEEECCSC
T ss_pred EEEEcccc
Confidence 99998764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.84 E-value=0.19 Score=34.92 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCChHHHHH-HHHHHHcCCCeEEEEcCCh-hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAV-AEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSF 269 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a-~~la~~~g~~~vi~v~~~~-~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vi 269 (379)
....++|.++|.|++|..+ +++++..|+ .|.+.|... ...+.+++.|+.....++. .. . .++|+|+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~--~~-------i--~~~d~vV 72 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE--EH-------I--EGASVVV 72 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG--GG-------G--TTCSEEE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc--cc-------C--CCCCEEE
Confidence 3456899999998899776 899999999 999998753 3456667789865443332 11 1 2578887
Q ss_pred EcCCC
Q 016978 270 ECIGN 274 (379)
Q Consensus 270 d~~g~ 274 (379)
-+.+-
T Consensus 73 ~S~AI 77 (96)
T d1p3da1 73 VSSAI 77 (96)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 65443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.80 E-value=0.026 Score=47.81 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
|++|+|+|+|.-|+.++..+...|+ +|++++.++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 5899999999999999999999999 899998653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.21 Score=41.21 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.+.+|+|+|+|++|-.+++.+..+|.++++.+|..
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 35799999999999999999999999999999753
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.073 Score=46.28 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=53.2
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCce---EeCCCCCCchHHHHHHHhcC
Q 016978 190 AKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTE---FVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 190 ~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~---v~~~~~~~~~~~~~i~~~~~ 262 (379)
....+|++||-+|+| .|.+++.+| ..|+++|++++.++. .+.+ ++.+... ++..+. .++ .+..
T Consensus 34 ~~~~~~~~VLDlGcG-tG~ls~~aa-~~Ga~~V~avd~s~~-~~~a~~~~~~~~~~~~i~~i~~~~--~~l-----~~~~ 103 (328)
T d1g6q1_ 34 KDLFKDKIVLDVGCG-TGILSMFAA-KHGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKL--EDV-----HLPF 103 (328)
T ss_dssp HHHHTTCEEEEETCT-TSHHHHHHH-HTCCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCT--TTS-----CCSS
T ss_pred cccCCcCEEEEeCCC-CCHHHHHHH-HhCCCEEEEEeCCHH-HHHHHHHHHHhCccccceEEEeeh--hhc-----cCcc
Confidence 345689999999986 355555444 468879999998752 2333 3334322 222221 111 1222
Q ss_pred CCccEEEEc-CCC--------HHHHHHHHHHhccCCceEE
Q 016978 263 GGVDYSFEC-IGN--------VSVMRAALECCHKGWGTSV 293 (379)
Q Consensus 263 ~g~d~vid~-~g~--------~~~~~~~~~~l~~~~G~iv 293 (379)
..+|+|+.. .+. ...+...-+.|+++ |+++
T Consensus 104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii 142 (328)
T d1g6q1_ 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred cceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence 379998752 221 23345555789996 8875
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.50 E-value=0.2 Score=34.21 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=46.9
Q ss_pred EEEEEcCChHHHH-HHHHHHHcCCCeEEEEcCCh-hHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDP-KKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Gag~vG~~-a~~la~~~g~~~vi~v~~~~-~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|-++|.|++|.. ++++++..|+ .|.+.|..+ +..+.++++|+......+. .++ .++|+|+-+..
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~--~~i---------~~~d~vV~SsA 69 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA--DNW---------YDPDLVIKTPA 69 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT--TSC---------CCCSEEEECTT
T ss_pred EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc--ccc---------CCCCEEEEecC
Confidence 5777899889985 5799999999 999999876 4567788999875443322 221 25888886544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.35 E-value=0.067 Score=42.55 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=55.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-----CCCC--CCchHHHHHHHhcCCCccEE
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-----NPKD--HDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-----~~~~--~~~~~~~~i~~~~~~g~d~v 268 (379)
.+|.|+|+|..|.+.+.++...|. +|....++++..+.+.+-+....+ .+.. ...++.+.+. +.|+|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-----~ad~i 81 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN-----GAEII 81 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT-----TCSCE
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC-----CCCEE
Confidence 469999999999999988888887 899999999888777643321110 0100 0123333332 47999
Q ss_pred EEcCCCHHHHHHHHHHhc
Q 016978 269 FECIGNVSVMRAALECCH 286 (379)
Q Consensus 269 id~~g~~~~~~~~~~~l~ 286 (379)
+-++.+ ..++..++.+.
T Consensus 82 iiavPs-~~~~~~~~~~~ 98 (189)
T d1n1ea2 82 LFVIPT-QFLRGFFEKSG 98 (189)
T ss_dssp EECSCH-HHHHHHHHHHC
T ss_pred EEcCcH-HHHHHHHHHHH
Confidence 999887 45666665543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.32 E-value=0.059 Score=46.70 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=29.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
+++||+|+ |-+|..++..+...|+ +|+++++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~ 34 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR 34 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence 57999998 9999999999999999 89999874
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.086 Score=45.81 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=44.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC----ChhHHHHHHh---cCCceE-eCCCCCCchHHHHHHHhcCCCccE
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI----DPKKFDRAKN---FGVTEF-VNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~----~~~~~~~~~~---lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
+|||+|+ |-+|..++..+...|+ +|+++++ ........+. -+...+ .|-.+ ...+.+.+++ .++|+
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~l~~~~~~---~~~d~ 76 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-EALMTEILHD---HAIDT 76 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-HHHHHHHHHH---TTCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-HHHHHHHHhc---cCCCE
Confidence 5999988 9999999999999998 8998864 2222232222 233222 12222 1233333333 27999
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
||++++.
T Consensus 77 ViHlAa~ 83 (338)
T d1udca_ 77 VIHFAGL 83 (338)
T ss_dssp EEECCSC
T ss_pred EEECCCc
Confidence 9998753
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.25 E-value=0.35 Score=37.68 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=57.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC-C-hhHHHHHHhcCCceEeCCCC----------CCchHHHHHHHhcCCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-D-PKKFDRAKNFGVTEFVNPKD----------HDKPIQQVLVDLTDGG 264 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~-~-~~~~~~~~~lg~~~v~~~~~----------~~~~~~~~i~~~~~~g 264 (379)
+|.|.|.|-+|...++.+....--.++++.. . ......+...+.......+. ....+.+.. .+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~~ 77 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----KT 77 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----HH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----hc
Confidence 6889999999999999988765227777643 2 23334444444332211110 001111111 15
Q ss_pred ccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+|+||+|.-.....+-..+..+ -+++..+.
T Consensus 78 vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~ 109 (178)
T d1b7go1 78 SDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG 109 (178)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred CCEEEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence 899999999866667777777775 67766544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.21 E-value=0.17 Score=42.98 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eEeCCCCC---CchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v~~~~~~---~~~~~~~i~~~~~~g~d~v 268 (379)
.-++|||+|.|. |.++-.+++..+.++|.+++.+++-.+.++++... ..++.... ..+-.+.+++...+.+|+|
T Consensus 80 ~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 347999997643 44455777777777899999999988888875310 00000000 1244556665555589987
Q ss_pred E-EcCC---------CHHHHHHHHHHhccCCceEEEEc
Q 016978 269 F-ECIG---------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 269 i-d~~g---------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
| |+.. +.++++.+.++|+++ |.++.-.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence 7 4432 256799999999997 9998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.21 E-value=0.061 Score=42.24 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
-+|++|||+|+|+.+.+++..+.. ..+|+++.++.+|.+.+.
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l~ 57 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEALA 57 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHHH
Confidence 578999999999999988766644 348999999988866543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.21 E-value=0.48 Score=36.58 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=61.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC-C-hhHHHHHHhcCCceEeCCCCC-----------CchHHHHHHHhcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI-D-PKKFDRAKNFGVTEFVNPKDH-----------DKPIQQVLVDLTDG 263 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~-~-~~~~~~~~~lg~~~v~~~~~~-----------~~~~~~~i~~~~~~ 263 (379)
+|.|.|-|-+|..+++++...+--.++++.. + ......+..++.+......+. ..++.+.. .
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-----~ 77 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-----D 77 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-----H
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-----c
Confidence 6889999999999999887665226666643 2 234455566666553322210 01111111 2
Q ss_pred CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 264 GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 264 g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
++|+|+||+|.-.....+-..+..+ -+.|..+..
T Consensus 78 ~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~ 111 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGE 111 (171)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 6999999999966677777888886 777776553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.11 Score=42.23 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHH----hc
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVD----LT 261 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~----~~ 261 (379)
+....++||=+|.+ .|..++.+|+.+.. .+|+.++.+++..+.+++ .|....+.... .+..+.+.+ ..
T Consensus 56 ~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~--Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 56 RLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL--KPALETLDELLAAGE 132 (219)
T ss_dssp HHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE--SCHHHHHHHHHHTTC
T ss_pred HccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE--eehhhcchhhhhhcc
Confidence 34456899999985 57888888888742 399999999988766654 45433222111 223333322 22
Q ss_pred CCCccEEEEcCCC---HHHHHHHHHHhccCCceEEEE
Q 016978 262 DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 262 ~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.+.||.||--... ...+..++..|+++ |.++.=
T Consensus 133 ~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D 168 (219)
T d2avda1 133 AGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL 168 (219)
T ss_dssp TTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred cCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence 3479998843332 35578999999996 877654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.45 Score=35.89 Aligned_cols=97 Identities=13% Similarity=0.241 Sum_probs=63.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhH---HHHHHhcCCceEeCCCCCCchH---HH-----------
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKK---FDRAKNFGVTEFVNPKDHDKPI---QQ----------- 255 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g--~~~vi~v~~~~~~---~~~~~~lg~~~v~~~~~~~~~~---~~----------- 255 (379)
++|.|+|+ |.+|.-++.+.+..- + +|++...+..- .+.++++....++..++ ... ..
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~--~~~~~l~~~l~~~~~~~~~ 78 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE--ASAKLLKTMLQQQGSRTEV 78 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH--HHHHHHHHHHHHTTCCCEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH--HHHHHHHHHhhhhcccccc
Confidence 37899999 999999999999873 5 77776554432 34556788887765543 211 11
Q ss_pred -----HHHHhcCC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 256 -----VLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 256 -----~i~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+.... .+|+|+.+..+..-+.-.+..++. |+-+.+.+
T Consensus 79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLAN 124 (151)
T d1q0qa2 79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLAN 124 (151)
T ss_dssp EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECC
T ss_pred ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEc
Confidence 12222222 688888887776777777787777 44455543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.11 Score=45.54 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.|||+|+ |-+|..++..+...|. .|+++++..
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~ 35 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA 35 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 367899988 9999999998889999 899998743
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=92.86 E-value=0.11 Score=44.80 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce--EeCCCCCCchHHHHHHHhc--CCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE--FVNPKDHDKPIQQVLVDLT--DGG 264 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~--v~~~~~~~~~~~~~i~~~~--~~g 264 (379)
.+|++||=.++|. |..++++|+ |+.+|++++.+++..+.+++ .|.+. ++.. +..+.++... ++.
T Consensus 144 ~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~-----d~~~~~~~~~~~~~~ 215 (318)
T d1wxxa2 144 FRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEA-----NAFDLLRRLEKEGER 215 (318)
T ss_dssp CCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES-----CHHHHHHHHHHTTCC
T ss_pred hCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeec-----cHHHHhhhhHhhhcC
Confidence 4689999886633 333445554 34499999999998887764 45432 2222 2333333322 237
Q ss_pred ccEEE-Ec--CC--C----------HHHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSF-EC--IG--N----------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vi-d~--~g--~----------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
||+|+ |. .+ . .+++..++++|+|+ |.++....
T Consensus 216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~sc 262 (318)
T d1wxxa2 216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASC 262 (318)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 99877 32 11 1 24567888899997 99988755
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.53 Score=35.36 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=50.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH----HHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK----FDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~----~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+.|+|.|.|.+|..+++.+...|. .+++++.++++ .+.+...|...+. -+. .-.+.+++..-..+|.++-+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~-Gd~---~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIP-GDS---NDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEE-SCT---TSHHHHHHHTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEE-ccC---cchHHHHHhccccCCEEEEc
Confidence 568999999999999999999998 78888777653 2233334554433 221 11234444433478999988
Q ss_pred CCCHH
Q 016978 272 IGNVS 276 (379)
Q Consensus 272 ~g~~~ 276 (379)
++...
T Consensus 79 ~~~d~ 83 (153)
T d1id1a_ 79 SDNDA 83 (153)
T ss_dssp SSCHH
T ss_pred cccHH
Confidence 87743
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.75 E-value=0.36 Score=36.98 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=57.0
Q ss_pred EEEEEcCChHHHH-HHHHHHHcCCCeEEEEcCChhHHHHH-HhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGLGTVGLA-VAEGAKAAGASRVIGIDIDPKKFDRA-KNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Gag~vG~~-a~~la~~~g~~~vi~v~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|.|+|+|.+|.- .+...+..+--.+++++.++++.+.+ ++++...++.. +.+.+ ...+|+|+-|+..
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~ll----~~~iD~V~I~tp~ 72 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTD------YRDVL----QYGVDAVMIHAAT 72 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSS------TTGGG----GGCCSEEEECSCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccccccc------HHHhc----ccccceecccccc
Confidence 6789999999964 45555555332677788887766554 45776544322 11111 1258999999888
Q ss_pred HHHHHHHHHHhccCCceEEEEcc
Q 016978 275 VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 275 ~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
..-...+..++.. |.=|++..
