Citrus Sinensis ID: 016995

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38

MSKSIAANPSGEDSKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFMELPPDQKSLPRSWTVPKKCRETPFHPPDESPNSLPPAAPKISAQEGNNQ

ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHcccccccccccccEEEEEcccccccccccccccEEEEEEEEcHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEEEccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHcccc

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccHHHHHHHHHHccccEEEEEEEcHHHcccccHHHHHHHHHHcccccHHHHccEEEEEEcHHHHHHHHHHcccEEEEcccccccccHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEccccccccccccEEEEEcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHccEEEEEEccHHccccccccccHHHEEEEEcHHcHcHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccEEEEccccc

msksiaanpsgedskaplinqRTVIITLFVVAAVSCLFLyhtanpfeflprssaydviapsmkaqkssndpSLEKILKRAAMGDNTVIITTLNqawaepnsIFDIFLESfrtgngtgkLLDHLVVVALDSkaldhclsthphcyalntsgldfsgkeaYFMTSSYLEMMWIRIRLLSDVLAMGynfvftqdadivwlqnpfqrfdpdadfqiacdrfsgnsfnlrnepnggfnyvksnnrTIEFYKFWYnsrkmfpglhdqdvlneikfdpyiQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHanccfgleAKITDLRLALEDWRnfmelppdqkslprswtvpkkcretpfhppdespnslppaapkisaqegnnq

msksiaanpsgedskapliNQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPsmkaqkssndpSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGnsfnlrnepnggfnyvksnNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFMelppdqkslprswTVPKKCRETPFhppdespnslppaapkisaqegnnq

*****************LINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVI*****************ILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFME************************************************

*********************RTVIITLFVVAAVSCLFLYHTANPFEFLPRSS********************EKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFS****YFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFME**********SWTVPKKCRE****************************

*************SKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDVIAPS**********SLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFMELPPDQKSLPRSWTVPKKCRET************PPAAPK*********

****************PLINQRTVIITLFVVAAVSCLFLYHTANPF**********************NDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFMELP*******RSWT***********************************

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		379	2.2.26 [Sep-21-2011]
P0C042		367	Uncharacterized protein A	no	no	0.707	0.730	0.519	4e-79
Q3E6Y3		329	Uncharacterized protein A	no	no	0.699	0.805	0.407	2e-52

>sp\|P0C042\|Y4597_ARATH Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1	Back alignment and function desciption

 Score =  295 bits (755), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/279 (51%), Positives = 179/279 (64%), Gaps = 11/279 (3%)

Query: 72  SLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSK 131
            L KIL  AA  D TVIITTLN+AW+EPNS FD+FL SF  G GT  LL HLVV  LD +
Sbjct: 41  KLGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKGTKPLLRHLVVACLDEE 100

Query: 132 ALDHCLSTHPH-CYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQ 190
           A   C   HPH CY + T G+DF+G +  FMT  YL+MMW RI  L  +L + YNF+FT 
Sbjct: 101 AYSRCSEVHPHRCYFMKTPGIDFAG-DKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFTI 159

Query: 191 DADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYN 250
                    PF R   + DFQIACDR+SG+  ++ N  NGGF +VK+N RTI+FY +WY 
Sbjct: 160 ---------PFPRLSKEVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTIDFYNYWYM 210

Query: 251 SRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCF 310
           SR  +P  HDQDVL++IK   Y  KI +K+RFLDTKY  GFC+ S+D + VCTMHANCC 
Sbjct: 211 SRLRYPDRHDQDVLDQIKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCTMHANCCV 270

Query: 311 GLEAKITDLRLALEDWRNFMELPPDQKSLPRSWTVPKKC 349
           GLE KI DLR  + DW N++           +W  P+ C
Sbjct: 271 GLENKIKDLRQVIVDWENYVSAAKTTDGQIMTWRDPENC 309

Arabidopsis thaliana (taxid: 3702)

