Citrus Sinensis ID: 017037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MGHRHLFGTSQMFESGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGRGPHKRKSPGVPSVCDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHccccEEEcccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccHHHcccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHcccEccccccccccccEEEEEHEccccccEEEEcccccccHHHHHHHHHHHHcccccEccEcccccccc
Coil and Loop (DISEMBL)
mghrhlfgtsqmfesghdqnwnhlhteqpyanlgdnmslegvhvaphwnpapsssgftsshnadvphyqpdasgpsydpflhpsnagafypvpenyvphaaasnyerqtfhgieggglvdltmangrgphkrkspgvpsvcdrgstsryygagsssdipipsepwqekpnidsqhmpwdrvsmapnyrsSALSIRSEGMQLVAESYssrhsrplsaIAWRhsdrsgrsrmsneryrslsdepslherfssegfmivdrsplygsrgmldqhrdmrldidNMTYEELLALGERigsvstglSEDLISRCLTESIYCSADQMQEEGNCVICleeyknmddvgtlkscghdyhVTCIKKWLsmknvcpickasvmadseke
Flexible Loop (DISEMBL)
MGHRHLFGTSQMFESGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGrgphkrkspgvpsvcdrGSTSRYYGAgsssdipipsepWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESyssrhsrplsaiawrhsdrsgrsrmsneryrslsdepslherfssegfmivdrSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE
Low Complexity Region (SEG)
MGHRHLFGTSQMFESGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGRGPHKRKSPGVPSVCDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE
Disordered region (IsUnstruct)
*************************************************************************************AGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLT**********************************************************************************************************************************FMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV*******
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************MIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTES************NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA**M******
Disordered Region (DISEMBL)
MGHRHLFGTSQMFESGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGR*************CDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLV**********PLSAIAWR**********************SLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS********
Disordered Region (DISPRO)
**************SGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGRGPHKRKSPGVPSVCDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQ***WDRVSM***************M*****SYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHRHLFGTSQMFESGHDQNWNHLHTEQPYANLGDNMSLEGVHVAPHWNPAPSSSGFTSSHNADVPHYQPDASGPSYDPFLHPSNAGAFYPVPENYVPHAAASNYERQTFHGIEGGGLVDLTMANGRGPHKRKSPGVPSVCDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9LT17	340	E3 ubiquitin ligase BIG B	no	no	0.253	0.282	0.402	6e-14
Q8L649	248	E3 ubiquitin ligase BIG B	no	no	0.259	0.395	0.425	2e-13
P87237	821	Uncharacterized RING fing	yes	no	0.312	0.143	0.32	1e-10
Q08CG8	448	RING finger protein 44 OS	no	no	0.248	0.209	0.32	2e-09
E9QAU8	347	RING finger protein 165 O	yes	no	0.235	0.256	0.313	2e-09
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.235	0.257	0.313	3e-09
Q7L0R7	432	RING finger protein 44 OS	no	no	0.248	0.217	0.32	4e-09
Q5R476	986	E3 ubiquitin-protein liga	yes	no	0.251	0.096	0.317	7e-09
Q8BI21	518	RING finger protein 38 OS	no	no	0.267	0.194	0.318	7e-09
Q9C1X4	513	Uncharacterized RING fing	no	no	0.193	0.142	0.381	8e-09

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 275 RLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYK 334
            +D D ++YEELLALG+ +G+ S GLS D I+   ++      +Q     +CVIC  +Y+
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYE 296

Query: 335 NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           + +D+  L  C H YH  CI  WL +  VCP+C A V
Sbjct: 297 DDEDL-ILLPCKHSYHSECINNWLKINKVCPVCSAEV 332

E3 ubiquitin-ligase probably involved in organ size regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 276 LDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESI-YCSADQMQEEGN-CVICLEEY 333
           +D D MTYEEL+ LGE +G+ S GLS++LI    T+   + S    +  G  CVIC  +Y
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKY 204

Query: 334 KNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374
           K  +    L  C H YH  CI KWLS+  VCP+C + V  +
Sbjct: 205 KIGERQMNLP-CKHVYHSECISKWLSINKVCPVCNSEVFGE 244

E3 ubiquitin-ligase that limits organ size, and possibly seed size, in a dose-dependent manner. Negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 261 LYGSRGMLDQHR----DMRLDIDNMTYEELLALGERIGSVSTGL-SEDLISRCLTESIYC 315
           +Y   G+  +H      + L  DN  YE+LLAL   +G     + S + + R      Y 
Sbjct: 696 IYVFGGLFPEHHPVLSTVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYF 755

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKA-SVMA 373
               +    +C+ICLE Y N D    L++C H +H  CI +WL+   N CP+C+A  V  
Sbjct: 756 DDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTT 815

Query: 374 DSEKE 378
            +E+E
Sbjct: 816 QAEEE 820

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
           + LD+D++    YE LL L ER+G     GL++  I + L    +   +   E+  CV+C
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNLENHQSEQTLCVVC 399

Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
             ++++   +  L  C H++H  C+ KWL     CPIC+A
Sbjct: 400 FSDFESRQLLRVLP-CNHEFHAKCVDKWLKTNRTCPICRA 438

Danio rerio (taxid: 7955)

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 282 TYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN------------CVIC 329
           +YEELL L +R+G+V+ G  ++ I R      Y        +G             C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298

Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           L   ++ +DV  L  C H +H  C+ +WL+M   CPIC+  +
Sbjct: 299 LSMLEDGEDVRRL-PCMHLFHQLCVDQWLAMSKKCPICRVDI 339

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 282 TYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN------------CVIC 329
           +YEELL L +R+G+V+ G  ++ I R      Y        +G             C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297

Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           L   ++ +DV  L  C H +H  C+ +WL+M   CPIC+  +
Sbjct: 298 LSMLEDGEDVRRL-PCMHLFHQLCVDQWLAMSKKCPICRVDI 338

Homo sapiens (taxid: 9606)

>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
           + LD+D++    YE LL L ER+G     GL++  I + L    +       E+  CV+C
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQ-LPSYRFNPDSHQSEQTLCVVC 383

Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
             +++    +  L  C H++H  C+ KWL     CPIC+A
Sbjct: 384 FSDFEARQLLRVLP-CNHEFHTKCVDKWLKANRTCPICRA 422

Homo sapiens (taxid: 9606)

>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 12/107 (11%)

Query: 283 YEELLALGERIGSVSTGLSEDLISRCL------TESIYCS-----ADQMQEEGNCVICLE 331
           +EEL+ L ER+G+V+ G S+  I RC          ++C        +   E  C ICL 
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939

Query: 332 EYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
             +  +DV  L  C H +H  C+ +WL     CPIC+  + A    E
Sbjct: 940 ILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 985

Acts in the NODAL pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 274 MRLDIDN---MTYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
             LD+++     YE LL L ER+G     GL++  I + L    +  ++   E+  CV+C
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPSNHQSEQTLCVVC 469

Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA---SVMADSE 376
           + ++++   +  L  C H++H  C+ KWL     CPIC+A    V  DSE
Sbjct: 470 MCDFESRQLLRVLP-CNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE 518

Mus musculus (taxid: 10090)

>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=4 SV=1

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 302 EDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK 361
           ED+I++   +      + + EEG C IC+E +K  DDV  L  C H +H  CIK WL + 
Sbjct: 374 EDVIAKMKVQKP--PKELIDEEGECTICMEMFKINDDVIQLP-CKHYFHENCIKPWLRVN 430

Query: 362 NVCPICKASVMADSEK 377
             C IC+A V  +S++
Sbjct: 431 GTCAICRAPVDPNSQQ 446

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
356572425	549	PREDICTED: uncharacterized protein LOC10	0.513	0.353	0.681	7e-80
4240031	472	DNA binding zinc finger protein (Pspzf)	0.510	0.408	0.702	3e-79
147858806	532	hypothetical protein VITISV_014889 [Viti	0.473	0.336	0.745	1e-78
225439928	546	PREDICTED: uncharacterized protein LOC10	0.441	0.305	0.745	2e-78
558545	549	protein containing C-terminal RING-finge	0.510	0.351	0.693	3e-78
255557042	547	protein binding protein, putative [Ricin	0.502	0.347	0.703	8e-78
356548234	550	PREDICTED: uncharacterized protein LOC10	0.439	0.301	0.725	3e-76
357510627	643	RING finger protein [Medicago truncatula	0.513	0.301	0.658	3e-76
356505204	551	PREDICTED: uncharacterized protein LOC10	0.510	0.350	0.666	5e-75
356537533	516	PREDICTED: uncharacterized protein LOC54	0.486	0.356	0.63	5e-69

>gi|356572425|ref|XP_003554369.1| PREDICTED: uncharacterized protein LOC100803627 [Glycine max]

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 174/201 (86%), Gaps = 7/201 (3%)

Query: 184 APNYRSSALSIR------SEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRS 237
            P +R+S+ S+R       +G+ +VAESYSSRH RPLS I WR+ DR+GRSR+S+ERYRS
Sbjct: 349 TPTFRASS-SLRLGHVTSDDGLPMVAESYSSRHPRPLSTIGWRNGDRNGRSRISSERYRS 407

Query: 238 LSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVS 297
           L++E  LH+RFSSEGFM+V+R+ +YGSR MLDQHRDMR+D+DNM+YEELLALGERIG V+
Sbjct: 408 LTEESGLHDRFSSEGFMVVERASVYGSRNMLDQHRDMRMDVDNMSYEELLALGERIGYVN 467

Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
           TG+SEDL+S+CLTE+IYCS++Q ++EGNCVICLEEYKNMDDVGTL++CGHDYHV+CIKKW
Sbjct: 468 TGVSEDLLSKCLTETIYCSSEQSEDEGNCVICLEEYKNMDDVGTLQTCGHDYHVSCIKKW 527

Query: 358 LSMKNVCPICKASVMADSEKE 378
           LSMK +CPICK S + +  K+
Sbjct: 528 LSMKKLCPICKVSALPEDTKD 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4240031|dbj|BAA74802.1| DNA binding zinc finger protein (Pspzf) [Pisum sativum]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 168/195 (86%), Gaps = 2/195 (1%)

Query: 186 NYRSSALSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLH 245
           N R S       G+ +VAE YSSRH RPL+ + WR+ DR+GRSR+S+ERYRSL+DE  LH
Sbjct: 277 NLRMSHAVPSDNGLPMVAEGYSSRHPRPLTTVGWRNGDRNGRSRISSERYRSLADEAGLH 336

Query: 246 ERFSSE--GFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSED 303
            RFSSE  GFMIV+R+ LYGSR +LDQHRDMR+D+DNM+YEELLALGERIG V+TGLSED
Sbjct: 337 ARFSSEVPGFMIVERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSED 396

Query: 304 LISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV 363
           ++S+CLTE+IYCS+DQ Q+EG+CVICLEEYKNMDDVGTLK+CGHDYHV+CIKKWLSMK +
Sbjct: 397 VLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKL 456

Query: 364 CPICKASVMADSEKE 378
           CPICK+SV+ + +K+
Sbjct: 457 CPICKSSVLPEDKKD 471

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858806|emb|CAN80846.1| hypothetical protein VITISV_014889 [Vitis vinifera]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 159/181 (87%)

Query: 197 EGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIV 256
           EG+QLVAE+YSSRHSRP S + WR+SDR+GRSR+SNER+RSLSDE  + ER +SEG MIV
Sbjct: 350 EGLQLVAENYSSRHSRPFSTVGWRNSDRNGRSRISNERFRSLSDEAGVRERLASEGLMIV 409

Query: 257 DRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCS 316
           DRS LYGSR + DQHR+MRLD+DNM+YEELLALGERIG+V+TGLSED++S+CLTE+IYCS
Sbjct: 410 DRSALYGSRNLFDQHREMRLDVDNMSYEELLALGERIGNVNTGLSEDMMSKCLTETIYCS 469

Query: 317 ADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376
           +DQ+QEEG CVICL+EYKNMDDVGTL +C HDYHV CIKKWL MKN CPICKA  + D  
Sbjct: 470 SDQLQEEGACVICLDEYKNMDDVGTLSACRHDYHVDCIKKWLLMKNSCPICKAPALPDHM 529

Query: 377 K 377
           K
Sbjct: 530 K 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439928|ref|XP_002280200.1| PREDICTED: uncharacterized protein LOC100263731 [Vitis vinifera] gi|297741578|emb|CBI32710.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 159/181 (87%)

Query: 197 EGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIV 256
           EG+QLVAE+YSSRHSRP S + WR+SDR+GRSR+SNER+RSLSDE  + ER +SEG MIV
Sbjct: 364 EGLQLVAENYSSRHSRPFSTVGWRNSDRNGRSRISNERFRSLSDEAGVRERLASEGLMIV 423

Query: 257 DRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCS 316
           DRS LYGSR + DQHR+MRLD+DNM+YEELLALGERIG+V+TGLSED++S+CLTE+IYCS
Sbjct: 424 DRSALYGSRNLFDQHREMRLDVDNMSYEELLALGERIGNVNTGLSEDMMSKCLTETIYCS 483

Query: 317 ADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376
           +DQ+QEEG CVICL+EYKNMDDVGTL +C HDYHV CIKKWL MKN CPICKA  + D  
Sbjct: 484 SDQLQEEGACVICLDEYKNMDDVGTLSACRHDYHVDCIKKWLLMKNSCPICKAPALPDHM 543

Query: 377 K 377
           K
Sbjct: 544 K 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|558545|emb|CAA85321.1| protein containing C-terminal RING-finger [Lotus japonicus] gi|1771195|emb|CAA70734.1| RING-finger protein [Lotus japonicus]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/199 (69%), Positives = 170/199 (85%), Gaps = 6/199 (3%)

Query: 184 APNYRSSA------LSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRS 237
           AP +R+S+      ++   +G+ +VAESYSSRH RPLS+I WR+SDR+GR+R+S+ERYRS
Sbjct: 348 APTFRASSSTHLGHVTPLDDGLPMVAESYSSRHQRPLSSIGWRNSDRNGRARISSERYRS 407

Query: 238 LSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVS 297
           L++E  LH R S E FMIVDR+ +YGSR MLDQHRDMR+DIDNM+YEELLALGERIG V+
Sbjct: 408 LANEAGLHGRISPEVFMIVDRASMYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVN 467

Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
           TGLSED  S+C+TE+IYCS++Q Q+EG+CVICLEEYKNMDDVGTLK+CGHDYHV CIKKW
Sbjct: 468 TGLSEDSFSQCMTETIYCSSEQGQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVNCIKKW 527

Query: 358 LSMKNVCPICKASVMADSE 376
           LSMK +CPICKASVM + +
Sbjct: 528 LSMKKLCPICKASVMPEDK 546

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557042|ref|XP_002519554.1| protein binding protein, putative [Ricinus communis] gi|223541417|gb|EEF42968.1| protein binding protein, putative [Ricinus communis]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 140/199 (70%), Positives = 172/199 (86%), Gaps = 9/199 (4%)

Query: 187 YRSSALSIR-------SEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLS 239
           +R+S+ ++R       ++GMQLVAE+  SR  R  S IAWR+SDR+GRSR+S +RYRS+S
Sbjct: 351 FRASSSTLRLGHVAPSNDGMQLVAET--SRQPRLSSTIAWRNSDRNGRSRVSYDRYRSVS 408

Query: 240 DEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTG 299
           +EP LH+RF+SEG+M+VDRS  YG R M+DQHRDMRLD+DNM+YEELLALGERIG VSTG
Sbjct: 409 NEPGLHDRFASEGYMVVDRSTSYGPRNMVDQHRDMRLDVDNMSYEELLALGERIGCVSTG 468

Query: 300 LSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 359
           LSEDLIS+CLTE++YCS+   Q+EGNCVICLEEYK+MDDVG+LK+CGHDYHV+CIKKWLS
Sbjct: 469 LSEDLISKCLTETVYCSSGLSQDEGNCVICLEEYKDMDDVGSLKACGHDYHVSCIKKWLS 528

Query: 360 MKNVCPICKASVMADSEKE 378
           MKN+CPICKAS MAD+ KE
Sbjct: 529 MKNLCPICKASAMADNMKE 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548234|ref|XP_003542508.1| PREDICTED: uncharacterized protein LOC100786013 [Glycine max]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/182 (72%), Positives = 159/182 (87%)

Query: 197 EGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIV 256
           +G+ +VAESYSSRH RPL+ + W+ +DR GRSR+ ++RYRSL+DE  L+ERF+SEGFMIV
Sbjct: 368 DGLHMVAESYSSRHPRPLTTVGWQSNDRHGRSRIPSDRYRSLADEVGLNERFNSEGFMIV 427

Query: 257 DRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCS 316
           DR+ L GSR MLDQHRDMR+DIDNM+YEELLALGERIG VSTGLSEDLIS+ LTE+IYCS
Sbjct: 428 DRTSLNGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCS 487

Query: 317 ADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376
           ++Q QEE  C ICLEEYKNMDDVGTLK+CGHDYHV CI+KWLSMK VCPICK S ++++ 
Sbjct: 488 SEQSQEEETCAICLEEYKNMDDVGTLKACGHDYHVGCIRKWLSMKKVCPICKVSALSEAN 547

Query: 377 KE 378
           K+
Sbjct: 548 KD 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510627|ref|XP_003625602.1| RING finger protein [Medicago truncatula] gi|355500617|gb|AES81820.1| RING finger protein [Medicago truncatula]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/205 (65%), Positives = 172/205 (83%), Gaps = 11/205 (5%)

Query: 184 APNYRSSALSIR-------SEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYR 236
            P YR+S+ S+R         G+ +VAE Y SRH RPL+ + WR+SDR+GRSR+S+ERYR
Sbjct: 439 TPAYRASS-SLRLGQATPSDNGLPMVAEGYPSRHPRPLNTVGWRNSDRNGRSRISSERYR 497

Query: 237 SLSDEPSLHERFSSE---GFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERI 293
           SL+D+ +LH R SS    GFMIV+R+ LYGSR +LDQHR+MR+DIDNM+YEELLALGERI
Sbjct: 498 SLADQAALHARLSSSEVPGFMIVERASLYGSRNVLDQHREMRMDIDNMSYEELLALGERI 557