T Consensus 73 ~~H~~~~~~al~~--gk~V~~EK 93 (167)
T d1xeaa1 73 DVHSTLAAFFLHL--GIPTFVDK 93 (167)
T ss_dssp GGHHHHHHHHHHT--TCCEEEES
T ss_pred ccccccccccccc--ccccccCC
Confidence 7667777777777 44455544
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.70 E-value=0.089 Score=38.51 Aligned_cols=41 Identities=32% Similarity=0.347 Sum_probs=34.0
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+...-.++++|+|+|+|.+|+-+++.+..+|. +|..+...+
T Consensus 23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~ 63 (123)
T d1nhpa2 23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD 63 (123)
T ss_dssp HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence 33334567899999999999999999999999 899986654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.052 Score=44.58 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=46.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCceE-eCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEF-VNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
.+++|||+|+ |-+|..+++.+...|. .+|+++.+++.+...-..-..... .|..+ . +.+.+.. .++|+++.
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~----~-~~~~~~~-~~~d~vi~ 86 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK----L-DDYASAF-QGHDVGFC 86 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG----G-GGGGGGG-SSCSEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc----c-ccccccc-cccccccc
Confidence 3579999998 9999999998888884 489999886543221111111211 22211 1 1122222 26999999
Q ss_pred cCCC
Q 016978 271 CIGN 274 (379)
Q Consensus 271 ~~g~ 274 (379)
|+|.
T Consensus 87 ~~~~ 90 (232)
T d2bkaa1 87 CLGT 90 (232)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9886
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.55 E-value=0.068 Score=44.78 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
+|||+|+ |-+|..++..++..|+ .|++++++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~ 34 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQ 34 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEeech
Confidence 5899998 9999999999999999 89999765
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.54 E-value=0.19 Score=39.81 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|.+|.|+|.|.+|...+++++.+|. +|++.+....
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~ 81 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA 81 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence 48999999999999999999999999 8999877554
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.54 E-value=0.057 Score=44.42 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
++++||+|+ +++|.+.++.+...|+ +|+.+++++++
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~ 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence 467899988 9999999999999999 89999887664
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.47 E-value=0.23 Score=39.00 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
..|.++.|+|.|.+|...+++++.+|. +|++.++...+.+. ...+... .++.+.+++ .|+|.-++
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~--------~~l~ell~~-----sDiv~~~~ 106 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL--------LSLDDLLAR-----ADFISVHL 106 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE--------CCHHHHHHH-----CSEEEECC
T ss_pred ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee--------ccHHHHHhh-----CCEEEEcC
Confidence 357899999999999999999999999 99999876544332 2333321 123333332 57766554
Q ss_pred CC-HH---HH-HHHHHHhccCCceEEEE
Q 016978 273 GN-VS---VM-RAALECCHKGWGTSVIV 295 (379)
Q Consensus 273 g~-~~---~~-~~~~~~l~~~~G~iv~~ 295 (379)
.- ++ .+ ...+..|+++ ..+|.+
T Consensus 107 Plt~~T~~lin~~~l~~mk~~-a~lIN~ 133 (184)
T d1ygya1 107 PKTPETAGLIDKEALAKTKPG-VIIVNA 133 (184)
T ss_dssp CCSTTTTTCBCHHHHTTSCTT-EEEEEC
T ss_pred CCCchhhhhhhHHHHhhhCCC-ceEEEe
Confidence 32 11 11 3455566664 555544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.47 E-value=0.098 Score=37.80 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.++|+|+|+|.+|+-+++.+..+|. +|..+.+.++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence 3789999999999999999999999 8998876654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.17 Score=43.71 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=45.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc-CCceEeCCC-CCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF-GVTEFVNPK-DHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l-g~~~v~~~~-~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|||+|+ |-+|..+++.+...|..+|++++....+...+.+. ... ++..+ ....++.+.... ++|+|+.+++
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~-~i~~Di~~~~~~~~~~~~----~~d~Vih~a~ 76 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFH-FVEGDISIHSEWIEYHVK----KCDVVLPLVA 76 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEE-EEECCTTTCSHHHHHHHH----HCSEEEECBC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeE-EEECccCChHHHHHHHHh----CCCccccccc
Confidence 6999988 99999999888888844899997765544333322 222 22211 112344333322 5899999877
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 77 ~ 77 (342)
T d2blla1 77 I 77 (342)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.23 E-value=0.14 Score=40.76 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=46.1
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhcCCCc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLTDGGV 265 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~~~g~ 265 (379)
.....+ .|++||=.|+|. |.+++. |..+|+++|++++.+++..+.+++.-.. .++..+- .+ .++.|
T Consensus 42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~---------~~-l~~~f 108 (197)
T d1ne2a_ 42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---------SE-ISGKY 108 (197)
T ss_dssp HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---------GG-CCCCE
T ss_pred HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEeh---------hh-cCCcc
Confidence 344455 589999998753 444443 4557877899999999999988874332 2333221 12 23589
Q ss_pred cEEEE
Q 016978 266 DYSFE 270 (379)
Q Consensus 266 d~vid 270 (379)
|+||-
T Consensus 109 D~Vi~ 113 (197)
T d1ne2a_ 109 DTWIM 113 (197)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 99884
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=92.21 E-value=0.53 Score=36.20 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=58.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHHhcCCce--------------EeCCCCCCchHHHHHHHh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--PKKFDRAKNFGVTE--------------FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~--~~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~i~~~ 260 (379)
+|.|.|-|-+|.++.+++...+. +++++... .+.+.++.++...+ .++.+.-.-.......++
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i 80 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI 80 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence 57899999999999999888888 77777432 23344443332211 010000000000001122
Q ss_pred cCC--CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 261 TDG--GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 261 ~~~--g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
... ++|+|+||+|.-...+.+...+..+ .+=|.+..+.
T Consensus 81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~ 120 (168)
T d2g82a1 81 PWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA 120 (168)
T ss_dssp CTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred cccccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence 222 8999999999855566677777775 5556665543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=92.16 E-value=0.11 Score=43.78 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEe-CCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFV-NPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
..++.+||=+|+| .|..+..+++...-.++++++.+++-.+.+++......+ ..+. .++ .+.++.+|+|+.
T Consensus 82 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~--~~l-----~~~~~sfD~v~~ 153 (268)
T d1p91a_ 82 DDKATAVLDIGCG-EGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRL-----PFSDTSMDAIIR 153 (268)
T ss_dssp CTTCCEEEEETCT-TSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT--TSC-----SBCTTCEEEEEE
T ss_pred CCCCCEEEEeCCC-CcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh--hhc-----cCCCCCEEEEee
Confidence 4677899989885 466677777766323899999999988888865433222 2211 110 122347999997
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEc
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.... ..+.++.+.|+++ |.++...
T Consensus 154 ~~~~-~~~~e~~rvLkpg-G~l~~~~ 177 (268)
T d1p91a_ 154 IYAP-CKAEELARVVKPG-GWVITAT 177 (268)
T ss_dssp ESCC-CCHHHHHHHEEEE-EEEEEEE
T ss_pred cCCH-HHHHHHHHHhCCC-cEEEEEe
Confidence 5444 5588999999997 9998764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.16 E-value=0.079 Score=41.95 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=34.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
++|.|+|+|.+|...++++...|+ +|+..+.+++.++.+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~ 44 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGL 44 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhh
Confidence 578999999999998888888899 8999999988766543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.08 E-value=0.092 Score=43.01 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
....++|+|+|+|+.|+.++..+..+|+ .|+.++.+++
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~ 83 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK 83 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence 4567999999999999999999999999 8999976553
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.06 E-value=0.11 Score=40.67 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=33.6
Q ss_pred EEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 197 IVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 197 ~VlI~-Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
+|.|+ |+|.+|.+.++.+...|+ +|+..++++++.+.+.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~ 41 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA 41 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 57888 669999999999999999 8999999998866553
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.99 E-value=1.1 Score=33.01 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=44.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHc-CCCeEEEE-cCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAA-GASRVIGI-DIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~-g~~~vi~v-~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|.|.|+ |-+|..++...... +. ++++. +.. +... .....++|++||.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~~-~~~~-------------------------~~~~~~~DvvIDFS~ 53 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDAG-DPLS-------------------------LLTDGNTEVVIDFTH 53 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECTT-CCTH-------------------------HHHTTTCSEEEECCC
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecC-Cchh-------------------------hhccccCCEEEEccc
Confidence 5889998 99999988887655 45 55543 221 1011 111235788888876
Q ss_pred CHHHHHHHHHHhccCCceEEEEccCC
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
. +.....++.+... |.=+.+|...
T Consensus 54 p-~~~~~~~~~~~~~-~~~~ViGTTG 77 (135)
T d1yl7a1 54 P-DVVMGNLEFLIDN-GIHAVVGTTG 77 (135)
T ss_dssp T-TTHHHHHHHHHHT-TCEEEECCCC
T ss_pred H-HHHHHHHHHHHhc-CCCEEEeccc
Confidence 6 4454555555553 6666677654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.2 Score=40.50 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC----c--eEeCCCCCCchHHHHHHHhcCCC
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV----T--EFVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~----~--~v~~~~~~~~~~~~~i~~~~~~g 264 (379)
...++.+||=+|+| .|..+..+++..+. +|++++.+++-.+.+++... . .++..+- .++ ....+.
T Consensus 57 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~--~~~-----~~~~~~ 127 (222)
T d2ex4a1 57 NKTGTSCALDCGAG-IGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDF-----TPEPDS 127 (222)
T ss_dssp -CCCCSEEEEETCT-TTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGC-----CCCSSC
T ss_pred CCCCCCEEEEeccC-CCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccc--ccc-----cccccc
Confidence 45678899999886 47777777666665 89999999998888876432 1 1222211 111 112237
Q ss_pred ccEEEEcC-----CCH---HHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSFECI-----GNV---SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+|+... ..+ ..+..+.+.|+++ |.++....
T Consensus 128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~ 167 (222)
T d2ex4a1 128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN 167 (222)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred ccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence 99998632 222 4688889999997 99987643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.11 Score=37.58 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.++|+|+|+|.+|+-+++.++.+|. +|..+.+.+.
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecch
Confidence 3789999999999999999999999 8999977653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.87 E-value=0.12 Score=37.48 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+..++|+|+|+|.+|.-+++.++.+|. +|..+.+.+
T Consensus 20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 55 (117)
T d1onfa2 20 KESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN 55 (117)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred CCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence 345899999999999999999999999 899997654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.78 E-value=0.12 Score=45.16 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 193 EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 193 ~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
..+-+|||+|+ |-+|..++..+...|. +|+++++...... ........+...+- .+........ .++|.|+.+
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~-~~~~~~~~~~~~D~--~~~~~~~~~~--~~~d~Vih~ 86 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHM-TEDMFCDEFHLVDL--RVMENCLKVT--EGVDHVFNL 86 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSS-CGGGTCSEEEECCT--TSHHHHHHHH--TTCSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccch-hhhcccCcEEEeec--hhHHHHHHHh--hcCCeEeec
Confidence 45789999988 9999999999999999 8999876433211 11122222222221 2232222222 268999997
Q ss_pred CCC
Q 016978 272 IGN 274 (379)
Q Consensus 272 ~g~ 274 (379)
++.
T Consensus 87 a~~ 89 (363)
T d2c5aa1 87 AAD 89 (363)
T ss_dssp CCC
T ss_pred ccc
Confidence 744
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.69 E-value=0.091 Score=44.92 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
....++|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 3445799999999999999999999999 899998654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.66 E-value=0.09 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|+|+|+|+.|++++.+++..|..+|.++++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 689999999999999999999975788887754
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.62 E-value=0.12 Score=37.70 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=30.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
++++|+|+|.+|+=+++++..+|. +|..+.+.+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQ 57 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCc-ceeEEEeccc
Confidence 799999999999999999999999 8999966543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.62 E-value=0.15 Score=37.75 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
++++++|+|+|+|.+|+-++..++.+|. +|..+.+.+.
T Consensus 32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~ 69 (133)
T d1q1ra2 32 LIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR 69 (133)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred hccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence 4568999999999999999999999999 8999976653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.57 E-value=0.23 Score=41.81 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC-------------c---eEeCCCCCCchHHHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV-------------T---EFVNPKDHDKPIQQV 256 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~-------------~---~v~~~~~~~~~~~~~ 256 (379)
...++|||+|+|. |..+-.+++. +..+|.+++.+++=.+.++++.. + .++. .+....
T Consensus 71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-----~Da~~~ 143 (276)
T d1mjfa_ 71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-----GDGFEF 143 (276)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-----SCHHHH
T ss_pred CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-----ChHHHH
Confidence 4458999997753 2333444454 44589999999998888886431 1 1221 234444
Q ss_pred HHHhcCCCccEEE-EcCCC---------HHHHHHHHHHhccCCceEEEEc
Q 016978 257 LVDLTDGGVDYSF-ECIGN---------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 257 i~~~~~~g~d~vi-d~~g~---------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+++ .+.+|+|| |.... .+++..+.+.|+++ |.++.-+
T Consensus 144 l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~ 190 (276)
T d1mjfa_ 144 IKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA 190 (276)
T ss_dssp HHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred Hhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence 543 35899877 44332 46789999999996 9988654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.55 E-value=0.14 Score=37.04 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.++++|+|+|.+|+=.++.+..+|. +|..+.+.+.
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeecc
Confidence 4889999999999999999999999 8888866543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.086 Score=44.04 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCCEEEEEcC-ChHHHHHHH-HHHH--cCCCeEEEEcCChhHHHHHH
Q 016978 194 PGSIVAVFGL-GTVGLAVAE-GAKA--AGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~-la~~--~g~~~vi~v~~~~~~~~~~~ 236 (379)
.|+.+||+|+ +++|.+.++ ||+. .|+ +|+.+++++++++.+.
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~ 50 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK 50 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence 4678888888 999998665 5553 588 9999999998876553
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.12 Score=39.86 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=62.6
Q ss_pred ccccccchhhhhhhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCc
Q 016978 173 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDK 251 (379)
Q Consensus 173 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~ 251 (379)
..+||+....+..|.+..---.|++|+|+|- ..+|.-++.++...|+ +|+.+.....