>sp\|Q3E6Y3\|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
224111368		404	predicted protein [Populus trichocarpa]	0.849	0.797	0.584	1e-110
359491833		346	PREDICTED: uncharacterized protein At4g1	0.846	0.927	0.581	1e-109
359491817		373	PREDICTED: uncharacterized protein At4g1	0.878	0.892	0.548	1e-106
224125690		357	predicted protein [Populus trichocarpa]	0.883	0.938	0.555	1e-105
255561745		394	pentatricopeptide repeat-containing prot	0.849	0.817	0.571	1e-105
224099643		277	predicted protein [Populus trichocarpa]	0.725	0.992	0.643	1e-104
224120464		329	predicted protein [Populus trichocarpa]	0.852	0.981	0.571	1e-104
356529763		349	PREDICTED: uncharacterized protein At4g1	0.899	0.977	0.539	1e-103
356560053		379	PREDICTED: uncharacterized protein At4g1	0.881	0.881	0.552	1e-103
359473691		415	PREDICTED: uncharacterized protein At4g1	0.778	0.710	0.577	1e-102

>gi\|224111368\|ref\|XP_002315829.1\| predicted protein [Populus trichocarpa] gi\|222864869\|gb\|EEF02000.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/337 (58%), Positives = 243/337 (72%), Gaps = 15/337 (4%)

Query: 26  ITLFVVAAVSCLFLYHTANPFEFLPRSSAYDV-IAPSMKAQKSSN-----------DPSL 73
           + +FV  +VS L LY  A+   F   SS Y   I PS++   +S+           D  L
Sbjct: 49  VLVFVAISVSVLLLYGAADSLRFQSSSSGYSFNIFPSLRNSNNSDSKLSINDDGDDDYKL 108

Query: 74  EKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSKAL 133
           EK+LK AAM D TVII TLN+AWA PN+I D+FLESFR G GT +LL+HLV+VALD KA 
Sbjct: 109 EKVLKEAAMEDKTVIIATLNEAWAAPNTIIDLFLESFRIGQGTRRLLNHLVIVALDRKAY 168

Query: 134 DHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDAD 193
             C+  H HC+AL T GLDF   EAYFMT +YLEMMW RI  L  VL MGYNFVFT DAD
Sbjct: 169 KRCMEFHAHCFALVTQGLDFH-DEAYFMTPAYLEMMWRRIDFLRAVLQMGYNFVFT-DAD 226

Query: 194 IVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRK 253
           I+W ++PF RF  DADFQIACD F GNS +++N PNGGFNYVKSNNRTIEFYKFWY+SR+
Sbjct: 227 IMWFRDPFPRFYLDADFQIACDHFLGNSSDIQNRPNGGFNYVKSNNRTIEFYKFWYSSRE 286

Query: 254 MFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFGLE 313
            +PG HDQDVLN IKFDP+I+ + +K+RFLDT +  G C+ S+D N VCTMHANCC+GL+
Sbjct: 287 TYPGYHDQDVLNFIKFDPFIEDLGLKMRFLDTAFFGGLCEPSKDLNLVCTMHANCCYGLD 346

Query: 314 AKITDLRLALEDWRNFMELPPD-QKSLPRSWTVPKKC 349
           +K+ DLR+ L+DW+ F+ LPP  ++S    WTVP+ C
Sbjct: 347 SKLHDLRIMLQDWKTFLSLPPALKRSSSMLWTVPQNC 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359491833\|ref\|XP_002270793.2\| PREDICTED: uncharacterized protein At4g15970-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359491817\|ref\|XP_002270758.2\| PREDICTED: uncharacterized protein At4g15970-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224125690\|ref\|XP_002329694.1\| predicted protein [Populus trichocarpa] gi\|222870602\|gb\|EEF07733.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255561745\|ref\|XP_002521882.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi\|223538920\|gb\|EEF40518.1\| pentatricopeptide repeat-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224099643\|ref\|XP_002311563.1\| predicted protein [Populus trichocarpa] gi\|222851383\|gb\|EEE88930.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224120464\|ref\|XP_002318336.1\| predicted protein [Populus trichocarpa] gi\|222859009\|gb\|EEE96556.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356529763\|ref\|XP_003533457.1\| PREDICTED: uncharacterized protein At4g15970-like [Glycine max]	Back alignment and taxonomy information

>gi\|356560053\|ref\|XP_003548310.1\| PREDICTED: uncharacterized protein At4g15970-like [Glycine max]	Back alignment and taxonomy information