Query: 294 GSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTC 353
           G V+TGLSED++S+C+TE+IYCS+DQ Q+EG+CVICLEEYKNMDDVGTLK+CGHDYHV+C
Sbjct: 558 GQVNTGLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSC 617

Query: 354 IKKWLSMKNVCPICKASVMADSEKE 378
           IKKWLSMK +CPICK+S + + +K+
Sbjct: 618 IKKWLSMKKLCPICKSSALPEDKKD 642

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505204|ref|XP_003521382.1| PREDICTED: uncharacterized protein LOC100780416 [Glycine max]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 171/201 (85%), Gaps = 8/201 (3%)

Query: 184 APNYRSSALSIRS------EGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRS 237
            P +R+S+ S+RS      +G+ +VAESYSSR  RPLS I  R+ DR+GRSR+S+ERYRS
Sbjct: 352 TPTFRASS-SLRSGQVTSDDGLPMVAESYSSRLPRPLSTIGRRNGDRNGRSRISSERYRS 410

Query: 238 LSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVS 297
           L+ E  LH+RFSSEGFM+V+R+ +YGSR MLDQHRDMR+D+DNM+YEELLALGERIG V+
Sbjct: 411 LA-ESGLHDRFSSEGFMVVERASVYGSRNMLDQHRDMRMDVDNMSYEELLALGERIGYVN 469

Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
           TG+SED +++CLTE+IYCS++Q Q+EGNCVICLEEYKNMDDVGTLK+CGHDYHV+CIKKW
Sbjct: 470 TGISEDSLNKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKW 529

Query: 358 LSMKNVCPICKASVMADSEKE 378
           LS++ +CPICK S + +  K+
Sbjct: 530 LSLRKLCPICKVSALPEDTKD 550

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537533|ref|XP_003537281.1| PREDICTED: uncharacterized protein LOC547939 [Glycine max]

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/200 (63%), Positives = 158/200 (79%), Gaps = 16/200 (8%)

Query: 184 APNYRSSA------LSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRS 237
            P +R+S+      ++   +G+ +V+ESYSSR  RPL+ + W++++R+GRSR+ ++RYRS
Sbjct: 325 TPTFRASSSLRLGRVAPSDDGLHMVSESYSSRQPRPLTTVGWQNNNRNGRSRIPSDRYRS 384

Query: 238 LSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVS 297
           L DE          GFMIVDR+ LYG R MLD+HRDMR+DIDNM+YEELLALGERIG VS
Sbjct: 385 LDDE----------GFMIVDRTSLYGPRNMLDRHRDMRMDIDNMSYEELLALGERIGHVS 434

Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
           TGLSEDLIS+ LTE+IYCS++Q QEE  C ICLEEYKNMDDVGTLK+CGHDYHV CI+KW
Sbjct: 435 TGLSEDLISKYLTETIYCSSEQSQEEEACAICLEEYKNMDDVGTLKACGHDYHVGCIRKW 494

Query: 358 LSMKNVCPICKASVMADSEK 377
           LSMK VCPICKAS + + +K
Sbjct: 495 LSMKKVCPICKASALPEDKK 514

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2124271	666	MBR2 "MED25 BINDING RING-H2 PR	0.518	0.294	0.399	5.6e-35
TAIR|locus:2159634	525	AT5G10650 [Arabidopsis thalian	0.613	0.441	0.360	1.7e-31
TAIR|locus:2160031	691	AT5G42940 [Arabidopsis thalian	0.423	0.231	0.423	2e-31
TAIR|locus:2028225	645	AT1G45180 [Arabidopsis thalian	0.497	0.291	0.395	3.9e-31
TAIR|locus:2027804	367	AT1G73760 [Arabidopsis thalian	0.312	0.321	0.470	6.8e-30
TAIR|locus:2149378	520	AT5G24870 [Arabidopsis thalian	0.711	0.517	0.336	2.2e-29
TAIR|locus:2125284	497	AT4G31450 [Arabidopsis thalian	0.330	0.251	0.496	2.2e-28
TAIR|locus:2030933	368	AT1G17970 [Arabidopsis thalian	0.349	0.358	0.439	9.7e-25
TAIR|locus:2009660	494	AT1G53190 [Arabidopsis thalian	0.288	0.220	0.450	4.2e-24
TAIR|locus:2086305	486	AT3G15070 [Arabidopsis thalian	0.306	0.238	0.471	5e-24

TAIR|locus:2124271 MBR2 "MED25 BINDING RING-H2 PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
 Identities = 83/208 (39%), Positives = 120/208 (57%)

Query:   169 PNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESYSSRHSRPLS-AIAWRHSDRSGR 227
             P++ S        S + ++RS     R  G+ L  ++    H R L  ++A   +D  GR
Sbjct:   467 PSVSSNEAAAPSGSSSRSHRSRQ---RRSGLLLERQN-DHLHLRHLGRSLA---ADNDGR 519

Query:   228 SRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELL 287
             +R+ +E  R +       E    E +M+ D     G   M D+HRDMRLD+DNM+YEELL
Sbjct:   520 NRLISE-IRQVLSAMRRGENLRFEDYMVFDPLIYQGMAEMHDRHRDMRLDVDNMSYEELL 578

Query:   288 ALGERIGSVSTGLSEDLISRCLTESIYCS--ADQMQEEGNCVICLEEYKNMDDVGTLKSC 345
             ALGERIG VSTGLSE++I + + +  + S  A   Q+   C +C EEY   DD+GTL  C
Sbjct:   579 ALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTL-GC 637

Query:   346 GHDYHVTCIKKWLSMKNVCPICKASVMA 373
             GH++H  C+K+WL +KN+CPICK   ++
Sbjct:   638 GHEFHTACVKQWLMLKNLCPICKTVALS 665

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2159634 AT5G10650 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 96/266 (36%), Positives = 141/266 (53%)

Query:   132 RKSPGVPSVCDRGST-------SRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMA 184
             R++  VPS+ D  +        + Y+G          S   ++ P+  +   P   +S  
Sbjct:   272 RRNRVVPSIRDSSTVVSNGCRRAGYFGRSERLGATASSATSRQMPHPTTPTDPNPSLSFC 331

Query:   185 P-NYRSSALSIRSE--GMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDE 241
             P N  SS   + S   G    A+  SS  +R        H + +G + +     R   DE
Sbjct:   332 PSNIYSSTGRVHSNMPGSPTEADPSSSLVNRD----GLSHYNMNGIAEVLLALERIEHDE 387

Query:   242 PSLHERFSSEGFMIVDRSPLYGSRGML---DQHRDMRLDIDNMTYEELLALGERIGSVST 298
                +E+ +S     ++ + L+ S GM    DQHRDMRLDIDNM+YEELLALG+++G+VST
Sbjct:   388 ELTYEQLAS-----IETN-LFSS-GMFRFYDQHRDMRLDIDNMSYEELLALGDKMGTVST 440

Query:   299 GLSEDLISRCLTESIYCSADQM-------QEEGNCVICLEEYKNMDDVGTLKSCGHDYHV 351
              LSE+ +SR L +SIY   D+         ++  C IC EEY + D++GT+  C H YHV
Sbjct:   441 ALSEEALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIP-CQHMYHV 499

Query:   352 TCIKKWLSMKNVCPICKASVMADSEK 377
             +C+++WL MKN CPICK S  A+ EK
Sbjct:   500 SCVQQWLRMKNWCPICKTS--AEEEK 523

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006914 "autophagy" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2160031 AT5G42940 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
 Identities = 72/170 (42%), Positives = 109/170 (64%)

Query:   213 PLSAIAWRHSDRSGRSRMSNERYRSLSD---EPSLHERFSSEGFMIVDRSPLY-GSRGML 268
             PL A+A   + R GRSR+   + +++ D     + +     E  M+++ S L+ G+ G  
Sbjct:   523 PLRALA--AASR-GRSRLMVSQMQNVLDVMRRDANNNNLRLEDVMLLNHSVLFDGATGH- 578

Query:   269 DQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN-CV 327
             D++RDMRLD+DNM+YEELLAL ERIG V TG++E+ IS  L +  Y S  +  ++   C 
Sbjct:   579 DRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCC 638

Query:   328 ICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK 377
             +C EEY   +D+GTL+ CGH++H  CIK+WL  KN+CPICK + +  ++K
Sbjct:   639 VCQEEYTEGEDMGTLE-CGHEFHSQCIKEWLKQKNLCPICKTTGLNTAKK 687

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2028225 AT1G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 3.9e-31, P = 3.9e-31
 Identities = 79/200 (39%), Positives = 114/200 (57%)

Query:   179 DRVSMAPNYRSSALSIRSEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSL 238
             D  S   N  SS    R +G      S+S R       +A   S   GR+RM     R++
Sbjct:   454 DNTSQVHNRASSRAGPR-QGQDATGISHSLR------GLA---STSRGRTRMGASEIRNI 503

Query:   239 SDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVST 298
              +          E  M++++S + G+  + D++RDMRLD+DNMTYEELL+L ERIG V T
Sbjct:   504 LEHMRRAGNLRLEDVMLLNQSIMLGAADIHDRYRDMRLDVDNMTYEELLSLEERIGDVCT 563

Query:   299 GLSEDLISRCLTESIYCSADQMQEEGN-CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
             GL+E+ IS  L +  Y S+ +  +E   C +C EEYK  +++G L+ CGHD+H  CIK+W
Sbjct:   564 GLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLE-CGHDFHSQCIKEW 622

Query:   358 LSMKNVCPICKASVMADSEK 377
             L  KN+CPICK + +  + K
Sbjct:   623 LKQKNLCPICKTTGLNTANK 642

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2027804 AT1G73760 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 56/119 (47%), Positives = 77/119 (64%)

Query:   250 SEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCL 309
             +E  M+ +   + G     DQ RDMRL++DNMTYE+LL LGERIG V+TGL+E  I  CL
Sbjct:   243 AEMMMMQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQIKSCL 302

Query:   310 TESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 368
              +   C  D    +  C+IC +EY+  D+VG L+ CGH +H+ C+ +WL  KN CP+CK
Sbjct:   303 RKVKPCRQDTTVADRKCIICQDEYEAKDEVGELR-CGHRFHIDCVNQWLVRKNSCPVCK 360

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2149378 AT5G24870 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 100/297 (33%), Positives = 149/297 (50%)

Query:   100 AAASNYERQTFHGIEGGGLVDLTMANG-RGPHKRKSPGVPSVCDRG----STSR---YYG 151
             +++S+   +T   + GG  +     NG      R++  +PSV D      ST R   YYG
Sbjct:   227 SSSSSRGNKTEGSVVGGKNISSPQGNGITMSEPRRNRNLPSVRDNSVVSSSTRRSTGYYG 286

Query:   152 ----AGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIRSEGMQLVAESYS 207
                 AG+ + +  P  P +   N  S+     R  +    R  + + R   + +      
Sbjct:   287 RTGRAGAVATLQAPRPPTRADLN-PSRSAEASRSPLNSYSRPISSNGRLRSLMMPGSPSE 345

Query:   208 SRHSRPL-SAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRG 266
             +  SR L +   +R  + +G + +     R   DE   +E+ +    ++     L G   
Sbjct:   346 AGLSRSLMNRDTFRRYNMNGVAEVLLALERIEQDEELTYEQLA----VLETNLFLNGMSS 401

Query:   267 MLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQE---- 322
               DQHRDMRLDIDNM+YEELLAL E++G+VST LSE+ + + L  SIY   D+  +    
Sbjct:   402 FHDQHRDMRLDIDNMSYEELLALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLN 461

Query:   323 ---EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376
                +  C IC EEY + D+VGTL  C H YHV+C ++WL MKN CPICK S  A+S+
Sbjct:   462 KDDDVKCSICQEEYVDGDEVGTLP-CQHKYHVSCAQQWLRMKNWCPICKTS--AESQ 515

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125284 AT4G31450 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 68/137 (49%), Positives = 86/137 (62%)

Query:   251 EGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLT 310
             E  +I++   L G     DQHRDMRLDIDNM+YEELLAL ERIG+VST L+E+ IS+CL 
Sbjct:   362 EDLLIMETGLLLGGLSFHDQHRDMRLDIDNMSYEELLALEERIGTVSTALTEEAISKCLK 421

Query:   311 ESIYC-----------SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 359
              SIY            S    +E+  C IC EEY   D+VG L  C H YHV C+++WL 
Sbjct:   422 TSIYQMKPLSYGSITKSPSDNKEDAKCSICQEEYTIGDEVGRLH-CEHTYHVKCVQEWLR 480

Query:   360 MKNVCPICKASVMADSE 376
             +K+ CPICKA+    S+
Sbjct:   481 IKSWCPICKATAETSSK 497

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2030933 AT1G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/141 (43%), Positives = 86/141 (60%)

Query:   228 SRMSNERYRSLSDEPSLHERFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELL 287
             SR      RS  D+ +   R    GF ++ R  +  SR   D + ++RLD+D+M+YE+LL
Sbjct:   230 SRCRGHLPRSYPDDLT-EMRMLQNGF-VMGR--ITDSR---DNYHELRLDVDSMSYEQLL 282

Query:   288 ALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGH 347
              LG+RIG V+TGL E  I RCL + I  S      +  C IC +EY+  D+VG L +CGH
Sbjct:   283 ELGDRIGYVNTGLKESEIHRCLGK-IKPSVSHTLVDRKCSICQDEYEREDEVGEL-NCGH 340

Query:   348 DYHVTCIKKWLSMKNVCPICK 368
              +HV C+K+WLS KN CP+CK
Sbjct:   341 SFHVHCVKQWLSRKNACPVCK 361

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2009660 AT1G53190 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 55/122 (45%), Positives = 79/122 (64%)

Query:   268 LDQHRDMRLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN-- 325
             +D HRDMRLDI+ M+YEELLAL ERIG+V+TGL E+ +   L ++  CS    ++E +  
Sbjct:   374 IDHHRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNHL-KTRTCSGINFEKESSSP 432

Query:   326 ---------CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376
                      C IC E +KN + + TL  CGH+YH  C++KWL +KNVCPICK+  +   +
Sbjct:   433 RTKDLETEPCTICQESFKNEEKIATL-DCGHEYHAECLEKWLIVKNVCPICKSEALVMEK 491

Query:   377 KE 378
             ++
Sbjct:   492 RK 493

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2086305 AT3G15070 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 5.0e-24, P = 5.0e-24
 Identities = 58/123 (47%), Positives = 77/123 (62%)

Query:   262 YGSRGMLDQHRDMRLDIDNMTYEELLALGERIGSVSTGLS-ED---LISRCLTESIYCSA 317
             Y +   +D H+DMRLDI++M+YEELLAL ++IG+V TGLS ED   L+ R  +  I    
Sbjct:   358 YNAVNYVDHHQDMRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRTSTRINLEE 417

Query:   318 DQMQ--EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
                   E  +C IC E YKN D + TL  C H YH  C+KKWL +KNVCPICK+  +   
Sbjct:   418 GPSTDLETDSCTICQENYKNEDKIATL-DCMHKYHAECLKKWLVIKNVCPICKSEALVIE 476

Query:   376 EKE 378
             +K+
Sbjct:   477 KKK 479

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023172001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (412 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	6e-12
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	9e-09
smart00184	40	smart00184, RING, Ring finger	1e-08
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-07
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-05
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	1e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-05
pfam12906	47	pfam12906, RINGv, RING-variant domain	0.003
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	0.003
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 370
             C ICL+E++  ++V  L  CGH +H  C+ KWL   N CP+C+A 
Sbjct: 1   DECPICLDEFEPGEEVVVL-PCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASV 371
           C ICLEE+    +   L  CGH +  +CI KWL S KN CP+C+  +
Sbjct: 2   CPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
           EE  C ICL+  ++      L  CGH +   CI ++L  K+ CPIC+ 
Sbjct: 1   EELECPICLDLLRDP---VVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 322 EEGNCVICLEEYKNMDDVGTLKS-----------CGHDYHVTCIKKWLSMKNVCPICK 368
           E+  C IC   +         KS           CGH +H+ CI +WL  +N CP+C+
Sbjct: 18  EDDVCAICRNHF--DGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPIC 367
           C ICLEEY  + D   L  CGH +  +CI+KWL   N  CPIC
Sbjct: 1   CPICLEEY--LKDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 26/163 (15%)

Query: 232 NERYRSLSDEPSLHE---RFSSEGFMIVDRSPLYGSRGMLDQHRDMRLDIDNMTYEELLA 288
           N   R   DE S +        +G  ++  S L+         R + + +    Y    A
Sbjct: 197 NYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMY--QFPYVR-VPIYLIRQMYTCFYA 253

Query: 289 LGERIGSVST--GLSEDLISRCLTESIYCSADQMQ---EEGNCVICLEE---------YK 334
           L  RI   +     ++DL       ++Y +A + Q    +  C IC++E          +
Sbjct: 254 LFRRIREHARFRRATKDL------NAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPR 307

Query: 335 NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK 377
            +D       CGH  H+ C+K WL  +  CPIC+  V+ D   
Sbjct: 308 GLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPIC 367
           C ICLEE K   D  T+  CGH +   CI  WL   NV CP+C
Sbjct: 1   CPICLEEPK---DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIK--KWLSMKNVCPICKASV 371
           E+  CVICLE  +N+        CGH     C +  K L  K  CPIC+  +
Sbjct: 1   EDDLCVICLERPRNV----VFLPCGH--LCLCEECAKRLRSKKKCPICRQPI 46

Length = 49

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASV 371
           C IC+  +   D +  L  C H +HV C+ KWL    N CP+C+ ++
Sbjct: 326 CAICMSNFIKNDRLRVL-PCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 322 EEGNCVICLEE-Y-KNMDDV--GTLKSCGHDYHVTCIKKWLSMKNVCPICK 368
           ++  C IC+E+ Y K + ++  G L +C H + + CI  W   KN CP+C+
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 345 CGHDYHVTCIKKWLSMKNVCPICKAS-VMADSEKE 378
           C H +H  CI +WL  K VCP+ + + V+AD    
Sbjct: 54  CNHAFHDHCIYRWLDTKGVCPLDRQTWVLADGGAI 88