T Consensus 15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~--------------------- 72 (166)
T d1b0aa1 15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTK--------------------- 72 (166)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCS---------------------
T ss_pred CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccc---------------------
Confidence 3455554444443323222357999999998 7799999999999999 8887743322
Q ss_pred hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 252 PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 252 ~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+..+.++ .+|+++-++|.+.++. -..++++ ..++.+|..
T Consensus 73 ~l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~ 111 (166)
T d1b0aa1 73 NLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN 111 (166)
T ss_dssp CHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred hhHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence 2222222 2788888888866554 3457775 778888763
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.48 E-value=0.67 Score=40.62 Aligned_cols=32 Identities=34% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
|.+|||+|+ |-+|..++..+...|+ .|+++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDn 33 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN 33 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEec
Confidence 689999988 9999999999999999 8999974
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.43 E-value=0.075 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=28.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|+|+|+|..|+.++..++..|.++|++++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999999975699997754
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.23 Score=42.48 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
++|||+|+ |-+|..++..+...|+ +|+++++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 68999988 9999999998888999 8999875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.30 E-value=0.49 Score=35.57 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK 236 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~ 236 (379)
+|-|+|.|.+|...+.-+...|. .+++.++.+++...++
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~ 40 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIER 40 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHh
Confidence 57889999999999999888998 7888876665544444
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=91.28 E-value=0.3 Score=41.13 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHh----cCCceEeCCCCCCchHHHHHHHhc-CCC
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKN----FGVTEFVNPKDHDKPIQQVLVDLT-DGG 264 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~i~~~~-~~g 264 (379)
++.+..+||=+|+| .|..+..+++..+. .+|++++.+++-.+.+++ .+.+.-+...+ +.+.. ++.
T Consensus 24 ~~~~~~~ILDiGcG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d--------~~~~~~~~~ 94 (281)
T d2gh1a1 24 KITKPVHIVDYGCG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD--------ATEIELNDK 94 (281)
T ss_dssp CCCSCCEEEEETCT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC--------TTTCCCSSC
T ss_pred ccCCcCEEEEecCc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc--------cccccccCC
Confidence 46677899989987 48888888887642 389999999987777664 34332221111 01111 237
Q ss_pred ccEEEEcCC-----C-HHHHHHHHHHhccCCceEEEEc
Q 016978 265 VDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 265 ~d~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+|+|+-... . ...+..+.+.|+++ |.++.+-
T Consensus 95 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 131 (281)
T d2gh1a1 95 YDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE 131 (281)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred ceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence 999985422 2 35689999999997 9988763
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.25 E-value=0.23 Score=39.15 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG 239 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg 239 (379)
-.|.+|.|+|.|.+|...+++++.+|. +|+..++........+..+
T Consensus 42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~ 87 (188)
T d2naca1 42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELN 87 (188)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHT
T ss_pred ccccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccc
Confidence 357899999999999999999999999 8999987654444444444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.24 E-value=0.31 Score=41.64 Aligned_cols=101 Identities=18% Similarity=0.072 Sum_probs=64.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eEeCCCCC---CchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v~~~~~~---~~~~~~~i~~~~~~g~d~v 268 (379)
.-++|||+|.|. |..+-.+++.....+|.+++.+++-.+.++++... ..++.... -.+..+.+++ +...+|+|
T Consensus 106 ~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEE
T ss_pred CCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCEE
Confidence 347999998753 44445677777766999999999999988875321 01111000 1345556655 44589998
Q ss_pred EEcCCC----------HHHHHHHHHHhccCCceEEEEcc
Q 016978 269 FECIGN----------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 269 id~~g~----------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
|--... .+++..+.++|+++ |.++.-+.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~ 221 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE 221 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence 832211 35688889999996 99987753
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=91.21 E-value=0.16 Score=42.78 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI-DPKKFD 233 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~-~~~~~~ 233 (379)
.+||+|+ +++|.+.++.+...|+ +|+.+.+ ++++.+
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~ 41 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEAN 41 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHH
Confidence 3577787 9999999999999999 7776544 444443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=91.21 E-value=1.5 Score=33.50 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce-EeCCCCCCchHHHHHHHhcCC
Q 016978 191 KVEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE-FVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 191 ~~~~g~~VlI~Ga--g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~-v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.+.+|.+||=.++ |.+|+ . |...|+ ++++++.+++..+.+++ ++... ++..+. ..+... ......
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~--d~~~~~-~~~~~~ 109 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV--EVFLPE-AKAQGE 109 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH--HHHHHH-HHHTTC
T ss_pred cccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh--hccccc-ccccCC
Confidence 4678899988754 65554 3 334688 78999999998776653 45433 433322 222222 223334
Q ss_pred CccEEE-Ec---CCCHHHHHHHHH--HhccCCceEEE
Q 016978 264 GVDYSF-EC---IGNVSVMRAALE--CCHKGWGTSVI 294 (379)
Q Consensus 264 g~d~vi-d~---~g~~~~~~~~~~--~l~~~~G~iv~ 294 (379)
.||+|| |. .+-...+..++. .++++ |.++.
T Consensus 110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi 145 (171)
T d1ws6a1 110 RFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL 145 (171)
T ss_dssp CEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred ccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence 799987 42 222334444443 47775 76654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=91.19 E-value=0.39 Score=41.14 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc---eEeCCCC---CCchHHHHHHHhcCCCccE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT---EFVNPKD---HDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~---~v~~~~~---~~~~~~~~i~~~~~~g~d~ 267 (379)
.-++|||+|.|. |..+-++++.....+|.+++.+++-.+.+++.-.. ..++... ...+..+.+++ +++.+|+
T Consensus 77 ~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yDv 154 (312)
T d1uira_ 77 EPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERYDV 154 (312)
T ss_dssp CCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEEE
T ss_pred CcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-cCCcccE
Confidence 358999998753 55566677766666999999999988888764210 0000000 01345555655 3448998
Q ss_pred EE-Ec---CC---------CHHHHHHHHHHhccCCceEEEEc
Q 016978 268 SF-EC---IG---------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 268 vi-d~---~g---------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
|| |. .+ +.++++.+.+.|+++ |.++.-.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQT 195 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEec
Confidence 87 43 12 146788999999997 9988643
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.18 E-value=0.57 Score=34.99 Aligned_cols=70 Identities=24% Similarity=0.260 Sum_probs=45.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCce------EeCCCCCCchHHHHHHHhcCCCccE
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTE------FVNPKDHDKPIQQVLVDLTDGGVDY 267 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~~------v~~~~~~~~~~~~~i~~~~~~g~d~ 267 (379)
.+|.|+|| |.+|..++.++...+. ..++.++.++.+.+.+.-.-+.. .+.. .+..+.+ .+.|+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~----~~~~~~~-----~~aDi 71 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGP----EQLPDCL-----KGCDV 71 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESG----GGHHHHH-----TTCSE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcC----CChHHHh-----CCCCE
Confidence 37889997 9999999999998885 78999988766543322111111 1111 2333332 25899
Q ss_pred EEEcCCC
Q 016978 268 SFECIGN 274 (379)
Q Consensus 268 vid~~g~ 274 (379)
|+-+.|.
T Consensus 72 vVitag~ 78 (144)
T d1mlda1 72 VVIPAGV 78 (144)
T ss_dssp EEECCSC
T ss_pred EEECCCc
Confidence 9998885
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=91.06 E-value=0.12 Score=42.75 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
-.|.+|+|.|.|.+|..+++++..+|+ +|++++.
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD 62 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence 478999999999999999999999999 8888764
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=91.01 E-value=1.1 Score=37.43 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=67.8
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHHhcCCceEeCCCCC---------------
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRAKNFGVTEFVNPKDH--------------- 249 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~--~~~~~~~~~~~lg~~~v~~~~~~--------------- 249 (379)
.+.....++..|+...+|..|++++..|+.+|.+-++.+. .++.|.+.++.+|++.++...+.
T Consensus 52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~ 131 (292)
T d2bhsa1 52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR 131 (292)
T ss_dssp HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred HHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence 3445566777776667899999999999999984344443 36678899999999653321110
Q ss_pred -----------Cc-------hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHH---hccCCceEEEEc
Q 016978 250 -----------DK-------PIQQVLVDLTDGGVDYSFECIGNVSVMRAALEC---CHKGWGTSVIVG 296 (379)
Q Consensus 250 -----------~~-------~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~---l~~~~G~iv~~g 296 (379)
.. ....++.+..++.+|.++-+.|+..++.-.... ..+. .+++.+-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Ve 198 (292)
T d2bhsa1 132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQ 198 (292)
T ss_dssp TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEE
T ss_pred ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEec
Confidence 01 022233333344689999888875555444444 4453 5665553
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.97 Score=39.22 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=69.9
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHHhcCCceEeCCCC----------------
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRAKNFGVTEFVNPKD---------------- 248 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~--~~~~~~~~~~~lg~~~v~~~~~---------------- 248 (379)
.+...+++++.|+...+|..|.+++..|+.+|.+-++.+. .+++|.+.++.+|++.+.....
T Consensus 89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~ 168 (355)
T d1jbqa_ 89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL 168 (355)
T ss_dssp HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHH
T ss_pred HHcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHH
Confidence 3445567777777777799999999999999994444443 3567899999999975432110
Q ss_pred --------------CCc-------hHHHHHHHhcCCCccEEEEcCCCHHHHHH---HHHHhccCCceEEEEcc
Q 016978 249 --------------HDK-------PIQQVLVDLTDGGVDYSFECIGNVSVMRA---ALECCHKGWGTSVIVGV 297 (379)
Q Consensus 249 --------------~~~-------~~~~~i~~~~~~g~d~vid~~g~~~~~~~---~~~~l~~~~G~iv~~g~ 297 (379)
+.. ....++.+..++.+|.|+-++|+..++.- .++...+. -+++.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep 240 (355)
T d1jbqa_ 169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP 240 (355)
T ss_dssp HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence 000 11223333344568999999988554433 34445554 66765543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=90.97 E-value=0.15 Score=41.81 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.-++|+|+|+|..|+.++..+...|. +|.++++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence 34689999999999999999999999 89999764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.91 E-value=0.11 Score=42.99 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=29.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
+.|||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence 46789987 9999999999999999 8999987653
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.91 E-value=0.14 Score=40.21 Aligned_cols=37 Identities=43% Similarity=0.596 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
-.|++|.|+|.|.+|...+++++.+|+ +|++.+++..
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~ 76 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK 76 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred ccCceEEEeccccccccceeeeecccc-cccccccccc
Confidence 358999999999999999999999999 9999987643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=90.87 E-value=0.73 Score=39.42 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc---e-EeCCCCCCchHHHHHHH
Q 016978 190 AKVEPGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT---E-FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 190 ~~~~~g~~VlI~Ga--g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~---~-v~~~~~~~~~~~~~i~~ 259 (379)
..+.+|++||=..+ |+.++.+ ...|++.|++++.+++..+.+++ .|.+ + ++.. +..+.++.
T Consensus 140 ~~~~~g~~VLdlf~~~G~~sl~a----a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~-----d~~~~l~~ 210 (317)
T d2b78a2 140 NGSAAGKTVLNLFSYTAAFSVAA----AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-----DVFDYFKY 210 (317)
T ss_dssp HTTTBTCEEEEETCTTTHHHHHH----HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES-----CHHHHHHH
T ss_pred HHhhCCCceeecCCCCcHHHHHH----HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc-----cHHHHHHH
Confidence 34678999998743 6665432 24688789999999988887764 2221 1 2222 23333433
Q ss_pred hc-CC-CccEEE-EcC--CC------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 260 LT-DG-GVDYSF-ECI--GN------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~-~~-g~d~vi-d~~--g~------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.. .+ .||+|| |.- +. .+++..++++++++ |.++....
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~sc 264 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTN 264 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence 22 23 799877 421 11 24677888999997 99887654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=1.1 Score=34.58 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=74.8
Q ss_pred EEEEEcCChHHHH-HHHHHHHcCCC-eEEE-EcCChhHHHH-HHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcC
Q 016978 197 IVAVFGLGTVGLA-VAEGAKAAGAS-RVIG-IDIDPKKFDR-AKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECI 272 (379)
Q Consensus 197 ~VlI~Gag~vG~~-a~~la~~~g~~-~vi~-v~~~~~~~~~-~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~ 272 (379)
+|.|+|+|.+|.- .+...+...-. ++++ +++++++.+. .++++...++. ++.+.+.+ ..+|+|+-|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~------~~~ell~~---~~id~v~I~t 75 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD------SYEELLES---GLVDAVDLTL 75 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES------CHHHHHHS---SCCSEEEECC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee------eeeccccc---cccceeeccc
Confidence 6889999999964 46666655432 5665 4666666554 45677665542 34333332 3699999998
Q ss_pred CCHHHHHHHHHHhccCCceEEEEccCCCCcccccC-cceeee--ccEE-EeeecCCCcccccHHHHHHHHHcCCCC
Q 016978 273 GNVSVMRAALECCHKGWGTSVIVGVAASGQEISTR-PFQLVT--GRVW-KGTAFGGFKSRSQVPWLVDKYMKKEIK 344 (379)
Q Consensus 273 g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~-~~~~~~--~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~ 344 (379)
........+..++.. |.=|++..+.....-+.. ...+.. +..+ .+..+...+....+.++.+++.+|++-
T Consensus 76 p~~~h~~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig 149 (181)
T d1zh8a1 76 PVELNLPFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN 149 (181)
T ss_dssp CGGGHHHHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccccccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence 876556666676666 565666543221110100 001111 2222 122111111224567788888888865
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.83 E-value=0.1 Score=44.03 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|+|+|+|+.|+.++..++..|. +|++++..++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 58999999999999999999999 8999987653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.24 Score=38.29 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=63.0
Q ss_pred cccccccchhhhhhhhhccCC-CCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCC
Q 016978 172 VCLLGCGVPTGLGAVWNTAKV-EPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDH 249 (379)
Q Consensus 172 aa~l~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~ 249 (379)
.+.+||+....+.. ++..++ -.|++|+|+|. ..+|.-++.++...|+ +|+.+.......
T Consensus 16 ~~~~PcTp~aii~l-L~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l----------------- 76 (170)
T d1a4ia1 16 DCFIPCTPKGCLEL-IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL----------------- 76 (170)
T ss_dssp SCCCCHHHHHHHHH-HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH-----------------
T ss_pred CCCCCChHHHHHHH-HHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH-----------------
Confidence 35566655555543 344443 47999999998 7899999999999999 888885433221
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
.+.++ .+|+++-++|.+..+. -..++++ -.++.+|..
T Consensus 77 ----~~~~~-----~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~ 113 (170)
T d1a4ia1 77 ----DEEVN-----KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN 113 (170)
T ss_dssp ----HHHHT-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred ----HHHHh-----hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence 11111 3678888877766443 3457775 777777753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.80 E-value=0.39 Score=40.31 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.5
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++|||+|+ |-+|..++..+...|. +|+++.+++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~ 37 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE 37 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence 56999998 9999999998888998 888887753
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=90.71 E-value=0.49 Score=39.07 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=66.2
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc-eEeCCCCCCchHHHHHHHhc--CC
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT-EFVNPKDHDKPIQQVLVDLT--DG 263 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~i~~~~--~~ 263 (379)
++.....++.+||=+|+| .|..+..++...+. +|++++.+++-++.+++.... ..+.... .+ +.++. ++
T Consensus 86 l~~l~~~~~~~vLD~GcG-~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~--~d----~~~~~~~~~ 157 (254)
T d1xtpa_ 86 IASLPGHGTSRALDCGAG-IGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL--AS----METATLPPN 157 (254)
T ss_dssp HHTSTTCCCSEEEEETCT-TTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE--SC----GGGCCCCSS
T ss_pred HhhCCCCCCCeEEEeccc-CChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE--cc----ccccccCCC
Confidence 345556678899999986 47888888876665 899999999988888764221 1111100 01 11222 23
Q ss_pred CccEEEEcCCC-----H---HHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSFECIGN-----V---SVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vid~~g~-----~---~~~~~~~~~l~~~~G~iv~~g 296 (379)
.||+|+-.-.- + .++..+.+.|+++ |.++..-
T Consensus 158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e 197 (254)
T d1xtpa_ 158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE 197 (254)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence 79998864221 1 4578888999997 9988753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.17 Score=37.03 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=30.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++|+|+|+|.+|+-+++.++.+|. +|+.+.+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence 789999999999999999999999 899997754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.65 E-value=0.16 Score=36.52 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence 799999999999999999999999 898886654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.44 E-value=0.13 Score=41.11 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|++|.|+|.|.+|..++++++.+|+ +|++.++...
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~ 79 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM 79 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred cceeeeeeecccccccccccccccce-eeeccCCccc
Confidence 47899999999999999999999999 9999987543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.43 E-value=0.12 Score=44.21 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=33.8
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGV 240 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~ 240 (379)
++|||+|+ |-+|..++..+...|+ +|+++++... ..+.++.++.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~ 47 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI 47 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence 58999988 9999999998888899 8999987442 3344555544
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.38 E-value=0.13 Score=44.19 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.++|+|+|||..|+.++..+...|. +|.+++.++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence 5789999999999999999998898 8999977654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=90.30 E-value=0.35 Score=40.29 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++|||+|+ |-+|..++..+...|. +|++++++.
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence 67999998 9999999999999999 899988754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.30 E-value=0.15 Score=37.25 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.++++|+|+|.+|+=+++.++.+|. +|..+.+++.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE 59 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence 4899999999999999999999999 8999977654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.27 E-value=0.21 Score=36.53 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.++++|+|+|.+|+=+++..+.+|. +|..+...+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence 5899999999999999999999999 899996654
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=90.10 E-value=0.12 Score=39.08 Aligned_cols=84 Identities=10% Similarity=-0.059 Sum_probs=51.2
Q ss_pred EEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHHHH
Q 016978 199 AVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVM 278 (379)
Q Consensus 199 lI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~~~ 278 (379)
=++|+|.+|...+..++..+. .+.+.+++.++.+.+.+.+.....+..+ . -...|+||=|+.. +.+
T Consensus 3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~-----------~-~~~~DiVil~v~d-~~i 68 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK-----------H-PELNGVVFVIVPD-RYI 68 (153)
T ss_dssp EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC-----------C-CC---CEEECSCT-TTH
T ss_pred EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh-----------h-hccCcEEEEeccc-hhh
Confidence 357999999998877655333 4456789999988887766543332222 1 1257999999877 557
Q ss_pred HHHHHHhccCCceEEEEc
Q 016978 279 RAALECCHKGWGTSVIVG 296 (379)
Q Consensus 279 ~~~~~~l~~~~G~iv~~g 296 (379)
...+..++.....++.++
T Consensus 69 ~~v~~~l~~~~~ivi~~s 86 (153)
T d2i76a2 69 KTVANHLNLGDAVLVHCS 86 (153)
T ss_dssp HHHHTTTCCSSCCEEECC
T ss_pred hHHHhhhcccceeeeecc
Confidence 778888875413444443
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=90.02 E-value=1.6 Score=33.41 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHHhcCCce--------------EeCCCCCCchHHHHHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTE--------------FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~---~~~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~i~~ 259 (379)
+|.|.|-|-+|.++...+....--+++++.. +.+.+.++-++-..+ +++...-.-.-.....+
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~~ 82 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK 82 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChhh
Confidence 6889999999999998877665327777743 335555554432211 11110000000000112
Q ss_pred hcC-C-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 260 LTD-G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 260 ~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
... . ++|+|+||+|.-.....+...+..+ .+-|++..+..
T Consensus 83 i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP~~ 124 (169)
T d1u8fo1 83 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPSA 124 (169)
T ss_dssp CCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSCCS
T ss_pred CCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccccc
Confidence 222 3 8999999999855566666778876 66677766543
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=90.00 E-value=1.3 Score=33.97 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=57.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCC---eEEEEcC--ChhHHHHHHhcCCce--------------EeCCCCCCchHHHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGAS---RVIGIDI--DPKKFDRAKNFGVTE--------------FVNPKDHDKPIQQVL 257 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~---~vi~v~~--~~~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~i 257 (379)
+|.|.|-|-+|.++.+.+...+.. .|+++.. +.+.+.++.++...+ +++...-.-......
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p 82 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNP 82 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCH
Confidence 578999999999999877654321 5666653 334444544332211 111000000000001
Q ss_pred HHhc-CC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 258 VDLT-DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 258 ~~~~-~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.++. .. ++|+|+||+|.-.....+...|..+ .+-|++..+.
T Consensus 83 ~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~ 125 (173)
T d1obfo1 83 AQLPWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG 125 (173)
T ss_dssp GGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred HHCcccccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence 1222 23 8999999999855566677777776 6667776543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.17 Score=43.23 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++..+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 456789999999999999999999999 899997654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.94 E-value=1.9 Score=31.90 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=30.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF 232 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~ 232 (379)
.+|.|+|+|.+|..++..+...+. ..++.++..+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~ 39 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV 39 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 368888999999999888888874 5799999888654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.80 E-value=0.18 Score=42.79 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-C--hHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 194 PGSIVAVFGL-G--TVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 194 ~g~~VlI~Ga-g--~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
+|+++||+|+ | ++|.+.++.+...|+ +|+...++++
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~ 45 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA 45 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence 6899999997 5 799999999999999 8888877654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.73 E-value=0.19 Score=42.49 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
-.|.+|+|.|-|.||..+++.+...|+ +|++++.
T Consensus 34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vsD 67 (293)
T d1hwxa1 34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVGE 67 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEc
Confidence 468999999999999999999999999 8888863
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=89.70 E-value=0.61 Score=36.01 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=37.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGV 240 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~ 240 (379)
+|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~ 45 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA 45 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence 37788999999998888888899 89999999999888876554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.63 E-value=0.39 Score=35.16 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=50.2
Q ss_pred hhhccCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 186 VWNTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~-Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+++.+++..-+.+++. ..-..-+++.++++.+|..++++...+++..+.++++|++.++++.
T Consensus 57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~ 119 (132)
T d1lssa_ 57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119 (132)
T ss_dssp HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence 4566777777777765 4455677889999999998899988899999999999999998753
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.62 E-value=0.82 Score=35.41 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=48.0
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHhcCCceEeCCC--C----CCchHHHHHHHhcCCCccEE
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK--KFDRAKNFGVTEFVNPK--D----HDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~--~~~~~~~lg~~~v~~~~--~----~~~~~~~~i~~~~~~g~d~v 268 (379)
+|.|+|+|..|.+.+..+..-|. +|....+..+ ..+.+.+..-...+... . ...+..+.+ ...|+|
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~ad~I 75 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-----ENAEVV 75 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-----TTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-----hccchh
Confidence 58899999999998888888888 8888866433 23333221110000000 0 012333332 258999
Q ss_pred EEcCCCHHHHHHHHHHhcc
Q 016978 269 FECIGNVSVMRAALECCHK 287 (379)
Q Consensus 269 id~~g~~~~~~~~~~~l~~ 287 (379)
+.++.+.. +...++.+.+
T Consensus 76 i~avps~~-~~~~~~~l~~ 93 (180)
T d1txga2 76 LLGVSTDG-VLPVMSRILP 93 (180)
T ss_dssp EECSCGGG-HHHHHHHHTT
T ss_pred hcccchhh-hHHHHHhhcc
Confidence 99998843 5555554433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=89.54 E-value=0.28 Score=41.25 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcC-----C--c---eEeCCCCCCchHHHHHHHhcCC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFG-----V--T---EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg-----~--~---~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
.-++|||+|.|. |..+..+++..+.++|.+++.+++-.+.++++. + + .++. .+..+.+++ +..
T Consensus 75 ~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~-----~D~~~~l~~-~~~ 147 (274)
T d1iy9a_ 75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV-----DDGFMHIAK-SEN 147 (274)
T ss_dssp SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE-----SCSHHHHHT-CCS
T ss_pred CcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe-----chHHHHHhh-cCC
Confidence 458999997753 455566777777779999999999888887753 1 0 1221 233344544 334
Q ss_pred CccEEE-EcCC---------CHHHHHHHHHHhccCCceEEEEc
Q 016978 264 GVDYSF-ECIG---------NVSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 264 g~d~vi-d~~g---------~~~~~~~~~~~l~~~~G~iv~~g 296 (379)
.+|+|+ |... +.++.+.+.+.|+++ |.++.-.
T Consensus 148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~ 189 (274)
T d1iy9a_ 148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT 189 (274)
T ss_dssp CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence 899987 4322 246789999999996 9998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.52 E-value=0.23 Score=38.14 Aligned_cols=36 Identities=36% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v~~~~ 229 (379)
.|++|+|+|+|..|+-+++-++.++.. +|+.++..+
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 479999999999999998888888853 788886654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=89.40 E-value=0.17 Score=41.85 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=29.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|+|+|+|+.|++++..+...|. +|++++.+++
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 47889999999999999999998 8999987754
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=89.34 E-value=2.8 Score=31.61 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHH
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKF 232 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~ 232 (379)
..+..+|.|+|+|.+|..++..+...|. .+++.++.++++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a 58 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL 58 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence 4456799999999999999999998884 6899999887653
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.29 E-value=1.9 Score=33.19 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEE-cCChhHHH-HHHhcCCce---EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 197 IVAVFGLGTVGLAVAEGAKAA-GASRVIGI-DIDPKKFD-RAKNFGVTE---FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~-g~~~vi~v-~~~~~~~~-~~~~lg~~~---v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
+|.|+|+|.+|...++.++.. +. +++++ +.++++.+ ++++++... ++ .++.+.+.. ..+|+|+-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~ll~~---~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH------GSYESLLED---PEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE------SSHHHHHHC---TTCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec------CcHHHhhhc---cccceeee
Confidence 578999999998888888776 45 66654 66666644 445565421 22 233333332 26999999
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEcc
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
++....-...+..++.. |.=|.+..
T Consensus 73 ~tp~~~h~~~~~~~l~~--g~~v~~EK 97 (184)
T d1ydwa1 73 PLPTSLHVEWAIKAAEK--GKHILLEK 97 (184)
T ss_dssp CCCGGGHHHHHHHHHTT--TCEEEECS
T ss_pred cccchhhcchhhhhhhc--cceeeccc
Confidence 98887777888887777 55565644
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=89.22 E-value=0.18 Score=41.38 Aligned_cols=31 Identities=42% Similarity=0.527 Sum_probs=27.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
|+|+|+|+.|+.++..+...|. +|+.++..+
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~ 35 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN 35 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 7889999999998888888999 899998764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.17 E-value=1.7 Score=31.21 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=59.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCCHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVS 276 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~~~ 276 (379)
.|+|.|.|.+|..++..++ +. .+++++.++++.+.++..|...++ -+. .-.+.+++..-..++.++-++....
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~-Gd~---~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVH-GDP---TRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEE-SCT---TSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccc-ccc---CCHHHHHHhhhhcCcEEEEeccchh
Confidence 5788899999998877664 44 678888999998988888875543 222 1234455543347888888777633
Q ss_pred ---HHHHHHHHhccCCceEEEE
Q 016978 277 ---VMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 277 ---~~~~~~~~l~~~~G~iv~~ 295 (379)
.+-...+.+.+. .+++..