>gi\|359473691\|ref\|XP_002273214.2\| PREDICTED: uncharacterized protein At4g15970 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
TAIR\|locus:2204508		386	AT1G14590 "AT1G14590" [Arabido	0.960	0.943	0.506	6.6e-97
TAIR\|locus:4515102789		408	AT2G02061 "AT2G02061" [Arabido	0.899	0.835	0.512	7.6e-96
TAIR\|locus:2156304		367	AT5G44820 "AT5G44820" [Arabido	0.854	0.882	0.536	2.7e-93
TAIR\|locus:2119827		715	AT4G19970 "AT4G19970" [Arabido	0.857	0.454	0.530	3e-92
TAIR\|locus:2018688		338	AT1G28700 "AT1G28700" [Arabido	0.659	0.739	0.433	2.1e-54
TAIR\|locus:2018783		340	AT1G28710 "AT1G28710" [Arabido	0.664	0.741	0.428	1.1e-53
TAIR\|locus:1006230710		329	AT1G28695 "AT1G28695" [Arabido	0.699	0.805	0.407	4e-51
TAIR\|locus:2164476		322	AT5G40900 "AT5G40900" [Arabido	0.725	0.854	0.352	8.1e-44
TAIR\|locus:2037273		402	RRA1 "REDUCED RESIDUAL ARABINO	0.498	0.470	0.253	1e-05
TAIR\|locus:2037248		428	RRA2 "REDUCED RESIDUAL ARABINO	0.498	0.441	0.267	1.5e-05

TAIR\|locus:2204508 AT1G14590 "AT1G14590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 192/379 (50%), Positives = 248/379 (65%)

Query:     2 SKSIAANP----SGEDSKAPLINQRTVIITLFVVAAVSCLFLYHTANPFEFLPRSSAYDV 57
             + S A NP    SGE S  P I  R   + L  ++ +SC  LY  A+   F P    +D 
Sbjct:    18 ASSSANNPFAEGSGEMSPGPSIPLRRAALFLAAIS-ISCFVLYRAADSLSFSP--PIFD- 73

Query:    58 IAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTG 117
                 + +   + +P LE +L +AA  D TV++TTLN AWA P S+ D+F ESFR G  T 
Sbjct:    74 ----LSSYLDNEEPKLEDVLSKAATRDRTVVLTTLNAAWAAPGSVIDLFFESFRIGEETS 129

Query:   118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177
             ++LDHLV+VALD+KA   CL  H HC++L T G+DFS +EAYFMT SYL+MMW RI LL 
Sbjct:   130 QILDHLVIVALDAKAYSRCLELHKHCFSLVTEGVDFS-REAYFMTRSYLKMMWRRIDLLR 188

Query:   178 DVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKS 237
              VL MGYNFVFT DAD++W +NPF RF   ADFQIACD + G S +L N PNGGFN+V+S
Sbjct:   189 SVLEMGYNFVFT-DADVMWFRNPFPRFYMYADFQIACDHYLGRSNDLHNRPNGGFNFVRS 247

Query:   238 NNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQD 297
             NNRTI FYK+WY SR  FPG HDQDVLN +K +P++ +I +K+RFL+T Y  G C+ S+D
Sbjct:   248 NNRTILFYKYWYASRLRFPGYHDQDVLNFLKAEPFVFRIGLKMRFLNTAYFGGLCEPSRD 307

Query:   298 FNAVCTMHANCCFGLEAKITDLRLALEDWRNFMELPPDQK-SLPRSWTVPKKCRETPFHP 356
              N V TMHANCC+G+E+K+ DLR+ L+DW++FM LP   K S   SW VP+ C       
Sbjct:   308 LNLVRTMHANCCYGMESKLHDLRIMLQDWKDFMSLPLHLKQSSGFSWKVPQNCSLDSLRR 367

Query:   357 PDESPNSLPPAAPKISAQE 375
              DES      + P   +Q+
Sbjct:   368 YDESVEDDEESDPPGESQD 386

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR\|locus:4515102789 AT2G02061 "AT2G02061" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156304 AT5G44820 "AT5G44820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2119827 AT4G19970 "AT4G19970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018688 AT1G28700 "AT1G28700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018783 AT1G28710 "AT1G28710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:1006230710 AT1G28695 "AT1G28695" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164476 AT5G40900 "AT5G40900" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037273 RRA1 "REDUCED RESIDUAL ARABINOSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037248 RRA2 "REDUCED RESIDUAL ARABINOSE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_X000914	hypothetical protein (404 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		379
pfam03407		208	pfam03407, Nucleotid_trans, Nucleotide-diphospho-s	4e-76

>gnl\|CDD\|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase	Back alignment and domain information

 Score =  234 bits (598), Expect = 4e-76
 Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 10/210 (4%)