Length = 88

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 11/50 (22%)

Query: 326 CVICLEEYKNMDDVGTLK---SCGHDY---HVTCIKKWLSMKNV--CPIC 367
           C ICLE     ++   L     C       H +C+++WL       C IC
Sbjct: 1   CRICLEG---EEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 13/52 (25%)

Query: 326 CVICLEEYKNMDDV-------GTLKSCGHDYHVTCIKKWLSMKN--VCPICK 368
           C IC +E    D +       G+LK      H  C+++W++      C ICK
Sbjct: 2   CRICHDEGDEGDPLVSPCRCKGSLKYV----HQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 320 MQEEGNCVICLEEYKNM--------DDVG-TLKSCGHDYHVTCIKKWL---SMKNVCPIC 367
              +  C IC   +           DD       C H++H+ CI KWL   + K +CP+C
Sbjct: 18  TPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMC 77

Query: 368 KAS 370
           + +
Sbjct: 78  RQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.53
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.43
PHA02929	238	N1R/p28-like protein; Provisional	99.23
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.2
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.19
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.02
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.93
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.92
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.9
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.89
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.85
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.82
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.8
PHA02926	242	zinc finger-like protein; Provisional	98.77
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.75
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.71
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.67
PF14634	44	zf-RING_5: zinc-RING finger domain	98.62
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.55
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.54
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.54
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.53
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.51
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.33
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.28
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.28
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.19
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.15
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.06
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.01
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.94
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.92
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.89
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.88
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.88
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.84
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.54
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.52
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.46
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.35
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.99
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.93
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.75
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.74
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.57
KOG2660	331	consensus Locus-specific chromosome binding protei	96.38
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.29
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.11
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.09
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.89
PHA02862	156	5L protein; Provisional	95.76
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.74
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.64
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.57
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.49
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.48
COG5152	259	Uncharacterized conserved protein, contains RING a	95.46
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.42
PHA03096	284	p28-like protein; Provisional	95.27
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.06
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.03
PF04641	260	Rtf2: Rtf2 RING-finger	94.89
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.72
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.33
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.33
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.15
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.08
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.97
KOG1940	276	consensus Zn-finger protein [General function pred	93.43
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.42
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.98
COG5222	427	Uncharacterized conserved protein, contains RING Z	92.86
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.35
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.35
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.8
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.68
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	91.34
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.13
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.1
KOG1609	323	consensus Protein involved in mRNA turnover and st	90.92
KOG0298	1394	consensus DEAD box-containing helicase-like transc	90.12
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	89.9
KOG3002	299	consensus Zn finger protein [General function pred	89.77
KOG3053	293	consensus Uncharacterized conserved protein [Funct	89.52
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	88.12
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	87.75
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.34
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	87.1
KOG0825	1134	consensus PHD Zn-finger protein [General function	86.35
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	86.11
KOG3899	381	consensus Uncharacterized conserved protein [Funct	85.82
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	84.56
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	84.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	83.6
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.39
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	83.19
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	81.1

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=6.9e-15  Score=146.59  Aligned_cols=76  Identities=33%  Similarity=0.779  Sum_probs=59.2

Q ss_pred             CCCCHHHHHhhccceeeecccccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCCCC
Q 017037          298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMADS  375 (378)
Q Consensus       298 tGlSee~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~~~  375 (378)
                      ..+.+..+++++........+... ...|+||||+|+.||+++.| ||+|.||..||++||.+.. .||+||+++..+.
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~-~~~CaIClEdY~~GdklRiL-PC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDA-TDTCAICLEDYEKGDKLRIL-PCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCC-CceEEEeecccccCCeeeEe-cCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            456777777766655432222222 26899999999999999998 8999999999999999875 5999999887654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.43  E-value=4.5e-14  Score=100.77  Aligned_cols=44  Identities=48%  Similarity=1.199  Sum_probs=39.6

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK  368 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR  368 (378)
                      +.|+||+++|..++.+..+ +|+|.||.+||.+|++.+++||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCCcCCccC
Confidence            3799999999988888888 6999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.23  E-value=5.6e-12  Score=120.59  Aligned_cols=76  Identities=21%  Similarity=0.544  Sum_probs=55.9

Q ss_pred             CCCCCHHHHHhhccceeeec-ccccCCCCccceecccccCCC----ceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          297 STGLSEDLISRCLTESIYCS-ADQMQEEGNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       297 ~tGlSee~I~~ll~~~~~~~-~~~~~ed~~C~ICLeef~~ge----~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      +.+.++..+..++......+ ......+..|+||++.+.+++    .++++++|+|.||..||.+|++.+.+||+||..+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            35557777777665432211 112335688999999987643    2456778999999999999999999999999987


Q ss_pred             C
Q 017037          372 M  372 (378)
Q Consensus       372 ~  372 (378)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            4

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=8e-12  Score=122.11  Aligned_cols=52  Identities=33%  Similarity=0.933  Sum_probs=47.1

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMAD  374 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~~  374 (378)
                      ...+|+||++.|..+++++++ ||.|.||..||++|+. .++.||+||.++++.
T Consensus       322 ~GveCaICms~fiK~d~~~vl-PC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp  374 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVL-PCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP  374 (374)
T ss_pred             CCceEEEEhhhhcccceEEEe-ccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence            347899999999999998888 8999999999999998 689999999999863

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.19  E-value=1.3e-11  Score=97.96  Aligned_cols=48  Identities=35%  Similarity=0.915  Sum_probs=37.6

Q ss_pred             CCCCccceecccccCC---------CceeeecccCCcccHHHHHHHHhcCCCCCccC
Q 017037          321 QEEGNCVICLEEYKNM---------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK  368 (378)
Q Consensus       321 ~ed~~C~ICLeef~~g---------e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR  368 (378)
                      ..++.|+||++.+.+.         +....+.+|+|.||..||.+||+.+++||+||
T Consensus        17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3455699999999432         23445558999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.6e-10  Score=112.30  Aligned_cols=52  Identities=31%  Similarity=0.772  Sum_probs=45.0

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .....+|.|||+....+    ..+||||+||+.||..|...+..||+||..+.+.+
T Consensus       236 ~~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            34567899999998765    45599999999999999999999999999987754

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.4e-10  Score=111.90  Aligned_cols=53  Identities=36%  Similarity=0.956  Sum_probs=42.8

Q ss_pred             cCCCCccceeccc-ccCC--------C-ceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          320 MQEEGNCVICLEE-YKNM--------D-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       320 ~~ed~~C~ICLee-f~~g--------e-~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ...+..|.||+|+ +..+        + +..+| ||||.+|.+|++.|+.++.+|||||.++.-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            3467889999999 4443        1 23455 899999999999999999999999999543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=5.6e-10  Score=105.76  Aligned_cols=52  Identities=37%  Similarity=0.768  Sum_probs=41.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc---CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~---k~sCPICR~~l~~~~  375 (378)
                      ....-.|.||||.-+++  |  ++.|||.||+.||.+||..   ++.||+||..|..+.
T Consensus        44 ~~~~FdCNICLd~akdP--V--vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~   98 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP--V--VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT   98 (230)
T ss_pred             CCCceeeeeeccccCCC--E--EeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence            34556899999998764  4  3359999999999999986   456999999886553

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.90  E-value=1.1e-09  Score=101.91  Aligned_cols=50  Identities=32%  Similarity=0.802  Sum_probs=40.2

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc----------------CCCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM----------------KNVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~----------------k~sCPICR~~l~~~  374 (378)
                      .++..|+||++.++++    ++++|+|.||..||.+|+..                +..||+||..+...
T Consensus        16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            4567899999998764    33479999999999999852                24799999988653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.89  E-value=1.4e-09  Score=74.95  Aligned_cols=44  Identities=45%  Similarity=1.156  Sum_probs=36.4

Q ss_pred             ccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCccc
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASV  371 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l  371 (378)
                      .|+||++.+.   ....+++|+|.||..|++.|++. ...||+||..+
T Consensus         1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh---CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5999999983   23345479999999999999997 77899999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.85  E-value=1.6e-09  Score=79.41  Aligned_cols=46  Identities=35%  Similarity=0.859  Sum_probs=38.2

Q ss_pred             CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      +..|.||++....   +..+ ||+|. ||..|+.+|++.+..||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLL-PCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEE-TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEe-CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            5789999998664   4444 89999 999999999999999999999874

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.82  E-value=2.7e-09  Score=87.35  Aligned_cols=52  Identities=33%  Similarity=0.765  Sum_probs=41.3

Q ss_pred             CCCCccceecccccC--------CC-ceeeecccCCcccHHHHHHHHhc---CCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKN--------MD-DVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~--------ge-~v~~LlpCgH~FH~~CI~kWLk~---k~sCPICR~~l~  372 (378)
                      ..++.|.||...|+.        ++ ...++..|+|.||..||.+||..   +..||+||++..
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            347889999999874        22 23345589999999999999975   568999999864

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.80  E-value=3.4e-09  Score=73.95  Aligned_cols=39  Identities=38%  Similarity=1.049  Sum_probs=32.3

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPIC  367 (378)
                      |+||++.+.+   ..++++|||.||..||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999886   33345899999999999999998899998

>PHA02926 zinc finger-like protein; Provisional

Probab=98.77  E-value=3.8e-09  Score=99.94  Aligned_cols=53  Identities=34%  Similarity=0.787  Sum_probs=41.8

Q ss_pred             cCCCCccceecccccCC-----CceeeecccCCcccHHHHHHHHhcC------CCCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNM-----DDVGTLKSCGHDYHVTCIKKWLSMK------NVCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~g-----e~v~~LlpCgH~FH~~CI~kWLk~k------~sCPICR~~l~  372 (378)
                      ...+..|+||+|..-++     ...+.|.+|+|.||..||.+|.+.+      .+||+||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34578999999987432     2356788999999999999999753      45999998753

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.7e-09  Score=96.23  Aligned_cols=51  Identities=31%  Similarity=0.692  Sum_probs=42.6

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      .....|+|||+.+.+.  +.+-++|||+||..||+.-|+....||+|++.|..
T Consensus       129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            3447899999999864  43445899999999999999999999999987653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.2e-09  Score=110.46  Aligned_cols=50  Identities=32%  Similarity=0.934  Sum_probs=43.3

Q ss_pred             CCCccceecccccCCCc--eeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDD--VGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~--v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .+..|+||+|++..+.+  ..+| +|+|.||..|+++|++++++||+||..+.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             cCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            47889999999998654  4556 89999999999999999999999999543

>smart00504 Ubox Modified RING finger domain

Probab=98.67  E-value=2.1e-08  Score=75.61  Aligned_cols=48  Identities=25%  Similarity=0.441  Sum_probs=41.0

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ..|+||++.+.++    ++.+|||+|+..||.+|++.+..||+|+..+..++
T Consensus         2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            4799999999875    34489999999999999998889999999885443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.62  E-value=2.6e-08  Score=71.39  Aligned_cols=44  Identities=39%  Similarity=0.899  Sum_probs=36.3

Q ss_pred             ccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCc
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA  369 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~  369 (378)
                      .|.||++.|.. +....+++|+|.||..||.++......||+||+
T Consensus         1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999943 344556699999999999999866678999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.55  E-value=3.7e-08  Score=68.78  Aligned_cols=39  Identities=41%  Similarity=1.095  Sum_probs=33.0

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHh--cCCCCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS--MKNVCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk--~k~sCPIC  367 (378)
                      |+||++.+....   .+++|+|.||..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988642   3558999999999999998  45679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.54  E-value=4.3e-08  Score=70.06  Aligned_cols=38  Identities=34%  Similarity=0.927  Sum_probs=28.9

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPIC  367 (378)
                      |+||++.|.++   ..| +|||.|+..||.+|.+..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---ccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999975   334 899999999999999763    359998

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.54  E-value=5.4e-08  Score=99.45  Aligned_cols=51  Identities=29%  Similarity=0.694  Sum_probs=43.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      ......|+||++.|..+    ++++|+|.||..||..|+.....||+||..+...
T Consensus        23 Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            44567899999999865    2458999999999999999888999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.53  E-value=4.6e-08  Score=79.19  Aligned_cols=48  Identities=29%  Similarity=0.627  Sum_probs=35.4

Q ss_pred             ccceecccccCCC-ceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          325 NCVICLEEYKNMD-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       325 ~C~ICLeef~~ge-~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .|+-|+.....++ ...+...|.|.||..||.+||..++.||+||++..
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            3444444333333 44455579999999999999999999999999864

>smart00184 RING Ring finger

Probab=98.51  E-value=9.3e-08  Score=63.48  Aligned_cols=38  Identities=58%  Similarity=1.282  Sum_probs=31.3

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPIC  367 (378)
                      |+||++...   .+..+ +|+|.||..||+.|++ .+..||+|
T Consensus         1 C~iC~~~~~---~~~~~-~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK---DPVVL-PCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCC---CcEEe-cCCChHHHHHHHHHHHhCcCCCCCC
Confidence            889999833   34445 8999999999999998 56779998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.3e-07  Score=75.94  Aligned_cols=52  Identities=29%  Similarity=0.692  Sum_probs=40.6

Q ss_pred             CCCCccceecccccC---------CCceeeecccCCcccHHHHHHHHhc---CCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKN---------MDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~---------ge~v~~LlpCgH~FH~~CI~kWLk~---k~sCPICR~~l~  372 (378)
                      ..++.|.||.-.|..         .+...++..|.|.||..||.+||..   +..||+||++..
T Consensus        18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            455689999998865         2334455579999999999999965   457999999864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3.8e-07  Score=88.18  Aligned_cols=51  Identities=31%  Similarity=0.787  Sum_probs=42.3

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHH-HHhcCCC-CCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WLSMKNV-CPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~k-WLk~k~s-CPICR~~l~~~~  375 (378)
                      ..+.+|.||++.....    ..++|||+||..||.. |-+++.. ||+||+.+.+++
T Consensus       213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            4578899999997754    4458999999999999 9888766 999999887654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.28  E-value=4.6e-07  Score=65.39  Aligned_cols=39  Identities=28%  Similarity=0.718  Sum_probs=23.2

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCC
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCP  365 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCP  365 (378)
                      |+||.+ |...+...++++|||+|+.+||+++++..    -.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 87766555555899999999999999853    2476

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.8e-07  Score=94.07  Aligned_cols=49  Identities=29%  Similarity=0.699  Sum_probs=39.6

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-----CCCCccCcccCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-----NVCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-----~sCPICR~~l~~~~  375 (378)
                      +..|+|||+.....    .++.|||+||..||.+++...     ..||+|+..|...+
T Consensus       186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            67899999997654    444699999999999988653     46999999886644

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5.1e-07  Score=93.47  Aligned_cols=52  Identities=27%  Similarity=0.759  Sum_probs=40.9

Q ss_pred             CCCccceecccccCCC-----c--------eeeecccCCcccHHHHHHHHh-cCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMD-----D--------VGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge-----~--------v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~  373 (378)
                      ....|+||+.++..-.     .        -..++||.|+||..|+.+|.. .|-.||+||..+++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            4457999999875411     1        134569999999999999998 56799999999875

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.19  E-value=4.3e-07  Score=90.54  Aligned_cols=51  Identities=31%  Similarity=0.698  Sum_probs=44.4

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE  376 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e  376 (378)
                      .-..|.||.+-|..+    +++||+|.||.-||.+.|..+..||.|+.++.....
T Consensus        22 ~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            346899999999865    666999999999999999999999999998876554

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.15  E-value=1.7e-06  Score=63.92  Aligned_cols=42  Identities=31%  Similarity=0.785  Sum_probs=31.9

Q ss_pred             ccceecccccCCCceeeecccC-----CcccHHHHHHHHhcC--CCCCccC
Q 017037          325 NCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMK--NVCPICK  368 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k--~sCPICR  368 (378)
                      .|.||++. .+++...+. ||.     |.+|..||.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~~-~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48999993 333444455 785     889999999999654  5899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.2e-06  Score=79.89  Aligned_cols=45  Identities=36%  Similarity=0.854  Sum_probs=38.8

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCc
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA  369 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~  369 (378)
                      .+...|+||++.|..+    ++++|+|.||..||..++...-.||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            4567899999999987    44589999999999999985567999993

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.5e-06  Score=72.31  Aligned_cols=36  Identities=31%  Similarity=0.769  Sum_probs=30.9

Q ss_pred             CCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          336 MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       336 ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      .+.+.....|.|.||..||.+||++++.||+|.++-
T Consensus        72 ~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   72 EECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             CceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            445556668999999999999999999999998764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.01  E-value=2.5e-06  Score=67.47  Aligned_cols=48  Identities=23%  Similarity=0.436  Sum_probs=36.4

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD  374 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~  374 (378)
                      ...|+||.+.+.++    ++++|||.|...||.+||+. ...||+|+..+...
T Consensus         4 ~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            46799999999975    33489999999999999998 78999999887654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=5.3e-06  Score=83.20  Aligned_cols=46  Identities=35%  Similarity=0.717  Sum_probs=39.2

Q ss_pred             CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ..+|.|||.+-++   +.+| ||.|. .|..|.+..--+.+.|||||+.+.
T Consensus       290 gkeCVIClse~rd---t~vL-PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRD---TVVL-PCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcc---eEEe-cchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            5689999999774   4455 99999 999999997777899999999874

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.92  E-value=2.4e-06  Score=93.82  Aligned_cols=54  Identities=22%  Similarity=0.780  Sum_probs=40.9

Q ss_pred             ccCCCCccceecccccCCC-c--eeeecccCCcccHHHHHHHHhc--CCCCCccCcccC
Q 017037          319 QMQEEGNCVICLEEYKNMD-D--VGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       319 ~~~ed~~C~ICLeef~~ge-~--v~~LlpCgH~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      .....++|+||...+..-+ +  -.++..|+|.||..||.+|++.  ++.||+||.++.
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3456789999998876211 1  1245579999999999999987  467999998874

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.89  E-value=4.6e-06  Score=81.92  Aligned_cols=47  Identities=26%  Similarity=0.633  Sum_probs=41.0

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      -..|-||-+.|..+    .+++|||.||.-||...|..+..||+||.+...
T Consensus        25 ~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          25 MLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            46799999998854    566999999999999999999999999987543

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.88  E-value=2.9e-06  Score=66.98  Aligned_cols=50  Identities=28%  Similarity=0.755  Sum_probs=23.9

Q ss_pred             CCccceecccccCCCce--eee--cccCCcccHHHHHHHHhc--C---------CCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDV--GTL--KSCGHDYHVTCIKKWLSM--K---------NVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v--~~L--lpCgH~FH~~CI~kWLk~--k---------~sCPICR~~l~  372 (378)
                      +..|.||.+.+...+++  .+.  ..|+..||..||.+||..  +         ..||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            46899999987633322  222  269999999999999963  1         13999999874

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=4e-06  Score=81.56  Aligned_cols=52  Identities=31%  Similarity=0.688  Sum_probs=42.7

Q ss_pred             cCCCCccceecccccCCC-------ceeeecccCCcccHHHHHHHHh--cCCCCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNMD-------DVGTLKSCGHDYHVTCIKKWLS--MKNVCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge-------~v~~LlpCgH~FH~~CI~kWLk--~k~sCPICR~~l~  372 (378)
                      ..++..|+||-..+...+       ++.+| .|+|+||..||+-|-.  +|.+||.||..+.
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            346788999998887654       66777 7999999999999964  5788999998764

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.84  E-value=4.9e-06  Score=81.99  Aligned_cols=55  Identities=27%  Similarity=0.806  Sum_probs=44.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh-----------------------cCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----------------------MKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----------------------~k~sCPICR~~l~~~~  375 (378)
                      ......|+|||--|.+++.+.+. +|-|.||..|+.++|.                       .+..|||||..|..+.
T Consensus       112 n~p~gqCvICLygfa~~~~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  112 NHPNGQCVICLYGFASSPAFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCCCCceEEEEEeecCCCceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            44668899999999999878776 8999999999987761                       1235999999886554

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=3.3e-06  Score=84.61  Aligned_cols=51  Identities=33%  Similarity=0.630  Sum_probs=41.7

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~  374 (378)
                      ..+..|+|||+-++.   .+..+.|.|.||.+||.+-|+. .+.||.||+.+...
T Consensus        41 ~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   41 DIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            346789999999885   2334479999999999999976 67899999988654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.2e-05  Score=81.05  Aligned_cols=51  Identities=31%  Similarity=0.884  Sum_probs=40.5

Q ss_pred             CCCCccceecccccCCC----ceeeecccCCcccHHHHHHHH--hc-----CCCCCccCccc
Q 017037          321 QEEGNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWL--SM-----KNVCPICKASV  371 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge----~v~~LlpCgH~FH~~CI~kWL--k~-----k~sCPICR~~l  371 (378)
                      ..+..|.||++...+..    ..+.|++|.|.||..||.+|-  ++     .+.||+||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            45788999999987642    135667899999999999998  33     46799999854

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.54  E-value=3.4e-05  Score=79.47  Aligned_cols=50  Identities=28%  Similarity=0.731  Sum_probs=39.0

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .+-..|+||||.......-.+...|.|.||..|+.+|-  ..+||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            45678999999998754322223699999999999995  478999998665

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.52  E-value=1.8e-05  Score=85.91  Aligned_cols=51  Identities=18%  Similarity=0.470  Sum_probs=43.0

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ....|+|||..+.++...... +|+|.||..||..|-+.-.+||+||.++..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k-~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEK-HTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhcccc-ccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            346799999999886544444 899999999999999999999999997643

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=4.2e-05  Score=58.20  Aligned_cols=46  Identities=30%  Similarity=0.733  Sum_probs=36.1

Q ss_pred             CCccceecccccCCCceeeecccCCc-ccHHHHHHHHh-cCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLS-MKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk-~k~sCPICR~~l~  372 (378)
                      +.+|.||+|.-.+.    +|-.|||. .|.+|-.+.++ .+..||+||+++.
T Consensus         7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            47899999886542    33369998 89999766555 6899999999874

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.35  E-value=5.2e-05  Score=59.32  Aligned_cols=50  Identities=24%  Similarity=0.622  Sum_probs=25.3

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK  377 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~er  377 (378)
                      -..|++|.+.++++   ..+..|.|.||..||..-+.  ..||+|+.++-..+.|
T Consensus         7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred             hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence            46899999998865   23458999999999988554  4599999988666543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00026  Score=76.94  Aligned_cols=50  Identities=26%  Similarity=0.688  Sum_probs=39.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      .-..|+.|-..+++.    +++.|+|+||..||..-+.. ...||.|-+.+-+.+
T Consensus       642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            346899999777642    34479999999999999965 678999998876554

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.93  E-value=0.00033  Score=71.66  Aligned_cols=47  Identities=32%  Similarity=0.791  Sum_probs=37.4

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhc--CCCCCccCcccCCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVMAD  374 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~sCPICR~~l~~~  374 (378)
                      .-|-||-|.=+   .|.+- ||||..|..|+..|-..  .+.||.||.+|...
T Consensus       370 eLCKICaendK---dvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAENDK---DVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhccCC---Ccccc-cccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            46999987744   34444 89999999999999854  57899999998654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.75  E-value=0.00073  Score=69.30  Aligned_cols=53  Identities=25%  Similarity=0.672  Sum_probs=43.9

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ..++..|+||...+.++-..   ..|+|.||..||.+|+..+..||.|+..+....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~---~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT---TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             CcccccCccccccccCCCCC---CCCCCcccccccchhhccCcCCcccccccchhh
Confidence            35568999999999976332   279999999999999999999999998875543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.00088  Score=68.98  Aligned_cols=49  Identities=22%  Similarity=0.699  Sum_probs=41.1

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ..+..|.||...+..+   .++ ||||.||..||.+-+.....||.||.++..
T Consensus        82 ~sef~c~vc~~~l~~p---v~t-pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVT-PCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccc-cccccccHHHHHHHhccCCCCccccccccc
Confidence            4567899999888864   234 899999999999988888899999998863

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.001  Score=63.83  Aligned_cols=53  Identities=23%  Similarity=0.528  Sum_probs=43.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc--------CCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--------k~sCPICR~~l~~~~  375 (378)
                      ..+.-|.+|--.+..+|+++ | .|-|+||.+|+..|-..        ...||.|.++|++..
T Consensus        48 DY~pNC~LC~t~La~gdt~R-L-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTR-L-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCCCceeCCccccCccee-e-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            34567999999999998885 4 59999999999999854        235999999998764

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.57  E-value=0.0011  Score=50.63  Aligned_cols=42  Identities=24%  Similarity=0.623  Sum_probs=28.0

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc--CCCCCc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPI  366 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~sCPI  366 (378)
                      ....|+|.+..|+++  |... .|+|.|-++.|.+||+.  ...||+
T Consensus        10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            457899999999964  4444 79999999999999954  346998

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.38  E-value=0.0009  Score=66.90  Aligned_cols=48  Identities=23%  Similarity=0.596  Sum_probs=40.7

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      ..-..|.+|-.-|.+..++.   -|-|.||+.||.+.|...+.||+|...|
T Consensus        13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~i   60 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVI   60 (331)
T ss_pred             ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceec
Confidence            34578999998888765442   6999999999999999999999998765

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.0012  Score=65.31  Aligned_cols=90  Identities=23%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             cCCCCCCCHHHHHHhhhhcCCCCCCCC--HHHHHhhccceeeec----ccccCCCCccceecccccCCCceeeecccCCc
Q 017037          275 RLDIDNMTYEELLALGERIGSVSTGLS--EDLISRCLTESIYCS----ADQMQEEGNCVICLEEYKNMDDVGTLKSCGHD  348 (378)
Q Consensus       275 rlDiDnmsyEeLlaL~Erig~v~tGlS--ee~I~~ll~~~~~~~----~~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~  348 (378)
                      -+|+++++-.+|+++..+-...-.|-.  .+.+.+....-+...    ......+.-|.||++.-.+   ...| +|||.
T Consensus       246 l~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP~D---CvfL-eCGHm  321 (350)
T KOG4275|consen  246 LLDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAPRD---CVFL-ECGHM  321 (350)
T ss_pred             ccccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCCcc---eEEe-ecCcE
Confidence            356777888888877766443334433  223322211111100    1111225679999998664   4344 89997


Q ss_pred             -ccHHHHHHHHhcCCCCCccCcccC
Q 017037          349 -YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       349 -FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                       -|.+|-+.    -+.|||||+.|.
T Consensus       322 VtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  322 VTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             Eeehhhccc----cccCchHHHHHH
Confidence             68888644    458999998764

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0016  Score=59.61  Aligned_cols=31  Identities=39%  Similarity=0.813  Sum_probs=27.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccH
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHV  351 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~  351 (378)
                      ..+..+|.||||++..++++.+| ||..+||+
T Consensus       174 ~ddkGECvICLEdL~~GdtIARL-PCLCIYHK  204 (205)
T KOG0801|consen  174 KDDKGECVICLEDLEAGDTIARL-PCLCIYHK  204 (205)
T ss_pred             cccCCcEEEEhhhccCCCceecc-ceEEEeec
Confidence            34567899999999999999999 89999996

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.11  E-value=0.002  Score=65.94  Aligned_cols=47  Identities=26%  Similarity=0.591  Sum_probs=37.8

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCc
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKA  369 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~  369 (378)
                      +..|..|=+.+-..++-..-+||.|+||..|+...|.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            457999999987765444444999999999999999764  57999993

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.0051  Score=59.74  Aligned_cols=53  Identities=17%  Similarity=0.329  Sum_probs=47.1

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      -..|+||.+.+.+...+.+|-||||+|+.+|+.+.+..-..||+|-.++...+
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            35699999999998888888899999999999999998899999988876554

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.006  Score=61.91  Aligned_cols=50  Identities=28%  Similarity=0.550  Sum_probs=40.8

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ..++..|+||...-..    .+..||+|.-|..||.+-|...+.|=.||+.+..
T Consensus       419 ~sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             CcccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            3567889999765332    2445999999999999999999999999998763

>PHA02862 5L protein; Provisional

Probab=95.76  E-value=0.0082  Score=54.08  Aligned_cols=45  Identities=27%  Similarity=0.731  Sum_probs=34.0

Q ss_pred             CCccceecccccCCCceeeecccC-----CcccHHHHHHHHhc--CCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      ...|-||+++-++  .+   -||.     -.-|.+|+.+|+..  +..|++|+.+..
T Consensus         2 ~diCWIC~~~~~e--~~---~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCDE--RN---NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCCC--Cc---ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            3579999998543  23   2564     46899999999975  567999998754

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.0084  Score=58.97  Aligned_cols=52  Identities=25%  Similarity=0.494  Sum_probs=39.9

Q ss_pred             cccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc--CCCCCccCcccC
Q 017037          318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       318 ~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      .....+.+|++|-+.-..+   -+..+|+|+||.-||..-+.-  .-+||.|-.++.
T Consensus       234 s~~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  234 STGTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3445678899999886654   334479999999999887654  368999988776

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.64  E-value=0.005  Score=67.97  Aligned_cols=49  Identities=39%  Similarity=0.839  Sum_probs=40.0

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-C------CCCccCcc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-N------VCPICKAS  370 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~------sCPICR~~  370 (378)
                      ...+|.||++.+.....+-....|-|+||..||++|-+.. +      .||.|+..
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            4568999999999877776777899999999999998641 1      39999843

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.57  E-value=0.0078  Score=44.06  Aligned_cols=40  Identities=30%  Similarity=0.844  Sum_probs=27.2

Q ss_pred             cceecccccCCCceeeecccC-----CcccHHHHHHHHhc--CCCCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--k~sCPIC  367 (378)
                      |-||++.-...+.+ +. ||.     -..|..||.+|+..  +..|++|
T Consensus         1 CrIC~~~~~~~~~l-i~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-IS-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E--SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ec-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            78999997776533 23 664     36899999999975  4679998

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.49  E-value=0.013  Score=53.40  Aligned_cols=47  Identities=26%  Similarity=0.687  Sum_probs=34.3

Q ss_pred             CCCCccceecccccCCCceeeecccC--C---cccHHHHHHHHhcC--CCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCG--H---DYHVTCIKKWLSMK--NVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCg--H---~FH~~CI~kWLk~k--~sCPICR~~l~  372 (378)
                      ..+..|-||.++..  +...   ||.  .   ..|.+|+.+|+..+  ..|++|+++..
T Consensus         6 ~~~~~CRIC~~~~~--~~~~---PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYD--VVTN---YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCC--CccC---CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            45678999998854  2222   554  3   46999999999764  57999998753

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.48  E-value=0.0099  Score=68.73  Aligned_cols=50  Identities=30%  Similarity=0.729  Sum_probs=37.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----------CCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----------NVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----------~sCPICR~~l~  372 (378)
                      .++.|.||..+--......+| .|+|+||..|...-|...          -+||+|+.+|-
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL-~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQL-DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cCceEEEEehhhhCCCcceec-CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            467799998876555555666 799999999997766432          25999998763

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.46  E-value=0.0057  Score=57.78  Aligned_cols=43  Identities=23%  Similarity=0.643  Sum_probs=36.4

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcc
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS  370 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~  370 (378)
                      ..|.||-++|+.+    +...|||.||..|...-.+....|-+|-+.
T Consensus       197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             eeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            4699999999975    344799999999998888878899999764

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.42  E-value=0.0082  Score=53.36  Aligned_cols=36  Identities=28%  Similarity=0.613  Sum_probs=29.1

Q ss_pred             CCccceecccccCCCceeeecccC------CcccHHHHHHHHh
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCG------HDYHVTCIKKWLS  359 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCg------H~FH~~CI~kWLk  359 (378)
                      ..+|.||++.+.+.+-|..+ +|+      |.||.+|+++|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~v-t~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYV-TDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEE-ecCCeehHHHHHHHHHHHHHHh
Confidence            56899999999984456556 576      8999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA03096 p28-like protein; Provisional

Probab=95.27  E-value=0.0092  Score=59.06  Aligned_cols=45  Identities=33%  Similarity=0.640  Sum_probs=33.6

Q ss_pred             CccceecccccCCC----ceeeecccCCcccHHHHHHHHhc---CCCCCccC
Q 017037          324 GNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWLSM---KNVCPICK  368 (378)
Q Consensus       324 ~~C~ICLeef~~ge----~v~~LlpCgH~FH~~CI~kWLk~---k~sCPICR  368 (378)
                      ..|.||++......    .-+.|..|.|.||..||..|-..   +..||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            67999999876532    34567789999999999999865   23444444

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.013  Score=59.47  Aligned_cols=44  Identities=30%  Similarity=0.671  Sum_probs=30.6

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ....|.||+++.++   ..-+ ||||+-|  |+.--.. ..+||+||+.|.
T Consensus       304 ~p~lcVVcl~e~~~---~~fv-pcGh~cc--ct~cs~~-l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFV-PCGHVCC--CTLCSKH-LPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeee-cCCcEEE--chHHHhh-CCCCchhHHHHH
Confidence            45679999999886   3334 8999855  5544322 345999998763

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=0.013  Score=60.51  Aligned_cols=46  Identities=28%  Similarity=0.582  Sum_probs=35.7

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhc--------CCCCCccCc
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKA  369 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--------k~sCPICR~  369 (378)
                      .-.|.||.++......+..+ ||+|+||+.|++.++..        .-.||-|+.
T Consensus       184 lf~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             cccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            45799999998765666555 99999999999999953        224877654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.89  E-value=0.026  Score=54.72  Aligned_cols=53  Identities=17%  Similarity=0.444  Sum_probs=42.5

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      .....|+|+..+|........+.+|||+|...||++- +....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence            3456799999999766677777799999999999996 3346799998887643

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.72  E-value=0.015  Score=61.65  Aligned_cols=51  Identities=25%  Similarity=0.687  Sum_probs=37.9

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-----CCCCCccCcccCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-----KNVCPICKASVMAD  374 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-----k~sCPICR~~l~~~  374 (378)
                      ...+..|.+|-+.-++.  + .. .|.|.||..||+.++..     +-+||+|-..+..+
T Consensus       533 nk~~~~C~lc~d~aed~--i-~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDY--I-ES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccCceeecccCChhhhh--H-hh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            34566899999886542  2 23 79999999999999843     45799998776544

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.40  E-value=0.027  Score=41.85  Aligned_cols=44  Identities=30%  Similarity=0.635  Sum_probs=23.2

Q ss_pred             cceecccccCCC-ceeeecccCCcccHHHHHHHHh-cCCCCCccCcc
Q 017037          326 CVICLEEYKNMD-DVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKAS  370 (378)
Q Consensus       326 C~ICLeef~~ge-~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~  370 (378)
                      |++|.+++...+ .+.-. +|+..++..|...-+. ....||-||.+
T Consensus         1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            789999995544 44444 6899999999988876 47889999986

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.027  Score=58.07  Aligned_cols=33  Identities=36%  Similarity=0.853  Sum_probs=26.5

Q ss_pred             eeecccCCcccHHHHHHHHhc--CCCCCccCcccC
Q 017037          340 GTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       340 ~~LlpCgH~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      .+.+.|+|.|...||.+||.+  +..||.|+.+..
T Consensus        22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen   22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             EeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            344489999999999999963  356999987654

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.016  Score=57.59  Aligned_cols=44  Identities=23%  Similarity=0.545  Sum_probs=37.6

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      ..|-||...|..+    +...|+|.||..|..+=++....|.+|-+..
T Consensus       242 f~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccc
Confidence            4599999999975    3347999999999999888889999998765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.15  E-value=0.021  Score=46.78  Aligned_cols=34  Identities=32%  Similarity=0.686  Sum_probs=26.6

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHH
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIK  355 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~  355 (378)
                      ..++..|.||-..+..+ .. ...||+|+||..|++
T Consensus        75 i~~~~~C~vC~k~l~~~-~f-~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGNS-VF-VVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCCc-eE-EEeCCCeEEeccccc
Confidence            34567899999998873 34 444999999999985

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.08  E-value=0.0035  Score=64.10  Aligned_cols=51  Identities=33%  Similarity=0.695  Sum_probs=43.8

Q ss_pred             CCCccceecccccCC-CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~g-e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      -...|+||.+.++.. +++-.+ -|+|.+|..||.+||..+..||.|+.++.-
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            356899999999875 566666 699999999999999999999999998854

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.97  E-value=0.052  Score=55.21  Aligned_cols=50  Identities=30%  Similarity=0.662  Sum_probs=37.1

Q ss_pred             cccCCCCccceecccccCCCceeeecccCCcccHHHHHHH--HhcCCCCCccCccc
Q 017037          318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW--LSMKNVCPICKASV  371 (378)
Q Consensus       318 ~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW--Lk~k~sCPICR~~l  371 (378)
                      +..++...|.||.+.+.-   + .++||+|..|-.|....  |-.++.||+||.+-
T Consensus        56 dtDEen~~C~ICA~~~TY---s-~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          56 DTDEENMNCQICAGSTTY---S-ARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccccceeEEecCCceE---E-EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            344566779999987652   3 34499999999998654  34578999999863

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.43  E-value=0.039  Score=54.49  Aligned_cols=46  Identities=30%  Similarity=0.594  Sum_probs=39.5

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCc
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA  369 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~  369 (378)
                      .-|+||.+.+-........++|+|.-|..|+.......-.||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3499999998887765555699999999999999888899999988

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.067  Score=53.91  Aligned_cols=47  Identities=21%  Similarity=0.458  Sum_probs=37.2

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      +...|+||+....++ ++..  .-|-+||..||-+.+...+.||+=-.++
T Consensus       299 ~~~~CpvClk~r~Np-tvl~--vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNP-TVLE--VSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCC-ceEE--ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            456799999998875 3322  3699999999999999999999865443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.98  E-value=0.067  Score=54.28  Aligned_cols=54  Identities=22%  Similarity=0.473  Sum_probs=38.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~~~  375 (378)
                      +++.|++|++++...++-..-.+||-..|.-|...--+ .+..||-||.....++
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            34559999999988775444348998888888655433 2678999998765544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.86  E-value=0.062  Score=53.72  Aligned_cols=47  Identities=30%  Similarity=0.566  Sum_probs=35.6

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccC-cccCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICK-ASVMA  373 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR-~~l~~  373 (378)
                      ..|+.|-.-+...-+  . +.|+|.||.+||..-|.. ...||.|. +.++-
T Consensus       275 LkCplc~~Llrnp~k--T-~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll  323 (427)
T COG5222         275 LKCPLCHCLLRNPMK--T-PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL  323 (427)
T ss_pred             ccCcchhhhhhCccc--C-ccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence            789999888776422  2 469999999999987765 57899994 44443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=0.072  Score=59.25  Aligned_cols=44  Identities=27%  Similarity=0.710  Sum_probs=33.3

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      ....|.+|--.++.+ .| -- -|+|.||..|+.   .....||.|+.++
T Consensus       839 q~skCs~C~~~LdlP-~V-hF-~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLP-FV-HF-LCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeeeecccCCccccc-ee-ee-ecccHHHHHhhc---cCcccCCccchhh
Confidence            446899998888765 22 22 599999999998   3456799999854

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.35  E-value=0.16  Score=51.93  Aligned_cols=29  Identities=31%  Similarity=0.874  Sum_probs=22.8

Q ss_pred             cCCcccHHHHHHHHhc-------------CCCCCccCcccCC
Q 017037          345 CGHDYHVTCIKKWLSM-------------KNVCPICKASVMA  373 (378)
Q Consensus       345 CgH~FH~~CI~kWLk~-------------k~sCPICR~~l~~  373 (378)
                      |.-..|.+|+-+|+..             +..||+||+.+..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            6677899999999943             2359999998754

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.80  E-value=0.073  Score=53.40  Aligned_cols=43  Identities=23%  Similarity=0.621  Sum_probs=29.7

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV  371 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l  371 (378)
                      -.|.-|--.+..   -++|.||+|+||.+|...  ..-+.||.|-..|
T Consensus        91 HfCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFPIAI---YGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCccee---eecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            346666544442   346679999999999754  3357899997655

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.68  E-value=0.093  Score=37.80  Aligned_cols=41  Identities=27%  Similarity=0.659  Sum_probs=23.0

Q ss_pred             cceecccccCCCceeeecccCCcccHHHHHHHHhcCC--CCCcc
Q 017037          326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--VCPIC  367 (378)
Q Consensus       326 C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~--sCPIC  367 (378)
                      |.+|-+....|...... .|.=.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            66777777666433322 4888899999999998754  69988

; PDB: 3NW0_A 2CT0_A.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.34  E-value=0.059  Score=58.40  Aligned_cols=44  Identities=25%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCc
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA  369 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~  369 (378)
                      ...|.||+..|....-.-+.+.|||..|..|+..-  .+.+|| |+.
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence            35799999888776544444579999999999874  467888 654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.13  E-value=0.13  Score=39.23  Aligned_cols=47  Identities=32%  Similarity=0.524  Sum_probs=33.2

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ...|..|...-    .++.++||+|+.+..|..-+  +-+-||+|-+.+...+
T Consensus         7 ~~~~~~~~~~~----~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVG----TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccc----cccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence            34566665542    33456699999999997653  4578999998886554

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.10  E-value=0.088  Score=57.85  Aligned_cols=45  Identities=33%  Similarity=0.828  Sum_probs=34.4

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCcccCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMA  373 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~~l~~  373 (378)
                      ..|.||++    .+.+.. .+|+|.||.+|+.+-+...  ..||+||..+..
T Consensus       455 ~~c~ic~~----~~~~~i-t~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFI-TRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc----ccccee-ecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            78999999    223333 3799999999999988653  359999987643

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.92  E-value=0.14  Score=49.63  Aligned_cols=52  Identities=29%  Similarity=0.657  Sum_probs=36.8

Q ss_pred             CCccceecccccCCCceeeecccC-----CcccHHHHHHHHhc--CCCCCccCcccCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPICKASVMAD  374 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--k~sCPICR~~l~~~  374 (378)
                      +..|-||.++.........+.||.     ...|..|+.+|+..  +..|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            578999999876543211223664     55799999999985  56799998865443

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=90.12  E-value=0.088  Score=60.82  Aligned_cols=45  Identities=38%  Similarity=0.816  Sum_probs=37.2

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcc
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS  370 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~  370 (378)
                      -..|.||++.....  -++. .|+|.+|..|+..|+..+..||+|+..
T Consensus      1153 ~~~c~ic~dil~~~--~~I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIA-GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             ccchHHHHHHHHhc--CCee-eechhHhhhHHHHHHHHhccCcchhhh
Confidence            34799999998843  1233 599999999999999999999999853

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=0.21  Score=46.74  Aligned_cols=51  Identities=27%  Similarity=0.699  Sum_probs=34.6

Q ss_pred             CCccceecccccCC---CceeeecccCCcccHHHHHHHHhc----C-------CCCCccCcccCC
Q 017037          323 EGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSM----K-------NVCPICKASVMA  373 (378)
Q Consensus       323 d~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~----k-------~sCPICR~~l~~  373 (378)
                      ...|.||..---+|   +.+.--..|+--||.-|+..||+.    .       ..||.|..++.-
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            45688887543332   222223379999999999999953    1       249999988754

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=89.77  E-value=0.19  Score=50.18  Aligned_cols=44  Identities=23%  Similarity=0.628  Sum_probs=35.1

Q ss_pred             CCCCccceecccccCCCceeeeccc--CCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSC--GHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpC--gH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .+-..|+||.+.+..+    .. .|  ||.-|..|-.   +.++.||.||.++.
T Consensus        46 ~~lleCPvC~~~l~~P----i~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IF-QCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCccc----ce-ecCCCcEehhhhhh---hhcccCCccccccc
Confidence            3457899999999875    33 56  7999999975   45788999999886

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.52  E-value=0.19  Score=49.39  Aligned_cols=50  Identities=24%  Similarity=0.631  Sum_probs=34.9

Q ss_pred             CCCccceecccccCCCceeeecccC-----CcccHHHHHHHHhcCC--------CCCccCccc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMKN--------VCPICKASV  371 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k~--------sCPICR~~l  371 (378)
                      .+..|=||+..=++.-.--..-||.     |..|..||..|+..|.        +||-|+++-
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            4456889998755533222333664     7899999999996543        499999864

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=88.12  E-value=0.14  Score=56.12  Aligned_cols=53  Identities=32%  Similarity=0.644  Sum_probs=41.5

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC---CCCCccCcccCCCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKASVMADSEK  377 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k---~sCPICR~~l~~~~er  377 (378)
                      ....+|+||+.-+.++    .++.|-|.|+..|+..-|..+   ..||+|+..+...+.+
T Consensus        19 ~k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~   74 (684)
T KOG4362|consen   19 QKILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR   74 (684)
T ss_pred             hhhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence            3467899999999976    455899999999998877654   4699999877554443

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.75  E-value=0.26  Score=46.80  Aligned_cols=40  Identities=30%  Similarity=0.624  Sum_probs=28.2

Q ss_pred             ccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .|-+|-+.=.   .| .++||.|. +|..|-..    ...||+|+....
T Consensus       160 ~Cr~C~~~~~---~V-lllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  160 SCRKCGEREA---TV-LLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             cceecCcCCc---eE-EeecccceEeccccccc----CccCCCCcChhh
Confidence            3888866522   34 45599987 89999654    456999998654

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.34  E-value=0.69  Score=35.25  Aligned_cols=44  Identities=30%  Similarity=0.692  Sum_probs=35.9

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCc--cCcc
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPI--CKAS  370 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPI--CR~~  370 (378)
                      ...|.+|-+.|+.++.+.+.+.|+=.||+.|..+    ...|-+  |...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            4679999999998889999999999999999755    556655  5543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=87.10  E-value=0.33  Score=47.34  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=35.2

Q ss_pred             CCCccceecccc-cCCC-ceeeecccCCcccHHHHHHHHhc-CCCCC--ccCc
Q 017037          322 EEGNCVICLEEY-KNMD-DVGTLKSCGHDYHVTCIKKWLSM-KNVCP--ICKA  369 (378)
Q Consensus       322 ed~~C~ICLeef-~~ge-~v~~LlpCgH~FH~~CI~kWLk~-k~sCP--ICR~  369 (378)
                      .+..|+||..+. -.++ ++.+-+.|-|..|.+|++.-+.. ...||  -|-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            356899999774 4444 33334349999999999999987 57899  6643

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=86.35  E-value=0.4  Score=53.29  Aligned_cols=50  Identities=14%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             CCccceecccccCCCc-eeee--cccCCcccHHHHHHHHhc------CCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDD-VGTL--KSCGHDYHVTCIKKWLSM------KNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~-v~~L--lpCgH~FH~~CI~kWLk~------k~sCPICR~~l~  372 (378)
                      ...|.||.-++..++. ...+  -.|.|.||..||..|+.+      +-.|++|...|.
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            4456666666665332 2222  249999999999999954      235899987653

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.11  E-value=0.31  Score=54.63  Aligned_cols=37  Identities=19%  Similarity=0.449  Sum_probs=28.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHH
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL  358 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWL  358 (378)
                      ...++.|.||...+-..  .-.+.||||.||++||.+-.
T Consensus       814 ~ep~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ecCccchHHhcchhhcC--cceeeeccchHHHHHHHHHH
Confidence            45678999999888764  33344899999999997754

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.82  E-value=0.43  Score=47.75  Aligned_cols=29  Identities=17%  Similarity=0.551  Sum_probs=23.5

Q ss_pred             cCCcccHHHHHHHHh-------------cCCCCCccCcccCC
Q 017037          345 CGHDYHVTCIKKWLS-------------MKNVCPICKASVMA  373 (378)
Q Consensus       345 CgH~FH~~CI~kWLk-------------~k~sCPICR~~l~~  373 (378)
                      |....|.+|+.+|+.             .+.+||+||+.+..
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            778899999999983             34579999998754

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.56  E-value=0.36  Score=36.00  Aligned_cols=31  Identities=29%  Similarity=0.713  Sum_probs=22.5

Q ss_pred             ccC-CcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          344 SCG-HDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       344 pCg-H~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      .|. |..|..|+...|.+...||||+.+++..
T Consensus        17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            575 9999999999999999999999988753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=84.32  E-value=1.1  Score=41.22  Aligned_cols=35  Identities=31%  Similarity=0.656  Sum_probs=21.9

Q ss_pred             CCCccceecccccCCCceeeec-----------ccCC-cccHHHHHHHHh
Q 017037          322 EEGNCVICLEEYKNMDDVGTLK-----------SCGH-DYHVTCIKKWLS  359 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~Ll-----------pCgH-~FH~~CI~kWLk  359 (378)
                      ++..|+||||--.+.  | .|+           =|.- .-|..||++.-+
T Consensus         1 ed~~CpICme~PHNA--V-LLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNA--V-LLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCce--E-EEEeccccCCccccccCCccchhHHHHHHHH
Confidence            357899999986653  1 111           0332 247889998763

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.60  E-value=0.68  Score=51.41  Aligned_cols=25  Identities=36%  Similarity=0.994  Sum_probs=22.6

Q ss_pred             ecccCCcccHHHHHHHHhcCCCCCc
Q 017037          342 LKSCGHDYHVTCIKKWLSMKNVCPI  366 (378)
Q Consensus       342 LlpCgH~FH~~CI~kWLk~k~sCPI  366 (378)
                      +..|+|+.|.+|...|+.....||.
T Consensus      1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hccccccccHHHHHHHHhcCCcCCC
Confidence            4479999999999999999999985

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.39  E-value=0.49  Score=48.73  Aligned_cols=39  Identities=28%  Similarity=0.677  Sum_probs=29.3

Q ss_pred             CCCccceecccccCC-CceeeecccCCcccHHHHHHHHhcC
Q 017037          322 EEGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSMK  361 (378)
Q Consensus       322 ed~~C~ICLeef~~g-e~v~~LlpCgH~FH~~CI~kWLk~k  361 (378)
                      ....|.||..+.... +... ...|+|.||.+|+++.+..+
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev~  184 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEVK  184 (384)
T ss_pred             ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhhh
Confidence            457899999555544 3444 44799999999999998754

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=83.19  E-value=0.98  Score=40.45  Aligned_cols=54  Identities=26%  Similarity=0.498  Sum_probs=37.0

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPICR~~l~~~~  375 (378)
                      .-.+|-||.|.-.+..=+.----||-..|.-|-....+   ....||+||..+...+
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            45689999998765321111113898899887765544   3678999999987655

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=81.10  E-value=1.1  Score=50.21  Aligned_cols=50  Identities=24%  Similarity=0.577  Sum_probs=37.6

Q ss_pred             CCCCccceecccccCCCceeeecccCC-----cccHHHHHHHHhc--CCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGH-----DYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH-----~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      .++..|-||..+=..++.+--  ||+.     ..|.+|+..|+.-  +..|-+|+.++.
T Consensus        10 ~d~~~CRICr~e~~~d~pLfh--PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~   66 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFH--PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK   66 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcc--cccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence            455789999988666655532  5653     4899999999975  467999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		7e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-06
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		4e-05
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		3e-04
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		4e-04

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372
           C +CLE++K  D++G +  C H +H  C+ KWL ++ VCP+C   V+
Sbjct: 18  CAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372
           M +   C +CL E ++ ++   L  CGH +H  C+  WL   + CP+C+ +V+
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
           +   E+  CV+C+ ++++   +  L  C H++H  C+ KWL     CPIC+A
Sbjct: 18  NHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
           C ICL   +  +DV  L  C H +H  C+ +WL     CPIC+  + A    E
Sbjct: 17  CTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 315 CSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 368
           C+  ++Q    C+ C  E K  D V     C H +H  C+  W+   N CP+C+
Sbjct: 18  CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-17
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	6e-17
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	9e-16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	3e-14
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	6e-14
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	6e-14
2ect_A	78	Ring finger protein 126; metal binding protein, st	6e-14
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	6e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	6e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	6e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-07
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	7e-07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	4e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	7e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	7e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	2e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	6e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	8e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	2e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	4e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	7e-04

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 75.2 bits (185), Expect = 2e-17
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK 377
           ++     C +CLE++K  D++G    C H +H  C+ KWL ++ VCP+C   V+  ++ 
Sbjct: 11  ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 73.9 bits (182), Expect = 6e-17
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 301 SEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM 360
           S     + L    +   +   E+  CV+C+ ++++   +  L  C H++H  C+ KWL  
Sbjct: 2   SSGSSGQ-LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA 59

Query: 361 KNVCPICKASVMADS 375
              CPIC+A     S
Sbjct: 60  NRTCPICRADSGPSS 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
            E  C ICL   +  +DV  L  C H +H  C+ +WL     CPIC+  + A    E
Sbjct: 13  TEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
              C ICLE+      V  +  CGH  H TC ++ L     CP+C    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 320 MQEEG-NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           M      C ICLE+     +      C H +   CI +W+     CP+CK  V
Sbjct: 1   MATVAERCPICLED---PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           M +   C +CL E ++ ++   L  CGH +H  C+  WL   + CP+C+ +V
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           +E  C IC  EY   D    L  C H +H  C+  WL     CP+C+   
Sbjct: 39  QEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
           + + +     C +C E+Y   + V  L  C H +H +CI  WL   + CP+C+ S+   +
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66

Query: 376 EKE 378
              
Sbjct: 67  TAT 69

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 65.1 bits (159), Expect = 6e-14
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
              Q+ +E  C IC++   ++     L  C H +   CI KW      CPIC+  +   +
Sbjct: 8   RVKQLTDEEECCICMDGRADL----IL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62

Query: 376 E 376
           E
Sbjct: 63  E 63

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 315 CSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
           C+  ++Q    C+ C  E K  D V     C H +H  C+  W+   N CP+C+ 
Sbjct: 18  CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 325 NCVICLEEYKNMDDVG---TLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           +C IC++ Y  +   G       CGH +   C++  L   N CP C+  +
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 322 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
              +C IC++ Y  +     +     CGH +   C++  L   N CP C+  +    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 325 NCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
           +C IC++ Y        +     CGH +   C++  L   N CP C+  +    
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD 374
           S + + E   C IC+E+   + D      C      +CI++WL+  +  CP C+A +   
Sbjct: 15  SVESIAEVFRCFICMEK---LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71

Query: 375 S 375
            
Sbjct: 72  E 72

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
            ++     C IC      + D  T+  C H +  +CI +     N CP C   V
Sbjct: 10  SELTPYILCSICKGY---LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
            ++     CV+C   +    D  T+  C H +  TCI ++L     CPIC   V
Sbjct: 10  TELNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 52.5 bits (125), Expect = 6e-09
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 25/94 (26%)

Query: 295 SVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDD--------------VG 340
           S S+G  E +I +   E       ++  E +C+IC+E+                    VG
Sbjct: 3   SGSSGEPEQVIRKYTEEL------KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 341 TLKSCGHDYHVTCIKKWLSMKN-----VCPICKA 369
            L  C H +H+ C+       N      CP CK 
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           C IC + ++  + V T   C H +  +C  +       C IC    
Sbjct: 18  CFICRQAFQ--NPVVT--KCRHYFCESCALEHFRATPRCYICDQPT 59

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 56.3 bits (135), Expect = 6e-09
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 310 TESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICK 368
            E      +       C IC E  K++     ++ CGH    +C+  W  S    CP C+
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCR 374

Query: 369 ASV 371
             +
Sbjct: 375 CEI 377

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 52.5 bits (125), Expect = 8e-09
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 317 ADQMQEEGNCVICLEEYKNMDDVG---TLKSCGHDYHVTCIKKWLSMKNVCPICK 368
                   +C IC++ Y  +   G       CGH +   C++  L   N CP C+
Sbjct: 1   GAMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 304 LISRCLTESIYCSADQMQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSM 360
              + +    Y          +C IC++ Y  +     +     CGH +   C++  L  
Sbjct: 53  TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112

Query: 361 KNVCPICKASV 371
            N CP C+  +
Sbjct: 113 ANTCPTCRKKI 123

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
               + +   C IC E +     +  +  C H+Y   CI+K+LS K  CP C  +V
Sbjct: 15  VMKTIDDLLRCGICFEYFN--IAM-IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 311 ESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 370
           E +    D ++ E  C+IC E +          +C H +   CI +W+  K  CPIC+  
Sbjct: 52  EVLSHMNDVLENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKD 107

Query: 371 V 371
           +
Sbjct: 108 I 108

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374
           +         C ICL+       V     C H +   C+K    +   C +C+  +  D
Sbjct: 8   NTAPSLTVPECAICLQTCV--HPVSL--PCKHVFCYLCVKGASWLGKRCALCRQEIPED 62

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 315 CSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 367
           C    M     C        + +       C H +H  CI +WL  + VCP+ 
Sbjct: 43  CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL--SMKNVCPICKA 369
           C IC      +    + ++CG   H+ C+ K+   + +  CP C  
Sbjct: 18  CNICHSL---LIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
            +++E   C++C EE  N     T   CGH   V C      +++ CP+C++ V
Sbjct: 13  RKLKEAMLCMVCCEEEINS----TFCPCGH--TVCCESCAAQLQS-CPVCRSRV 59

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPICKAS 370
           S D  ++   C +C+E  +  D      +CG+     C  +  + +N  CP C+  
Sbjct: 4   SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           + D++++   C  C    +   +   L  C H +   C+   +     CP+C    
Sbjct: 15  ALDRLEKLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIGTG--CPVCYTPA 65

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 313 IYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 367
             C    M     C        + +       C H +H  CI +WL  + VCP+ 
Sbjct: 52  AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 317 ADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASV 371
             +++E   C+ C E         T   C H+    C+ +   +    CP C+  +
Sbjct: 46  LSKVEETFQCICCQELVF---RPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDL 97

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
            ++QEE  C IC++    +        CGH   VTC +   ++   CP+C   +
Sbjct: 20  RRLQEEKLCKICMDRNIAI----VFVPCGH--LVTCKQCAEAVDK-CPMCYTVI 66

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL--SMKNVCPICKAS 370
             D + +E  C+IC +      D   +  CG+ Y   CI+  L  S ++ CP C  +
Sbjct: 6   EDDPIPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMADS 375
             ++++  C  C           T   CGH +  +C+   LS  +  C  C+ S++ D 
Sbjct: 10  KTVEDKYKCEKCHLVLC--SPKQT--ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 15/65 (23%)

Query: 322 EEGNCVICLEEY----KNMDDVGTLKSCGHDYHVTCIKKWL-----------SMKNVCPI 366
           EE  C IC        +          C    H  C+++W                 CP 
Sbjct: 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 367 CKASV 371
           CKA +
Sbjct: 367 CKAKL 371

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL--SMKNVCPICKASV 371
             D + +E  C+IC +     D V  +  CG+ Y   CI+  L  S ++ CP C  + 
Sbjct: 8   EDDPIPDELLCLICKDIMT--DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASV 371
           + D ++E   C IC+E +        L  CGH     C++K L+       CP C    
Sbjct: 8   NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPIC 367
           C +CL EY  ++ + T+  C   +   C+K+++ +         I 
Sbjct: 8   CKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAIS 52

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYH-VTCIKKWLSMKNVCPICKASV 371
           D       C +C +  ++ + +      GH      C ++       CPICK  +
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNII--HGRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 316 SADQMQEEGNCVICLEEYKN-MDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASV 371
           S   +  E  C ICL+  KN M    T K C H +   CI   L   N  CP C+  +
Sbjct: 47  SPRSLHSELMCPICLDMLKNTM----TTKECLHRFCADCIITALRSGNKECPTCRKKL 100

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYH-VTCIKKWLSMKNVCPICKASV 371
           S+  +     CVIC    KN          GH     TC KK       CP+C+  +
Sbjct: 1   SSLPLNAIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 322 EEGNCVICL-EEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPICKASV 371
           ++  C  C   +Y+N      +  CGH    +C+          CP C   +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASV 371
            ++++   CV C E       V T   C H+    C+++   +    CP C+  +
Sbjct: 73  KKLEQSFMCVCCQELVY--QPVTT--ECFHNVCKDCLQRSFKAQVFSCPACRHDL 123

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
              +   +CV+C     N      L  C H     C       +  CP+C+  V
Sbjct: 10  PSEENSKDCVVCQNGTVNW----VLLPCRH--TCLCDGCVKYFQQ-CPMCRQFV 56

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV---CPICKASV 371
           MQ+   C ICLE  K  + V T   C H +   C+ K L+ K     CP+CK  +
Sbjct: 18  MQKILECPICLELIK--EPVST--KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WLSMKNV--CPICKASV 371
             +++QEE  C ICL+  +    V T+  CGH++ + CI +   +      CP+CK SV
Sbjct: 13  FVNKLQEEVICPICLDILQ--KPV-TI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPICKASV 371
            A     E  C IC+E     + V TL  C H     C +  +   ++ CP C+  V
Sbjct: 8   DAIPSLSECQCGICMEILV--EPV-TL-PCNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WLSMKNV--CPIC 367
           + + +Q E +C +CLE  K  + V  +  CGH++   CI + W  ++    CP+C
Sbjct: 8   ALENLQVEASCSVCLEYLK--EPV-II-ECGHNFCKACITRWWEDLERDFPCPVC 58

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 319 QMQEEGNCVICLEEYKNMDDV-----GTLKSCGHDYHVTCIKKWLSMK--NVCPICKA 369
           + ++   C IC EE  N         G L++     H +C+  WL++     C IC  
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTGELENV----HRSCLSTWLTISRNTACQICGV 55

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WLSMKNV-----CPICKAS 370
           ++EE  C ICLE  K  + V +   C H +   CI   + S +N      CP+C+  
Sbjct: 16  IKEEVTCPICLELLK--EPV-SA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 307 RCLTESIYCSADQMQEE-GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNV 363
           R + E      +   +    C IC   +  +    + ++CG   H+ C+ K+     +  
Sbjct: 163 RAILEMEQYIRETYPDAVKICNIC---HSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR 219

Query: 364 CPICKA 369
           CP C  
Sbjct: 220 CPHCND 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.64
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.51
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.46
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.45
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.45
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.42
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.41
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.39
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.38
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.35
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.32
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.3
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.29
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.26
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.25
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.25
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.24
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.24
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.21
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.15
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.15
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.12
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.12
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.09
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.09
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.02
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.02
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.01
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.0
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.98
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.97
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.93
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.92
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.88
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.88
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.83
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.83
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.82
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.8
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.76
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.76
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.76
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.7
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.65
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.6
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.59
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.56
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.47
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.46
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.43
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.4
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.37
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.3
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.28
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.21
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.2
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.89
3nw0_A	238	Non-structural maintenance of chromosomes element	97.45
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.85
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.74
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.22
1we9_A	64	PHD finger family protein; structural genomics, PH	88.86
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	87.03
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	86.62
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	86.03
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	82.58
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	81.32
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	81.26
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	81.05

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=127.42  Aligned_cols=80  Identities=24%  Similarity=0.472  Sum_probs=66.4

Q ss_pred             CCCCCCCCHHHHHhhccceeeecccccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          294 GSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       294 g~v~tGlSee~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      +....|++++.|..++...+.........+..|+||+++|..++.+..+ +|+|.||..||.+||+.+.+||+||+.+.+
T Consensus        11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3456889999999988766543334455677899999999998888777 799999999999999999999999999865


Q ss_pred             C
Q 017037          374 D  374 (378)
Q Consensus       374 ~  374 (378)
                      .
T Consensus        90 ~   90 (91)
T 2l0b_A           90 P   90 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=8.5e-15  Score=113.10  Aligned_cols=56  Identities=32%  Similarity=0.885  Sum_probs=49.4

Q ss_pred             ccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ...++..|+||+++|..++.+..+ +|+|.||..||.+||+.+..||+||+.+.+..
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence            345667899999999998888777 79999999999999999999999999987653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.47  E-value=1.9e-14  Score=104.35  Aligned_cols=52  Identities=31%  Similarity=0.952  Sum_probs=46.4

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .++..|+||+++|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3567899999999998888777459999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.1e-14  Score=108.07  Aligned_cols=55  Identities=35%  Similarity=0.958  Sum_probs=48.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            34567899999999998888777 79999999999999999999999999986543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.45  E-value=7.3e-14  Score=105.85  Aligned_cols=55  Identities=35%  Similarity=0.822  Sum_probs=47.8

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            34567899999999887777777 89999999999999999999999999986543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=5.4e-14  Score=109.00  Aligned_cols=56  Identities=30%  Similarity=0.794  Sum_probs=48.9

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE  376 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e  376 (378)
                      ...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+...+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            34567899999999988777777 899999999999999999999999999876543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.42  E-value=9.8e-14  Score=100.36  Aligned_cols=51  Identities=31%  Similarity=0.677  Sum_probs=44.3

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .+..|+||++.|..++...++++|+|.||..||.+|++.+..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            467899999999876655555689999999999999999999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.41  E-value=2.7e-13  Score=112.18  Aligned_cols=68  Identities=28%  Similarity=0.596  Sum_probs=49.2

Q ss_pred             CHHHHHhhccceeeecccccCCCCccceecccccCCC--------------ceeeecccCCcccHHHHHHHHh-----cC
Q 017037          301 SEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMD--------------DVGTLKSCGHDYHVTCIKKWLS-----MK  361 (378)
Q Consensus       301 See~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~ge--------------~v~~LlpCgH~FH~~CI~kWLk-----~k  361 (378)
                      .++.+.++.....      ...+..|+|||+.|..+.              .+.++++|+|.||..||.+||.     .+
T Consensus         9 p~~~i~~~~~~~~------~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~   82 (114)
T 1v87_A            9 PEQVIRKYTEELK------VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS   82 (114)
T ss_dssp             HHHHHHHHEEECS------SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSC
T ss_pred             hHHHHHHHHHhcc------CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCC
Confidence            3455655443221      224568999999997653              3445669999999999999994     46


Q ss_pred             CCCCccCcccCCC
Q 017037          362 NVCPICKASVMAD  374 (378)
Q Consensus       362 ~sCPICR~~l~~~  374 (378)
                      .+||+||+.+...
T Consensus        83 ~~CP~CR~~~~~~   95 (114)
T 1v87_A           83 LQCPSCKTIYGEK   95 (114)
T ss_dssp             CBCTTTCCBSSSC
T ss_pred             CcCCCCCCccCCC
Confidence            7899999987543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=9.4e-14  Score=109.74  Aligned_cols=53  Identities=28%  Similarity=0.716  Sum_probs=42.6

Q ss_pred             CCCccceeccccc-----------CCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          322 EEGNCVICLEEYK-----------NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       322 ed~~C~ICLeef~-----------~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      ++..|+||+++|.           .++.++++++|+|.||..||.+||+.+++||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            4556777777764           4455777767999999999999999999999999987543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.38  E-value=1.9e-13  Score=103.50  Aligned_cols=57  Identities=23%  Similarity=0.612  Sum_probs=46.8

Q ss_pred             cCCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017037          320 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE  376 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e  376 (378)
                      ..++..|+||++.+.+.   ....++++|+|.||..||.+|++.+..||+||+.+...+.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            34567899999999763   2333455899999999999999999999999999976654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=3.2e-13  Score=101.35  Aligned_cols=54  Identities=24%  Similarity=0.661  Sum_probs=44.2

Q ss_pred             cCCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          320 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ..+...|+||++.|.+.   ....++++|+|.||..||.+|++.+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34567899999999864   2233445899999999999999999999999998853

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.32  E-value=9.5e-13  Score=110.04  Aligned_cols=53  Identities=26%  Similarity=0.655  Sum_probs=43.8

Q ss_pred             cCCCCccceecccccCC--------------CceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNM--------------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~g--------------e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ..++..|+||++.|...              +.+.++++|+|.||..||.+||+.+.+||+||+++.
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            34678899999999864              123445589999999999999999999999999853

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.30  E-value=9e-13  Score=97.50  Aligned_cols=54  Identities=24%  Similarity=0.669  Sum_probs=44.3

Q ss_pred             CCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ++..|+||++.+.++   ....++++|+|.||..||.+|++.+..||+||+.+...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            457899999999863   223334489999999999999999999999999987654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.7e-12  Score=100.77  Aligned_cols=57  Identities=28%  Similarity=0.587  Sum_probs=46.6

Q ss_pred             ccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC---CCCCccCcccCCCC
Q 017037          319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKASVMADS  375 (378)
Q Consensus       319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k---~sCPICR~~l~~~~  375 (378)
                      ...+...|+||++.|...+...++++|+|.||..||.+|++.+   ..||+||+.+...+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            3455678999999999876534455899999999999999876   78999999886554

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=97.40  Aligned_cols=53  Identities=25%  Similarity=0.505  Sum_probs=44.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ..+...|+||++.+.+.   ..+++|+|.||..||.+|++.+..||+||+.+...+
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            34567899999999863   334489999999999999999999999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.25  E-value=3.3e-13  Score=115.02  Aligned_cols=53  Identities=26%  Similarity=0.655  Sum_probs=2.1

Q ss_pred             cCCCCccceecccccCC-------------C-ceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNM-------------D-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~g-------------e-~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ...++.|+||++.|...             + .+.++++|+|.||..||.+||+.+.+||+||+++.
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCCC---------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            34568899999999752             2 23344589999999999999999999999999854

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.4e-12  Score=98.91  Aligned_cols=51  Identities=29%  Similarity=0.839  Sum_probs=43.9

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ..+...|+||++.+..    ..+ +|+|.||..||.+|++.+..||+||+.+...+
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            3456789999999886    344 89999999999999999999999999987654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.5e-12  Score=100.93  Aligned_cols=54  Identities=22%  Similarity=0.612  Sum_probs=44.7

Q ss_pred             cCCCCccceecccccCCCceeeecccC-----CcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMK--NVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k--~sCPICR~~l~~~~  375 (378)
                      ..++..|.||+++|..++.+ ++ ||.     |.||..||++||..+  .+||+||+.+..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            44567899999999877665 44 896     999999999999875  48999999986544

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.7e-12  Score=98.09  Aligned_cols=50  Identities=22%  Similarity=0.526  Sum_probs=42.6

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ..++..|+||++.+.+.   ..+ +|+|.||..||.+|++.+..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34567899999998753   344 899999999999999999999999998854

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=9.1e-12  Score=94.88  Aligned_cols=53  Identities=36%  Similarity=0.702  Sum_probs=43.4

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCccCcccCCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKASVMADSE  376 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPICR~~l~~~~e  376 (378)
                      ..++..|+||++.+.+   ...+ +|+|.||..||.+|++   .+..||+||+.+..++.
T Consensus        17 ~~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           17 LQEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             CccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            3456789999999985   3344 8999999999999997   35689999999876654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=8.6e-12  Score=93.93  Aligned_cols=49  Identities=35%  Similarity=0.838  Sum_probs=41.5

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      .+..|+||++.+.++  +..+ +|+|.||..||.+|++.+..||+||+.+..
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMAL-PCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEET-TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCC--cEec-CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            457899999998753  3344 899999999999999999999999998753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.18  E-value=1.4e-11  Score=95.08  Aligned_cols=52  Identities=25%  Similarity=0.637  Sum_probs=42.3

Q ss_pred             cCCCCccceecccccCCCceeeecc-cCCcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--~sCPICR~~l~~~~  375 (378)
                      ..++..|+||++.|.++   ..+ + |+|.||..||.+|++.+  ..||+||+.+...+
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCCCcCCChHHhCC---eEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            34567899999999864   234 7 99999999999999875  68999999865543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=96.38  Aligned_cols=48  Identities=21%  Similarity=0.491  Sum_probs=41.3

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .....|+||++.+.++   .+ ++|+|.||..||.+|++....||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VV-TKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4467899999999763   23 489999999999999999999999999875

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=92.60  Aligned_cols=52  Identities=23%  Similarity=0.569  Sum_probs=42.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~~~  375 (378)
                      ..+...|+||++.+.++.   .+ +|+|.||..||.+|++ .+..||+||+.+..++
T Consensus        12 ~~~~~~C~IC~~~~~~p~---~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPK---QT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CCCCEECTTTCCEESSCC---CC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CCcCCCCCCCChHhcCee---EC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            345678999999998652   23 8999999999999995 5678999999987654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.15  E-value=1.7e-11  Score=91.90  Aligned_cols=53  Identities=21%  Similarity=0.528  Sum_probs=43.5

Q ss_pred             CCccceecc-cccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          323 EGNCVICLE-EYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLe-ef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      +..|+||++ .+.++....++++|||.||..||.+|+.. +..||+||+.+...+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            568999999 78776654455589999999999999765 467999999987654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.15  E-value=1.1e-11  Score=106.60  Aligned_cols=48  Identities=35%  Similarity=0.888  Sum_probs=41.5

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      ++..|+||++.|.++   ..+ +|||.||..||.+|+..+..||+||+.+..
T Consensus        52 ~~~~C~iC~~~~~~~---~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTL-NCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCc---eEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            456899999999853   344 899999999999999999999999998854

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.13  E-value=3.8e-11  Score=93.09  Aligned_cols=52  Identities=33%  Similarity=0.693  Sum_probs=43.1

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l~~~~  375 (378)
                      ..++..|+||++.+..+  + . ++|+|.||..||.+|+..      ...||+||+.+..++
T Consensus        16 ~~~~~~C~IC~~~~~~p--~-~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP--V-S-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC--E-E-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhCcc--e-e-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            34567899999999864  2 3 489999999999999987      678999999987553

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.12  E-value=1.8e-11  Score=102.09  Aligned_cols=55  Identities=24%  Similarity=0.665  Sum_probs=44.8

Q ss_pred             CCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .++..|+||++.|.++   ....++++|||.||..||.+||+.+.+||+||+.+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            3467899999999864   233344489999999999999999999999999886543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.12  E-value=3.4e-11  Score=93.09  Aligned_cols=52  Identities=29%  Similarity=0.553  Sum_probs=43.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      ..++..|+||++.+.++   ..+ +|||.||..||.+|+.. +..||+||+.+..++
T Consensus         5 ~~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~   57 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CcccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence            34578899999999864   334 89999999999999987 788999999886543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=5.2e-11  Score=92.28  Aligned_cols=52  Identities=31%  Similarity=0.724  Sum_probs=43.2

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l~~~~  375 (378)
                      ..+...|+||++.+.+.   ..+ +|+|.||..||.+|+..      ...||+||+.+..++
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQP---LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCTTTCSCCSSC---BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             ccCCCCCCCCCcccCCc---eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            34567899999999864   234 89999999999999987      778999999987554

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.09  E-value=2.2e-11  Score=99.49  Aligned_cols=52  Identities=27%  Similarity=0.716  Sum_probs=42.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~~  375 (378)
                      .++..|+||++.|.+   ...+++|||.||..||.+|++.+ ..||+||+.+..++
T Consensus        20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            346789999999985   33425899999999999999987 69999999986543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.09  E-value=1.8e-11  Score=94.40  Aligned_cols=52  Identities=37%  Similarity=0.650  Sum_probs=42.8

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-------CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-------k~sCPICR~~l~~~~  375 (378)
                      ..++..|+||++.|.++   ..+ +|+|.||..||.+|++.       ...||+||+.+..++
T Consensus         9 ~~~~~~C~IC~~~~~~p---~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            9 VQEEVTCPICLELLTEP---LSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCEETTTTEECSSC---CCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             cccCCCCcCCCcccCCe---eEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            34567899999999864   234 89999999999999986       568999999986543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=86.70  Aligned_cols=44  Identities=36%  Similarity=0.781  Sum_probs=36.7

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCcc
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC  367 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPIC  367 (378)
                      ..++..|+||++.+.++   ..+ +|+|.||..||.+|++   .+..||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            44567899999999864   334 8999999999999998   45689998

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.05  E-value=6.5e-11  Score=97.35  Aligned_cols=52  Identities=29%  Similarity=0.668  Sum_probs=43.7

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      ..++..|+||++.+.++   ..+++|||.||..||.+|+..+..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            34578899999999853   34448999999999999999999999999988653

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=92.49  Aligned_cols=49  Identities=27%  Similarity=0.670  Sum_probs=40.7

Q ss_pred             cCCCCccceecccccCCCceeeecc-cCCcccHHHHHHHHhcC--CCCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--~sCPICR~~l~  372 (378)
                      ..++..|+||++.|.++   ..+ + |||.||..||.+|+...  ..||+||+.+.
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            45678899999999864   234 7 99999999999999754  58999999873

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.04  E-value=5.6e-11  Score=96.16  Aligned_cols=49  Identities=35%  Similarity=0.763  Sum_probs=41.9

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      +...|+||++.|.++   ..+++|||.||..||.+|+..+..||+||+.+..
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            457899999999863   3344899999999999999999999999998864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=83.91  Aligned_cols=44  Identities=36%  Similarity=0.982  Sum_probs=36.1

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCcc
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC  367 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPIC  367 (378)
                      ..++..|+||++.+.++    ++++|+|.||..||.+|+.   .+..||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999999875    2348999999999999954   46789998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.02  E-value=6.7e-11  Score=98.62  Aligned_cols=55  Identities=24%  Similarity=0.665  Sum_probs=44.9

Q ss_pred             CCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .+...|+||++.|...   ....++++|+|.||..||++||+.+++||+||+.+..++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            4567899999999763   223344489999999999999999999999999987543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.1e-10  Score=90.42  Aligned_cols=52  Identities=21%  Similarity=0.515  Sum_probs=42.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~~l~~~~  375 (378)
                      .....|.||.+.+..++..   ..|+|.||..||.+||+.+  .+||+||+++..+.
T Consensus        13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            3457899999999876433   2799999999999999987  88999999876443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.00  E-value=1.2e-10  Score=97.95  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=40.6

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~  373 (378)
                      ++..|+||++.|..+   ..+ +|||.||..||..|+..+. .||+||+.+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            457899999999854   334 8999999999999998654 89999999865

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=2.8e-10  Score=93.19  Aligned_cols=49  Identities=35%  Similarity=0.661  Sum_probs=40.8

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC---CCCccCcccCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~---sCPICR~~l~~~~  375 (378)
                      ...|+||++.+.++   ..+ +|||.||..||.+|+..+.   .||+||..+...+
T Consensus        21 ~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIKEP---VST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhcCe---EEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            46899999999864   234 8999999999999998754   8999999887544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.97  E-value=2.5e-10  Score=100.50  Aligned_cols=49  Identities=35%  Similarity=0.682  Sum_probs=41.1

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~  373 (378)
                      +...|+||++.|.++   ..+++|+|.||..||.+|+.. +..||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            456899999999863   344489999999999999997 7789999998853

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.93  E-value=3.3e-10  Score=99.43  Aligned_cols=49  Identities=22%  Similarity=0.477  Sum_probs=41.3

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD  374 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~~  374 (378)
                      +...|+||++.|.++   ..+ +|+|.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            457899999999864   234 8999999999999998764 899999998765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.92  E-value=3.1e-10  Score=94.96  Aligned_cols=51  Identities=24%  Similarity=0.597  Sum_probs=42.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD  374 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~~  374 (378)
                      ..++..|+||++.+.++   ..+ +|+|.||..||.+|++.+. .||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcCChhhcCe---EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            34567899999999864   334 8999999999999998765 999999988653

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.88  E-value=1.6e-10  Score=95.89  Aligned_cols=47  Identities=30%  Similarity=0.632  Sum_probs=39.9

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~  372 (378)
                      ++..|+||++.+..+   ..+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus        14 ~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           14 SECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            457899999999864   344 89999999999999976 678999999874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.88  E-value=1.2e-09  Score=86.38  Aligned_cols=56  Identities=20%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      ..++..|+||++.+...+.....++|||.||..||.+|+.. ...||+||+.+....
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            35667899999998654333221259999999999999854 578999999886544

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.86  E-value=7.8e-10  Score=91.81  Aligned_cols=50  Identities=24%  Similarity=0.536  Sum_probs=41.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      ++..|+||++.+.++   ..+ +|||.||..||.+|+.. ...||+||+.+...+
T Consensus        22 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILADP---VET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcCc---EEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            357899999999853   234 89999999999999987 678999999986543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.86  E-value=1.2e-09  Score=87.05  Aligned_cols=50  Identities=10%  Similarity=-0.009  Sum_probs=42.8

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~  374 (378)
                      .+...|+||++.+.++    ++++|||.|+..||.+|+..+.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4567899999999975    3348999999999999999889999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.83  E-value=1.8e-09  Score=88.95  Aligned_cols=51  Identities=12%  Similarity=0.026  Sum_probs=43.4

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .+...|+||++.+.++   .++ +|||.|+..||.+||..+.+||+||..+..++
T Consensus        27 p~~~~CpI~~~~m~dP---V~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   77 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESM   77 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred             cHhhCCcCccCcccCC---eEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence            4567899999999975   234 79999999999999998889999999986543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.83  E-value=2.1e-09  Score=88.21  Aligned_cols=51  Identities=12%  Similarity=0.021  Sum_probs=43.5

Q ss_pred             CCCCccceecccccCCCceeeecccC-CcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCg-H~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .++..|+||++.+.++    ++++|| |.|+..||.+||..+.+||+||..+..++
T Consensus        20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~   71 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence            3567899999999975    334899 99999999999998889999999887543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.82  E-value=1.4e-09  Score=82.40  Aligned_cols=49  Identities=31%  Similarity=0.514  Sum_probs=40.4

Q ss_pred             CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ++..|.||++...+.  +...+||||. ||..|+.+|++.+..||+||+.+.
T Consensus         7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            467899999987753  3222389999 899999999998899999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.80  E-value=1.3e-09  Score=94.77  Aligned_cols=49  Identities=22%  Similarity=0.480  Sum_probs=40.9

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVM  372 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~  372 (378)
                      ..++..|+||++.+.++   ..+ +|||.||..||.+|++... .||+||.++.
T Consensus        28 l~~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CCcCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            34567899999999875   234 8999999999999998765 8999999764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=2.1e-09  Score=79.04  Aligned_cols=48  Identities=27%  Similarity=0.435  Sum_probs=39.1

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .+...|+||++.|.++    ++++|+|.||..||.+|   ...||+||+.+..+.
T Consensus         4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            4567899999999864    33489999999999884   678999999986543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.76  E-value=3e-09  Score=106.88  Aligned_cols=47  Identities=30%  Similarity=0.720  Sum_probs=40.1

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMA  373 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~  373 (378)
                      ...|+||++.+.+   +..+ +|||.||..||..|+. .+..||+||+.+..
T Consensus       332 ~~~C~ICle~~~~---pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCC---eEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            4689999999865   3344 8999999999999998 67899999998754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=1.6e-09  Score=90.43  Aligned_cols=49  Identities=18%  Similarity=0.508  Sum_probs=40.4

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      +...|+||++.|.++   ..+.+|||.||..||..|+.  ..||+||..+...+
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence            467899999999864   23328999999999999998  78999999985443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.75  E-value=4.3e-09  Score=79.41  Aligned_cols=49  Identities=20%  Similarity=0.399  Sum_probs=40.4

Q ss_pred             CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ....|.||++...+.  +...+||||. ||..|+.+|.+....||+||+.+.
T Consensus         6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            456899999987642  3333489999 999999999988889999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.70  E-value=6.4e-09  Score=96.64  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~  374 (378)
                      .....|+||++.+.++    +.++|||.||..||.+|+... .+||+||.++...
T Consensus       206 ~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          206 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            4567899999999975    334899999999999999874 4599999988543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.65  E-value=4.1e-09  Score=81.65  Aligned_cols=43  Identities=28%  Similarity=0.682  Sum_probs=36.3

Q ss_pred             CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ++..|+||++.+.+   +..+ ||+|. ||..|+.+|    ..||+||+.+.
T Consensus        23 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFV-PCGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEE-TTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             cCCCCCCCCCCCCC---EEEc-CCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            35689999999875   3344 89999 999999998    88999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.60  E-value=1.2e-08  Score=89.92  Aligned_cols=51  Identities=24%  Similarity=0.602  Sum_probs=42.2

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD  374 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~  374 (378)
                      ..+...|+||++.+.++   ..+ +|||.||..||.+|+..+ ..||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhhcCc---EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            45567899999999864   334 899999999999999865 4999999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.4e-08  Score=82.11  Aligned_cols=47  Identities=30%  Similarity=0.553  Sum_probs=37.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC------CCCCc--cCcc
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK------NVCPI--CKAS  370 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k------~sCPI--CR~~  370 (378)
                      ..+..|+||++.|.++   +++..|||.|+..||.+||..+      ..||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4567899999999964   2342499999999999999764      48999  9866

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.56  E-value=1.2e-08  Score=101.26  Aligned_cols=52  Identities=29%  Similarity=0.660  Sum_probs=40.5

Q ss_pred             CCCCccceecccccCCCce----eeecccCCcccHHHHHHHHhcC-----------CCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDV----GTLKSCGHDYHVTCIKKWLSMK-----------NVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v----~~LlpCgH~FH~~CI~kWLk~k-----------~sCPICR~~l~  372 (378)
                      .....|+||++.+.++.++    ...++|+|.||..||.+||+..           +.||.||+++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3567899999999873332    2334799999999999999752           46999999875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.47  E-value=8.3e-08  Score=72.31  Aligned_cols=48  Identities=29%  Similarity=0.755  Sum_probs=36.8

Q ss_pred             CCCCccceecccccCCCceeeecccC--C---cccHHHHHHHHhc--CCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCG--H---DYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCg--H---~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      .+...|.||+++..  +.+ ++ ||.  +   .||..||.+||..  +.+||+||..+.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34578999999843  333 34 765  4   8999999999975  578999999875

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=6.1e-08  Score=74.94  Aligned_cols=43  Identities=26%  Similarity=0.670  Sum_probs=35.0

Q ss_pred             CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      +..|+||++.+.+.    +++||+|. ||..|+.+    ...||+||+.+..
T Consensus        25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            45799999998753    34489999 99999964    4789999998854

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.43  E-value=7.6e-08  Score=87.43  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=41.2

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~  374 (378)
                      .....|+||++.+.++    ++++|||.|+..||.+|+... .+||+|+..+...
T Consensus       104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            4567899999999974    334899999999999999874 4699999987543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.8e-07  Score=71.69  Aligned_cols=44  Identities=30%  Similarity=0.668  Sum_probs=35.8

Q ss_pred             CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA  373 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~~  373 (378)
                      +...|.||++...+   + +++||+|. ||..|+..    ...||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~---~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---W-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCC---C-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCC---E-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            46789999998764   3 45599999 99999984    5789999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.37  E-value=1.1e-07  Score=76.32  Aligned_cols=48  Identities=25%  Similarity=0.646  Sum_probs=38.5

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--------CCCCc--cCcc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--------NVCPI--CKAS  370 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--------~sCPI--CR~~  370 (378)
                      +...|+||++++..++.+ .+.+|+|.||..||.+++..+        -.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            356899999999876444 444799999999999999641        36999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.30  E-value=8.2e-08  Score=75.60  Aligned_cols=42  Identities=31%  Similarity=0.729  Sum_probs=34.6

Q ss_pred             CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      +..|.||++.+.+   +..+ ||||. ||..|+..|    ..||+||+.+.
T Consensus        18 ~~~C~IC~~~~~~---~v~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~   60 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFC-PCGHTVCCESCAAQL----QSCPVCRSRVE   60 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEE-TTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred             CCEeEEeCcccCc---EEEE-CCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence            4689999998764   3344 89999 999999887    38999999874

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.28  E-value=1.9e-07  Score=70.45  Aligned_cols=49  Identities=10%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ..|+||++.+.++  | .+.+|||.|.+.||.+||+.+.+||+++.++..++
T Consensus         4 ~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~   52 (61)
T 2bay_A            4 MLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   52 (61)
T ss_dssp             CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             EEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence            5799999999964  3 33279999999999999998888999999886543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.21  E-value=4.1e-07  Score=87.25  Aligned_cols=51  Identities=24%  Similarity=0.437  Sum_probs=40.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCc--cCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPI--CKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPI--CR~~l~~~  374 (378)
                      .....|+||++.|.++  |. ...|||.||+.||.+|+..+  ..||+  |++.+...
T Consensus       179 ~~el~CPIcl~~f~DP--Vt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             ceeeECcCccCcccCC--ee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            4567899999999865  43 33799999999999999864  46999  99977543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.20  E-value=2.2e-07  Score=92.04  Aligned_cols=43  Identities=30%  Similarity=0.754  Sum_probs=36.5

Q ss_pred             CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ++..|+||++.+.+   +..+ ||||. ||..||..|    ..||+||+.+.
T Consensus       294 ~~~~C~IC~~~~~~---~v~l-pCgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFI-PCGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEE-TTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCc---eEEc-CCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            46789999999875   3344 89999 999999988    78999999875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.89  E-value=7.3e-06  Score=68.08  Aligned_cols=45  Identities=24%  Similarity=0.470  Sum_probs=36.5

Q ss_pred             ccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccC
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM  372 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~  372 (378)
                      .|.+|--.+..   -+++.||+|+||.+|+..|.++ .++||+|+..+.
T Consensus         3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            58888777664   3455599999999999999865 588999999875

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.45  E-value=6.3e-05  Score=70.77  Aligned_cols=50  Identities=22%  Similarity=0.542  Sum_probs=40.3

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC--CCCccCcccCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--VCPICKASVMAD  374 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~--sCPICR~~l~~~  374 (378)
                      ....|.||.+.+..+.   ++..|++.||..|+.+|++.+.  .||.|+......
T Consensus       179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            3678999999988753   3335999999999999998754  899999986543

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.74  E-value=0.065  Score=40.84  Aligned_cols=49  Identities=20%  Similarity=0.426  Sum_probs=35.7

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCcccCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASVMA  373 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~~l~~  373 (378)
                      .....|.||.+.    .++...-.|...||..|+...|....    .||.|++...+
T Consensus        10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            345679999753    34555557999999999998886532    59999876543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.22  E-value=0.064  Score=42.72  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHH-HH
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WL  358 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~k-WL  358 (378)
                      ++..|.||++.+... .+...+.|+|.||..||.. |.
T Consensus         2 ee~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHhc
Confidence            357899999875432 3444458999999999998 53

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=88.86  E-value=0.1  Score=38.74  Aligned_cols=50  Identities=24%  Similarity=0.437  Sum_probs=36.0

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCcc
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKAS  370 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~  370 (378)
                      .+...|+||...+.++...+..-.|.-.||..|+.--..     .+-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            355679999999875555555557999999999864322     23469999764

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=87.03  E-value=0.53  Score=36.45  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~l~  372 (378)
                      ...| ||...+......+..-.|.-.||..|+.--..     .+-.||.|+....
T Consensus        12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~   65 (79)
T 1wep_A           12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence            3445 99998864445555557999999999953221     2346999987643

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=86.62  E-value=0.36  Score=35.82  Aligned_cols=47  Identities=19%  Similarity=0.609  Sum_probs=33.5

Q ss_pred             cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcc
Q 017037          320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKAS  370 (378)
Q Consensus       320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~  370 (378)
                      ...+..|.||.+.    .++...-.|.-.||..|+..=|...    =.||.|+..
T Consensus         8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3456789999863    3454555788999999998755432    249999765

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=86.03  E-value=0.22  Score=38.12  Aligned_cols=50  Identities=18%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc----CCCCCccCcccC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM----KNVCPICKASVM  372 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~----k~sCPICR~~l~  372 (378)
                      +...|.||..... ++.+...-.|.-.||..|+..-+..    .-.||.|+..+.
T Consensus        17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            3456999988764 4444455579999999999764432    235999988764

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=82.58  E-value=1.6  Score=35.23  Aligned_cols=37  Identities=14%  Similarity=0.451  Sum_probs=25.0

Q ss_pred             ccCCCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017037          319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW  357 (378)
Q Consensus       319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW  357 (378)
                      ....+..|.||- .+...+... .--|+-+||..|+.+-
T Consensus        11 ~~~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           11 PVVNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred             CCCCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence            344678999984 344433322 2248999999999996

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=81.32  E-value=1.2  Score=31.92  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ccceecccccCCCceeeec-ccCCcccHHHHHHHH----hcCCCCCccC
Q 017037          325 NCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWL----SMKNVCPICK  368 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~kWL----k~k~sCPICR  368 (378)
                      .|.||...+.+++..+..- .|.-.||..|+.--.    ..+-.||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            5889999987666565665 588899999985321    2456799986

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=81.26  E-value=0.25  Score=40.70  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=35.0

Q ss_pred             CCccceecccccCCCceeeec-ccCCcccHHHHHHHH----h------cCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWL----S------MKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~kWL----k------~k~sCPICR~~l~  372 (378)
                      ...|.||...|.........- .|.-.||..|+.--.    .      .+-.||.|+....
T Consensus         3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~   63 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE   63 (105)
T ss_dssp             CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred             cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence            457999999987655555554 588999999984211    0      2346999987543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=81.05  E-value=0.36  Score=35.81  Aligned_cols=48  Identities=21%  Similarity=0.578  Sum_probs=32.9

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l~  372 (378)
                      ..+..|.||.+.   + .+...-.|.-.||..|+..=|...    =.||.|+....
T Consensus         7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   58 (61)
T 1mm2_A            7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence            456779999853   2 344444688999999998655432    24999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-18
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-09
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	7e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 74.9 bits (184), Expect = 6e-18
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           M +   C +CL E ++ ++   L  CGH +H  C+  WL   + CP+C+ +V
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 60.7 bits (147), Expect = 9e-13
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           C ICLE+  N         C H +   CI +W+     CP+CK  V
Sbjct: 8   CPICLEDPSNYS---MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 5e-11
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 313 IYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASV 371
           +YC      +   C IC E  K++     ++ CGH    +C+  W   +   CP C+  +
Sbjct: 15  LYCEMGSTFQL--CKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 7e-10
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPICKASV 371
           C +C+E  +  D      +CG+     C  +  + +N  CP C+   
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 14/62 (22%)

Query: 322 EEGNCVICLEEYKN--------------MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 367
              NC IC     +               +       C H +H  CI +WL  + VCP+ 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 368 KA 369
             
Sbjct: 80  NR 81

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 322 EEGNCVICLEEYKNMDDVGTL-KSCGHDYHVTCIKKWLSMK-NVCPICKASV 371
           ++  C  C         +  +   CGH    +C+          CP C   +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 7/46 (15%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
           C  C  E K       L  C H     C++        CPIC+A  
Sbjct: 9   CQQCQAEAKC----PKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 321 QEEGNCVICLEEYKNMDDVG-TLKSCGHDYHVTCIKKWLS--MKNVCPICKA 369
           ++   C IC EE  N             + H +C+  WL+      C IC  
Sbjct: 4   EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASV 371
           + MQ+   C ICLE  K          C H +   C+ K L+ K     CP+CK  +
Sbjct: 16  NAMQKILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 306 SRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCP 365
            R        + D++++   C  C    +       L  C H +   C+   +     CP
Sbjct: 5   GRGAWAHSRAALDRLEKLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIGTG--CP 59

Query: 366 ICKASVMADS 375
           +C        
Sbjct: 60  VCYTPAWIQD 69

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 13/88 (14%)

Query: 295 SVSTGLSEDLISRCLTES--------IYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCG 346
           S S+G  E +I +   E         I C        G   +   +      VG L  C 
Sbjct: 3   SGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS 62

Query: 347 HDYHVTCIKKWLSMKNV-----CPICKA 369
           H +H+ C+       N      CP CK 
Sbjct: 63  HAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASV 371
               +  +C IC     +        SC H +   CI + L  M + CP C+   
Sbjct: 18  AHFVKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 7e-05
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--------VCPICK 368
           C +CL EY       T+  C   +   C+K+++ +           CP   
Sbjct: 8   CKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (82), Expect = 4e-04
 Identities = 4/50 (8%), Positives = 14/50 (28%), Gaps = 3/50 (6%)

Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
           C I  +                 +  + +++++      PI    +  + 
Sbjct: 3   CAISGK---VPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.62
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.44
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.4
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.35
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.35
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.33
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.06
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.06
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.01
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.98
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.87
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.83
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.83
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.61
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.25
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	90.47
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.1
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	86.81
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	83.75
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	82.89
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	82.64
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.73

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.62  E-value=6.6e-17  Score=118.69  Aligned_cols=52  Identities=31%  Similarity=0.952  Sum_probs=47.7

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      +++..|+||+++|..++.+.++++|+|.||..||.+||+.+++||+||++|+
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            3456799999999999999888789999999999999999999999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=4.8e-14  Score=115.75  Aligned_cols=72  Identities=29%  Similarity=0.599  Sum_probs=52.1

Q ss_pred             CCCCCHHHHHhhccceeeecccccCCCCccceecccccCC--------------CceeeecccCCcccHHHHHHHHhcC-
Q 017037          297 STGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNM--------------DDVGTLKSCGHDYHVTCIKKWLSMK-  361 (378)
Q Consensus       297 ~tGlSee~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~g--------------e~v~~LlpCgH~FH~~CI~kWLk~k-  361 (378)
                      ..+.+++++.+++...      ....+..|+||++++...              +.+..+++|+|.||..||.+||+.+ 
T Consensus         5 ss~~pe~v~~~~~e~~------~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~   78 (114)
T d1v87a_           5 SSGEPEQVIRKYTEEL------KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN   78 (114)
T ss_dssp             SSCCHHHHHHHHEEEC------SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHh------cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC
Confidence            3556677777655432      233467899999998542              3345666999999999999999754 


Q ss_pred             ----CCCCccCcccCCC
Q 017037          362 ----NVCPICKASVMAD  374 (378)
Q Consensus       362 ----~sCPICR~~l~~~  374 (378)
                          .+||+||+.+..+
T Consensus        79 ~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          79 KDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSSCCBCTTTCCBSSSC
T ss_pred             cCCCCccccccchhccC
Confidence                3799999877544

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.5e-14  Score=102.52  Aligned_cols=50  Identities=20%  Similarity=0.406  Sum_probs=42.8

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMA  373 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~  373 (378)
                      .+|+||+++|..++.+..+++|+|.||..||++|++. ++.||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            3799999999887766566689999999999999986 4579999998864

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.35  E-value=1.8e-13  Score=103.56  Aligned_cols=47  Identities=34%  Similarity=0.805  Sum_probs=40.7

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      .+.|+||++.+.+  .++ +++|+|.||..||.+||+.+++||+||+++.
T Consensus         5 ~d~C~IC~~~~~~--~~~-~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPSN--YSM-ALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCS--CEE-ETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCccC--CcE-EeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            4679999999975  343 4489999999999999999999999999874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.9e-13  Score=102.68  Aligned_cols=55  Identities=16%  Similarity=0.385  Sum_probs=43.5

Q ss_pred             CCCccceecccccCC-CceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCCC
Q 017037          322 EEGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADSE  376 (378)
Q Consensus       322 ed~~C~ICLeef~~g-e~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~e  376 (378)
                      ++..|+||++++..+ +.+..+++|+|.||..||.+||+. ++.||+||+.+...+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            468899999986443 344455589999999999999965 5679999999866553

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.8e-13  Score=106.50  Aligned_cols=52  Identities=27%  Similarity=0.645  Sum_probs=42.3

Q ss_pred             CCCCccceecccccCCCc--------------eeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDD--------------VGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~--------------v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~  372 (378)
                      ..++.|+||++.+.....              ...+++|+|.||..||.+||+.+++||+||++..
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            346679999998866321              2344589999999999999999999999999864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.6e-12  Score=99.97  Aligned_cols=48  Identities=29%  Similarity=0.737  Sum_probs=39.8

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD  374 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~  374 (378)
                      ...|+||++.+.+   ++. ++|||.||..||.+||+. ++.||+||+.|...
T Consensus        23 ~~~C~IC~~~~~~---~~~-~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKD---VKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCC---EEC-SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEE-eCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3569999999875   444 489999999999999985 57899999998653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.3e-11  Score=89.90  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=41.0

Q ss_pred             ccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      .|+||++.++++  + .++.|||.||.+||.+||+.+++||+||+++..++
T Consensus         2 ~C~Ic~~~~~~P--v-~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           2 LCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCccCCchHHhc--C-ccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            599999999863  3 34469999999999999999999999999886554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.9e-11  Score=96.81  Aligned_cols=49  Identities=35%  Similarity=0.661  Sum_probs=40.5

Q ss_pred             CCccceecccccCCCceeeecccCCcccHHHHHHHHhcC---CCCCccCcccCCCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKASVMADS  375 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k---~sCPICR~~l~~~~  375 (378)
                      ...|+||++.|.++   ..+ +|||.||..||.+|++.+   ..||+||..+...+
T Consensus        21 ~l~CpIC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELIKEP---VST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCCSSC---CBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchhCCe---EEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            46799999999864   234 899999999999999764   37999999986554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-11  Score=90.00  Aligned_cols=48  Identities=27%  Similarity=0.472  Sum_probs=39.3

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE  376 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e  376 (378)
                      +...|+||++.|.++    ++++|+|.||..||.+|   +..||+||+.+.....
T Consensus         5 ~~l~C~IC~~~~~~p----~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCCcccCcccCCC----EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            346899999999864    33489999999999876   6789999999976543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=6.2e-11  Score=93.98  Aligned_cols=50  Identities=24%  Similarity=0.536  Sum_probs=40.6

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~  375 (378)
                      +...|+||++.+.++   .++ +|||.||..||.+|++. +..||+||.++...+
T Consensus        22 ~~l~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          22 KSISCQICEHILADP---VET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCcCCccCCcchhcc---eec-CCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            346799999999863   344 89999999999999975 468999999876443

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.98  E-value=1.2e-10  Score=85.48  Aligned_cols=52  Identities=25%  Similarity=0.506  Sum_probs=38.3

Q ss_pred             CCCCccceecccccCCCcee-eecccCCcccHHHHHHHHhc--CCCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVG-TLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~-~LlpCgH~FH~~CI~kWLk~--k~sCPICR~~l~  372 (378)
                      ++...|.||++++....... ....|+|.||..||.+|+..  +.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45678999999987542211 11235699999999999964  568999999874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.6e-10  Score=92.20  Aligned_cols=49  Identities=20%  Similarity=0.554  Sum_probs=39.7

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      +...|+||++.|.++  + .+.+|||.||..||.+|+.  +.||+||..+...+
T Consensus        21 ~~l~C~IC~~~~~~p--v-~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--V-CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             HTTSCSSSCSCCSSC--B-CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hcCCCccCCchhhcC--c-eeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            356899999999865  2 3448999999999999984  45999999876544

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=1.1e-09  Score=84.01  Aligned_cols=51  Identities=29%  Similarity=0.542  Sum_probs=42.5

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMADS  375 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~~  375 (378)
                      -++..|+||++.+.++   .++ +|||.||..||.+|+..+ ..||+|+..+...+
T Consensus         6 P~~l~CpIc~~~m~dP---V~~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CccCCCcCcCchhhCc---eEc-cCCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            3578899999999875   344 899999999999999875 57999999886543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=8.1e-10  Score=85.17  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=41.4

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD  374 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~  374 (378)
                      -++..|+||++.+.++  | + ++|||.||..||.+||.. +..||+||..+..+
T Consensus         5 P~~l~CpIc~~l~~dP--v-~-~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP--C-I-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE--E-E-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh--c-c-cCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3567899999999975  2 3 489999999999999975 56799999987543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=9.7e-09  Score=82.43  Aligned_cols=50  Identities=14%  Similarity=0.044  Sum_probs=41.9

Q ss_pred             CCCccceecccccCCCceeeecccC-CcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMADS  375 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCg-H~FH~~CI~kWLk~k~sCPICR~~l~~~~  375 (378)
                      ++..|+||++.+.++   +++ +|+ |.|++.||.+||+.+..||+|++.+..++
T Consensus        21 ~~f~CPI~~~lm~dP---V~~-~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~   71 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             HHhCCcCchhHHHHH---Hhc-ccccchhhHHHHHHHHHhcCCcccccccccchh
Confidence            468899999999975   244 565 58999999999999999999999987654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-07  Score=73.35  Aligned_cols=47  Identities=23%  Similarity=0.587  Sum_probs=36.1

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----C----CCCccCc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----N----VCPICKA  369 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~----sCPICR~  369 (378)
                      ....|+||++++...+.+ .+++|+|.||.+||..|++.+    .    .||.|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~-~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceE-EECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            456899999999765444 555899999999999999632    1    4998643

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.47  E-value=0.029  Score=40.00  Aligned_cols=50  Identities=24%  Similarity=0.437  Sum_probs=36.8

Q ss_pred             CCCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCccc
Q 017037          322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASV  371 (378)
Q Consensus       322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~l  371 (378)
                      ....|.||.+.+..++..+..-.|+..||..|+..=..     .+-.||.|+..-
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~   59 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcC
Confidence            45689999998877766666668999999999953211     133699997654

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.082  Score=35.89  Aligned_cols=44  Identities=23%  Similarity=0.667  Sum_probs=31.7

Q ss_pred             ccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCc
Q 017037          325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKA  369 (378)
Q Consensus       325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~  369 (378)
                      .|.||...-.. +.+...-.|...||..|+..-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58899766443 34545557999999999988765422    4999985

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.81  E-value=0.52  Score=34.65  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHH--HHH-hc--CCCCCccCcccCC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIK--KWL-SM--KNVCPICKASVMA  373 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~--kWL-k~--k~sCPICR~~l~~  373 (378)
                      ..|.||...+...+..+..-.|.-.||..|+.  ... ..  +-.||.|+....+
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp   66 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP   66 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCC
Confidence            34559998876655555566899999999994  222 11  3469999875543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.75  E-value=0.22  Score=36.09  Aligned_cols=45  Identities=20%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             CccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCcccC
Q 017037          324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASVM  372 (378)
Q Consensus       324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~~l~  372 (378)
                      ..|.||.+   .+ .+...-.|...||..|+...|....    .||.|+....
T Consensus         8 ~~C~~C~~---~~-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   56 (70)
T d1fp0a1           8 TICRVCQK---PG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD   56 (70)
T ss_dssp             SCCSSSCS---SS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred             CCCCCCCC---cC-EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCc
Confidence            34666643   33 4445557999999999998775432    4999976543

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.89  E-value=0.12  Score=36.46  Aligned_cols=48  Identities=21%  Similarity=0.578  Sum_probs=32.8

Q ss_pred             CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcccC
Q 017037          321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVM  372 (378)
Q Consensus       321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l~  372 (378)
                      ..+..|.||.+.   + ++...-.|.-.||..||...+...    -.||.|+....
T Consensus         7 ~~~~~C~~C~~~---g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~   58 (61)
T d1mm2a_           7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             CCcCCCcCCCCC---C-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCccc
Confidence            344579999753   3 444555789999999997666432    24999986543

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.64  E-value=0.16  Score=37.54  Aligned_cols=49  Identities=18%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCccceecccccCCCceeeec--ccCCcccHHHHHH----HHh-----cCCCCCccCcccCC
Q 017037          323 EGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKK----WLS-----MKNVCPICKASVMA  373 (378)
Q Consensus       323 d~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~k----WLk-----~k~sCPICR~~l~~  373 (378)
                      ...| ||......+..+ .+.  .|...||..|+.-    ...     .+-.||.|+..-.+
T Consensus        16 ~~~C-~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             ccEe-ECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCC
Confidence            3457 999877655433 342  4899999999831    111     12469999876544

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.43  Score=36.42  Aligned_cols=38  Identities=16%  Similarity=0.519  Sum_probs=27.9

Q ss_pred             cccCCCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017037          318 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW  357 (378)
Q Consensus       318 ~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW  357 (378)
                      ++...+..|.|| +.|...+... .--|+-+||..|+.+-
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~p-CRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFP-CRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-Ccccccceec-ceeecchhhHHHHHHh
Confidence            345568899999 7777654442 2248899999999987