T Consensus 75 ~n~~~~~~~r~~~~~-~~iia~ 95 (129)
T d2fy8a1 75 ETIHCILGIRKIDES-VRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHHCSS-SCEEEE
T ss_pred hhHHHHHHHHHHCCC-ceEEEE
Confidence 233344455664 555544
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.15 E-value=0.23 Score=36.12 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=28.3
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
++++|+|+|.+|+=.+++++.+|. +|..+.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence 679999999999999999999999 77777553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.62 Score=39.18 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc--eEeCCCCC---CchHHHHHHHhcCCCccEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT--EFVNPKDH---DKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~--~v~~~~~~---~~~~~~~i~~~~~~g~d~v 268 (379)
.-++|||+|.|. |..+-.+++..+..+|++++-+++-.+.++++... ..+..... ..|..+.+++ +.+.+|+|
T Consensus 78 ~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yDvI 155 (285)
T d2o07a1 78 NPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVI 155 (285)
T ss_dssp SCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEEE
T ss_pred CcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-CCCCCCEE
Confidence 348999997743 44555677777777999999999988888765310 00000000 1234455554 33489987
Q ss_pred E-EcCCC---------HHHHHHHHHHhccCCceEEEEcc
Q 016978 269 F-ECIGN---------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 269 i-d~~g~---------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+ |.... .++++.+.+.|+++ |.++.-+.
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~ 193 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQGE 193 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence 7 43221 35688889999997 99887643
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=89.13 E-value=0.21 Score=39.68 Aligned_cols=37 Identities=41% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
-.|++|.|+|.|.+|...+++++.+|+ +|++.++...
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~ 83 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS 83 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred eeCceEEEeccccccccceeeeecccc-ceeeccCccc
Confidence 468999999999999999999999999 8999877543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.90 E-value=0.32 Score=38.70 Aligned_cols=40 Identities=38% Similarity=0.633 Sum_probs=35.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+|.|+|+|-+|+.++..+...|. +|+++|.++++.+.+.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~ 41 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ 41 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence 57889999999998888888899 99999999999888764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.80 E-value=0.96 Score=38.82 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 194 PGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
+-++|||+|+ |.+|..++..+...|+ +|+++.++..+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~ 39 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKG 39 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcch
Confidence 4578999988 9999999999999999 88888776543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.79 E-value=0.29 Score=35.49 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
..+++|+|+|+|.+|+-+++.+..+|. +|..+.+++
T Consensus 30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~ 65 (122)
T d1xhca2 30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA 65 (122)
T ss_dssp HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence 345899999999999999999999999 898887654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=88.79 E-value=0.18 Score=41.89 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
--.|.+|+|.|.|.+|..+++.+..+|+ +|++++.
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLSG 67 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 3478999999999999999999999999 8888753
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.78 E-value=0.11 Score=45.56 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
+|||+|+ |-+|..++..+...|+..|++++.
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 6999988 999999999888889866777764
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=88.66 E-value=1.4 Score=37.39 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=66.4
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHhcCCceEeCCCC-----------------
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRAKNFGVTEFVNPKD----------------- 248 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~--~~~~~~~~~~lg~~~v~~~~~----------------- 248 (379)
+...+.+++.|+...+|.-|++++..|+..|.+-++.+.. ++.|.+.++.+|+..+.....
T Consensus 54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~ 133 (310)
T d1y7la1 54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD 133 (310)
T ss_dssp HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence 4455678887777677999999999999999965555543 456888888999865531110
Q ss_pred -----------CCc-------hHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhc
Q 016978 249 -----------HDK-------PIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCH 286 (379)
Q Consensus 249 -----------~~~-------~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 286 (379)
+.. ....++.+..++.+|.|+-+.|+..++.-....++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk 189 (310)
T d1y7la1 134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK 189 (310)
T ss_dssp TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence 001 12234444545578999999888766666665554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=88.61 E-value=0.22 Score=40.30 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCCccEE
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGGVDYS 268 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g~d~v 268 (379)
+..++++||=+|+| .|..+..+++ .|. +|++++.+++..+.+++...+. ++..+. .++ ..++.||+|
T Consensus 17 ~~~~~~~VLDiGcG-~G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~--~~~------~~~~~fD~I 85 (225)
T d2p7ia1 17 PFFRPGNLLELGSF-KGDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF--EDA------QLPRRYDNI 85 (225)
T ss_dssp GGCCSSCEEEESCT-TSHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG--GGC------CCSSCEEEE
T ss_pred hhCCCCcEEEEeCC-CcHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc--ccc------ccccccccc
Confidence 34457789999885 3655655554 577 8999999999999998653322 222211 111 113379998
Q ss_pred EEcC-----CC-HHHHHHHH-HHhccCCceEEEE
Q 016978 269 FECI-----GN-VSVMRAAL-ECCHKGWGTSVIV 295 (379)
Q Consensus 269 id~~-----g~-~~~~~~~~-~~l~~~~G~iv~~ 295 (379)
+-.- .. ...+..+. ++|+++ |.++..
T Consensus 86 ~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~ 118 (225)
T d2p7ia1 86 VLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV 118 (225)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred cccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence 8421 11 23455665 578996 887754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.49 E-value=0.22 Score=40.20 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence 37888999999999999989998 899998864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=88.46 E-value=0.58 Score=38.38 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCc-e--EeCCCCCCchHHHHHHHh-cCC
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVT-E--FVNPKDHDKPIQQVLVDL-TDG 263 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~-~--v~~~~~~~~~~~~~i~~~-~~~ 263 (379)
.+++++||=+|+|. |..+..+++. |..+|+++|.+++.++.+++ .+.. . ++..+.... .. .++
T Consensus 22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~-------~~~~~~ 92 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-------HMDLGK 92 (252)
T ss_dssp CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-------CCCCSS
T ss_pred CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh-------cccccc
Confidence 57899999998864 5556667665 54489999999998887764 3322 1 111111000 11 123
Q ss_pred CccEEEEcCCC----------HHHHHHHHHHhccCCceEEEE
Q 016978 264 GVDYSFECIGN----------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 g~d~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.||+|+-...- ...+..+.+.|+++ |.++..
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~ 133 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT 133 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence 79998754222 13566777889997 998753
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.24 E-value=0.15 Score=42.66 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=28.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+|+|+|+|..|+.++..+...|. +|++++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 48999999999999999999999 899997754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=88.00 E-value=2.2 Score=33.59 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred hhhhhhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HhcCCceE--eCCCCCCchHHH
Q 016978 182 GLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRA----KNFGVTEF--VNPKDHDKPIQQ 255 (379)
Q Consensus 182 a~~~l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~----~~lg~~~v--~~~~~~~~~~~~ 255 (379)
-|.+++.. .+..||=+|+| .|..++.+|+..--..+++++.++.....+ ++.|.+.+ +..+. ..+
T Consensus 21 ~w~~~F~~----~~PlvLeIGcG-~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da--~~l-- 91 (204)
T d2fcaa1 21 KWNTVFGN----DNPIHIEVGTG-KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTL-- 91 (204)
T ss_dssp CHHHHHTS----CCCEEEEECCT-TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGH--
T ss_pred HHHHHcCC----CCceEEEEEec-CcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch--hhh--
Confidence 35555543 23455667886 588888899987444999999998876554 34566533 22221 222
Q ss_pred HHHHhcCCCccEEEEcCCC--------------HHHHHHHHHHhccCCceEEEE
Q 016978 256 VLVDLTDGGVDYSFECIGN--------------VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~ 295 (379)
...+.++.+|.|+-.... +..+..+.+.|+++ |.+.+.
T Consensus 92 -~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~ 143 (204)
T d2fcaa1 92 -TDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFK 143 (204)
T ss_dssp -HHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEE
T ss_pred -hcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEE
Confidence 223334478877744332 36899999999997 998776
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=87.87 E-value=0.93 Score=38.25 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=63.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCc----------eEeCCCCCCchHHHHHHHhcCCC
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVT----------EFVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~----------~v~~~~~~~~~~~~~i~~~~~~g 264 (379)
-++|||+|.|. |..+-.+++..+..+|.+++.+++-.+.++++... .++. .+..+.+++ +.+.
T Consensus 90 pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-----~Da~~~l~~-~~~~ 162 (295)
T d1inla_ 90 PKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-----ANGAEYVRK-FKNE 162 (295)
T ss_dssp CCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHGGG-CSSC
T ss_pred CceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-----hhHHHHHhc-CCCC
Confidence 48999997743 34455677777766899999999988888774311 1111 234455554 3348
Q ss_pred ccEEE-EcCC----------CHHHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSF-ECIG----------NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vi-d~~g----------~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|+|| |+.. +.+++..+.+.|+++ |.++.-..
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~ 205 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE 205 (295)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence 99877 4321 246788999999997 99987643
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.55 Score=40.37 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=27.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEc
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGASRVIGID 226 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~ 226 (379)
++|||+|+ |-+|..++..+...|. +|++++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld 33 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID 33 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence 78999988 9999999999999998 888885
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=87.77 E-value=1.4 Score=33.80 Aligned_cols=97 Identities=20% Similarity=0.332 Sum_probs=60.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHHhcCCce--------------EeCCCC----CCchHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI---DPKKFDRAKNFGVTE--------------FVNPKD----HDKPIQQ 255 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~---~~~~~~~~~~lg~~~--------------v~~~~~----~~~~~~~ 255 (379)
+|.|.|-|-+|.++.+.+...+. .++++.. +.+.+.++-++-..+ +++.+. ...+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~--- 77 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK--- 77 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS---
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC---
Confidence 57899999999999999988888 6777743 234555554432211 111000 0000
Q ss_pred HHHHhc-CC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 256 VLVDLT-DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 256 ~i~~~~-~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
..++. .. ++|+|+||+|--.....+...+..+ .+-|++..+.
T Consensus 78 -p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~ 121 (169)
T d1dssg1 78 -PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPS 121 (169)
T ss_dssp -GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCC
T ss_pred -hHHCCccccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCc
Confidence 11111 12 8999999999866667777888886 7777776654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=87.72 E-value=0.13 Score=40.46 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
+++..|+|+|+|+.|+.++..+..+|. +|+.+++..
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~ 38 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME 38 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence 356789999999999999999999999 788886543
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=87.66 E-value=1.6 Score=33.44 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=56.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcC---CCeEEEEcC--ChhHHHHHHhcCCce--------------EeCCCCC---CchHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAG---ASRVIGIDI--DPKKFDRAKNFGVTE--------------FVNPKDH---DKPIQ 254 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g---~~~vi~v~~--~~~~~~~~~~lg~~~--------------v~~~~~~---~~~~~ 254 (379)
+|.|.|-|-+|.++.+.+.... . +|+++.. +.+.+.++-++-..+ +++.+.- ...
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~-- 78 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEP-- 78 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCS--
T ss_pred EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCC--
Confidence 6889999999999998877542 4 7777743 334454444332200 1110000 000
Q ss_pred HHHHHhcC-C-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 255 QVLVDLTD-G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 255 ~~i~~~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
...++.. . ++|+|+||+|--.....+...+..+ -+-|++..+.
T Consensus 79 -~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~ 123 (169)
T d1hdgo1 79 -DPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPA 123 (169)
T ss_dssp -SGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred -ChhhCCccccCCCEEEEecceeccccchhhhccCC-CceEEEeccc
Confidence 0111111 2 7999999999855566777777775 6556665544
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=87.60 E-value=0.52 Score=35.68 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKF 232 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~ 232 (379)
++-.+|.|+|+|.+|..++.++...+...++.++.++++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~ 44 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP 44 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence 4457899999999999888888888866899998877653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.78 Score=38.16 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHc-----CC-CeEEEEcCChhHHHHHHhcCCc------eEeCCCCCC-chHHHHH
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAA-----GA-SRVIGIDIDPKKFDRAKNFGVT------EFVNPKDHD-KPIQQVL 257 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~-----g~-~~vi~v~~~~~~~~~~~~lg~~------~v~~~~~~~-~~~~~~i 257 (379)
..++.-+||=+|+| .|..+..+++.+ +. .++++++.++.-++.+++.-.. ..++....+ ..+....
T Consensus 37 ~~~~~~~VLDiGcG-~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 37 DTKSEIKILSIGGG-AGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp TTCSEEEEEEETCT-TSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred cCCCCCeEEEEcCC-CCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchh
Confidence 34555589989874 233444443322 22 1578999998887777653111 112211100 1122222
Q ss_pred HHh-cCCCccEEEEcCC-----C-HHHHHHHHHHhccCCceEEEEcc
Q 016978 258 VDL-TDGGVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 258 ~~~-~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
... ..+.||+|+-.-. . ..++..+.++|+++ |.++....
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~ 161 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV 161 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence 222 2338999986322 1 46789999999997 98876643
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.49 E-value=0.25 Score=39.55 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
-|+|+|+|+.|+.++..+..+|. +|++++..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~ 35 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR 35 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence 47888999999999999999999 88888764
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=87.30 E-value=0.29 Score=41.64 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=29.6
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
=.|+|+|||..|++++..++..|. .+++++..++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence 358999999999999999999999 8999987643
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.25 E-value=0.43 Score=37.61 Aligned_cols=39 Identities=36% Similarity=0.436 Sum_probs=33.2
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+|.|+|.|-+|+..+.++ +.|. +|+++|.++++.+.+++
T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~ 40 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN 40 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence 578899999999877666 4699 99999999999888764
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.12 E-value=0.9 Score=33.10 Aligned_cols=71 Identities=14% Similarity=0.308 Sum_probs=47.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEE-EcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIG-IDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~-v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|.|+|+ |-+|+...+++...+. .+++ ++.+.. .. -..+|+++|.+..
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~--------------------~~---------~~~~DVvIDFS~p 51 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV--------------------EE---------LDSPDVVIDFSSP 51 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE--------------------EE---------CSCCSEEEECSCG
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH--------------------HH---------hccCCEEEEecCH
Confidence 5889998 9999999999999888 4544 322110 00 0247999998776
Q ss_pred HHHHHHHHHHhccCCceEEEEccCC
Q 016978 275 VSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 275 ~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.. ....++.+... +.=+.+|...
T Consensus 52 ~~-~~~~l~~~~~~-~~p~ViGTTG 74 (128)
T d1vm6a3 52 EA-LPKTVDLCKKY-RAGLVLGTTA 74 (128)
T ss_dssp GG-HHHHHHHHHHH-TCEEEECCCS
T ss_pred HH-HHHHHHHHHhc-CCCEEEEcCC
Confidence 44 55555555553 6667777754
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=86.77 E-value=0.82 Score=34.96 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=57.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHhcCCce--------------EeCCCCCCchHHHHHHHh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP--KKFDRAKNFGVTE--------------FVNPKDHDKPIQQVLVDL 260 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~--~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~i~~~ 260 (379)
+|.|.|-|-+|.++.+.+....--+++++.... +.+.++-++-..+ +++...-.-.......++
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~i 82 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANL 82 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGG
T ss_pred EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHHC
Confidence 578899999999999988876422677775432 3333443322110 111100000000001111
Q ss_pred c-CC-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 261 T-DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 261 ~-~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
. .. ++|+|+||+|--.....+...+..+ .+-|++..+..
T Consensus 83 ~W~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~~ 123 (166)
T d1gado1 83 KWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK 123 (166)
T ss_dssp CHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred CccccCCCEEEEccccccCHHHHHHHhcCC-CceEEeecccc
Confidence 1 12 7999999999755566777778776 66677765543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=86.73 E-value=0.29 Score=37.84 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=26.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCC-eEEEE
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGAS-RVIGI 225 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~-~vi~v 225 (379)
++++|+|+|+|.+|+-++..++.+|++ +|+.+
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~ 34 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV 34 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence 578999999999999999999999984 34444
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=86.73 E-value=0.31 Score=37.63 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=26.9
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
.|+|+|+|+.|+.++..|...|. +|+.++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~ 32 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE 32 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence 58899999999999999999999 7888864
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=86.64 E-value=1.3 Score=35.49 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=56.4
Q ss_pred EEEEEcCChHHH-HHHHHHHHc-CCCeEEE-EcCChhHHH-HHHhcCCce--EeCCCCCCchHHHHHHHhcCC-CccEEE
Q 016978 197 IVAVFGLGTVGL-AVAEGAKAA-GASRVIG-IDIDPKKFD-RAKNFGVTE--FVNPKDHDKPIQQVLVDLTDG-GVDYSF 269 (379)
Q Consensus 197 ~VlI~Gag~vG~-~a~~la~~~-g~~~vi~-v~~~~~~~~-~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~-g~d~vi 269 (379)
+|.|+|+|.+|. ..+...+.. +. ++++ +++++++.+ .++++|.+. +..+++ +.++.+. .+|+|+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d--------~~ell~~~~iD~V~ 105 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN--------FDKIAKDPKIDAVY 105 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS--------GGGGGGCTTCCEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc--------hhhhcccccceeee
Confidence 678899999986 344444443 56 5664 566777644 455666532 333333 1222223 799999
Q ss_pred EcCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 270 ECIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 270 d~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
-++........+..++.. |.=|++..+
T Consensus 106 I~tp~~~H~~~~~~al~~--gk~v~~EKP 132 (221)
T d1h6da1 106 IILPNSLHAEFAIRAFKA--GKHVMCEKP 132 (221)
T ss_dssp ECSCGGGHHHHHHHHHHT--TCEEEECSS
T ss_pred eccchhhhhhHHHHhhhc--chhhhcCCC
Confidence 998886667777887776 566666543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=1 Score=37.79 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEc-C-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCceEe-CCCCCCchHHHHHHHhcC
Q 016978 190 AKVEPGSIVAVFG-L-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTEFV-NPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 190 ~~~~~g~~VlI~G-a-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~v~-~~~~~~~~~~~~i~~~~~ 262 (379)
...++|++||=.- | |+=.. ++|..+.-.+|++++.++.|...++ .+|...+. ...+ .... .....
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~---~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~--~~~~---~~~~~ 169 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTT---HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG--RYPS---QWCGE 169 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHH---HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT--TCTH---HHHTT
T ss_pred cCccccceeEeccCccccchh---hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc--cccc---hhccc
Confidence 3578999999883 3 54444 3333444348999999999876554 57775432 2222 1111 11223
Q ss_pred CCccEEE-E--cCCC-------------------------HHHHHHHHHHhccCCceEEEEc
Q 016978 263 GGVDYSF-E--CIGN-------------------------VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 263 ~g~d~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+.||.|+ | |+|. ...+..++..++++ |++|+.-
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsT 230 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYAT 230 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEee
Confidence 4799766 5 5555 13477788889996 8888653
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.54 E-value=0.63 Score=35.15 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.-+++|+|+|+|.+|.=.+..+..+|++.|+.+.+.
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence 346789999999999999999999999778787553
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.51 E-value=0.57 Score=37.13 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=42.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 196 SIVAVFGL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 196 ~~VlI~Ga-g~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
++|||+|+ |-+|..++..+...|. .+|++..+++.. .... + .... .++.+.... .....|.|++|+|
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~------~~~~-~-~~~~--~d~~~~~~~-~~~~~d~vi~~~g 71 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHPR-L-DNPV--GPLAELLPQ-LDGSIDTAFCCLG 71 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCTT-E-ECCB--SCHHHHGGG-CCSCCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh------hccc-c-cccc--cchhhhhhc-cccchheeeeeee
Confidence 79999998 9999999998888886 256665543221 0011 1 1111 234333332 3337899999987
Q ss_pred C
Q 016978 274 N 274 (379)
Q Consensus 274 ~ 274 (379)
.
T Consensus 72 ~ 72 (212)
T d2a35a1 72 T 72 (212)
T ss_dssp C
T ss_pred e
Confidence 6
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=0.28 Score=41.67 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|||+|||..|+.++..+...|. +|.+++.++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence 58899999999999999988898 8999977543
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=0.3 Score=39.01 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=27.6
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+|+|+|+.|+.++..|..+|. +|..++..
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 37889999999999999999999 88888764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.60 E-value=0.37 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+|+|+|+.|+.++..|..+|. +|+.++..
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 47888999999999999999999 89999754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=85.47 E-value=0.29 Score=42.12 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEEEcCChHHHHHHHHHH-----HcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAK-----AAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~-----~~g~~~vi~v~~~~ 229 (379)
.|+|+|+|++|+++++++. ..|. +|+++++.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence 4899999999999777763 4688 899997653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.38 E-value=1.1 Score=33.47 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCCEEEEEcC--ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhcCCC
Q 016978 194 PGSIVAVFGL--GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 194 ~g~~VlI~Ga--g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~~~g 264 (379)
.|.+||=+++ |.+|+.| ..+|+++|+.++.+++..+.+++ ++... ++. .+..+.+.. ..+.
T Consensus 14 ~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~-----~D~~~~l~~-~~~~ 83 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK-----MEAERAIDC-LTGR 83 (152)
T ss_dssp CSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC-----SCHHHHHHH-BCSC
T ss_pred CCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc-----ccccccccc-cccc
Confidence 6888888754 6666633 34788899999999887666553 55432 222 234444433 3458
Q ss_pred ccEEEE
Q 016978 265 VDYSFE 270 (379)
Q Consensus 265 ~d~vid 270 (379)
+|+||-
T Consensus 84 fDiIf~ 89 (152)
T d2esra1 84 FDLVFL 89 (152)
T ss_dssp EEEEEE
T ss_pred cceeEe
Confidence 999884
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.32 E-value=0.35 Score=41.37 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
|+|+|+|..|+.++..++..|. +|++++.++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 7889999999999999999999 899997644
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=85.23 E-value=0.41 Score=39.55 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.8
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.|+|+|+|.+|+.++.-+...|. +|++++..+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 48999999999998888888898 899998753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=85.20 E-value=0.9 Score=34.12 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhH
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKK 231 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~ 231 (379)
|..+|.|+|+|.+|...+.++...+...++.++..+++
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~ 39 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM 39 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence 56789999999999998888888888789999887755
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=84.87 E-value=1.5 Score=36.26 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=42.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEcCC
Q 016978 198 VAVFGL-GTVGLAVAEGAKAAGASRVIGIDI--DPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIG 273 (379)
Q Consensus 198 VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~--~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~~g 273 (379)
|||+|+ |-+|..++..+...|..+|+++++ ...+.....+.......+. .++...+.....- ..+.++.+++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK----EDFLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH----HHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc----hHHHHHHhhhhcccchhhhhhhcc
Confidence 799988 999999888888889757888853 2223333344433222221 2333333332233 6788887654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.68 E-value=0.45 Score=38.15 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.|+|+|+|+.|+.++..|..+|. +|+.++..+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence 47889999999999988889999 888887643
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.68 E-value=0.82 Score=39.14 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=28.8
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
-++|||+|+ |-+|..++..+...|. +|+++++
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence 378999988 9999999999999999 8999874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.63 E-value=2.6 Score=35.63 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH----hcCCceEeCCCCCCchHHHHHHHhcC
Q 016978 190 AKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 190 ~~~~~g~~VlI~-Ga-g~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
..+++|++||=. +| |+- +.+++..++. ..+++.+.+++|...++ .+|...++........+ ....
T Consensus 112 l~~~~g~~vlD~CAapGgK---t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-----~~~~ 183 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGK---TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-----GELN 183 (313)
T ss_dssp HCCCTTCEEEECCSSCSHH---HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-----GGGC
T ss_pred ccCCccceeeecccchhhh---hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-----cccc
Confidence 357899999877 33 533 3345555542 37999999999876654 57776554333211111 1223
Q ss_pred CCccEEE-E--cCCC-------------------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 263 GGVDYSF-E--CIGN-------------------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 263 ~g~d~vi-d--~~g~-------------------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.||.|+ | |+|. ...+..++.+++++ |++|+.-.
T Consensus 184 ~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsTC 245 (313)
T d1ixka_ 184 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC 245 (313)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEeec
Confidence 4788766 4 5554 23578888999996 98886643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=84.56 E-value=1.2 Score=34.86 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEc
Q 016978 192 VEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFEC 271 (379)
Q Consensus 192 ~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~ 271 (379)
+.++++||=+|+| .|..+..+ . ++++++.+++-.+.+++.+...+. .+. .++ ...++.||+|+..
T Consensus 34 ~~~~~~vLDiGcG-~G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~-~d~--~~l-----~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 34 LLPEGRGVEIGVG-TGRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLK-GTA--ENL-----PLKDESFDFALMV 98 (208)
T ss_dssp HCCSSCEEEETCT-TSTTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEE-CBT--TBC-----CSCTTCEEEEEEE
T ss_pred hCCCCeEEEECCC-Cccccccc-----c-eEEEEeCChhhccccccccccccc-ccc--ccc-----ccccccccccccc
Confidence 4567789999885 24444333 2 578999999999999987654332 221 111 1122379999864
Q ss_pred CC-----C-HHHHHHHHHHhccCCceEEEEcc
Q 016978 272 IG-----N-VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 272 ~g-----~-~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.. . ...++.+.+.|+++ |+++....
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~ 129 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILKKG-GYLIVGIV 129 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred cccccccccccchhhhhhcCCCC-ceEEEEec
Confidence 22 1 35689999999997 99886643
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=84.37 E-value=0.32 Score=40.56 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=36.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGN 274 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g~ 274 (379)
+|||+|+ |-+|..++..+...|. +++++..... +- .|..+ ...+.+.++.. ++|+||++++.
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~------~~----~Dl~~-~~~~~~~i~~~---~~D~Vih~Aa~ 64 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE------FC----GDFSN-PKGVAETVRKL---RPDVIVNAAAH 64 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS------SC----CCTTC-HHHHHHHHHHH---CCSEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc------cc----CcCCC-HHHHHHHHHHc---CCCEEEEeccc
Confidence 6999988 9999998887776664 5555443321 11 12211 12222333322 68999998863
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.36 E-value=5.9 Score=29.27 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHhcCCc-----------eEeCCCCCCchHHHHHHHhcCC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPK-KFDRAKNFGVT-----------EFVNPKDHDKPIQQVLVDLTDG 263 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~-~~~~~~~lg~~-----------~v~~~~~~~~~~~~~i~~~~~~ 263 (379)
++|-++|.|.+|...+.-+...|. .++ ..++.+ ..++.++.+.. .++..-............+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~ 78 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARRFP-TLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY 78 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTTSC-EEE-ECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCC-EEE-EeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccc
Confidence 468889999999887776666666 554 445444 44455444431 1111111012222222233322
Q ss_pred --CccEEEEcCCC-HHHHHHHHHHhccCCceEEEE
Q 016978 264 --GVDYSFECIGN-VSVMRAALECCHKGWGTSVIV 295 (379)
Q Consensus 264 --g~d~vid~~g~-~~~~~~~~~~l~~~~G~iv~~ 295 (379)
.-.+++|++.. ++...++.+.++....+++..
T Consensus 79 ~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda 113 (156)
T d2cvza2 79 LREGTYWVDATSGEPEASRRLAERLREKGVTYLDA 113 (156)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred ccccccccccccCCHHHHHHHHHHHHHcCCeEEec
Confidence 34566665443 455566666666542444444
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.31 E-value=0.5 Score=37.58 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
|+|+|+|+.|+.++..|...|. +|+.++..
T Consensus 6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~ 35 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG 35 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence 6788999999999999999999 88888654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=0.5 Score=39.23 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
+...|++||=+|+|+ |...+..+...+. +|++++.++.-++.+++
T Consensus 51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR 95 (263)
T ss_dssp SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence 345689999999865 4444444444444 89999999998888875
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.06 E-value=0.67 Score=36.32 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
.+.+|.|+|.|.+|...+++++.+|. +|++.++..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~ 77 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN 77 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence 57899999999999999999999999 899997653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.98 E-value=0.53 Score=37.90 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=28.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
-|+|+|+|+.|+.++..|..+|. +|+.++..+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 47888999999999999999999 899997643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.92 E-value=3 Score=32.45 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=62.7
Q ss_pred hhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhc----CCce-EeCCCCCCchHHHHHHHhc
Q 016978 187 WNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNF----GVTE-FVNPKDHDKPIQQVLVDLT 261 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~l----g~~~-v~~~~~~~~~~~~~i~~~~ 261 (379)
.+...+++|+.+|=.+.|+=|+. -.+++...-.+|+++|.+++.++.+++. +... +++.+- .++...+....
T Consensus 16 i~~l~~~~~~~~lD~t~G~Gghs-~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--~~~~~~~~~~~ 92 (192)
T d1m6ya2 16 IEFLKPEDEKIILDCTVGEGGHS-RAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READFLLKTLG 92 (192)
T ss_dssp HHHHCCCTTCEEEETTCTTSHHH-HHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHHHHHHHTT
T ss_pred HHhhCCCCCCEEEEecCCCcHHH-HHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH--hhHHHHHHHcC
Confidence 34456788887754333433333 3444444323999999999988888753 3222 233322 45555566654
Q ss_pred CCCccEEE-EcCCC--------------HHHHHHHHHHhccCCceEEEEcc
Q 016978 262 DGGVDYSF-ECIGN--------------VSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 262 ~~g~d~vi-d~~g~--------------~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
.+.+|.|+ |.--+ ...+..+...++++ |+++.+..
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f 142 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISF 142 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEES
T ss_pred CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecc
Confidence 45888764 63211 13466677778886 88776643
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.78 E-value=0.52 Score=38.42 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHH-HHcCCCeEEEEcC
Q 016978 193 EPGSIVAVFGLGTVGLAVAEGA-KAAGASRVIGIDI 227 (379)
Q Consensus 193 ~~g~~VlI~Gag~vG~~a~~la-~~~g~~~vi~v~~ 227 (379)
..|.+|+|.|.|.||..+++.+ +..|+ ++++++.
T Consensus 29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd 63 (234)
T d1b26a1 29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSD 63 (234)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeec
Confidence 4689999999999999999887 56899 8888753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=83.42 E-value=0.32 Score=40.18 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=61.2
Q ss_pred hhhccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----hcCCce-E-eCCCCCCchHHHHHHH
Q 016978 186 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAK----NFGVTE-F-VNPKDHDKPIQQVLVD 259 (379)
Q Consensus 186 l~~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~----~lg~~~-v-~~~~~~~~~~~~~i~~ 259 (379)
+.....++...+||=+|+| .|..+..+++...-.++++++.. +..+.++ +.|... + +...+ + .+
T Consensus 72 ~~~~~d~~~~~~VLDvGcG-~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D----~----~~ 141 (253)
T d1tw3a2 72 PAAAYDWTNVRHVLDVGGG-KGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGD----F----FE 141 (253)
T ss_dssp HHHHSCCTTCSEEEEETCT-TSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECC----T----TS
T ss_pred HHhhcCCccCCEEEEeCCC-CCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhcccc----c----hh
Confidence 3445567788999999886 57788888888753388888863 3333333 334321 1 11111 1 01
Q ss_pred hcCCCccEEEEcCC-----CH---HHHHHHHHHhccCCceEEEEcc
Q 016978 260 LTDGGVDYSFECIG-----NV---SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 260 ~~~~g~d~vid~~g-----~~---~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
..+.++|+|+-..- .+ ..++.+.+.|+|+ |+++....
T Consensus 142 ~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~ 186 (253)
T d1tw3a2 142 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER 186 (253)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred hcccchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence 11237899884321 12 3478889999997 99987643
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.37 E-value=0.45 Score=35.62 Aligned_cols=90 Identities=17% Similarity=0.039 Sum_probs=51.7
Q ss_pred EEEEEcC-ChHHHHHHHHHHHcC--CCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCCCccEEEEcCC
Q 016978 197 IVAVFGL-GTVGLAVAEGAKAAG--ASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIG 273 (379)
Q Consensus 197 ~VlI~Ga-g~vG~~a~~la~~~g--~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~g~d~vid~~g 273 (379)
+|.|+|| |-+|+-.++++...+ ..++..+.++...-+.....+.+..+ . + +......+.|++|-|.+
T Consensus 4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~-~-----~----~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV-G-----D----VDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC-E-----E----GGGCCGGGCSEEEECSC
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh-c-----c----chhhhhccceEEEecCC
Confidence 6889999 999999999997654 23666664443211111111111111 0 0 00111126899999998
Q ss_pred CHHHHHHHHHHhccCCceEEEEcc
Q 016978 274 NVSVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+.......-.....+ .+++..+.
T Consensus 74 ~~~s~~~~~~~~~~g-~~VID~Ss 96 (144)
T d2hjsa1 74 AEVSRAHAERARAAG-CSVIDLSG 96 (144)
T ss_dssp HHHHHHHHHHHHHTT-CEEEETTC
T ss_pred cchhhhhccccccCC-ceEEeech
Confidence 866666666666664 66676654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=83.16 E-value=0.52 Score=39.63 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=26.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+|+|+|.+|++++.-+...|.++|++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 58999999999987777767897579888765
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=83.11 E-value=0.56 Score=39.54 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|||+|+|..|+.++.-|...|+ +|++++..
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~ 48 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKE 48 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 47899999999999999999999 89999754
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=83.04 E-value=9 Score=31.60 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=65.1
Q ss_pred hccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHHhcCCceEeCC-------------------
Q 016978 188 NTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRAKNFGVTEFVNP------------------- 246 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~--~~~~~~~~~~~lg~~~v~~~------------------- 246 (379)
+.....++..|+..++|.-|.+++..++.+|.+-++.+. .++.+.+.++.+|++.+...
T Consensus 54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~ 133 (302)
T d1fcja_ 54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD 133 (302)
T ss_dssp HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence 445567777777667899999999999999985444443 35678888888888543211
Q ss_pred -------CCC--C-------chHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhcc
Q 016978 247 -------KDH--D-------KPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHK 287 (379)
Q Consensus 247 -------~~~--~-------~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 287 (379)
... . .....++.+..++.+|.++-++|+..++.-....++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~ 190 (302)
T d1fcja_ 134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKG 190 (302)
T ss_dssp TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHT
T ss_pred ccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeee
Confidence 000 1 1133345555555789999998886666555555543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=82.82 E-value=3.7 Score=31.62 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=63.4
Q ss_pred hccCCCCCCEEEEEcC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCce--EeCCCCCCchHHHHHHHhcCCC
Q 016978 188 NTAKVEPGSIVAVFGL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTE--FVNPKDHDKPIQQVLVDLTDGG 264 (379)
Q Consensus 188 ~~~~~~~g~~VlI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~--v~~~~~~~~~~~~~i~~~~~~g 264 (379)
+...+++|..+ |-++ |.=|+.. .+++. +. +|+++++.++..+.++++-.+. +++... .++.+.+.....+.
T Consensus 12 ~~l~~~~g~~~-vD~T~G~GGhs~-~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f--~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 12 DLLAVRPGGVY-VDATLGGAGHAR-GILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF--RHLKRHLAALGVER 85 (182)
T ss_dssp HHHTCCTTCEE-EETTCTTSHHHH-HHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG--GGHHHHHHHTTCSC
T ss_pred HhcCCCCCCEE-EEeCCCCcHHHH-HHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH--HHHHHHHHHcCCCc
Confidence 34457788875 4344 4445543 33443 55 8999999999888888753332 233322 55666665554457
Q ss_pred ccEEE-EcCCCH---------------HHHHHHHHHhccCCceEEEEcc
Q 016978 265 VDYSF-ECIGNV---------------SVMRAALECCHKGWGTSVIVGV 297 (379)
Q Consensus 265 ~d~vi-d~~g~~---------------~~~~~~~~~l~~~~G~iv~~g~ 297 (379)
+|.|+ |. |-+ ..+......+.++ |+++.+..
T Consensus 86 vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~f 132 (182)
T d1wg8a2 86 VDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAF 132 (182)
T ss_dssp EEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred cCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEec
Confidence 88655 54 321 1367778888996 88887754
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=82.81 E-value=2.5 Score=32.32 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcC-CCeEEEEcC--ChhHHHHHHhcCCce--------------EeCCCCCCchHHHHHHH
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDI--DPKKFDRAKNFGVTE--------------FVNPKDHDKPIQQVLVD 259 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~--~~~~~~~~~~lg~~~--------------v~~~~~~~~~~~~~i~~ 259 (379)
+|.|.|-|-+|.++...+.... . +++++.. +.+.+.++-++...+ +++...-.-.......+
T Consensus 3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~ 81 (171)
T d3cmco1 3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN 81 (171)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence 5788999999999887776443 4 6777743 223333443322210 11100000000000112
Q ss_pred hcC-C-CccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 260 LTD-G-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 260 ~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
... . ++|+|+||+|.-.....+...+..+ -+-|.+..+.
T Consensus 82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~ 122 (171)
T d3cmco1 82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPA 122 (171)
T ss_dssp CCTGGGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred ccccccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEeccc
Confidence 221 2 7999999999855566777777775 6556665543
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.69 E-value=0.59 Score=36.51 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=27.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCCCeEEEEcC
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGASRVIGIDI 227 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~ 227 (379)
.+|+|+|+|+.|+.++..|...|. ++++++.
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~ 36 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG 36 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence 689999999999999988889999 7788764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=82.38 E-value=0.87 Score=35.40 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCCCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCce---EeCCCCCCchHHHHHHHhc-
Q 016978 192 VEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTE---FVNPKDHDKPIQQVLVDLT- 261 (379)
Q Consensus 192 ~~~g~~VlI~--Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~---v~~~~~~~~~~~~~i~~~~- 261 (379)
...|.+||=+ |.|++|+-++ ..|+++|+.++.+.+..+.+++ ++... ++. .+..+.+....
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~----srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~-----~D~~~~l~~~~~ 109 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAV----SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK-----MDANRALEQFYE 109 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE-----SCHHHHHHHHHH
T ss_pred hcCCCEEEEcccccccccceee----ecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc-----ccchhhhhhhcc
Confidence 3468888876 4577877533 4889899999999988777654 44432 222 23444444432
Q ss_pred CC-CccEEEEcCC----C-HHHHHHHHH--HhccCCceEE
Q 016978 262 DG-GVDYSFECIG----N-VSVMRAALE--CCHKGWGTSV 293 (379)
Q Consensus 262 ~~-g~d~vid~~g----~-~~~~~~~~~--~l~~~~G~iv 293 (379)
.+ .||+||---. . ...+..+.. .++++ |.++
T Consensus 110 ~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi 148 (182)
T d2fhpa1 110 EKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV 148 (182)
T ss_dssp TTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred cCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence 23 7999884211 1 234454443 36775 7655
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.67 Score=36.82 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=26.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
|+|+|+|+.|+.++..|..+|. +|.+++..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGA-RAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence 6788999999999999999999 88888653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.22 E-value=3.4 Score=35.93 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=63.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh----cCCceE--------eCCCCC----CchHHHHHH
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN----FGVTEF--------VNPKDH----DKPIQQVLV 258 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~----lg~~~v--------~~~~~~----~~~~~~~i~ 258 (379)
+.+||= +-++.|..+++.|+..|+++|++.|.+++..+.+++ .+.... ...... ..+....+.
T Consensus 46 ~~~vLD-~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLD-ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEE-SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEE-cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 344432 446778899999999999899999999998888764 122110 000000 012222332
Q ss_pred HhcCCCccE-EEEcCCC-HHHHHHHHHHhccCCceEEEEc
Q 016978 259 DLTDGGVDY-SFECIGN-VSVMRAALECCHKGWGTSVIVG 296 (379)
Q Consensus 259 ~~~~~g~d~-vid~~g~-~~~~~~~~~~l~~~~G~iv~~g 296 (379)
+ ....||+ .+|..|+ ..++..++++++.+ |.+....
T Consensus 125 ~-~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa 162 (375)
T d2dula1 125 E-RHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA 162 (375)
T ss_dssp H-STTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred h-hcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence 2 2337996 4588888 57799999999996 8776653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=82.04 E-value=0.64 Score=39.85 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=26.8
Q ss_pred CEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChh
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPK 230 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~ 230 (379)
++|+|+|||+.|++++..++..|. .+|++++++++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 689999999999988765555442 38999987653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.93 E-value=0.78 Score=36.74 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH----hcCCceEeCCCCCCchHHHHHHH---hcC-CC
Q 016978 194 PGSIVAVFGLGTVGLAVAEGAKAAGA-SRVIGIDIDPKKFDRAK----NFGVTEFVNPKDHDKPIQQVLVD---LTD-GG 264 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a~~la~~~g~-~~vi~v~~~~~~~~~~~----~lg~~~v~~~~~~~~~~~~~i~~---~~~-~g 264 (379)
+-++||-+|.+ .|..++.+|+++.- .+|++++.+++..+.++ ..|...-+.... .+..+.+.+ ... +.