Query: 118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177
            LL++L+VVALD +A   C    PH   L +   D S K+  F + +YL+M W R+RLL 
Sbjct: 1   GLLENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLL 60

Query: 178 DVLAMGYNFVFTQDADIVWLQNPFQRFD-PDADFQIACDRFSGNSFN-LRNEPNGGFNYV 235
           ++L +GYNF+F+ D D+VWL+NPF     PDAD  I+ D + G + + L+N  NGGF YV
Sbjct: 61  ELLELGYNFIFS-DVDVVWLRNPFPLLYLPDADIIISSDNYDGTTADGLKNWLNGGFFYV 119

Query: 236 KSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVS 295
           +  NR+I  +K W      +PGLHDQDV N +  +    ++  K RFLDT    GFCQ  
Sbjct: 120 RPTNRSIALFKKWAERLLTYPGLHDQDVFNYLLREGAAGELGYKCRFLDTALFGGFCQSR 179

Query: 296 QDFNAVCT------MHANCCFGLEAKITDL 319
            D+  V T      +HANCC G + K+  L
Sbjct: 180 -DWKYVQTDKKPVAVHANCCSGTDGKLHRL 208

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		379
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	100.0
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	98.02
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.81
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	97.56
PLN00176		333	galactinol synthase	97.49
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	97.39
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	97.34
PLN03181		453	glycosyltransferase; Provisional	97.17
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	96.52
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	96.46
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	96.23
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	95.59
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	93.2
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	91.17
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	91.12
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	89.7
PF03314		222	DUF273: Protein of unknown function, DUF273; Inter	86.83
PLN02829		639	Probable galacturonosyltransferase	82.79
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	81.06

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

Probab=100.00  E-value=7e-42  Score=316.03  Aligned_cols=201  Identities=31%  Similarity=0.599  Sum_probs=172.6

Q ss_pred             cccccEEEEEcCHHHHHHhhhcCCcEEEecCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHHcCceEEEecCccEEEc
Q 016995          118 KLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWL  197 (379)
Q Consensus       118 ~ll~~llVvAlD~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~~yl~mmw~K~~~l~~vL~lGy~vLfs~DvDVVWl  197 (379)
                      ++++|+||+|+|+++++.|++++++|+.+.....+...+...++++.|.+++|.|+.+++.+|++||+|+|+ |+|||||
T Consensus         1 ~~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~-D~Dvv~~   79 (212)
T PF03407_consen    1 HLIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFS-DADVVWL   79 (212)
T ss_pred             CccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEe-cCCEEEe
Confidence            468999999999999999999999998877542223323678999999999999999999999999999999 9999999


Q ss_pred             cCCcccC-CCCCCeEEeccCCCCCC-CCCCCCCceeEEEEEeChhHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCccC
Q 016995          198 QNPFQRF-DPDADFQIACDRFSGNS-FNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQK  275 (379)
Q Consensus       198 RNPf~~~-~~~aDi~issD~~~g~~-~d~~~~~NtGf~yvRst~rTi~f~~~W~~~r~~~pg~~DQ~vfN~il~~~~~~~  275 (379)
                      |||+++| ..++|+++++|...+.. ...++.+|+||||+|+|++|++|++.|.......++.+||.+||.+++......
T Consensus        80 ~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~  159 (212)
T PF03407_consen   80 RDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAARY  159 (212)
T ss_pred             cCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCC
Confidence            9999999 88999999999877643 334556899999999999999999999998888888899999999995544433


Q ss_pred             cceEEEEcCccccC----Cccc-ccCC----CCceEEEeccccCCccchHHHH
Q 016995          276 IQVKIRFLDTKYIA----GFCQ-VSQD----FNAVCTMHANCCFGLEAKITDL  319 (379)
Q Consensus       276 ~gl~v~~Ld~~~F~----gfcq-~~~d----~~~v~tvHaNc~~G~~~Kv~dL  319 (379)
                      .++++++||+.+|+    .|++ ....    ..++++||+|||.|.++|+++|
T Consensus       160 ~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  160 GGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             cCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence            79999999999994    4666 1111    2579999999999999999875

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		379
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 56/336 (16%), Positives = 100/336 (29%), Gaps = 118/336 (35%)