T Consensus 56 kpk~ILEiGt~-~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~--Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAY-CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN--GASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE--SCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccC-chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee--ccccccccchhhcccccc
Confidence 44799999874 46677788887642 39999999998777664 345432111111 223333333 222 37
Q ss_pred ccEEEEcCCCHH-----HHHHHHHHhccCCceEE
Q 016978 265 VDYSFECIGNVS-----VMRAALECCHKGWGTSV 293 (379)
Q Consensus 265 ~d~vid~~g~~~-----~~~~~~~~l~~~~G~iv 293 (379)
+|.||--..... .+...+..++++ |.++
T Consensus 133 ~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv 165 (214)
T d2cl5a1 133 LDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL 165 (214)
T ss_dssp EEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred cceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence 998874322211 234455668885 7544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.93 E-value=0.67 Score=38.35 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.1
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|+|+|+|.+|+.++.-+...|. +|++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~-~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 38899999999998888888999 89999764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.89 E-value=0.61 Score=40.00 Aligned_cols=33 Identities=30% Similarity=0.262 Sum_probs=28.4
Q ss_pred CEE-EEEcC-ChHHHHHHHHHHHcCCCeEEEEcCCh
Q 016978 196 SIV-AVFGL-GTVGLAVAEGAKAAGASRVIGIDIDP 229 (379)
Q Consensus 196 ~~V-lI~Ga-g~vG~~a~~la~~~g~~~vi~v~~~~ 229 (379)
++| ||+|+ |-+|..++..+...|+ +|+++++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence 357 99988 9999999999988999 999998753
|
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.84 E-value=4 Score=34.48 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=66.0
Q ss_pred hccCCCCCCEEEEE-cCChHHHHHHHHHHHcCCCeEEEEc--CChhHHHHHHhcCCceEeCCC-----------------
Q 016978 188 NTAKVEPGSIVAVF-GLGTVGLAVAEGAKAAGASRVIGID--IDPKKFDRAKNFGVTEFVNPK----------------- 247 (379)
Q Consensus 188 ~~~~~~~g~~VlI~-Gag~vG~~a~~la~~~g~~~vi~v~--~~~~~~~~~~~lg~~~v~~~~----------------- 247 (379)
+.+.++++...+|. .+|..|++.+..++.+|.+-++++. .++.|++.++.+|++.+....
T Consensus 57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~ 136 (320)
T d1z7wa1 57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAK 136 (320)
T ss_dssp HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHh
Confidence 44556666555555 6699999999999999984333332 356788999999986442110
Q ss_pred ----------CCCc-------hHHHHHHHhcCCCccEEEEcCCCHHHHHH---HHHHhccCCceEEEE
Q 016978 248 ----------DHDK-------PIQQVLVDLTDGGVDYSFECIGNVSVMRA---ALECCHKGWGTSVIV 295 (379)
Q Consensus 248 ----------~~~~-------~~~~~i~~~~~~g~d~vid~~g~~~~~~~---~~~~l~~~~G~iv~~ 295 (379)
+++. ....++.+...+.+|.++-++|+..++.- .++...+. -+++.+
T Consensus 137 ~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igv 203 (320)
T d1z7wa1 137 TPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGV 203 (320)
T ss_dssp CTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred CCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeecc
Confidence 0011 12234444444578999988888655443 33445553 566544
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.74 E-value=0.76 Score=34.66 Aligned_cols=92 Identities=17% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHHcCC--CeEEEEcCChhHHHHHHhcCCce-EeCCCCCCchHHHHHHHhcCCCccEEEE
Q 016978 195 GSIVAVFGL-GTVGLAVAEGAKAAGA--SRVIGIDIDPKKFDRAKNFGVTE-FVNPKDHDKPIQQVLVDLTDGGVDYSFE 270 (379)
Q Consensus 195 g~~VlI~Ga-g~vG~~a~~la~~~g~--~~vi~v~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~i~~~~~~g~d~vid 270 (379)
|-+|.|+|| |-+|.-+++++..... .++..+.+++..-+......... .....+ . .....|+++-
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~--~---------~~~~~d~~f~ 69 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE--T---------AFEGVDIALF 69 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT--T---------TTTTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch--h---------hhhhhhhhhh
Confidence 458999999 9999999999987642 24544533222111100011000 111111 1 1126899999
Q ss_pred cCCCHHHHHHHHHHhccCCceEEEEccC
Q 016978 271 CIGNVSVMRAALECCHKGWGTSVIVGVA 298 (379)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~~G~iv~~g~~ 298 (379)
+.+..............+ -+++..+..
T Consensus 70 ~~~~~~s~~~~~~~~~~~-~~VIDlSsd 96 (154)
T d2gz1a1 70 SAGSSTSAKYAPYAVKAG-VVVVDNTSY 96 (154)
T ss_dssp CSCHHHHHHHHHHHHHTT-CEEEECSST
T ss_pred ccCccchhhHHhhhcccc-ceehhcChh
Confidence 999877777777777885 888888654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=4.6 Score=28.99 Aligned_cols=89 Identities=15% Similarity=0.252 Sum_probs=51.2
Q ss_pred CCCEEEEEcCChH-----------HHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcC
Q 016978 194 PGSIVAVFGLGTV-----------GLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTD 262 (379)
Q Consensus 194 ~g~~VlI~Gag~v-----------G~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~ 262 (379)
.-++|||+|+|+. +.-++..++..|+ +++.+.++++....-..+ +|.++-..= ..+....+.+.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-t~e~v~~Ii~~-- 80 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-HWEVVRKIIEK-- 80 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-CHHHHHHHHHH--
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-CHHHHHHHHHH--
Confidence 3489999998742 2345555556799 899998988754322222 344432111 12232222222
Q ss_pred CCccEEEEcCCCHHHHHHHHHHhcc
Q 016978 263 GGVDYSFECIGNVSVMRAALECCHK 287 (379)
Q Consensus 263 ~g~d~vid~~g~~~~~~~~~~~l~~ 287 (379)
+..|.|+-+.|+-..++.+..+...
T Consensus 81 E~pd~il~~~GGQtalnla~~L~~~ 105 (127)
T d1a9xa3 81 ERPDAVLPTMGGQTALNCALELERQ 105 (127)
T ss_dssp HCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred hCcCCeEEEeeeehHhHHHHHHHHc
Confidence 2688888888885556666665433
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=81.51 E-value=0.7 Score=36.67 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 198 VAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 198 VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
|+|+|+|+-|+.++..|...|. +|..++..
T Consensus 6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence 7788999999999999999999 88888753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.47 E-value=0.28 Score=40.37 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHh
Q 016978 191 KVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKN 237 (379)
Q Consensus 191 ~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~ 237 (379)
...+|++||=+|+|. |..+..++.. ++..|++++.++...+.+++
T Consensus 48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~ 92 (257)
T d2a14a1 48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK 92 (257)
T ss_dssp TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence 356788898888864 4444444444 44489999999998888765
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.41 E-value=1.2 Score=31.55 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=40.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcCCC--eEEEEcCChhHHHHHHhcCCceEeCCCCCCchHHHHHHHhcCC-CccEEEEc
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAGAS--RVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFEC 271 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g~~--~vi~v~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~i~~~~~~-g~d~vid~ 271 (379)
.++++|+|+|.+|.-++..++.+|.+ .|..+.+.+. ++.. .+.+..+.+.+.... |+++.+++
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~--~d~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRG--FDHTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTT--SCHHHHHHHHHHHHHTTCEEEESC
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhcc--cchHHHHHHHHHHHhcCcEEEcCC
Confidence 47999999999999988888877752 5888865432 1111 124455555554333 77777754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=80.93 E-value=1.6 Score=32.49 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhHH
Q 016978 195 GSIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKKF 232 (379)
Q Consensus 195 g~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~~ 232 (379)
..+|.|+|+|.+|...+..+...| +..++.++..+++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~ 43 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT 43 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence 468999999999999888888777 45899999888653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.89 E-value=1.3 Score=33.15 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=37.7
Q ss_pred hhhhhhhhhccCCCCCCEEEEE--cCChHHHHHHHHHHHcCCCeEEEEcCChh
Q 016978 180 PTGLGAVWNTAKVEPGSIVAVF--GLGTVGLAVAEGAKAAGASRVIGIDIDPK 230 (379)
Q Consensus 180 ~ta~~~l~~~~~~~~g~~VlI~--Gag~vG~~a~~la~~~g~~~vi~v~~~~~ 230 (379)
.|+...+ . .+..+++.|+|+ |+|-+|+-+++.+..+|. +|..+...+.
T Consensus 26 ~t~~d~l-~-~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~ 75 (156)
T d1djqa2 26 LTPEQVM-D-GKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHL 75 (156)
T ss_dssp ECHHHHH-H-TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred ECHHHHh-c-CccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCc
Confidence 3555532 2 467789999997 779999999999999999 8988877543
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.85 E-value=2.2 Score=32.47 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred EEEEEcCChHHHHHHHHHHHc-CCCeEEEEcC---ChhHHHHHHhcCCce--------------Ee--------CCCCC-
Q 016978 197 IVAVFGLGTVGLAVAEGAKAA-GASRVIGIDI---DPKKFDRAKNFGVTE--------------FV--------NPKDH- 249 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~-g~~~vi~v~~---~~~~~~~~~~lg~~~--------------v~--------~~~~~- 249 (379)
+|.|.|-|-+|.++.+.+... .. .++++.. +.+.+.++-++-..+ .+ ..++.
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~ 80 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS 80 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence 578999999999999988755 34 6777743 345556554432211 11 11110
Q ss_pred CchHHHHHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCC
Q 016978 250 DKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299 (379)
Q Consensus 250 ~~~~~~~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~ 299 (379)
.-.|.+ .++|+|+||+|.-.....+...+..+ ..-|++..+.
T Consensus 81 ~i~W~~-------~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~ 122 (166)
T d2b4ro1 81 QIPWGK-------CQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPP 122 (166)
T ss_dssp GCCHHH-------HTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred Hccccc-------cCCCEEEEecccccchhhhhhhhccC-CCEEEEeccc
Confidence 011211 18999999999855566677777775 6666666544
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=80.83 E-value=1.2 Score=35.70 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=59.6
Q ss_pred ccCCCCCCEEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC--------h-----hHHHHHHhcCCceEeCCCCCCchHHH
Q 016978 189 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRVIGIDID--------P-----KKFDRAKNFGVTEFVNPKDHDKPIQQ 255 (379)
Q Consensus 189 ~~~~~~g~~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~--------~-----~~~~~~~~lg~~~v~~~~~~~~~~~~ 255 (379)
..+--.+.+|++.|+|..|...+++....+.++++.+++. . .+.++.+.... .....++.+
T Consensus 20 ~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 93 (222)
T d1vl6a1 20 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP------ERLSGDLET 93 (222)
T ss_dssp HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT------TCCCSCHHH
T ss_pred hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcc------hhhhcchHh
Confidence 3344567899999999999999999999999999999874 1 12333332111 111123333
Q ss_pred HHHHhcCCCccEEEEcCCCHHHHHHHHHHhccCCceEEEEccCCC
Q 016978 256 VLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAAS 300 (379)
Q Consensus 256 ~i~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~ 300 (379)
.++ +.++++-.....-+-.+.+..+.+. -.|.-++++..
T Consensus 94 ~l~-----g~~~~~g~~~~~~~~~e~m~~~~~r-PIIFpLSNPt~ 132 (222)
T d1vl6a1 94 ALE-----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPVP 132 (222)
T ss_dssp HHT-----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSSC
T ss_pred hcc-----CcceeccccccccccHHHHhhcCCC-CEEEecCCCcc
Confidence 331 4677666555433334455566663 56656665543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=80.48 E-value=1.7 Score=32.38 Aligned_cols=36 Identities=42% Similarity=0.597 Sum_probs=30.2
Q ss_pred CEEEEEcCChHHHHHHHHHHHcC-CCeEEEEcCChhH
Q 016978 196 SIVAVFGLGTVGLAVAEGAKAAG-ASRVIGIDIDPKK 231 (379)
Q Consensus 196 ~~VlI~Gag~vG~~a~~la~~~g-~~~vi~v~~~~~~ 231 (379)
++|.|+|+|.+|..++..+...| +..++.++.++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 38 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK 38 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence 57889999999998888777777 4689999988876
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=80.43 E-value=1.2 Score=32.21 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=45.7
Q ss_pred hhccCCCCCCEEEEE-cC-ChHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHhcCCceEeCCC
Q 016978 187 WNTAKVEPGSIVAVF-GL-GTVGLAVAEGAKAAGASRVIGIDIDPKKFDRAKNFGVTEFVNPK 247 (379)
Q Consensus 187 ~~~~~~~~g~~VlI~-Ga-g~vG~~a~~la~~~g~~~vi~v~~~~~~~~~~~~lg~~~v~~~~ 247 (379)
+..+++..-+.|++. +. ...-.++...++..+..++++-..+++..+.++++|+++++.+.
T Consensus 57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~ 119 (134)
T d2hmva1 57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE 119 (134)
T ss_dssp HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence 445566666776664 54 35556667777788877899988899999999999999998654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.33 E-value=0.75 Score=39.06 Aligned_cols=31 Identities=42% Similarity=0.537 Sum_probs=27.3
Q ss_pred EEEEEcCChHHHHHHHHHHHcCCCeEEEEcCC
Q 016978 197 IVAVFGLGTVGLAVAEGAKAAGASRVIGIDID 228 (379)
Q Consensus 197 ~VlI~Gag~vG~~a~~la~~~g~~~vi~v~~~ 228 (379)
.|||+|+|..|+.++.-|...|+ +|++++..
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~ 51 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKA 51 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 48899999999999999999999 89999754
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=80.16 E-value=5.7 Score=30.06 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=27.3
Q ss_pred CCCEEEEEcCChHHHHH---HHHHH--HcCCCeEEEEcCChhHHH
Q 016978 194 PGSIVAVFGLGTVGLAV---AEGAK--AAGASRVIGIDIDPKKFD 233 (379)
Q Consensus 194 ~g~~VlI~Gag~vG~~a---~~la~--~~g~~~vi~v~~~~~~~~ 233 (379)
|+-+|.|+|+|.+|... ..+++ .+....++.++.++++.+
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~ 45 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLD 45 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHH
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHH
Confidence 45689999999888542 22333 222348999999988765
|