Query: 55  YDVIAPSMKAQKSSNDPSLEKIL---KRAAM-GDNTVI----------ITTLNQAWAEPN 100
           Y  +   +K +     PS+   +   +R  +  DN V              L QA  E  
Sbjct: 91  YKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 101 SIFDIFLESFRTG-NGTGKLLDHLVVVALDSKALDHCLSTHPHCYALNTSGLDFSGKEAY 159
              ++ ++    G  G+GK       VALD      CLS    C       +DF      
Sbjct: 149 PAKNVLID----GVLGSGK-----TWVALDV-----CLSYKVQC------KMDF------ 182

Query: 160 FMTSSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSG 219
                  ++ W+          +      + +  +  LQ    + DP+  +    D    
Sbjct: 183 -------KIFWLN---------LKN--CNSPETVLEMLQKLLYQIDPN--WTSRSDH--- 219

Query: 220 NSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVK 279
            S N++       + +++  R +   K + N       L    VL  ++           
Sbjct: 220 -SSNIKLR----IHSIQAELRRLLKSKPYENC------L---LVLLNVQ----------- 254

Query: 280 IRFLDTKYIAGF---CQVSQDFNAVCTMHANCCFGLEAKITDLRLALEDWRNFMELPPDQ 336
               + K    F   C++      + T        L A  T   ++L+     +  P + 
Sbjct: 255 ----NAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTT-HISLDHHSMTLT-PDEV 303

Query: 337 KSLPRSWTVPKKCRETPFHPPDESPNSLPPAAPKIS 372
           KSL   +              D  P  LP      +
Sbjct: 304 KSLLLKYL-------------DCRPQDLPREVLTTN 326

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		379
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	97.6
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	97.36
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	96.57
3tzt_A		276	Glycosyl transferase family 8; structural genomics	96.35

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

Probab=97.60  E-value=0.00029  Score=69.01  Aligned_cols=161  Identities=18%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             EEEEEccccccCCcchHHHHHHHhh-hcCCCccccccEEEEEcC---HHHHHHhhhcCCcEEEecCCCCCCCccccccCC
Q 016995           87 VIITTLNQAWAEPNSIFDIFLESFR-TGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMT  162 (379)
Q Consensus        87 VIlT~~N~a~a~p~s~ldlfLeS~r-~G~~t~~ll~~llVvAlD---~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s  162 (379)
                      -|+.++|..|..   -+-..+.|++ .+  +.   ..++|+..|   ++..+.+++.+.....++.-......+-..+..
T Consensus         6 ~vt~~~d~~Yl~---~a~vl~~SL~~~~--s~---~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~   77 (333)
T 1ll2_A            6 FVTLTTNDAYAK---GALVLGSSLKQHR--TS---RRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKR   77 (333)
T ss_dssp             EEEEESSHHHHH---HHHHHHHHHHHTT--CC---SEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHC
T ss_pred             EEEEEeCHHHHH---HHHHHHHHHHHhC--CC---CCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccc
Confidence            344456888753   2344567876 33  21   334445443   566677777765544443211111110000011


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCceEEEecCccEEEccCCcccCCCCCCeEEeccCCCCCCCCCCCCCceeEEEEEeChhHH
Q 016995          163 SSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTI  242 (379)
Q Consensus       163 ~~yl~mmw~K~~~l~~vL~lGy~vLfs~DvDVVWlRNPf~~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst~rTi  242 (379)
                      . +...+|.|+.+.. +.+.. .|||. |+|++.++|+-+.|..+ .+....|.  |    .....|+|++.++++..+-
T Consensus        78 ~-~~~~t~~Kl~i~~-l~~yd-rvlYL-DaD~lv~~di~eLf~~~-~~aAv~d~--~----~~~~fNsGvmlin~~~~~~  146 (333)
T 1ll2_A           78 P-ELGVTLTKLHCWS-LTQYS-KCVFM-DADTLVLANIDDLFERE-ELSAAPDP--G----WPDCFNSGVFVYQPSVETY  146 (333)
T ss_dssp             G-GGHHHHHHGGGGG-CTTCS-EEEEE-CTTEEECSCCGGGGGSC-SSEEEECS--S----STTSEEEEEEEECCCHHHH
T ss_pred             c-chHHHHHHHHHhH-hcCCC-eEEEE-eCCEEeccCHHHHhCCC-ceeEEecC--C----CCcceeeeEEEEeCCHHHH
Confidence            1 2346778877665 22222 59999 99999999998887654 34444442  1    1357999999999985543


Q ss_pred             HHHHHHHHHHHcC--CCCCchHHHHHHHc
Q 016995          243 EFYKFWYNSRKMF--PGLHDQDVLNEIKF  269 (379)
Q Consensus       243 ~f~~~W~~~r~~~--pg~~DQ~vfN~il~  269 (379)
                         +.+.+.....  -...||++||.+..
T Consensus       147 ---~~l~~~~~~~~~~~~~DQ~~LN~~f~  172 (333)
T 1ll2_A          147 ---NQLLHVASEQGSFDGGDQGLLNTFFN  172 (333)
T ss_dssp             ---HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             ---HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence               3333222211  23579999999883

PyMOL of 1ll2

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		379
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	97.61
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	97.41

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.61  E-value=0.0002  Score=64.34  Aligned_cols=165  Identities=18%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             CCeEEEEEccccccCCcchHHHHHHHhh-hcCCCccccccEEEEEc---CHHHHHHhhhcCCcEEEecCCCCCCCccccc
Q 016995           84 DNTVIITTLNQAWAEPNSIFDIFLESFR-TGNGTGKLLDHLVVVAL---DSKALDHCLSTHPHCYALNTSGLDFSGKEAY  159 (379)
Q Consensus        84 d~tVIlT~~N~a~a~p~s~ldlfLeS~r-~G~~t~~ll~~llVvAl---D~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~  159 (379)
                      ++.-+...+|.+|+-   -+-..+.|++ .|.    ..+ ++|+..   .++..+.+++.+..+...+.-..+... ...
T Consensus         3 ~~A~vt~~t~d~Yl~---~a~vl~~SL~~~~~----~~~-~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~-~~~   73 (263)
T d1ll2a_           3 DQAFVTLTTNDAYAK---GALVLGSSLKQHRT----SRR-LAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSA-HLT   73 (263)
T ss_dssp             SEEEEEEESSHHHHH---HHHHHHHHHHHTTC----CSE-EEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTT-HHH
T ss_pred             ccEEEEEEeCHHHHH---HHHHHHHHHHHHCC----CCC-EEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchh-hhh
Confidence            444444446888853   3455677875 442    233 344443   377788888888888776532111111 111


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCc-eEEEecCccEEEccCCcccCCCCCCeEEeccCCCCCCCCCCCCCceeEEEEEeC
Q 016995          160 FMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSN  238 (379)
Q Consensus       160 f~s~~yl~mmw~K~~~l~~vL~lGy-~vLfs~DvDVVWlRNPf~~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst  238 (379)
                      .....+...++.|+.+.. +.  .| .||+. |+|++-++|+-+.|..+.-..+ .|.      ......|+|++.++++
T Consensus        74 ~~~~~~~~~ty~Kl~i~~-l~--~ydkvlYL-DaD~lv~~~id~Lf~~~~~~a~-~~~------~~~~~~nsGv~l~~p~  142 (263)
T d1ll2a_          74 LMKRPELGVTLTKLHCWS-LT--QYSKCVFM-DADTLVLANIDDLFEREELSAA-PDP------GWPDCFNSGVFVYQPS  142 (263)
T ss_dssp             HHHCGGGHHHHHHGGGGG-CT--TCSEEEEE-CTTEEECSCCGGGGGSCSSEEE-ECS------SSTTSEEEEEEEECCC
T ss_pred             hhccccchhhhHHHHHhh-hc--ccceEEEe-CCCEEEecCHHHHhcCCcccee-ccC------CCcccccCCcEEECcc
Confidence            112234456777887754 32  34 48999 9999999999988866543332 222      1235689999999999


Q ss_pred             hhHHHHHHHHHHHHHcCCCCCchHHHHHHHc
Q 016995          239 NRTIEFYKFWYNSRKMFPGLHDQDVLNEIKF  269 (379)
Q Consensus       239 ~rTi~f~~~W~~~r~~~pg~~DQ~vfN~il~  269 (379)
                      ....+-+....... ......||.++|..+.
T Consensus       143 ~~~~~~i~~~~~~~-~~~~~~dq~~ln~~~~  172 (263)
T d1ll2a_         143 VETYNQLLHVASEQ-GSFDGGDQGLLNTFFN  172 (263)
T ss_dssp             HHHHHHHHHHHHHT-CCTTSSHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhh-CCCChhhhhHHHHHHH
Confidence            98877766544322 2233579999999983

PyMOL of d1ll2a_

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure