Citrus Sinensis ID: 017069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccEEEEEccEEEcccccccccccEEEEccccccccccccccccccccHHHHccccccccHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEccHHHcccEcHHHHHHHHHHHHHHHHcccccEEEEEccccEEEccEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEEcccEEEEEccEEEcccHHHEcccccccHHHHccccccccEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
MQRLKISNISRYFNDLRALSqhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAwendpnigfvsmkgsgrafcaggdiVSLYHFMNQGKLEECKDFFRTLYSFIYLLGthlkphvailngvtmgggagvsipgtfrvacgktvfatpetligfhpdagasfylshlpghLGEFLALTGAKLNGAEMMACGLAThysvseklPLIEEELgklvtddpsVIEACLEKYsdlvypdknsvihridivdkcfglDTVEEIIDSLESeaslindpwcgsTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRArmvdrdiapkvpfhlslpkgeglcllpr
Flexible Loop (DISEMBL)
mqrlkisnISRYFNDLRALSQhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKvslrsiregrfqtfdeclvREYRMSLQGVSRLISGDFYEGVRARMVDRDIapkvpfhlslpkgeglcllpr
Low Complexity Region (SEG)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Disordered region (IsUnstruct)
**********RYFNDL************TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCL***
Disordered Region (DISOPRED)
************************************LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY***********IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Disordered Region (DISEMBL)
MQRLKISNISRYFNDLRALS*********DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Disordered Region (DISPRO)
*QRLKISNISRYFNDLRALSQHRTSS******CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPKVPFHLSLPKGEGLCLLPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q5XF59	401	3-hydroxyisobutyryl-CoA h	yes	no	0.880	0.830	0.708	1e-132
Q8RXN4	409	3-hydroxyisobutyryl-CoA h	no	no	0.952	0.880	0.596	1e-129
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.865	0.865	0.501	2e-91
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.865	0.865	0.489	1e-89
Q1PEY5	378	Probable 3-hydroxyisobuty	no	no	0.865	0.865	0.483	2e-86
Q9SHJ8	387	3-hydroxyisobutyryl-CoA h	no	no	0.854	0.834	0.424	3e-75
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.875	0.857	0.405	7e-63
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.894	0.877	0.380	1e-61
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.902	0.885	0.383	7e-61
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.896	0.880	0.375	2e-60

>sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1

 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/333 (70%), Positives = 280/333 (84%)

Query: 28  VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS 87
            ++DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGS
Sbjct: 31  TSEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS 90

Query: 88  GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
           GRAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG G
Sbjct: 91  GRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTG 150

Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
           VSIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+A
Sbjct: 151 VSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLA 210

Query: 208 CGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267
           CGLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF
Sbjct: 211 CGLATHYIRSEEVPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270

Query: 268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVR 327
             DTVEEIIDSLE EAS   D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+R
Sbjct: 271 SHDTVEEIIDSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIR 330

Query: 328 EYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           EYRMSLQG+   +SG+F EGVRAR++D+D APK
Sbjct: 331 EYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPK 363

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/367 (59%), Positives = 288/367 (78%), Gaps = 7/367 (1%)

Query: 1   MQRLK-ISNISRYFNDLRALSQHRTSSSVTD------DLCNQVLVEGKANSRMAILNRPS 53
           MQ +K +  +S     +R++S  R  S++ +      D  +QVLVEGKA SR AILN PS
Sbjct: 1   MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query: 54  ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
           +LNAL+  M  +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G  EE K
Sbjct: 61  SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
            FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct: 121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query: 174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
           PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct: 181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query: 234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 293
           DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct: 241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query: 294 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353
           TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF EG+RAR+V
Sbjct: 301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query: 354 DRDIAPK 360
           D+D APK
Sbjct: 361 DKDFAPK 367

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/327 (50%), Positives = 222/327 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++  V +KG GRAFCA
Sbjct: 5   SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct: 65  GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct: 125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct: 185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct: 245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
             +   +S D  EG RA ++D+D  PK
Sbjct: 305 HVMKGDLSKDLVEGCRAILIDKDRNPK 331

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  330 bits (846), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 223/327 (68%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
             +   IS DF EG RA +VD+D  PK
Sbjct: 309 HVMKGEISKDFVEGCRAILVDKDKNPK 335

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1

 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 222/327 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAF A
Sbjct: 5   SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct: 65  GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct: 185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
             +   IS DF EG RA ++D+D  PK
Sbjct: 305 HVMKGDISKDFVEGCRAVLIDKDRNPK 331

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 138/325 (42%), Positives = 209/325 (64%), Gaps = 2/325 (0%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V+ E K + R+  LNRP  LN ++  +  KL +  + WE D     + +KG+GRAF AGG
Sbjct: 13  VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct: 73  DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
           V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct: 131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
            S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct: 191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query: 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
           I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct: 251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query: 336 VSRLISGDFYEGVRARMVDRDIAPK 360
           + + IS D YEG+RA  +D+D +PK
Sbjct: 311 LRKTISPDMYEGIRALTIDKDNSPK 335

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 201/343 (58%), Gaps = 12/343 (3%)

Query: 22  HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF 81
           H    S   D   +VL+E K  + +  LNRP  LNAL  NM  ++    K WE DP    
Sbjct: 24  HHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFL 83

Query: 82  VSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140
           + +KG+G +AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+
Sbjct: 84  IIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGI 142

Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 200
           TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L
Sbjct: 143 TMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRL 202

Query: 201 NGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIH 258
            G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y     +  DK+ ++ 
Sbjct: 203 KGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILE 262

Query: 259 R-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 317
             +D ++ CF  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG 
Sbjct: 263 EHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMSPTSLKITLRQLMEGS 318

Query: 318 FQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
            +T  E L  EYR+S Q   R    DF+EGVRA ++D+D +PK
Sbjct: 319 SKTLQEVLTMEYRLS-QACMR--GHDFHEGVRAVLIDKDQSPK 358

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 203/352 (57%), Gaps = 14/352 (3%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  ++    K 
Sbjct: 16  FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKT 73

Query: 73  WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
           WE DP+   + +KG+G +AFCAGGDI +L     + +    +D FR  Y     + +  K
Sbjct: 74  WEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNNAIASCQK 132

Query: 132 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191
           P+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L G LG 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGY 192

Query: 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 251
           FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y      
Sbjct: 193 FLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKM 252

Query: 252 DKNSVI---HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 308
           D++  I     +D ++ CF  +TVE+II++L  + S    P+    ++++ + SP SLK+
Sbjct: 253 DQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKMSPTSLKI 308

Query: 309 SLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           +LR + EG  +T  E L+ EYR++   +      DF+EGVRA ++D+D  PK
Sbjct: 309 TLRQLMEGSSKTLQEVLIMEYRITQACME---GHDFHEGVRAVLIDKDQTPK 357

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 209/357 (58%), Gaps = 16/357 (4%)

Query: 10  SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct: 11  SRFSSIRRASVILQHLRMSKHTE--TAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query: 68  KLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126
              K WE DP+   + +KG+G +AFCAGGDI +L      G+    +D FR  Y     +
Sbjct: 69  PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQ-TLSQDLFREEYILNNAI 127

Query: 127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186
            +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct: 128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query: 187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 245
           G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct: 188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query: 246 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
               +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct: 248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query: 304 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
            SLK++LR + EG  +T  E L  EYR++   +      DF+EGVRA ++D+D  PK
Sbjct: 304 TSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME---GHDFHEGVRAVLIDKDQTPK 357

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 200/352 (56%), Gaps = 13/352 (3%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct: 15  FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query: 73  WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
           WE DP    + +KG+G +AFCAGGD+ ++      G     +D+FR  Y     +GT  K
Sbjct: 74  WEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGD-TMTRDYFREEYRLDNAIGTCKK 132

Query: 132 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191
           P+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +G 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGH 192

Query: 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 251
            LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y      
Sbjct: 193 LLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKI 252

Query: 252 DKNS---VIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 308
           D+     +   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SLK+
Sbjct: 253 DQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSLKL 308

Query: 309 SLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           +LR +REG   +  +    EYR+S Q   R    DFYEGVRA ++D+D +P+
Sbjct: 309 TLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDKDQSPR 357

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255541138	415	catalytic, putative [Ricinus communis] g	0.891	0.812	0.780	1e-156
224136292	415	predicted protein [Populus trichocarpa]	0.902	0.821	0.770	1e-147
356504605	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.865	0.803	0.746	1e-146
357512815	401	3-hydroxyisobutyryl-CoA hydrolase-like p	0.910	0.857	0.696	1e-144
225453474	405	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.947	0.883	0.673	1e-140
449442604	406	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.952	0.886	0.680	1e-140
225430480	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.904	0.840	0.665	1e-136
363807438	407	uncharacterized protein LOC100808892 [Gl	0.952	0.884	0.619	1e-135
326507476	424	predicted protein [Hordeum vulgare subsp	0.865	0.771	0.697	1e-135
223973415	406	unknown [Zea mays] gi|414867666|tpg|DAA4	0.912	0.849	0.663	1e-134

>gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/337 (78%), Positives = 303/337 (89%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
           ++S+  DDL  QVLVE KA SR AILNRPSALNALNTNMGA+L KL+K+WE +P++GFV 
Sbjct: 37  SNSTDDDDLDKQVLVESKAYSRTAILNRPSALNALNTNMGARLLKLYKSWEENPDVGFVM 96

Query: 84  MKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
           MKGSGRAFCAGGDIV+LY+ + +GKLE+CK+FFRTLY+FIY+LGT+LKPHVAIL+G+TMG
Sbjct: 97  MKGSGRAFCAGGDIVTLYNLVKKGKLEDCKEFFRTLYTFIYILGTYLKPHVAILDGITMG 156

Query: 144 GGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 203
           GGAGVSIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALTG  LNG 
Sbjct: 157 GGAGVSIPGTFRIATDKTVFATPETLIGFHPDAGASFHLSHLPGHLGEYLALTGETLNGV 216

Query: 204 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263
           EM+ACGLATHYS SE+L LI+++LG+LVTDDPSVIEA LEKY DLV+PDK S +HRI+ V
Sbjct: 217 EMIACGLATHYSYSERLQLIDQQLGQLVTDDPSVIEATLEKYGDLVHPDKMSALHRIETV 276

Query: 264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE 323
           D+CFG DTVEEI ++LESEAS  ND +C STLR LKEASPLSLKVSLRSIREGRFQT D+
Sbjct: 277 DRCFGYDTVEEIFEALESEASGTNDAFCNSTLRRLKEASPLSLKVSLRSIREGRFQTLDQ 336

Query: 324 CLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           CLVREYRMSLQG+S+ IS DFYEGVRARMVDRD+APK
Sbjct: 337 CLVREYRMSLQGISKQISNDFYEGVRARMVDRDLAPK 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136292|ref|XP_002326825.1| predicted protein [Populus trichocarpa] gi|222835140|gb|EEE73575.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/344 (77%), Positives = 300/344 (87%), Gaps = 3/344 (0%)

Query: 17  RALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEND 76
           R+LS   +S    DDL NQVLVE KANSR AILNRPSALNALNTNMGA+L KL+KAWE D
Sbjct: 36  RSLS---SSPPTEDDLDNQVLVEDKANSRSAILNRPSALNALNTNMGARLLKLYKAWEKD 92

Query: 77  PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136
            ++GFV++KGSGRAF AGGDIV+LYH +NQGK E C++FF TLY+FIY+LGT+LKPHVAI
Sbjct: 93  SSVGFVTLKGSGRAFSAGGDIVNLYHLINQGKWEACREFFGTLYTFIYVLGTYLKPHVAI 152

Query: 137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT 196
           LNG+TMGGG G+SIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALT
Sbjct: 153 LNGITMGGGTGISIPGTFRLATDKTVFATPETLIGFHPDAGASFFLSHLPGHLGEYLALT 212

Query: 197 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV 256
           G  LNGAEM+ACGLATHY+ SEKL L+E  LGKLVTDDPSVIE  LE+Y DLVYPDK SV
Sbjct: 213 GGTLNGAEMIACGLATHYTNSEKLHLVEHHLGKLVTDDPSVIETSLEQYGDLVYPDKMSV 272

Query: 257 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREG 316
           +HRI++VDKCF  DTVEEI D+LE EA+  ND W  STLR LKEASPLSLKVSLRSI+EG
Sbjct: 273 LHRIEMVDKCFSHDTVEEIFDALEREAAETNDAWFNSTLRRLKEASPLSLKVSLRSIQEG 332

Query: 317 RFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           RFQT D+CLVREYRMSLQG+S+ ISGDF EGVRARMVD+D+APK
Sbjct: 333 RFQTLDQCLVREYRMSLQGISKQISGDFCEGVRARMVDKDLAPK 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504605|ref|XP_003521086.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/327 (74%), Positives = 285/327 (87%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           NQVLVEG   SRMAILNRPSALNALNTNM A L+KL+++WE DP+IGFV +KGSGRAF A
Sbjct: 42  NQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAA 101

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGDIV+LYH +N+G LE CK+FFRT YSF+YL+GT+LKPHVA+LNG+TMGGGAG+SIPGT
Sbjct: 102 GGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGT 161

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FRVA  KT+FATPE LIGFHPDA ASFYLSHLPG LGE+LALTG KLNG EM+ACGLATH
Sbjct: 162 FRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATH 221

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           YS S +LPLIEE+LGKLVTDDPSVIE  LE+Y ++V+ D +SV+ RI+++DKCF  DTVE
Sbjct: 222 YSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVE 281

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI+D++E+ AS  ND WC STL  LKEASPLSLKV+LRSIREGRFQT D+CL+REYRM+L
Sbjct: 282 EIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTL 341

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
           Q + R ISGDF EGVRAR+VD+D APK
Sbjct: 342 QAIHRQISGDFCEGVRARVVDKDFAPK 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512815|ref|XP_003626696.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520718|gb|AET01172.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/353 (69%), Positives = 292/353 (82%), Gaps = 9/353 (2%)

Query: 17  RALSQHRTSSSVTDDLCN---------QVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           R+L   R S  +T  L N          VLVEG   SR+A+LNRPS+LNA+NTNM A+L+
Sbjct: 10  RSLLMQRNSRRLTTTLSNSVDHHLLQDNVLVEGNGYSRLALLNRPSSLNAINTNMAARLH 69

Query: 68  KLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG 127
           KL+++WE++P+IGFV +KG+GRAF AGGDIVSLY F+ QG LE CK FFRT YSFIYL+G
Sbjct: 70  KLYRSWEDNPDIGFVMLKGTGRAFAAGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIG 129

Query: 128 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187
           T+LKPHVA+LNG+TMGGGAG+SIPGTFR+A  KTVFATPE LIGFHPDA ASFYLS LPG
Sbjct: 130 TYLKPHVALLNGITMGGGAGISIPGTFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPG 189

Query: 188 HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD 247
           H+GE+LALTG KLNG EM+ACGLATHYS+  +LPLIEE+LGKLVTDDPSVIE  LE+Y D
Sbjct: 190 HIGEYLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGD 249

Query: 248 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLK 307
           LV+P  +SV+ R++I+DKCFG DTVEEI+D+LE  A    D WC STL  LKEASPLSLK
Sbjct: 250 LVHPGSSSVLQRLEILDKCFGHDTVEEIVDALEVAAGQTKDAWCISTLNRLKEASPLSLK 309

Query: 308 VSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           VSLRSIREGRFQT D+CL+REYRM+LQ +S+ ISGDF EGVRAR+VD+D+APK
Sbjct: 310 VSLRSIREGRFQTLDQCLLREYRMTLQAISKQISGDFCEGVRARVVDKDMAPK 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453474|ref|XP_002274299.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial [Vitis vinifera] gi|297734569|emb|CBI16620.3| unnamed protein product [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/368 (67%), Positives = 298/368 (80%), Gaps = 10/368 (2%)

Query: 1   MQRLKISNISRYFNDLRAL---SQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQ LK+  + R  + +R+    + HR  S V      +D  ++VLVEG+  SR AILNRP
Sbjct: 1   MQSLKV--LWRRRSGIRSPPFPTHHRAFSYVPNPAAANDFDSEVLVEGEGCSRTAILNRP 58

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
             LNALNT+MGA+L  L+K+WE +P+IGFV MKGSGRAFCAGGDIV LY+ +N+G++E+C
Sbjct: 59  HVLNALNTSMGARLQNLYKSWEENPDIGFVVMKGSGRAFCAGGDIVGLYNLINKGRIEDC 118

Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
           K+FF T+YSFIYL+GT+LKP+VAIL+G+TMGGGAGVSIPG FRVA  +TVFATPETLIGF
Sbjct: 119 KEFFGTVYSFIYLVGTYLKPNVAILDGITMGGGAGVSIPGMFRVATDRTVFATPETLIGF 178

Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
           H DAGASF+LSHLPG+ GE+LALTG KLNG EM+ACGLATHY+ S KLPLIEE LGKLVT
Sbjct: 179 HTDAGASFHLSHLPGYWGEYLALTGEKLNGPEMIACGLATHYAPSAKLPLIEEGLGKLVT 238

Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 292
           DDPSVIEA LE+Y  L+ PD   ++ RI+ +DKCF   TVEEIID+LESE +   DPWC 
Sbjct: 239 DDPSVIEASLEQYGSLISPDNRGLLQRIETLDKCFSHGTVEEIIDALESETARTQDPWCS 298

Query: 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352
           STL+ LKEASPLSLKV LRSIREGRFQT D+CLVREYRMS+QG+S  IS DF EG+RARM
Sbjct: 299 STLKRLKEASPLSLKVCLRSIREGRFQTLDQCLVREYRMSVQGISGQISNDFCEGIRARM 358

Query: 353 VDRDIAPK 360
           V++D APK
Sbjct: 359 VEKDYAPK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442604|ref|XP_004139071.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/366 (68%), Positives = 303/366 (82%), Gaps = 6/366 (1%)

Query: 1   MQRLKISNISRY-FNDLRALSQHRTSSSVTD-----DLCNQVLVEGKANSRMAILNRPSA 54
           +Q LK++  +R     +R L+Q R   S+ D     D   +VLVEG+A SR AILNRPS 
Sbjct: 2   VQSLKVALFTRRSLQTIRLLTQTRNQCSLLDHSSDHDHEQEVLVEGRAWSRTAILNRPSI 61

Query: 55  LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114
           LNALNTNMGA+L++L+ +WE +P++GFV +KGSGRAFCAGGDIVSLYH +N+G++E CK 
Sbjct: 62  LNALNTNMGARLHELYNSWEENPDVGFVVLKGSGRAFCAGGDIVSLYHMINEGEIEHCKK 121

Query: 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174
           FF TLY+FIY++GT+LKPHVAILNG+TMGGG G+SIPGTFRVA  KTVFATPETLIGFHP
Sbjct: 122 FFSTLYAFIYMVGTYLKPHVAILNGITMGGGTGISIPGTFRVATDKTVFATPETLIGFHP 181

Query: 175 DAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD 234
           DAGASF+LSHLPG +GE+L LTG KL G EM+ACG+ATHYS S +LPLIEE LG LVTDD
Sbjct: 182 DAGASFHLSHLPGRMGEYLGLTGEKLKGEEMVACGVATHYSHSSRLPLIEEHLGNLVTDD 241

Query: 235 PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGST 294
            S++E+ L K+ D V+ DK SV+HRI+I+DKCF  DTVEEIIDSLE E+S   DPWC ST
Sbjct: 242 ASIVESSLNKFGDRVHLDKTSVLHRIEILDKCFSHDTVEEIIDSLEIESSKTKDPWCIST 301

Query: 295 LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD 354
           L+ LKEASPLSLKVSL+SIREGR+QT D+CL+REYRMSLQG+S+ IS DF EGVRAR+VD
Sbjct: 302 LKRLKEASPLSLKVSLKSIREGRYQTLDQCLIREYRMSLQGISKQISSDFCEGVRARLVD 361

Query: 355 RDIAPK 360
           +D++PK
Sbjct: 362 KDLSPK 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/347 (66%), Positives = 284/347 (81%), Gaps = 5/347 (1%)

Query: 19  LSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW 73
            S HR+ S++      DDL  QVLVEG+A SR AILNRPS LNAL   M A+L +L+++W
Sbjct: 22  FSHHRSFSALPNYARNDDLQEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESW 81

Query: 74  ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133
           E + ++GFV MKGSGRA C+GGD+V+L   +N+GK+EECK FF TLY F+YLLGT++KP+
Sbjct: 82  EENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPN 141

Query: 134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 193
           VAI++G+TMGGGAG+SIP  FRV   KTVFATPET +GFHPDAGASFYLS LPG+LGE+L
Sbjct: 142 VAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYL 201

Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 253
           ALTG KLNG EM+ACGLATHYS++ +LPLIEE LGKL+TDDPSVIE+ LE+Y DLVYPDK
Sbjct: 202 ALTGEKLNGVEMIACGLATHYSLTARLPLIEERLGKLITDDPSVIESSLEQYGDLVYPDK 261

Query: 254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI 313
            SV+H+I+ +DKCF  DTVEEII++LE+EAS   D W  + L+ LKEASPLSLKV+LRSI
Sbjct: 262 RSVLHKIETIDKCFCHDTVEEIINALENEASSSYDEWSATALKKLKEASPLSLKVTLRSI 321

Query: 314 REGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           REGRFQ  D+CL REYR+SL G+++ +S DF EGVRAR VD+D APK
Sbjct: 322 REGRFQPLDQCLAREYRISLVGITKWVSDDFCEGVRARFVDKDFAPK 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807438|ref|NP_001242643.1| uncharacterized protein LOC100808892 [Glycine max] gi|255634881|gb|ACU17799.1| unknown [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/368 (61%), Positives = 290/368 (78%), Gaps = 8/368 (2%)

Query: 1   MQRLKISNISRYFNDLRALSQHRTSSSVT--------DDLCNQVLVEGKANSRMAILNRP 52
           MQR K     +  + LR L  HR + S          DD   Q+LVEG+A SR AILNRP
Sbjct: 1   MQRFKALLPQQTRSSLRTLCSHRRAFSAQPNYAKHHDDDSQEQILVEGRAKSRAAILNRP 60

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
           S+LN+LN +M A+L +L+ +WE + +IGFV MKGSGRAFC+G D+V LYH +N+G  +E 
Sbjct: 61  SSLNSLNASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYHSLNEGNTDEA 120

Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
           + FF+TLYSF+YL GT+LKPHVAIL+G+TMG G+G+S+PG FRV   KTVF+ PE  IGF
Sbjct: 121 EQFFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTVFSHPEAQIGF 180

Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
           HPDAGAS+ LS LPG+LGE+LALTG KLNG EM+AC LATHYS++ +L L+EE LGKL+T
Sbjct: 181 HPDAGASYVLSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNARLSLLEERLGKLIT 240

Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 292
           D+PSV+E+ L +Y DLVYPD++SV+HRID +D+CF  +TVEEII++LE EA+  ND W  
Sbjct: 241 DEPSVVESSLAQYGDLVYPDRSSVLHRIDTIDRCFSHETVEEIIEALEKEAAESNDEWYS 300

Query: 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352
           +TLR ++EASPLSLKV+L+SIREGRF+T D+CLVREYRMSL+G+S  +S DF+EGVRARM
Sbjct: 301 TTLRRIREASPLSLKVTLQSIREGRFETLDKCLVREYRMSLRGISEHVSSDFFEGVRARM 360

Query: 353 VDRDIAPK 360
           VDRD APK
Sbjct: 361 VDRDFAPK 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507476|dbj|BAK03131.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/327 (69%), Positives = 280/327 (85%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++VLVEGKA++R ++LNRP  LNAL T MGA+LNK +++WE+ P+IGFV MKGSGRAFCA
Sbjct: 59  DEVLVEGKASARASVLNRPGHLNALTTTMGARLNKFYESWEDSPDIGFVMMKGSGRAFCA 118

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+V L   +N+GKL+E KDFFRTLYSFIY+LGT+LKPHVAIL+GVTMGGG GVSIPGT
Sbjct: 119 GGDVVGLRQLINEGKLDESKDFFRTLYSFIYVLGTYLKPHVAILDGVTMGGGGGVSIPGT 178

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FRVA  +TVFATPE  IGFHPDA ASFYLSHL GH+GE+LALTG KLNG +M+A GLATH
Sbjct: 179 FRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEYLALTGEKLNGVDMLALGLATH 238

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           YS+S+ L L++E L KLVTDDPSVI++ L +Y DLVYPDK S++HR+ ++DKCF  +TVE
Sbjct: 239 YSMSDHLDLVDERLAKLVTDDPSVIDSSLAQYGDLVYPDKTSIVHRLAVIDKCFSHETVE 298

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI+D+LESEA+ +N+ WC   L+ LKEASPL+LKVSLRSIREGR+QT DECLVREYRMS+
Sbjct: 299 EIVDALESEAAQLNEEWCTLALKRLKEASPLALKVSLRSIREGRYQTLDECLVREYRMSV 358

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
            G+S+ +  DF EGVRAR+VD+D+ PK
Sbjct: 359 NGISKPLYHDFCEGVRARLVDKDLTPK 385

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223973415|gb|ACN30895.1| unknown [Zea mays] gi|414867666|tpg|DAA46223.1| TPA: hypothetical protein ZEAMMB73_952637 [Zea mays]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/348 (66%), Positives = 286/348 (82%), Gaps = 3/348 (0%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           F  LR LS  +  ++ + D   +VLVEGK ++R A+LNRP  LNAL T MGA+LNK +++
Sbjct: 23  FGGLRPLSSLQPLNAASSD---EVLVEGKTSARAAVLNRPGYLNALTTTMGARLNKFYQS 79

Query: 73  WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKP 132
           WE++P+IGFV MKGSGRAFCAGGD+V L+  +++GKLEECKDFF+TLY FIY LGT+LKP
Sbjct: 80  WEDNPDIGFVMMKGSGRAFCAGGDVVRLHELISEGKLEECKDFFKTLYMFIYFLGTYLKP 139

Query: 133 HVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192
           HVAIL+G+TMGGG GVSIPGTFRVA  +TVFATPE  IGFHPDA ASFYLSHL GH+GE+
Sbjct: 140 HVAILDGITMGGGGGVSIPGTFRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEY 199

Query: 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           +ALTG KLNG +M+A GLATHY +S  L LI+E L KLVTDDPSVI++ L +Y D+VYPD
Sbjct: 200 VALTGEKLNGTDMIALGLATHYFMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPD 259

Query: 253 KNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRS 312
           K S++HR++++DKCF  DTVEEI+D+LESEA+  N+ WC   L+ LKEASPL+LKVSLRS
Sbjct: 260 KKSIVHRLEVIDKCFSHDTVEEIVDALESEAASSNEEWCILALKRLKEASPLALKVSLRS 319

Query: 313 IREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           IREGR+QT DECLVREYRMS+ G+S+  S +F EGVRAR+VD+D  PK
Sbjct: 320 IREGRYQTLDECLVREYRMSMNGISKQFSHEFCEGVRARLVDKDFTPK 367

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2116797	409	AT4G31810 [Arabidopsis thalian	0.952	0.880	0.602	1.4e-117
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.865	0.865	0.501	1.7e-82
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.865	0.865	0.489	6.6e-81
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.865	0.865	0.483	1.4e-78
TAIR|locus:2009180	387	AT1G06550 [Arabidopsis thalian	0.854	0.834	0.424	8.9e-70
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.907	0.888	0.399	1.9e-60
RGD|1308392	385	Hibch "3-hydroxyisobutyryl-CoA	0.902	0.885	0.386	1.5e-58
MGI|MGI:1923792	385	Hibch "3-hydroxyisobutyryl-Coe	0.910	0.893	0.384	1.9e-58
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.891	0.875	0.378	4e-58
UNIPROTKB|F1P188	385	HIBCH "3-hydroxyisobutyryl-CoA	0.891	0.875	0.378	5.1e-58

TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
 Identities = 221/367 (60%), Positives = 288/367 (78%)

Query:     1 MQRLK-ISNISRYFNDLRALSQHRTSS-----SVTD-DLCNQVLVEGKANSRMAILNRPS 53
             MQ +K +  +S     +R++S  R  S     S +D D  +QVLVEGKA SR AILN PS
Sbjct:     1 MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query:    54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
             +LNAL+  M  +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G  EE K
Sbjct:    61 SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query:   114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
              FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct:   121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query:   174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
             PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct:   181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query:   234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 293
             DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct:   241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query:   294 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV 353
             TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF EG+RAR+V
Sbjct:   301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query:   354 DRDIAPK 360
             D+D APK
Sbjct:   361 DKDFAPK 367

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 164/327 (50%), Positives = 222/327 (67%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++  V +KG GRAFCA
Sbjct:     5 SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct:    65 GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct:   125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct:   185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct:   245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query:   334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
               +   +S D  EG RA ++D+D  PK
Sbjct:   305 HVMKGDLSKDLVEGCRAILIDKDRNPK 331

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 160/327 (48%), Positives = 223/327 (68%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct:     9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct:    69 GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct:   189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query:   334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
               +   IS DF EG RA +VD+D  PK
Sbjct:   309 HVMKGEISKDFVEGCRAILVDKDKNPK 335

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 158/327 (48%), Positives = 222/327 (67%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAF A
Sbjct:     5 SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct:    65 GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct:   185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query:   334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
               +   IS DF EG RA ++D+D  PK
Sbjct:   305 HVMKGDISKDFVEGCRAVLIDKDRNPK 331

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 138/325 (42%), Positives = 209/325 (64%)

Query:    36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
             V+ E K + R+  LNRP  LN ++  +  KL +  + WE D     + +KG+GRAF AGG
Sbjct:    13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query:    96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
             D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct:    73 DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query:   156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
             V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct:   131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query:   216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
              S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct:   191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query:   276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
             I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct:   251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query:   336 VSRLISGDFYEGVRARMVDRDIAPK 360
             + + IS D YEG+RA  +D+D +PK
Sbjct:   311 LRKTISPDMYEGIRALTIDKDNSPK 335

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 143/358 (39%), Positives = 208/358 (58%)

Query:     9 ISRY--FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKL 66
             +SR+  F     +  H   S  TD    +VL+E K  + +  LNRP  LNAL  NM  ++
Sbjct:    10 MSRFNAFKRTNTILHHLRMSKHTD-AAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQI 68

Query:    67 NKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125
                 K WE DP    + +KG+G +AFCAGGDI  +     + K +    FFR  Y     
Sbjct:    69 YPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNA 127

Query:   126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185
             +G+  KP+VA+++G+TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L
Sbjct:   128 VGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRL 187

Query:   186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY 245
              G LG FLALTG +L G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y
Sbjct:   188 QGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENY 247

Query:   246 --SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEAS 302
                  +  DK+ ++   +D ++ CF  +TVEEII++L+ + S     +    L+++ + S
Sbjct:   248 HTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMS 303

Query:   303 PLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
             P SLK++LR + EG  +T  E L  EYR+S Q   R    DF+EGVRA ++D+D +PK
Sbjct:   304 PTSLKITLRQLMEGSSKTLQEVLTMEYRLS-QACMR--GHDFHEGVRAVLIDKDQSPK 358

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 138/357 (38%), Positives = 209/357 (58%)

Query:    10 SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
             SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct:    11 SRFSSIRRASVILQHLRMSKHTETA--EVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query:    68 KLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126
                K WE DP+   + +KG+G +AFCAGGDI +L      G+    +D FR  Y     +
Sbjct:    69 PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAI 127

Query:   127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186
              +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct:   128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query:   187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 245
             G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct:   188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query:   246 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
                 +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct:   248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query:   304 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
              SLK++LR + EG  +T  E L  EYR++ Q        DF+EGVRA ++D+D  PK
Sbjct:   304 TSLKITLRQLMEGSTKTLQEVLTMEYRLT-QACME--GHDFHEGVRAVLIDKDQTPK 357

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006574 "valine catabolic process" evidence=IEA

MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 138/359 (38%), Positives = 209/359 (58%)

Query:     6 ISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAK 65
             +S +S  F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  +
Sbjct:    10 LSRVSS-FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQ 66

Query:    66 LNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124
             +    K WE DP+   + +KG+G +AFCAGGDI +L     + +    +D FR  Y    
Sbjct:    67 IYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNN 125

Query:   125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184
              + +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  
Sbjct:   126 AIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPR 185

Query:   185 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK 244
             L G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE 
Sbjct:   186 LQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLES 245

Query:   245 YSDLVYPDKN-SVI--HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA 301
             Y      D++ S+I    +D ++ CF  +TVE+II++L  + S    P+    ++++ + 
Sbjct:   246 YHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKM 301

Query:   302 SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
             SP SLK++LR + EG  +T  E L+ EYR++ Q        DF+EGVRA ++D+D  PK
Sbjct:   302 SPTSLKITLRQLMEGSSKTLQEVLIMEYRIT-QACME--GHDFHEGVRAVLIDKDQTPK 357

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 134/354 (37%), Positives = 205/354 (57%)

Query:    13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
             FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct:    15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query:    73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
             WE DP    + +KG+G +AFCAGGD+ ++    + GK  +   +D+FR  Y     +GT 
Sbjct:    74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130

Query:   130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
              KP+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +
Sbjct:   131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190

Query:   190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
             G  LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y    
Sbjct:   191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250

Query:   248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSL 306
              +  +K  V+   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SL
Sbjct:   251 KIDQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSL 306

Query:   307 KVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
             K++LR +REG   +  +    EYR+S Q   R    DFYEGVRA ++D+D +P+
Sbjct:   307 KLTLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDKDQSPR 357

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 134/354 (37%), Positives = 205/354 (57%)

Query:    13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
             FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct:    15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query:    73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
             WE DP    + +KG+G +AFCAGGD+ ++    + GK  +   +D+FR  Y     +GT 
Sbjct:    74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130

Query:   130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
              KP+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +
Sbjct:   131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190

Query:   190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
             G  LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y    
Sbjct:   191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250

Query:   248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSL 306
              +  +K  V+   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SL
Sbjct:   251 KIDQEKEFVLDEHMERINSIFSANSMEEIVHKLKQDGS----PFATKQLEAINKMSPTSL 306

Query:   307 KVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
             K++LR +REG   +  +    EYR+S Q   R    DFYEGVRA ++D+D +P+
Sbjct:   307 KLTLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDKDQSPR 357

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XF59	HIBC4_ARATH	3, ., 1, ., 2, ., -	0.7087	0.8809	0.8304	yes	no
Q2HJ73	HIBCH_BOVIN	3, ., 1, ., 2, ., 4	0.3924	0.8756	0.8575	yes	no
Q28FR6	HIBCH_XENTR	3, ., 1, ., 2, ., 4	0.3798	0.8915	0.8753	yes	no
Q5ZJ60	HIBCH_CHICK	3, ., 1, ., 2, ., 4	0.375	0.8968	0.8805	yes	no
Q6NVY1	HIBCH_HUMAN	3, ., 1, ., 2, ., 4	0.4052	0.8756	0.8575	yes	no
Q8QZS1	HIBCH_MOUSE	3, ., 1, ., 2, ., 4	0.3806	0.8941	0.8779	yes	no
Q58EB4	HIBCH_DANRE	3, ., 1, ., 2, ., 4	0.3897	0.8439	0.8350	yes	no
Q5XIE6	HIBCH_RAT	3, ., 1, ., 2, ., 4	0.3837	0.9021	0.8857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.921
3rd Layer	3.1.2.4	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.40.97.1	hypothetical protein (381 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	estExt_fgenesh4_pg.C_LG_VI1023	SubName- Full=Putative uncharacterized protein; (380 aa)			•			•		•	0.907
	eugene3.00013051	hypothetical protein (348 aa)	•	•				•			0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	0.0
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	1e-177
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-130
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-111
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-107
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	3e-39
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	4e-37
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	6e-36
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	2e-22
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	5e-20
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	1e-17
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-17
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	8e-17
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	1e-16
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	1e-15
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	5e-15
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	4e-14
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	1e-13
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	3e-13
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	3e-13
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	1e-12
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-12
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-12
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	3e-12
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	4e-12
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	5e-12
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	6e-12
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	8e-12
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	4e-11
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	5e-11
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	7e-11
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	3e-10
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	7e-10
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	9e-10
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-09
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-09
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	2e-09
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	3e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	3e-09
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	6e-09
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-08
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	1e-08
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	7e-08
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	1e-07
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-07
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	4e-07
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	9e-07
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	2e-06
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	5e-06
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	6e-06
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-06
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	7e-06
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	7e-06
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-05
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	1e-05
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	3e-05
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	3e-05
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	5e-05
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	2e-04
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	4e-04
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	6e-04
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	0.001
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.001

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  541 bits (1396), Expect = 0.0
 Identities = 235/368 (63%), Positives = 297/368 (80%), Gaps = 8/368 (2%)

Query: 1   MQRLK-ISNISRYFNDLR--ALSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQR+K +  ++     +R  ++S  R+ S++      DDL +QVLVEG+A SR AILNRP
Sbjct: 1   MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRP 60

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
           S+LNAL   M A+L +L+++WE +P+IGFV MKGSGRAFC+G D+VSLYH +N+G +EEC
Sbjct: 61  SSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120

Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
           K FF  LY F+YL GT+LKP+VAI++G+TMG GAG+SIPG FRV   KTVFA PE  +GF
Sbjct: 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGF 180

Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
           HPDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE LGKL+T
Sbjct: 181 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLT 240

Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 292
           DDP+VIE  L +Y DLVYPDK+SV+H+I+ +DKCFG DTVEEII++LE+EA+   D WC 
Sbjct: 241 DDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCK 300

Query: 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM 352
             L+ +KEASPLSLKV+L+SIREGRFQT D+CL REYR+SL GVS+ +SGDF EGVRAR+
Sbjct: 301 KALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARL 360

Query: 353 VDRDIAPK 360
           VD+D APK
Sbjct: 361 VDKDFAPK 368

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  498 bits (1282), Expect = e-177
 Identities = 235/332 (70%), Positives = 278/332 (83%)

Query: 29  TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88
            +DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGSG
Sbjct: 32  PEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG 91

Query: 89  RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGV 148
           RAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG GV
Sbjct: 92  RAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGV 151

Query: 149 SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMAC 208
           SIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+AC
Sbjct: 152 SIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLAC 211

Query: 209 GLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268
           GLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF 
Sbjct: 212 GLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFS 271

Query: 269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE 328
            DTVEEIIDSLE EA    D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+RE
Sbjct: 272 HDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331

Query: 329 YRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           YRMSLQG+   +SG+F EGVRAR++D+D APK
Sbjct: 332 YRMSLQGLIGPMSGNFCEGVRARLIDKDEAPK 363

Length = 401

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  378 bits (972), Expect = e-130
 Identities = 148/325 (45%), Positives = 216/325 (66%), Gaps = 2/325 (0%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL E K   R+  LNRP  LN ++ ++ + L +  + WE D ++  + +KG+GRAF AGG
Sbjct: 13  VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+   Y    +   + C +    +Y   Y + T+ K  VA+++G+ MGGGAG+ +P  FR
Sbjct: 73  DLKMFYD--GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFR 130

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
           V   KTVFATPE  +GFH D G S+ LS LPGHLGE+LALTGA+LNG EM+ACGLATH+ 
Sbjct: 131 VVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLATHFV 190

Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
            SEKLP +E+ L  L + D S ++  +E++S  V  D++S++++   +++CF  DTVEEI
Sbjct: 191 PSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEI 250

Query: 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
           I + ESEAS   + W   TL+ L+ +SP  LK++LRSIREGR Q+  ECL +E+R+++  
Sbjct: 251 IKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNI 310

Query: 336 VSRLISGDFYEGVRARMVDRDIAPK 360
           +   +S D YEG+RA ++D+D APK
Sbjct: 311 LRSTVSDDVYEGIRALVIDKDNAPK 335

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  328 bits (843), Expect = e-111
 Identities = 162/327 (49%), Positives = 222/327 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+ ++   + QG      +FF   Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L ++ ++DP+     L+ Y+        S  HR+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVE 248

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE EA+   D W  +T++ LK+ASP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 334 QGVSRLISGDFYEGVRARMVDRDIAPK 360
             +   IS DF EG RA +VD+D  PK
Sbjct: 309 HVMKGEISKDFVEGCRAILVDKDKNPK 335

Length = 381

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  317 bits (815), Expect = e-107
 Identities = 124/314 (39%), Positives = 182/314 (57%), Gaps = 11/314 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNRP ALNAL+  M   ++    AWE+D  +  V ++G+G R FCAGGDI +LY     G
Sbjct: 18  LNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAG 77

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                  FFR  Y    L+  + KP++A+++G+ MGGG G+S  G+ R+   +T  A PE
Sbjct: 78  DPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPE 137

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
           T IGF PD G +++LS  PG LG +LALTGA+++ A+ +  GLA H+  S  LP + + L
Sbjct: 138 TGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAGLADHFVPSADLPALLDAL 197

Query: 228 GKLVTDDPS-VIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLI 286
             L  D  + V++A L  ++       + +  +   +D+CF  DTVE+II +LE++    
Sbjct: 198 ISLRWDSGADVVDAALAAFA--TPAPASELAAQRAWIDECFAGDTVEDIIAALEADG--- 252

Query: 287 NDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
              +   T   L+  SP SLKV+L  +R  R  T +ECL RE R++L  +    S DF E
Sbjct: 253 -GEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVE 308

Query: 347 GVRARMVDRDIAPK 360
           GVRA ++D+D  PK
Sbjct: 309 GVRAVLIDKDRNPK 322

Length = 342

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  138 bits (349), Expect = 3e-39
 Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NAL+  M  +L       E DP++  V + G+G+AFCAG D+  L    + G 
Sbjct: 14  LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG- 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE + F R L   +  L    KP +A +NG  +GGG  +++    R+A     F  PE 
Sbjct: 73  -EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV 131

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            +G  P  G +  L  L G      L LTG +++  E +  GL       E+L
Sbjct: 132 KLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  134 bits (339), Expect = 4e-37
 Identities = 76/320 (23%), Positives = 111/320 (34%), Gaps = 78/320 (24%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE +    +  LNRP  LNALN  M  +L +     E DP++  V + G+G+AF AG 
Sbjct: 7   ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+         G   E  +  +     +  L    KP +A +NG  +GGG  +++    R
Sbjct: 67  DL-KELLSPEDGNAAE--NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIR 123

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G +  L  L G      L LTG  ++ AE          
Sbjct: 124 IAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEA--------- 174

Query: 215 SVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 274
                                                        + +VD+         
Sbjct: 175 -------------------------------------------LELGLVDEVV------P 185

Query: 275 IIDSLESEASLINDPWCGSTLRLLKE--ASPLSLKVSLRSIREGRFQTFDECLVREYRMS 332
             + L   A           L L +   A PL+L  + R +R        E L  E    
Sbjct: 186 DAEELLERA-----------LELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAF 234

Query: 333 LQGVSRLISGDFYEGVRARM 352
            +      S DF EGVRA +
Sbjct: 235 AR---LFSSEDFREGVRAFL 251

Length = 257

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score =  126 bits (320), Expect = 6e-36
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 7/103 (6%)

Query: 258 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 317
              + +D+CF  DTVEEI+ +LE++       W   TL+ L+  SPLSLKV+L  +R GR
Sbjct: 3   EHREAIDRCFSGDTVEEILAALEADG----SEWAAKTLKTLRSGSPLSLKVTLEQLRRGR 58

Query: 318 FQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
             +  ECL  EYR++++ ++    GDF EGVRA ++D+D  PK
Sbjct: 59  GLSLAECLRMEYRLAVRCMAH---GDFAEGVRALLIDKDRNPK 98

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 94.3 bits (235), Expect = 2e-22
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP A+NAL+  +  +L +  +  E DP++  + + G   AF AG DI  +        
Sbjct: 13  LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA----EP 68

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           L +   F          L    KP +A +NG  +GGG  +++   +R+A     F  PE 
Sbjct: 69  LAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGL 210
            +G  P AG +  L  + G      + LTG ++   E +  GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 88.0 bits (219), Expect = 5e-20
 Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NRP   NAL   M   L    +A   DP +  V + G+GRAF AGGDI     F     
Sbjct: 20  INRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKD---FPKAPP 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +  D    +  F+  +    KP VA +NG  +G G  +++      A     F+ P  
Sbjct: 77  --KPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134

Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 213
            +G  PDAG S  L  L G     E + L G  L+  E +  GL   
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAE-MLLLGEPLSAEEALRIGLVNR 180

Length = 259

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 27/223 (12%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
             V++E + +  +  +NRP ALNALN+    +L+ +    END N+  V + G+G +AF 
Sbjct: 4   KNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFV 63

Query: 93  AGGDIVSLYHFMNQGKLEECKDF-------FRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
           AG DI      M     EE + F       FR L      L    KP +A +NG  +GGG
Sbjct: 64  AGADISE----MKDLNEEEGRKFGLLGNKVFRKL----ENLD---KPVIAAINGFALGGG 112

Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGA 203
             +S+    R+A  K  F  PE  +G  P  G +  L+ +  PG   E L  TG  +N  
Sbjct: 113 CELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKE-LIYTGDMINAE 171

Query: 204 EMMACGLATHYSVSEKLPLIEEELG---KLVTDDPSVIEACLE 243
           E +  GL     V E   L+EE      K+  + P  ++ C +
Sbjct: 172 EALRIGLVN--KVVEPEKLMEEAKALANKIAANAPIAVKLCKD 212

Length = 260

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + VE +    +  ++RP  LNALN  M  +     K    DP I  V + G GRAFC G 
Sbjct: 2   IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+                D   T Y  I  +    K +++ +NGVT G   G+++   F+
Sbjct: 62  DLSEF-----APDFAI--DLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFK 114

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
            A     F T    +G   D G +++L  L G     + + G +    E    GL
Sbjct: 115 FASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERWGL 169

Length = 248

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 51/230 (22%)

Query: 29  TDDLCNQVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
                + VL+E  A+  +A+  LNRP A NALN  +  +L + F     DP+I  + + G
Sbjct: 2   MSTATDVVLLERPADG-VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG 60

Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL---------KPHVAIL 137
             + F AG DI     F   G +E            +YL  T           KP +A +
Sbjct: 61  GEKVFAAGADIKE---FATAGAIE------------MYLRHTERYWEAIAQCPKPVIAAV 105

Query: 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----L 193
           NG  +GGG  +++     VA     F  PE  +G  P AG +     L   +G+F    +
Sbjct: 106 NGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGT---QRLVRAVGKFKAMRM 162

Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLE 243
           ALTG  +   E +A GL     VSE            V +D   +   LE
Sbjct: 163 ALTGCMVPAPEALAIGL-----VSE------------VVEDEQTLPRALE 195

Length = 261

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 11/214 (5%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           VL+E +    +  LNRP  LNALN  +  +L     A E D ++  V + G+G RAF AG
Sbjct: 5   VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            DI      +  G     +DF R   +    L    KP +A +NG+  GGG  ++     
Sbjct: 65  ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACG 209
            +A  + +FA PE  +G  P  G +     LP   G     E L LTG   +    +  G
Sbjct: 125 AIASERALFAKPEIRLGMPPTFGGT---QRLPRLAGRKRALELL-LTGDAFSAERALEIG 180

Query: 210 LATH-YSVSEKLPLIEEELGKLVTDDPSVIEACL 242
           L        E LP       +++   P  + A L
Sbjct: 181 LVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 25/202 (12%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE +    +  LNRP ALNALN  +  +L     A++ D  IG + + GS +AF AG 
Sbjct: 6   ILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGA 65

Query: 96  DI--VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           DI  ++   FM+  K     D+          +    KP +A + G  +GGG  +++   
Sbjct: 66  DIKEMADLSFMDVYK----GDYITNWEK----VARIRKPVIAAVAGYALGGGCELAMMCD 117

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACG 209
             +A     F  PE  +G  P  G S     L   +G+     L LTG  ++ AE    G
Sbjct: 118 IIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAEAERAG 174

Query: 210 LATHYSVSEKLP---LIEEELG 228
           L     VS  +P   L++E L 
Sbjct: 175 L-----VSRVVPADKLLDEALA 191

Length = 257

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 4/196 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA N  + A+L   F+A + D ++  V + G+G+AFCAG D+  +   M    
Sbjct: 19  LNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKK-MAGYS 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +E +   R L   +  +    KP +A ++G    GG G+       VA    VF   E 
Sbjct: 78  DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV 137

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVS-EKL-PLIEEE 226
            +G  P   + + +  +         LT  + + AE +  GL  H  V  E L   ++E 
Sbjct: 138 RLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLV-HEVVPAEALDAKVDEL 196

Query: 227 LGKLVTDDPSVIEACL 242
           L  LV + P  + A  
Sbjct: 197 LAALVANSPQAVRAGK 212

Length = 262

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNRP A NAL+  +  +L  +      + N+  V + G+G +AFCAG D+      MN+ 
Sbjct: 19  LNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAG-MNE- 76

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E+ +     + + + ++    +P +A +NG+ +GGG  +++   FR+A         E
Sbjct: 77  --EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE 134

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225
           T +   P AG +  L  L   G   E L  TG +++  E    GL      +  L     
Sbjct: 135 TTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI 193

Query: 226 ELGKLVTDD 234
           E+ + +  +
Sbjct: 194 EIAEKIASN 202

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
             VE K +  +  LNRP  +NAL+ +   +L ++F  +  DP      + G+G +AF AG
Sbjct: 6   STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            D   L      GK    +  F  L S   L     KP +A +NGV MGGG  +++    
Sbjct: 66  ND---LKEQAAGGKRGWPESGFGGLTSRFDL----DKPIIAAVNGVAMGGGFELALACDL 118

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     FA PE  +G    AG       LP  +G   A    LTG ++   E +  G 
Sbjct: 119 IVAAENATFALPEPRVGLAALAGGLH---RLPRQIGLKRAMGMILTGRRVTAREGLELGF 175

Length = 259

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 57/192 (29%), Positives = 78/192 (40%), Gaps = 24/192 (12%)

Query: 35  QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
            VL E  A+S +A+  LNRP  LNA    M A++       E DP +  + + G+GR FC
Sbjct: 6   AVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFC 64

Query: 93  AGGDIVSL----------YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
           AG D+  L             +         D ++T Y F+  L    KP +A +NG   
Sbjct: 65  AGADMGELQTIDPSDGRRDTDVRPFVGNRRPD-YQTRYHFLTALR---KPVIAAINGACA 120

Query: 143 GGGAGVSIPGTFRVACGKTVFATPET---LIGFHPDAGASFYLSHLPGHLGEF-LALTGA 198
           G G   ++    R A     F T      LI  H   G S+ L  L GH     L L+  
Sbjct: 121 GIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH---GISWILPRLVGHANALDLLLSAR 177

Query: 199 KLNGAEMMACGL 210
                E +  GL
Sbjct: 178 TFYAEEALRLGL 189

Length = 272

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +N P   NA+   M A+L     A E DP++  + + G+G+AFCAG D+ +L      G+
Sbjct: 18  VNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTAL--GAAPGR 75

Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E  D  R +Y  F+ +    L P +A +NG  +G G  +++    R+A  K +F    
Sbjct: 76  PAE--DGLRRIYDGFLAVASCPL-PTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARF 132

Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLAT 212
             +G HP  GA++ L    G  +     L G + +    +  GLA 
Sbjct: 133 QKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Length = 249

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE     R   LNRP A NAL+  +   L       + D ++  V + G+  AFCAG 
Sbjct: 6   LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65

Query: 96  DIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           D+  L      +  Q  L                     KP +  +NG  + GG  +++ 
Sbjct: 66  DLKELGGDGSAYGAQDALPNP----------SPAWPAMRKPVIGAINGAAVTGGLELALA 115

Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 210
               +A  +  FA     +G  P  G S  L    G      ++LTG  L+ A+ +  GL
Sbjct: 116 CDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGL 175

Query: 211 ATH-YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL 248
            T      E LP        +  ++P+ + A    Y D 
Sbjct: 176 VTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDG 214

Length = 258

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRPS  NAL+ +   +  K   + + +PN+  + + G+G  FC+G D+ +L     Q 
Sbjct: 22  NLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81

Query: 108 KL-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
                    E  +   + L   I  +    KP +A ++G  +GGG  +      R     
Sbjct: 82  SSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED 141

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 212
             F+  E  +    D G    L  LP  +G      LALTG + +G+E    GL +
Sbjct: 142 AFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194

Length = 275

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 5/164 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+    M  +L +  +  E D +   + + G+GR FCAG D+         G 
Sbjct: 14  LNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQDLSERN--PTPGG 70

Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             +      T Y+  +  L     P V  +NGV  G GA +++     +A     F    
Sbjct: 71  APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAF 130

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGL 210
             IG  PD+G ++ L  L G      LA+ G KL+     + GL
Sbjct: 131 AKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 7/170 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQG 107
           L+RP A NA+   M   L   F+  + D +   V ++ S    FCAG D+      M+  
Sbjct: 10  LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL-KERRKMS-- 66

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
              E + F  +L S    L     P +A++ G  +GGG  +++    R+   + VF  PE
Sbjct: 67  -PSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPE 125

Query: 168 TLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSV 216
           T +   P AG +  L  L G    + L  TG ++   E  + GL  +Y V
Sbjct: 126 TGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV-NYCV 174

Length = 251

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 11/215 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+   M A + K  KA + D  I      G+   F AG D+         G 
Sbjct: 21  FNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGT 80

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                 F   +  F+  L    KP V+ ++G+ +G G  + +      A  +++F TP  
Sbjct: 81  -----SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV 135

Query: 169 LIGFHPDAGASFYLSHLPGHLGEF--LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
            +   P+AG+S     L GH   F  LAL G   +       GL   + + ++   +E E
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSAEAAQEAGLI--WKIVDE-EAVEAE 191

Query: 227 LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 261
             K   +  +     L+   DL+   +  ++ RID
Sbjct: 192 TLKAAEELAAKPPQALQIARDLMRGPREDILARID 226

Length = 251

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 10/257 (3%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
           ++ S       ++L E          N P+  NA++ +M   L +   A E+D  I  V 
Sbjct: 1   STMSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVV 60

Query: 84  MKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVT 141
           + G+G +AF +G DI     F       E    +          L  + KP +A + G  
Sbjct: 61  LTGAGEKAFVSGADIS---QFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYC 117

Query: 142 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAK 199
           +GGG G+++    R+A   + F  P   +G          L  L  P    +    T  +
Sbjct: 118 IGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTARR 176

Query: 200 LNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH 258
            + AE +  GL    + ++ L   + +    +  + P  + A     ++L+  +    + 
Sbjct: 177 FDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMA 236

Query: 259 RID-IVDKCFGLDTVEE 274
               +V  CF  +   E
Sbjct: 237 ACQALVAACFDSEDYRE 253

Length = 269

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 5/165 (3%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           +LNRP ALNAL+  M  +L +  K    + +   V ++G+GR F AGGDI  +   ++  
Sbjct: 20  MLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMM---LSSN 75

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
              +      T+   +  L T  K  ++ ++G   G G  +++   + +A      A   
Sbjct: 76  DESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNF 135

Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 211
             IG  PD G  F+L    G +  + +   G KL+  E +  GL 
Sbjct: 136 IGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLI 180

Length = 260

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P A NAL+ +M A   +     E DP+I  V + G+G  FCAGG++  L    N+ K
Sbjct: 18  LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLE--NRAK 75

Query: 109 -LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                      L+ +I  +    KP +A + G   G G  +++     VA     F    
Sbjct: 76  PPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAY 135

Query: 168 TLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 210
             +G  PD G S++L+  LP  L   L L G  ++   + A G+
Sbjct: 136 VKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179

Length = 260

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 7/175 (4%)

Query: 45  RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM 104
            +  LNRP A NALN  +  +L    +A   D +IG   + G+ R F AG D+      M
Sbjct: 13  LLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNE----M 68

Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
            +  L    +  R        L    KP +A +NG  +G G  +++     +A     F 
Sbjct: 69  AEKDLAATLNDPRPQL--WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFG 126

Query: 165 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSE 218
            PE  +G  P AG +  L    G  L   + LTG  +   +    GL +     E
Sbjct: 127 LPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181

Length = 255

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 62.2 bits (152), Expect = 5e-11
 Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 38/190 (20%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  +NAL+  M  +L    K  + D  I  V + G G AFCAG D+ S     +   
Sbjct: 18  LNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKS---VASSPG 74

Query: 109 LEECKDFFRTLYSFIYLLGTHLK------------------PHVAILNGVTMGGGAGVSI 150
                         + LL   L                   P +A L GV  GGG  +++
Sbjct: 75  NA------------VKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIAL 122

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMAC 208
               R+A   T  +  E   G  PD   +  L  L       E L  T    +  E +  
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALEL 181

Query: 209 GLATHYSVSE 218
           GL TH  VS+
Sbjct: 182 GLVTH--VSD 189

Length = 262

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 31/161 (19%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS--------- 99
           LNRP  LNA    M  +L + F A + D  +  V + G+GRAFCAG D+ +         
Sbjct: 19  LNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDA 78

Query: 100 ---LYHFMNQGKLEECKDFFR------TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
                    + + +   D  R      TL  F       LKP +A +NG  +G GA +++
Sbjct: 79  PRTPVEADEEDRADPSDDGVRDGGGRVTLRIF-----DSLKPVIAAVNGPAVGVGATMTL 133

Query: 151 PGTFRVACGKT----VFATPETLIGFHPDAGASFYLSHLPG 187
               R+A        VF       G  P+A +S++L  L G
Sbjct: 134 AMDIRLASTAARFGFVFGR----RGIVPEAASSWFLPRLVG 170

Length = 296

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
           LNRP   NA+N    ++L ++F+  + DP +  V + GSG+ F  G D+ ++     Q  
Sbjct: 21  LNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80

Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                    + +     L + I  +    KP +A + G  +GGG  +      R A    
Sbjct: 81  KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA 140

Query: 162 VFATPETLIGFHPDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 210
            F+  E  +G   D G+   L  LP     GHL E LALTG  ++ AE    GL
Sbjct: 141 KFSVREVDLGMVADVGS---LQRLPRIIGDGHLRE-LALTGRDIDAAEAEKIGL 190

Length = 272

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 31 DLCNQVLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR 89
             N +LV    N    I +NRP ALNAL   M  +L   FK  + D ++  + + GSGR
Sbjct: 6  VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGR 65

Query: 90 AFCAGGDI 97
          AFC+G D+
Sbjct: 66 AFCSGVDL 73

Length = 265

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW---ENDPNIGFVSMKGSGRAFCA 93
           LVE + ++ +  +NRP A NAL+T M   L  +  AW   +NDP+I    + G+G AFCA
Sbjct: 8   LVEQRGHTLIVTMNRPEARNALSTEM---LRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH--LKPHVAILNGVTMGGGAGVSIP 151
           G D+ +      +   +  KD          LL      KP +A + G  + GG  + + 
Sbjct: 65  GMDLKAA---TKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEI-LQ 120

Query: 152 GT-FRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 209
           GT  RVA     F   E      P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 121 GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIG 180

Query: 210 LATH 213
           L  H
Sbjct: 181 LIGH 184

Length = 263

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+    M  +L +     E D     + + G+GR FCAG D+         G 
Sbjct: 19  LNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADR-DVTPGGA 76

Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +   T Y+  +  L     P +A +NGV  G GA +++     +A     F    
Sbjct: 77  MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAF 136

Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
             IG  PD+G +++L  L G    LG  LAL G KL+  +    GL
Sbjct: 137 VKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQAEQWGL 180

Length = 262

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 43  NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH 102
           NS++  L++      L       +N+L   W N+     V + G   +F AG DI  +  
Sbjct: 32  NSKVNTLSK-----ELFAEFKEVMNEL---WTNEAIKSAVLISGKPGSFVAGADIQMI-- 81

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG--K 160
                  +E     +        +    KP VA ++G  +GGG  +++   +R+A    K
Sbjct: 82  -AACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRK 140

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 201
           T+   PE ++G  P AG +  L  L G      + LTG K+ 
Sbjct: 141 TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 26/206 (12%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSL------ 100
            L+RP A NA++      + ++F  + +DP +    + G+G + F AG D+ +       
Sbjct: 17  TLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP 75

Query: 101 ---YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
              +       L E  D                KP +A +NG   GGG  +++   F V 
Sbjct: 76  DADFGPGGFAGLTEIFDLD--------------KPVIAAVNGYAFGGGFELALAADFIVC 121

Query: 158 CGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACGLATHYSV 216
                FA PE  +G  PD+G    L   LP  +   + +TG +++  E +  G+      
Sbjct: 122 ADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181

Query: 217 SEKLPLIEEELGKLVTDDPSVIEACL 242
             +L     EL + + +   +  A L
Sbjct: 182 QAELMDRARELAQQLVNSAPLAIAAL 207

Length = 261

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P A NAL++ +  +L++L    E D N+  V + G GR F AG DI     F +  +
Sbjct: 17  LNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADI---KEFTSVTE 72

Query: 109 LEECKDFFRTLYSFIYLLGTHL--------KPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
            E+         + +  LG           KP +A ++G  +GGG  +++    R A   
Sbjct: 73  AEQ--------ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES 124

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSV 216
                PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL      
Sbjct: 125 AKLGLPELNLGLIPGFAGT---QRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNG-VF 180

Query: 217 SEKLPLIEEEL---GKLVTDDPSVIEACLE 243
            E+  L+++      K+    P+   A LE
Sbjct: 181 PEE-TLLDDAKKLAKKIAGKSPATTRAVLE 209

Length = 257

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   N  N  M  ++ +  +  E DP++ F+ +  +G+ F  GGD+V +   +++  
Sbjct: 17  LNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDD 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           ++        +    + +    KP +  ++G   G  A +++   F +A  KT F     
Sbjct: 77  VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136

Query: 169 LIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
            +G  PDAG  F L+   G +    LA+TG  L   + +  G     + SEKL    E+L
Sbjct: 137 GVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL 196

Query: 228 GK 229
            K
Sbjct: 197 LK 198

Length = 255

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 70/317 (22%), Positives = 111/317 (35%), Gaps = 102/317 (32%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
             NRP+A NA+   M   L ++ +A   DP+I  V ++G+G +AF AG DI     F   
Sbjct: 22  TFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF--- 78

Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
              E+   + R +   +  L     P +A + G  +GGGA ++     R+       ATP
Sbjct: 79  STAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRI-------ATP 131

Query: 167 ETLIGFHPDA-------GASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLATHYS 215
               GF P A         S   + L   LG    + +  T   L   E +A GL     
Sbjct: 132 SARFGF-PIARTLGNCLSMSNL-ARLVALLGAARVKDMLFTARLLEAEEALAAGL----- 184

Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
                      + ++V D    ++A                                + +
Sbjct: 185 -----------VNEVVEDA--ALDA------------------------------RADAL 201

Query: 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC--LVREYRMSL 333
            + L + A                   PL+L+ +  ++R  R +   +   L+R   M  
Sbjct: 202 AELLAAHA-------------------PLTLRATKEALRRLRREGLPDGDDLIRMCYM-- 240

Query: 334 QGVSRLISGDFYEGVRA 350
                  S DF EGV A
Sbjct: 241 -------SEDFREGVEA 250

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 16/201 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
           L+R    NA N  M  +L       ++D ++ F+ ++G GR F AG D+     +M Q  
Sbjct: 21  LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLA----WMQQSA 76

Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  L++     R L   +Y L     P +A++ G   GG  G+       +     
Sbjct: 77  DLDYNTNLDDA----RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA 132

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL-ATHYSVSEKL 220
            F   E  IG  P   + F +  +        ALT  + +G      GL A  Y  +E  
Sbjct: 133 QFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELE 192

Query: 221 PLIEEELGKLVTDDPSVIEAC 241
             +E  +  L+ + P  + A 
Sbjct: 193 AQVEAWIANLLLNSPQALRAS 213

Length = 265

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA++  +  ++  +  A E D + G + + G+G A+ AG D+   +   +   
Sbjct: 23  LNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
               +   R  Y +   L  + KP +A++NG   GGG    +     +A  +  F   E 
Sbjct: 83  EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI 142

Query: 169 LIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATHYSVSEKLPLIE--- 224
             G  P  G S  ++   GH    +  +TG    G +    GL     V+E +PL +   
Sbjct: 143 NWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGL-----VNESVPLAQLRA 197

Query: 225 ---EELGKLVTDDPSVIEA 240
              E   KL+  +P V+ A
Sbjct: 198 RTRELAAKLLEKNPVVLRA 216

Length = 275

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA 90
            + +Q+ +E   +  +  L+ P  +NAL+  +  +L  +F      P++  V + G+G+ 
Sbjct: 1   MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKV 59

Query: 91  FCAGGDIVSLYHFMNQGKLEECKDFF---RTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
           FCAG D+           ++   D     R      + +    KP +A +NG  +G G G
Sbjct: 60  FCAGADLKG-----RPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLG 114

Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
           +       VA    VF  PE  +G     G    +      L   + LTG ++  AE+  
Sbjct: 115 LVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYR 172

Query: 208 CGL 210
            G+
Sbjct: 173 RGV 175

Length = 257

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 34/205 (16%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH-----F 103
           LNRP  LN +   M  ++       E D +I  + ++G+GRAF  G D    +       
Sbjct: 20  LNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAM 79

Query: 104 MNQGKLEECKDFFRT-------LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV 156
           M  G+ +  KDF             F+ +     KP +A ++G  +GG +  ++      
Sbjct: 80  MTDGRWDPGKDFAMVTARETGPTQKFMAIWRAS-KPVIAQVHGWCVGGASDYAL------ 132

Query: 157 ACGKTVFATPETLIGFHPDA---GA---SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
            C   V A+ + +IG  P +   GA     +L  L     ++ +LTG  L G +     L
Sbjct: 133 -CADIVIASDDAVIG-TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAEL 190

Query: 211 ATHYSVSEKLPL--IEEELGKLVTD 233
                ++E +P   +E  + ++ T+
Sbjct: 191 -----INEAVPFERLEARVAEVATE 210

Length = 298

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 49  LNRPSALNALNTN-MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLY--HFMN 105
           +NRP   NAL+ N     L     A   D ++  V + G+G AF +GG++  +       
Sbjct: 18  MNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAF 77

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLK-PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
            G   + +  +R     I L   +L+ P +A +NG  +G G  ++     R+A     FA
Sbjct: 78  GGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFA 137

Query: 165 TPETLIGFHP-DAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACGLATHYSVSE 218
                +G  P D GA      LP  +G     E +A TG  ++ A  +  GL     VS 
Sbjct: 138 ESFVKLGLIPGDGGAWL----LPRIIGMARAAE-MAFTGDAIDAATALEWGL-----VSR 187

Query: 219 KLP 221
            +P
Sbjct: 188 VVP 190

Length = 266

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 56/198 (28%), Positives = 77/198 (38%), Gaps = 26/198 (13%)

Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSM 84
            S V+ +L   V   G        LNRP+  NALN  + A L   F        +  V +
Sbjct: 1   PSLVSYELDGGVATIG--------LNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVL 50

Query: 85  KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL----YSFIYLLGTHLKPHVAILNGV 140
            G G  FCAG D+  L        +   + + R      Y  +        P +A L+G 
Sbjct: 51  HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGA 102

Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG--HLGEFLALTGA 198
            +GGG  ++     RVA   T FA PE   G     G S  +  L G   + + + LTG 
Sbjct: 103 VVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD-MMLTGR 161

Query: 199 KLNGAEMMACGLATHYSV 216
             +  E    GLA  Y V
Sbjct: 162 VYDAQEGERLGLA-QYLV 178

Length = 255

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
           LNRP   NAL+  M A+L    +    D  +  V + G+G++FCAGGD+  +   M    
Sbjct: 20  LNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR 79

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
             ++EE     R L   +  L    KP +  + G   GGG G
Sbjct: 80  ATRIEEA----RRLAMMLKALNDLPKPLIGRIQGQAFGGGVG 117

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VLVE +    +  +NRP A NA+N  +   L       + DP++    + G+G  FCAG 
Sbjct: 5   VLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGM 64

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D   L  F  +G+        R             KP +A + G  + GG  +++     
Sbjct: 65  D---LKAFA-RGERPSIPG--RGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLI 116

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGLA 211
           VA     F  PE   G     G    L   +P H+   LALTG  L        GL 
Sbjct: 117 VAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLV 173

Length = 254

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
          LNRP A NAL+  M A L     A   DP++  V +  +G+AFCAG D
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHD 73

Length = 266

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 4/165 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   N L     A+L  LF+      ++  V + G+G  FC+GGD+  +   + +  
Sbjct: 32  LNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMD 91

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           + E   F R     +  +    +P +A ++GV  G GA +++    R+       A   T
Sbjct: 92  MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT 151

Query: 169 LIGFH-PDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
            +G    D GA   L  +   G   E L  TG  ++  E    G 
Sbjct: 152 RVGLAGADMGACALLPRIIGQGRASELL-YTGRSMSAEEGERWGF 195

Length = 277

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGD--IVSLYHFM 104
            +NRP   NA       ++ +       DP+IG V + G+G +AFC+GGD  +   Y ++
Sbjct: 17  TINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYI 76

Query: 105 NQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
           +   +      D  R + +         KP +A++NG  +GGG
Sbjct: 77  DDSGVHRLNVLDVQRQIRTCP-------KPVIAMVNGYAIGGG 112

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN-IGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           L+ P  +NA++ +M   L +   A E+    +  + + G+GR FC G ++        QG
Sbjct: 19  LDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANL--------QG 70

Query: 108 KLEECKDF---------FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
           +    ++            T Y  F+  L     P V  +NG   G G   ++ G   + 
Sbjct: 71  RGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILC 130

Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
                F      IG  PD G+++ L  L G      L+L G KL     +  GL
Sbjct: 131 ARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184

Length = 266

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGG 95
           +V G  N+ + IL+ P   N+  T+M   +   F+   +D ++  V     G +AFC GG
Sbjct: 32  VVPGLYNAWI-ILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGG 90

Query: 96  DIVSL--YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           +      Y+  N  +  +    F  + S I  LG   KP +  +NG+ +GGG  + +   
Sbjct: 91  NTKEYAEYYAGNPQEYRQYMRLFNDMVSAI--LGCD-KPVICRVNGMRIGGGQEIGMAAD 147

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYL 182
           F +A     F       G  P  GA+ +L
Sbjct: 148 FTIAQDLANFGQAGPKHGSAPIGGATDFL 176

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI---VSLYHFM 104
             + P ++N  +    A L++   A +   ++  V +     AF  G DI   + L+  +
Sbjct: 21  KFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLF-AL 79

Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
              +L +   F  ++++ +  L     P VA +NG+ +GGG    +   FR+A       
Sbjct: 80  PDAELIQWLLFANSIFNKLEDLPV---PTVAAINGIALGGGCECVLATDFRIADDTAKIG 136

Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204
            PET +G  P  G +  L  + G       +   K N AE
Sbjct: 137 LPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 37/212 (17%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            ++ P  +NAL +     L     A   DP+   V ++  GR F AG DI  L       
Sbjct: 16  TVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFT 74

Query: 108 KL----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
            L      C   FR +Y           P +A ++G  +GGG G+       VA     F
Sbjct: 75  ALIDANRGCFAAFRAVYE-------CAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATF 127

Query: 164 ATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
             PE       D GA    +HL    P HL   L  T A +  AE+   G     SV E 
Sbjct: 128 GLPEV------DRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFG-----SVEEV 176

Query: 220 LPLIEEEL--------GKLVTDDPSVIEACLE 243
           +P   ++L         K+   D  VI A  E
Sbjct: 177 VP--RDQLDEAALEVARKIAAKDTRVIRAAKE 206

Length = 249

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 47/197 (23%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRP   NA+  +   +L    +  + DP +  + + G+G+ FCAG D+ +     + G
Sbjct: 24  TLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83

Query: 108 KLEECKDFFRTLYS----------------------FIYLLGTHLKPHVAILNGVTMGGG 145
                    R   +                      F+ L   H KP VA ++G  + GG
Sbjct: 84  GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAH-KPTVAKVHGYCVAGG 142

Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFH-------PDAGASFYLSHLPGHLG----EFLA 194
             +++           V A  +  IG+        P  G   Y       LG    + L 
Sbjct: 143 TDIAL-------HCDQVIAADDAKIGYPPTRVWGVPATGMWAY------RLGPQRAKRLL 189

Query: 195 LTGAKLNGAEMMACGLA 211
            TG  + GA+    GLA
Sbjct: 190 FTGDCITGAQAAEWGLA 206

Length = 302

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 48/167 (28%), Positives = 65/167 (38%), Gaps = 7/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P   NAL+  + A+L+   +A   DP +  V +  +G  FCAG D   L      G 
Sbjct: 21  LDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGAD---LSEAGGGGG 77

Query: 109 LEECKDFFRTLYSFIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
                   R       LL   +   KP +A ++G    GG G+       VA  ++ FA 
Sbjct: 78  DPYDAAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFAL 136

Query: 166 PETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
            E  IG  P   +   L  L         LTG K   AE    GL T
Sbjct: 137 TEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183

Length = 260

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
          +LN P ALNA +  M  +L  +++  + DP++  V ++G G+AF AGGD
Sbjct: 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGD 74

Length = 268

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 45/188 (23%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS------LYH 102
           LNRP A NA N  M  +L+  F+  E D  +  + + G+G+ F AG D+ S         
Sbjct: 19  LNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDP 78

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHL------------KPHVAILNGVTMGGGAGVSI 150
             +Q          +      Y     +            KP +A + G  + GG  ++ 
Sbjct: 79  GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAW 138

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEM 205
                VA     F+ P   +G         Y +H P  LG     E L  TG +L   E 
Sbjct: 139 VCDLIVASDDAFFSDPVVRMG----IPGVEYFAH-PWELGPRKAKELL-FTGDRLTADEA 192

Query: 206 MACGLATH 213
              G+   
Sbjct: 193 HRLGMVNR 200

Length = 288

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  +N++  ++   L +       D ++  V + G+GR F +G D  S     +   
Sbjct: 25  LNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84

Query: 109 LEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           L       R+   L   I  L    +P +A +NG  +GGG  +++    RVA     F
Sbjct: 85  LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYF 142

Length = 276

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
            V VE        ILNRP   NA++    A L   F+A++ D       + G+G  FCA
Sbjct: 3  MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCA 62

Query: 94 GGD 96
          G D
Sbjct: 63 GAD 65

Length = 254

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
           ++NRP+ +NA       +L    K    D  IG + + G+G +AFC GGD  S +     
Sbjct: 16  MINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QSTHDGGYD 74

Query: 107 GK------LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
           G+      +EE     R +           KP +A + G  +GGG  +       +A  K
Sbjct: 75  GRGTIGLPMEELHSAIRDV----------PKPVIARVQGYAIGGGNVLVTICDLTIASEK 124

Query: 161 TVF 163
             F
Sbjct: 125 AQF 127

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
             TD +  + + EG A  ++ I NRP   NA       +L + F    +D ++G + + G
Sbjct: 63  EFTDIIYEKAVGEGIA--KITI-NRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTG 119

Query: 87  SG-RAFCAGGD 96
            G +AFC+GGD
Sbjct: 120 KGTKAFCSGGD 130

Length = 327

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.79
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.78
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.73
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.6
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.51
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.49
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.45
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.43
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.37
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.35
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.24
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.19
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.78
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.64
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.59
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.53
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.44
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.41
PRK10949	618	protease 4; Provisional	98.4
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.37
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.32
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.31
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.29
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.24
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.24
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.23
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.22
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.21
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.17
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.16
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.03
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.99
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.97
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.96
PRK11778	330	putative inner membrane peptidase; Provisional	97.93
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.87
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.73
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.7
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.6
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.59
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.25
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.25
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.24
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.22
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.21
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.19
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.99
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.67
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.54
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.52
PRK10949	618	protease 4; Provisional	96.44
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	96.37
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	94.53
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	94.05
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.69
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	92.91
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	91.98
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	89.5

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2e-63  Score=487.32  Aligned_cols=333  Identities=68%  Similarity=1.149  Sum_probs=299.6

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ..+.|.++..+++++||||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+..+.
T Consensus        40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~  119 (407)
T PLN02851         40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE  119 (407)
T ss_pred             CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999865332222344


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHH
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE  191 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~  191 (378)
                      ...++...+.+.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+.
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~  199 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE  199 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence            55677778888899999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||++++|+||+++||+++++|+++++.+.+.+.++...++..+...+++|.....++......+...|++||+.++
T Consensus       200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~s  279 (407)
T PLN02851        200 YLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDT  279 (407)
T ss_pred             HHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999888888888877788888999999976543344556667899999999999


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                      +++|+++|+....+..++|+++.++.|.+.||.|+++|+++++++...++.++++.|+++..+++....++||.|||+|.
T Consensus       280 v~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~  359 (407)
T PLN02851        280 VEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRAR  359 (407)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            99999999975443457999999999999999999999999999999999999999999999887312379999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      ||+|+++|+|+++
T Consensus       360 LIDKd~~P~W~p~  372 (407)
T PLN02851        360 LVDKDFAPKWDPP  372 (407)
T ss_pred             hcCCCCCCCCCCC
Confidence            9999999999986

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=3.7e-62  Score=477.15  Aligned_cols=330  Identities=49%  Similarity=0.824  Sum_probs=290.8

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      .|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++......+.......
T Consensus        10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~   89 (381)
T PLN02988         10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN   89 (381)
T ss_pred             ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence            57888899999999999999999999999999999999999999999999999999999999998763222221122233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA  194 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~  194 (378)
                      ++...+.+.+.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+.+|+
T Consensus        90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~  169 (381)
T PLN02988         90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG  169 (381)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence            44444556778899999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++++|+||+++||||++||++++++....++++...++..+...++.+.............++..|++||+.+++++
T Consensus       170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~  249 (381)
T PLN02988        170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE  249 (381)
T ss_pred             HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999988888887777788888888888876543233455667999999999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                      |+++|+....+...+|+++.++.|.+.||.|+++|+++++++...++.++++.|+++..+++....++||.|||+|.|++
T Consensus       250 i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD  329 (381)
T PLN02988        250 IISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVD  329 (381)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcC
Confidence            99999975332357999999999999999999999999999999999999999999999988511149999999999999


Q ss_pred             CCCCCCCCCC
Q 017069          355 RDIAPKVPFH  364 (378)
Q Consensus       355 k~r~P~~~~~  364 (378)
                      |+++|+|+++
T Consensus       330 Kd~~P~W~p~  339 (381)
T PLN02988        330 KDKNPKWEPR  339 (381)
T ss_pred             CCCCCCCCCC
Confidence            9999999976

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=5.9e-62  Score=477.19  Aligned_cols=332  Identities=70%  Similarity=1.138  Sum_probs=292.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      .+.|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+.....
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            66688999999999999999999999999999999999999999999999999999999999999988643222222223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  192 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~  192 (378)
                      ..++...+.+.+.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.+
T Consensus       116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~  195 (401)
T PLN02157        116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY  195 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence            44555566678889999999999999999999999999999999999999999999999999999999999999966999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |++||++++|+||+++||||++||++++++..+.++++...++..+...++.+.....+...........|+.||+.+++
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~  275 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV  275 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence            99999999999999999999999999997777777777788888888888777654333334455568899999999999


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                      +|++++|+........+|+++.++.|.+.||.|++++.++++++...++.++++.|+++..+++....++||.|||+|.|
T Consensus       276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L  355 (401)
T PLN02157        276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL  355 (401)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            99999998654444679999999999999999999999999999999999999999999998874112599999999999


Q ss_pred             cCCCCCCCCCCC
Q 017069          353 VDRDIAPKVPFH  364 (378)
Q Consensus       353 ~ek~r~P~~~~~  364 (378)
                      ++|+++|+|+++
T Consensus       356 iDKd~~P~W~p~  367 (401)
T PLN02157        356 IDKDEAPKWDPP  367 (401)
T ss_pred             cCCCCCCCCCCC
Confidence            999999999976

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1e-60  Score=468.79  Aligned_cols=333  Identities=44%  Similarity=0.759  Sum_probs=292.2

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      .+.++.+.++.+++|++||||||++.|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++......  .
T Consensus         7 ~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~   84 (379)
T PLN02874          7 NPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--D   84 (379)
T ss_pred             CCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--c
Confidence            34566789999999999999999999999999999999999999999999999999999999999999987532111  1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .....++..++.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~  164 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHL  164 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHH
Confidence            12223344455667789999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+|++||++++|+||+++|||++|||+++++++..++.++...+...++.++++|...............+.|..||+.
T Consensus       165 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  244 (379)
T PLN02874        165 GEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSK  244 (379)
T ss_pred             HHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCC
Confidence            99999999999999999999999999998887766677777777788889999888765444455666678999999999


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                      +++.++++.|++..++..++||.+++++|+++||.|++.+|++++++...++.++++.|+......+....++||+|||+
T Consensus       245 ~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~  324 (379)
T PLN02874        245 DTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIR  324 (379)
T ss_pred             CCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccc
Confidence            99999999999877666789999999999999999999999999998888999999999888776653223799999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+++|+|+|+|+++
T Consensus       325 AflidK~r~P~w~~~  339 (379)
T PLN02874        325 ALVIDKDNAPKWNPS  339 (379)
T ss_pred             eEEEcCCCCCCCCCC
Confidence            998788799999987

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=3.7e-59  Score=452.60  Aligned_cols=321  Identities=40%  Similarity=0.674  Sum_probs=280.1

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      .+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.............
T Consensus         4 ~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (342)
T PRK05617          4 EVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD   83 (342)
T ss_pred             eEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence            588999999999999999999999999999999999999999999999999999 9999999999876432111111111


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL  193 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l  193 (378)
                      .++.....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..|++|
T Consensus        84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~l  163 (342)
T PRK05617         84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYL  163 (342)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHHH
Confidence            34444557888899999999999999999999999999999999999999999999999999999999999988449999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCC-CHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD-DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      ++||+.++|+||+++|||++|+|+++++...+.+.+.... +.+.++..+.+|......  ..+......|++||+..++
T Consensus       164 lltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~  241 (342)
T PRK05617        164 ALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPA--SELAAQRAWIDECFAGDTV  241 (342)
T ss_pred             HHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCc--chhHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999998887655555544433 344667777777776433  3667789999999999999


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                      ++|+++|++.    .++||.+++++|+++||.+++.+|+++++....+++++++.|.+.+...+.   ++|++||+++|+
T Consensus       242 ~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~afl  314 (342)
T PRK05617        242 EDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAVL  314 (342)
T ss_pred             HHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceEE
Confidence            9999999987    358999999999999999999999999998888999999999999998887   999999999997


Q ss_pred             cCCCCCCCCCCC
Q 017069          353 VDRDIAPKVPFH  364 (378)
Q Consensus       353 ~ek~r~P~~~~~  364 (378)
                      ++|+|+|+|+++
T Consensus       315 ~ek~r~p~~~~~  326 (342)
T PRK05617        315 IDKDRNPKWSPA  326 (342)
T ss_pred             EcCCCCCCCCCC
Confidence            566589999987

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-57  Score=421.15  Aligned_cols=335  Identities=51%  Similarity=0.820  Sum_probs=311.4

Q ss_pred             CccccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhc
Q 017069           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMN  105 (378)
Q Consensus        27 ~~~~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~  105 (378)
                      ....+....|.++..+...+||||||+..||||.+|+..+.-.|..++.++.+++||+.|.| ++||+|+|+........
T Consensus        31 ~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~  110 (401)
T KOG1684|consen   31 SVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIK  110 (401)
T ss_pred             ccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhh
Confidence            34445668899999999999999999999999999999999999999999999999999996 99999999998877766


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhc
Q 017069          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                      ++.......++...+.+...+.++.||.||.++|..+|||.+|+..--||||+|++.|.+||..+|++|+.|++++++|+
T Consensus       111 d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrl  190 (401)
T KOG1684|consen  111 DKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRL  190 (401)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhC
Confidence            77777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCH-HHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-SVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      .|..+.|+.|||.++++.||+..||.++.|+++++..++++|...+..++ +.+.+.+++|+....++.......++.|+
T Consensus       191 pg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~  270 (401)
T KOG1684|consen  191 PGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN  270 (401)
T ss_pred             ccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence            99779999999999999999999999999999999999999984444444 78999999999998777777778899999


Q ss_pred             HhcCCCCHHHHHHHHHhh-ccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCc
Q 017069          265 KCFGLDTVEEIIDSLESE-ASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~-~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  343 (378)
                      .||+.++++||+++|+.. ......+||++.++.|.+.||.|+++|.+.++++...++++++..|+++..+...   +.|
T Consensus       271 ~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~---~~D  347 (401)
T KOG1684|consen  271 KCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLM---RGD  347 (401)
T ss_pred             HhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---ccc
Confidence            999999999999988542 2456779999999999999999999999999999999999999999999999887   999


Q ss_pred             HHhhHhhhhcCCCCCCCCCCC
Q 017069          344 FYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       344 ~~egv~afl~ek~r~P~~~~~  364 (378)
                      |.||++|.|++|+++|+|++.
T Consensus       348 F~EGvRA~LIDKd~~PKW~p~  368 (401)
T KOG1684|consen  348 FCEGVRAVLIDKDQNPKWDPA  368 (401)
T ss_pred             hhhhhhheeecCCcCCCCCCc
Confidence            999999999999999999986

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-54  Score=403.82  Aligned_cols=256  Identities=29%  Similarity=0.400  Sum_probs=229.8

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      +.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            4688999999999999999999999999999999999999999999999999999 799999999987542111112223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL  162 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence            44555566788899999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|++++|+||+++||||+|+|++++++.                                                
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~------------------------------------------------  194 (260)
T PRK05980        163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPA------------------------------------------------  194 (260)
T ss_pred             HHHHcCCccCHHHHHHcCCCCcccCHHHHHHH------------------------------------------------
Confidence            99999999999999999999999998776432                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.++++++++.+|.+++.+|++++.....++.++++.|...+...+.   ++|+++|+++|
T Consensus       195 -------------------a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  252 (260)
T PRK05980        195 -------------------ARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAAW  252 (260)
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                               22358899999999999999999998888999999999999998887   99999999999


Q ss_pred             hcCCCCCCCC
Q 017069          352 MVDRDIAPKV  361 (378)
Q Consensus       352 l~ek~r~P~~  361 (378)
                      + +| |+|+|
T Consensus       253 ~-~k-r~p~~  260 (260)
T PRK05980        253 I-ER-RRPAY  260 (260)
T ss_pred             h-cc-CCCCC
Confidence            9 88 89998

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-55  Score=393.95  Aligned_cols=251  Identities=27%  Similarity=0.349  Sum_probs=224.2

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      .....+++|+.||||||+++|+++..++.||.+++..++.|++++++||||.|+.||+|+|++++.......-      .
T Consensus        39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~------~  112 (290)
T KOG1680|consen   39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV------S  112 (290)
T ss_pred             EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc------c
Confidence            3445577999999999999999999999999999999999999999999999999999999999875311111      1


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...+.+.+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|++.+|+|.+|.. |++++
T Consensus       113 ~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~  192 (290)
T KOG1680|consen  113 DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMI  192 (290)
T ss_pred             cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHH
Confidence            11122334445589999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++++|+||+++|||++|||.+++.  .++.                                               
T Consensus       193 ltg~~~~AqeA~~~GlVn~Vvp~~~~l--~eAv-----------------------------------------------  223 (290)
T KOG1680|consen  193 LTGRRLGAQEAKKIGLVNKVVPSGDAL--GEAV-----------------------------------------------  223 (290)
T ss_pred             HhcCcccHHHHHhCCceeEeecchhHH--HHHH-----------------------------------------------
Confidence            999999999999999999999998863  2322                                               


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                        +++.+|+++||.+++..|+.++.+.+.++.+++..|..++...+.   .+|..|||.+|. +
T Consensus       224 ------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f~-~  281 (290)
T KOG1680|consen  224 ------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAFA-E  281 (290)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHhc-c
Confidence                              368999999999999999999999999999999999999999998   999999999998 8


Q ss_pred             CCCCCCCCCC
Q 017069          355 RDIAPKVPFH  364 (378)
Q Consensus       355 k~r~P~~~~~  364 (378)
                      | |+|+|+.+
T Consensus       282 k-r~~~~~k~  290 (290)
T KOG1680|consen  282 K-RKPKFSKK  290 (290)
T ss_pred             c-CCcccccC
Confidence            8 99999864

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-53  Score=399.73  Aligned_cols=254  Identities=21%  Similarity=0.274  Sum_probs=228.7

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +..+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...    +...
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~   76 (258)
T PRK09076          2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV   76 (258)
T ss_pred             ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence            4568899999999999999985 999999999999999999999999999999999 789999999987531    1222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  156 (258)
T PRK09076         77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA  156 (258)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            233444556788889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++++++|+.++|+||+++||||+|+|++++.+.                                               
T Consensus       157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-----------------------------------------------  189 (258)
T PRK09076        157 KRMILCGERVDAATALRIGLVEEVVEKGEAREA-----------------------------------------------  189 (258)
T ss_pred             HHHHHcCCcCCHHHHHHCCCCceecCchhHHHH-----------------------------------------------
Confidence            999999999999999999999999998876431                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          +.+++++|+..+|.+++.+|++++.....++.+.++.|...+..++.   ++|++||+++
T Consensus       190 --------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~a  246 (258)
T PRK09076        190 --------------------ALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVNA  246 (258)
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence                                22368899999999999999999988878899999999999988887   9999999999


Q ss_pred             hhcCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPF  363 (378)
Q Consensus       351 fl~ek~r~P~~~~  363 (378)
                      |+ +| |+|+|++
T Consensus       247 f~-~k-r~p~~~~  257 (258)
T PRK09076        247 FL-EK-RAPQWKN  257 (258)
T ss_pred             Hh-cC-CCCCCCC
Confidence            99 88 8999975

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-53  Score=400.36  Aligned_cols=254  Identities=25%  Similarity=0.347  Sum_probs=227.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...    ..  .
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~   76 (257)
T PRK05862          3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--M   76 (257)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--h
Confidence            34688999999999999999999999999999999999999999999999999999999999999987532    11  1


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.
T Consensus        77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK05862         77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM  156 (257)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence            11223344567889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|+++|+.++|+||+++||||+|+|++++++..                                               
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-----------------------------------------------  189 (257)
T PRK05862        157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEA-----------------------------------------------  189 (257)
T ss_pred             HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999987764322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                          .++++++++.+|.++..+|++++.....++.++++.|.+.+..++.   ++|+++|+++|
T Consensus       190 --------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af  246 (257)
T PRK05862        190 --------------------LAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAF  246 (257)
T ss_pred             --------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                                2358889999999999999999998888999999999999988887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       247 ~-~k-r~p~~~~~  257 (257)
T PRK05862        247 V-EK-RKPVFKHR  257 (257)
T ss_pred             h-cc-CCCCCCCC
Confidence            9 88 89999863

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-53  Score=398.10  Aligned_cols=252  Identities=26%  Similarity=0.255  Sum_probs=226.1

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      +.|.++.+++|++||||||++.|+||.+|+.+|.++++.++  +++++|||||.|++||+|+|++++...    ......
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~   75 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGM   75 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHH
Confidence            46788999999999999999999999999999999999997  789999999999999999999987532    111122


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  155 (255)
T PRK08150         76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD  155 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            3345566788889999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |++||+.++|+||+++||||+|||++++.+..                                                
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------------  187 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKA------------------------------------------------  187 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHH------------------------------------------------
Confidence            99999999999999999999999988774322                                                


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                         .+++++|++.+|.+++.+|++++.....++++.++.|.+.+...+.   ++|++||+++|+
T Consensus       188 -------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~  245 (255)
T PRK08150        188 -------------------MELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQS---APEAKERLRAFL  245 (255)
T ss_pred             -------------------HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                               2368999999999999999999988888899999999888877776   999999999999


Q ss_pred             cCCCCCCCCCC
Q 017069          353 VDRDIAPKVPF  363 (378)
Q Consensus       353 ~ek~r~P~~~~  363 (378)
                       +| |+|+|++
T Consensus       246 -~k-r~p~~~~  254 (255)
T PRK08150        246 -EK-KAAKVKP  254 (255)
T ss_pred             -cc-CCCCCCC
Confidence             88 8999965

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-53  Score=402.74  Aligned_cols=259  Identities=24%  Similarity=0.298  Sum_probs=230.5

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-------
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-------  105 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-------  105 (378)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.....       
T Consensus         5 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   84 (272)
T PRK06142          5 YESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL   84 (272)
T ss_pred             cceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccc
Confidence            4568999999999999999999999999999999999999999999999999999999999999998754210       


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhc
Q 017069          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                      .........+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  164 (272)
T PRK06142         85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI  164 (272)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH
Confidence            01112233344556778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  263 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (378)
                      +|.. +++|+++|++++|+||+++||||+|+|+ +++.+.                                        
T Consensus       165 ~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~----------------------------------------  204 (272)
T PRK06142        165 IGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAA----------------------------------------  204 (272)
T ss_pred             hCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHH----------------------------------------
Confidence            9999 9999999999999999999999999996 555421                                        


Q ss_pred             HHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCc
Q 017069          264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (378)
Q Consensus       264 ~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  343 (378)
                                                 +.+++++|++.||.+++.+|+++++....++.++++.|...+..++.   ++|
T Consensus       205 ---------------------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d  254 (272)
T PRK06142        205 ---------------------------AHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKD  254 (272)
T ss_pred             ---------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---Ccc
Confidence                                       22368899999999999999999988888899999999999988887   999


Q ss_pred             HHhhHhhhhcCCCCCCCCCC
Q 017069          344 FYEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       344 ~~egv~afl~ek~r~P~~~~  363 (378)
                      ++|||++|+ +| |+|+|++
T Consensus       255 ~~egv~af~-~k-r~p~~~~  272 (272)
T PRK06142        255 LTEAIAAHM-EK-RPPEFTG  272 (272)
T ss_pred             HHHHHHHHh-cC-CCCCCCC
Confidence            999999999 88 8999964

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-53  Score=399.49  Aligned_cols=259  Identities=24%  Similarity=0.322  Sum_probs=227.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++ |+++++|||+|.|++||+|+|++++............
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (262)
T PRK08140          3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG   81 (262)
T ss_pred             CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence            456899999999999999999999999999999999999999 9999999999999999999999987532100111111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~  161 (262)
T PRK08140         82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL  161 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence            12222345577889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|+++|++++|+||+++||||+|||++++.+  +                                              
T Consensus       162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~----------------------------------------------  193 (262)
T PRK08140        162 GLALLGEKLSAEQAEQWGLIWRVVDDAALAD--E----------------------------------------------  193 (262)
T ss_pred             HHHHcCCCcCHHHHHHcCCccEeeChHHHHH--H----------------------------------------------
Confidence            9999999999999999999999999877643  2                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.+++++|++.+|.+++.+|++++.....++.++++.|...+..++.   ++|++||+++|
T Consensus       194 -------------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  251 (262)
T PRK08140        194 -------------------AQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAF  251 (262)
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                               22368999999999999999999988888999999999999888887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|.|+++
T Consensus       252 ~-~k-r~p~~~~~  262 (262)
T PRK08140        252 L-EK-RAPRFTGR  262 (262)
T ss_pred             h-cC-CCCCCCCC
Confidence            9 88 89999753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-53  Score=399.67  Aligned_cols=260  Identities=22%  Similarity=0.309  Sum_probs=232.5

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCCh
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ...+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  ...
T Consensus         8 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~   85 (269)
T PRK06127          8 SPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SDA   85 (269)
T ss_pred             CCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cch
Confidence            3455689999999999999999999999999999999999999999999999999998 7999999999875321  112


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      +....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        86 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  165 (269)
T PRK06127         86 EAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPS  165 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHH
Confidence            22334445566788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       +.++++||++++|+||+++||||+|||++++++...                                           
T Consensus       166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  202 (269)
T PRK06127        166 AAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALA-------------------------------------------  202 (269)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999877643222                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                                              ++++++++.+|.+++.+|++++.....++++.++.|...+..++.   ++|++||+
T Consensus       203 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~  255 (269)
T PRK06127        203 ------------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREGR  255 (269)
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHHH
Confidence                                    368899999999999999999998888899999999999888887   99999999


Q ss_pred             hhhhcCCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPFH  364 (378)
Q Consensus       349 ~afl~ek~r~P~~~~~  364 (378)
                      .+|+ +| |+|+|+++
T Consensus       256 ~af~-ek-r~p~~~~~  269 (269)
T PRK06127        256 AAFM-EK-RKPVFKGR  269 (269)
T ss_pred             HHHh-cC-CCCCCCCC
Confidence            9999 88 89999763

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-53  Score=398.68  Aligned_cols=259  Identities=25%  Similarity=0.304  Sum_probs=225.7

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++............
T Consensus         4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (263)
T PRK07799          4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG   83 (263)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence            45689999999999999999999999999999999999999999999999999999999999999987642111010000


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ......+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        84 ~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  162 (263)
T PRK07799         84 SYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVAC  162 (263)
T ss_pred             hhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            0001122223 346789999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||++++|+||+++||||+|||++++.+  +++                                            
T Consensus       163 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a~--------------------------------------------  196 (263)
T PRK07799        163 DLLLTGRHITAAEAKEIGLIGHVVPDGQALD--KAL--------------------------------------------  196 (263)
T ss_pred             HHHHcCCCCCHHHHHHcCCccEecCcchHHH--HHH--------------------------------------------
Confidence            9999999999999999999999999887643  222                                            


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++.||.+++.+|++++.....++.++++.|.+.+..++.   ++|+++|+++|
T Consensus       197 ---------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af  252 (263)
T PRK07799        197 ---------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPRAF  252 (263)
T ss_pred             ---------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHHHH
Confidence                                 358899999999999999999998888899999999999988887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|.++
T Consensus       253 ~-~~-r~p~~~~~  263 (263)
T PRK07799        253 A-EK-RAPNFQGR  263 (263)
T ss_pred             H-cc-CCCCCCCC
Confidence            9 88 89999764

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-53  Score=399.52  Aligned_cols=259  Identities=22%  Similarity=0.330  Sum_probs=228.7

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhcc--CCh
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ--GKL  109 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~--~~~  109 (378)
                      .+.+.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|.|++||+|.|++++......  ...
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (266)
T PRK09245          2 TDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSP   81 (266)
T ss_pred             CCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccc
Confidence            3468999999999999999999999995 9999999999999999999999999999999999999987542110  011


Q ss_pred             HH-HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          110 EE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       110 ~~-~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      .. ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  161 (266)
T PRK09245         82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM  161 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence            11 12233345667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +++|+++|++++|+||+++||||+|+|++++++..                                           
T Consensus       162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-------------------------------------------  198 (266)
T PRK09245        162 ARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAA-------------------------------------------  198 (266)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHH-------------------------------------------
Confidence            9 99999999999999999999999999987764322                                           


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              .+++++|++.||.+++.+|++++.....++++.++.|...+..++.   ++|++||
T Consensus       199 ------------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg  251 (266)
T PRK09245        199 ------------------------RALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHREA  251 (266)
T ss_pred             ------------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHHH
Confidence                                    2368999999999999999999998888899999999988888876   9999999


Q ss_pred             HhhhhcCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPF  363 (378)
Q Consensus       348 v~afl~ek~r~P~~~~  363 (378)
                      +++|+ +| |+|.|++
T Consensus       252 ~~af~-~k-r~p~~~~  265 (266)
T PRK09245        252 VDAFL-EK-RPPVFTG  265 (266)
T ss_pred             HHHHH-cC-CCCCCCC
Confidence            99999 88 8999975

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=2.5e-53  Score=397.35  Aligned_cols=252  Identities=23%  Similarity=0.328  Sum_probs=227.3

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      ..|.++++++|++||||||++.|++|.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++...    +.  ..
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~   75 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA   75 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence            3578889999999999999999999999999999999999999999999999999999999999987531    11  11


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.+
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            1223345677889999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      ++++|+.++|+||+++||||+|+|++++.+  .                                               
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~--~-----------------------------------------------  186 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLE--R-----------------------------------------------  186 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHH--H-----------------------------------------------
Confidence            999999999999999999999999877642  1                                               


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                        +.+++++|+..||.+++.+|+.++.....++.++++.|.+.+..++.   ++|+++|+++|+
T Consensus       187 ------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~i~af~  245 (255)
T PRK09674        187 ------------------ALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAA---TEDRHEGISAFL  245 (255)
T ss_pred             ------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                              22368999999999999999999998888999999999999988887   999999999999


Q ss_pred             cCCCCCCCCCC
Q 017069          353 VDRDIAPKVPF  363 (378)
Q Consensus       353 ~ek~r~P~~~~  363 (378)
                       +| |+|+|.+
T Consensus       246 -~k-r~p~~~~  254 (255)
T PRK09674        246 -EK-RTPDFKG  254 (255)
T ss_pred             -cc-CCCCCCC
Confidence             88 8999975

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.3e-53  Score=397.79  Aligned_cols=257  Identities=21%  Similarity=0.277  Sum_probs=230.3

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ...+.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++...   ...+
T Consensus         8 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~   84 (266)
T PRK08139          8 TEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLA   84 (266)
T ss_pred             ccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchh
Confidence            3456889999999999999999999999999999999999999999999999999999999999999987532   1122


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....++..+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|++++|.. 
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~  163 (266)
T PRK08139         85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQ  163 (266)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHH
Confidence            2334455667788899999999999999999999999999999999999999999999999999765 56899999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +++|+++|++++|+||+++||||+|+|++++++..                                             
T Consensus       164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------  198 (266)
T PRK08139        164 AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAV---------------------------------------------  198 (266)
T ss_pred             HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHH---------------------------------------------
Confidence            99999999999999999999999999987774322                                             


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .+++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|+++|++
T Consensus       199 ----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~  253 (266)
T PRK08139        199 ----------------------ARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGID  253 (266)
T ss_pred             ----------------------HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence                                  2358999999999999999999998888999999999999888887   999999999


Q ss_pred             hhhcCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPF  363 (378)
Q Consensus       350 afl~ek~r~P~~~~  363 (378)
                      +|+ +| |+|+|.+
T Consensus       254 af~-~k-r~p~~~~  265 (266)
T PRK08139        254 AFL-EK-RPPEWRG  265 (266)
T ss_pred             HHh-cC-CCCCCCC
Confidence            999 88 8999975

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=3.9e-53  Score=397.26  Aligned_cols=256  Identities=27%  Similarity=0.377  Sum_probs=231.3

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~   78 (260)
T PRK05809          3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE   78 (260)
T ss_pred             cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence            46788999999999999999999999999999999999999999999999999999 999999999987532    1122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            233444456788899999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|+++|+.++|+||+++||||+|+|++++.+                                                
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~------------------------------------------------  190 (260)
T PRK05809        159 KELIYTGDMINAEEALRIGLVNKVVEPEKLME------------------------------------------------  190 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCcccChHHHHH------------------------------------------------
Confidence            99999999999999999999999999876642                                                


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                         .+.++++++++.+|.+++.+|+.++.....++.++++.|.+.+..++.   ++|++||+++
T Consensus       191 -------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a  248 (260)
T PRK05809        191 -------------------EAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA  248 (260)
T ss_pred             -------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                               223468899999999999999999998888999999999999999987   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ +| |+|+|.++
T Consensus       249 f~-~~-r~p~~~~~  260 (260)
T PRK05809        249 FV-EK-REKNFKNK  260 (260)
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 88 89999763

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-53  Score=400.55  Aligned_cols=257  Identities=21%  Similarity=0.270  Sum_probs=229.5

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      .+.++.+++|++||||||++.|+++.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......+......
T Consensus        18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   97 (277)
T PRK08258         18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA   97 (277)
T ss_pred             ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999998743211112222334


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccC-CcchHHHHhhcchHH-HHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~g~~-a~~  192 (378)
                      +...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. +++
T Consensus        98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~  177 (277)
T PRK08258         98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE  177 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence            445556788899999999999999999999999999999999999999999999999995 778999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |+++|++++|+||+++||||+|+|++++++.                                                 
T Consensus       178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~-------------------------------------------------  208 (277)
T PRK08258        178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAE-------------------------------------------------  208 (277)
T ss_pred             HHHcCCCCCHHHHHHcCCCcEecCHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999998776432                                                 


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                        +.+++++|++.||.+++.+|++++.....++++.++.|...+..++.   ++|++||+++|+
T Consensus       209 ------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~af~  267 (277)
T PRK08258        209 ------------------AQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYEAFV  267 (277)
T ss_pred             ------------------HHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence                              22368899999999999999999998888899999999999988887   999999999999


Q ss_pred             cCCCCCCCCCC
Q 017069          353 VDRDIAPKVPF  363 (378)
Q Consensus       353 ~ek~r~P~~~~  363 (378)
                       +| |+|+|++
T Consensus       268 -ek-r~p~~~~  276 (277)
T PRK08258        268 -AK-RKPVFEG  276 (277)
T ss_pred             -cC-CCCCCCC
Confidence             88 8999975

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=3.6e-53  Score=396.52  Aligned_cols=254  Identities=25%  Similarity=0.319  Sum_probs=225.0

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++..... ...+....+
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~   78 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPG-GAPDLGRTI   78 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccc-cchhHHHHH
Confidence            467889999999999999999999999999999999999998 999999999999999999998753211 111111122


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~  158 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA  158 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            22335677889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      ++|++++|+||+++||||+|+|++++++.                                                   
T Consensus       159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~---------------------------------------------------  187 (256)
T TIGR02280       159 MLGEKLDARTAASWGLIWQVVDDAALMDE---------------------------------------------------  187 (256)
T ss_pred             HcCCCCCHHHHHHcCCcceeeChHHHHHH---------------------------------------------------
Confidence            99999999999999999999998776431                                                   


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                      +.+++++|++.||.+++.+|+.++......+.++++.|...+..++.   ++|+++|+++|+ +
T Consensus       188 ----------------a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~  247 (256)
T TIGR02280       188 ----------------AQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFL-D  247 (256)
T ss_pred             ----------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHH-c
Confidence                            22368899999999999999999988888899999999999988887   999999999999 8


Q ss_pred             CCCCCCCCC
Q 017069          355 RDIAPKVPF  363 (378)
Q Consensus       355 k~r~P~~~~  363 (378)
                      | |+|+|++
T Consensus       248 k-r~p~~~~  255 (256)
T TIGR02280       248 K-RNPQFTG  255 (256)
T ss_pred             C-CCCCCCC
Confidence            8 8999975

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-53  Score=396.92  Aligned_cols=256  Identities=22%  Similarity=0.333  Sum_probs=231.0

Q ss_pred             CCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      .+.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    +..
T Consensus         2 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~~   77 (260)
T PRK07657          2 LQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NEE   77 (260)
T ss_pred             CceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Chh
Confidence            35788886 789999999999999999999999999999999999999999999999 599999999987531    122


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  157 (260)
T PRK07657         78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  157 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence            3344555667788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+++++|++++|+||+++||||+++|++++++.                                              
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~----------------------------------------------  191 (260)
T PRK07657        158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK----------------------------------------------  191 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998776432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|+..+|.+++.+|+.++.....++.++++.|...+..++.   ++|++||++
T Consensus       192 ---------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~  247 (260)
T PRK07657        192 ---------------------AIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGLQ  247 (260)
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHHH
Confidence                                 22368899999999999999999998888899999999999988887   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+ +| |+|+|+++
T Consensus       248 af~-~~-r~~~~~~~  260 (260)
T PRK07657        248 AFK-EK-RKPMYKGE  260 (260)
T ss_pred             HHh-cC-CCCCCCCC
Confidence            999 88 89999753

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-53  Score=396.18  Aligned_cols=253  Identities=24%  Similarity=0.324  Sum_probs=228.4

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      .+.++.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...   ........
T Consensus         3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~~   78 (257)
T PRK07658          3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV---TEAEQATE   78 (257)
T ss_pred             eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcc---CchhhHHH
Confidence            67889999999999999985 999999999999999999999999999999999999999999987532   11122233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                      +......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  158 (257)
T PRK07658         79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM  158 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence            445566788899999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      +++|++++|+||+++||||+|+|++++.+.                                                  
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~--------------------------------------------------  188 (257)
T PRK07658        159 MLTSEPITGAEALKWGLVNGVFPEETLLDD--------------------------------------------------  188 (257)
T ss_pred             HHcCCCcCHHHHHHcCCcCeecChhHHHHH--------------------------------------------------
Confidence            999999999999999999999998776431                                                  


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhc
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV  353 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~  353 (378)
                                       +.+++++|++.+|.+++.+|++++.....++++.++.|...+..++.   ++|+++|+++|+ 
T Consensus       189 -----------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af~-  247 (257)
T PRK07658        189 -----------------AKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAFL-  247 (257)
T ss_pred             -----------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-
Confidence                             22368899999999999999999988888899999999999998887   999999999999 


Q ss_pred             CCCCCCCCCC
Q 017069          354 DRDIAPKVPF  363 (378)
Q Consensus       354 ek~r~P~~~~  363 (378)
                      +| |+|+|++
T Consensus       248 ~k-r~p~~~~  256 (257)
T PRK07658        248 EK-RKPSFSG  256 (257)
T ss_pred             cC-CCCCCCC
Confidence            88 8999975

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=5.1e-53  Score=399.27  Aligned_cols=256  Identities=23%  Similarity=0.302  Sum_probs=225.8

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC---C----
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K----  108 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~----  108 (378)
                      +.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......   .    
T Consensus        10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   89 (275)
T PLN02664         10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS   89 (275)
T ss_pred             EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence            445568999999999999999999999999999999999999999999999999999999999875421100   1    


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ......+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  169 (275)
T PLN02664         90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY  169 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence            11223334455678888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      . ++++++||+.++|+||+++||||+|||+ +++++.                                           
T Consensus       170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~-------------------------------------------  206 (275)
T PLN02664        170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEG-------------------------------------------  206 (275)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHH-------------------------------------------
Confidence            9 9999999999999999999999999995 555321                                           


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                              +.+++++|++.+|.+++.+|++++.....++.++++.|...+..++.   ++|++|
T Consensus       207 ------------------------~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  259 (275)
T PLN02664        207 ------------------------VRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNE  259 (275)
T ss_pred             ------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHH
Confidence                                    22368999999999999999999988888999999999988888776   999999


Q ss_pred             hHhhhhcCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPF  363 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~  363 (378)
                      |+++|+ +| |+|.|.+
T Consensus       260 g~~af~-ek-r~p~~~~  274 (275)
T PLN02664        260 AVSAQI-QK-RKPVFAK  274 (275)
T ss_pred             HHHHHh-cc-CCCCCCC
Confidence            999999 88 8999975

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-53  Score=395.46  Aligned_cols=254  Identities=26%  Similarity=0.370  Sum_probs=227.9

Q ss_pred             CCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        32 ~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..+.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ..  
T Consensus         5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~--   79 (261)
T PRK08138          5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---GA--   79 (261)
T ss_pred             CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---ch--
Confidence            345678887 789999999999999999999999999999999999999999999999999999999987531   11  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                       ...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  158 (261)
T PRK08138         80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK  158 (261)
T ss_pred             -hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence             112334456778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+|+++|+.++|+||+++||||+|+|++++.+  ++                                           
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~a-------------------------------------------  193 (261)
T PRK08138        159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLP--RA-------------------------------------------  193 (261)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHH--HH-------------------------------------------
Confidence            999999999999999999999999999877643  21                                           


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .++++++++.+|.+++.+|++++.....++.+++..|.+.+..++.   ++|+++|++
T Consensus       194 ----------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~  248 (261)
T PRK08138        194 ----------------------LELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMD  248 (261)
T ss_pred             ----------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                  1357888999999999999999988888899999999999998887   999999999


Q ss_pred             hhhcCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPF  363 (378)
Q Consensus       350 afl~ek~r~P~~~~  363 (378)
                      +|+ +| |+|+|++
T Consensus       249 af~-~k-r~~~~~~  260 (261)
T PRK08138        249 AFL-EK-RKPAYKG  260 (261)
T ss_pred             HHh-cC-CCCCCCC
Confidence            999 88 8999975

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=5e-53  Score=394.28  Aligned_cols=248  Identities=24%  Similarity=0.340  Sum_probs=224.7

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      +++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...    .......+...+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   77 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL   77 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999984 899999999987531    122233455556


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCC
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (378)
                      ..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  157 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR  157 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence            7788889999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHHH
Q 017069          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (378)
Q Consensus       199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~  278 (378)
                      .++|+||+++||||+|+|++++.+  +                                                     
T Consensus       158 ~~~a~eA~~~Glv~~vv~~~~~~~--~-----------------------------------------------------  182 (251)
T PLN02600        158 RIGAREAASMGLVNYCVPAGEAYE--K-----------------------------------------------------  182 (251)
T ss_pred             ccCHHHHHHcCCCcEeeChhHHHH--H-----------------------------------------------------
Confidence            999999999999999999887642  2                                                     


Q ss_pred             HHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCCCCC
Q 017069          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIA  358 (378)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek~r~  358 (378)
                                  +.+++++|++.+|.+++.+|++++.....++.+.++.|...+..++.   ++|++||+++|+ +| |+
T Consensus       183 ------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r~  245 (251)
T PLN02600        183 ------------ALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLAAFA-EK-RK  245 (251)
T ss_pred             ------------HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-cC-CC
Confidence                        22368999999999999999999988888999999999999999887   999999999999 88 89


Q ss_pred             CCCCCC
Q 017069          359 PKVPFH  364 (378)
Q Consensus       359 P~~~~~  364 (378)
                      |+|+++
T Consensus       246 p~~~~~  251 (251)
T PLN02600        246 PVYTGK  251 (251)
T ss_pred             CCCCCC
Confidence            999763

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-53  Score=395.49  Aligned_cols=252  Identities=21%  Similarity=0.211  Sum_probs=221.8

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++........    ..+
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~----~~~   76 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG----FPF   76 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch----hhh
Confidence            4678899999999999999999999999999999999999999999999999999999999998754211111    111


Q ss_pred             HHHHHH-HHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          116 FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       116 ~~~~~~-l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                      ...... +...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus        77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  156 (255)
T PRK06563         77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY  156 (255)
T ss_pred             hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence            111122 23357899999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      ++||+.++|+||+++||||+|+|++++.+  ++                                               
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~a-----------------------------------------------  187 (255)
T PRK06563        157 LLTGDEFDAQEALRLGLVQEVVPPGEQLE--RA-----------------------------------------------  187 (255)
T ss_pred             HHcCCCcCHHHHHHcCCCcEeeCHHHHHH--HH-----------------------------------------------
Confidence            99999999999999999999999877642  22                                               


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhc
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV  353 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~  353 (378)
                                        .+++++|++.+|.+++.+|++++.....++.++++.|...+..++.   ++|++||+++|+ 
T Consensus       188 ------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-  245 (255)
T PRK06563        188 ------------------IELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFL-  245 (255)
T ss_pred             ------------------HHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-
Confidence                              2358899999999999999999988888999999999999888887   999999999999 


Q ss_pred             CCCCCCCCCC
Q 017069          354 DRDIAPKVPF  363 (378)
Q Consensus       354 ek~r~P~~~~  363 (378)
                      +| |+|+|++
T Consensus       246 ~k-r~p~~~~  254 (255)
T PRK06563        246 ER-RPARFKG  254 (255)
T ss_pred             cC-CCCCCCC
Confidence            88 8999975

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-53  Score=393.67  Aligned_cols=252  Identities=23%  Similarity=0.281  Sum_probs=222.8

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...   ..... 
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~-   77 (254)
T PRK08252          2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI-   77 (254)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh-
Confidence            45688999999999999999999999999999999999999999999999999999999999999987632   11111 


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                        ....+..++  ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        78 --~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  153 (254)
T PRK08252         78 --PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM  153 (254)
T ss_pred             --hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHH
Confidence              111122222  1479999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|++++|+||+++||||+|+|++++.+                                                 
T Consensus       154 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~-------------------------------------------------  184 (254)
T PRK08252        154 ELALTGDMLTAERAHELGLVNRLTEPGQALD-------------------------------------------------  184 (254)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCcchHHH-------------------------------------------------
Confidence            9999999999999999999999999887643                                                 


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                        .+.++++++++.||.+++.+|++++.....++.++++.|...+..++.   ++|++||+.+|
T Consensus       185 ------------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~af  243 (254)
T PRK08252        185 ------------------AALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATAF  243 (254)
T ss_pred             ------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHH
Confidence                              122368899999999999999999988888899999999999888887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       244 ~-~k-r~p~~~~~  254 (254)
T PRK08252        244 A-EK-RAPVWTGK  254 (254)
T ss_pred             h-cC-CCCCCCCC
Confidence            9 88 89999753

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.2e-53  Score=395.50  Aligned_cols=258  Identities=23%  Similarity=0.330  Sum_probs=225.6

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........ ...
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~   81 (262)
T PRK05995          3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN   81 (262)
T ss_pred             CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence            5678999999999999999999999999999999999999999999999999999999999999998753211111 111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+.+ +++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~  160 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR  160 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence            12234456788889999999999999999999999999999999999999999999999999887654 88999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|+++|++++|+||+++||||+|+|++++.+.                                                
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~------------------------------------------------  192 (262)
T PRK05995        161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAK------------------------------------------------  192 (262)
T ss_pred             HHHHcCCccCHHHHHHcCCCCeecCHHHHHHH------------------------------------------------
Confidence            99999999999999999999999998776432                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                         +.+++++|++.||.+++.+|++++.....++.+. ++.|...+..++.   ++|+++|+++
T Consensus       193 -------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (262)
T PRK05995        193 -------------------VDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA---TEEAREGVAA  250 (262)
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                               2236899999999999999999998877788888 7888888877776   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ +| |+|+|+++
T Consensus       251 f~-~k-r~p~~~~~  262 (262)
T PRK05995        251 FL-EK-RKPAWRGR  262 (262)
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 88 89999864

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-52  Score=395.63  Aligned_cols=259  Identities=21%  Similarity=0.287  Sum_probs=229.7

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEecCCCCcccCCChhhHHHhhccC--Ch
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--KL  109 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~  109 (378)
                      |+.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|+|++++.......  ..
T Consensus         3 ~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T PRK05981          3 FKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGG   82 (266)
T ss_pred             cceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccc
Confidence            667899999999999999999999999999999999999999876 499999999999999999999875321110  00


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .....+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~  162 (266)
T PRK05981         83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKA  162 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHH
Confidence            11223344467788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       +++|+++|++++|+||+++||||+++|++++++  +                                           
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~--~-------------------------------------------  197 (266)
T PRK05981        163 RAMELSLLGEKLPAETALQWGLVNRVVDDAELMA--E-------------------------------------------  197 (266)
T ss_pred             HHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHH--H-------------------------------------------
Confidence             999999999999999999999999999877643  2                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                                            +.++++++++.+|.+++.+|++++...+.++.+.++.|...+..++.   ++|++||+
T Consensus       198 ----------------------a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~  252 (266)
T PRK05981        198 ----------------------AMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEGV  252 (266)
T ss_pred             ----------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHHH
Confidence                                  22368899999999999999999988888899999999998888887   99999999


Q ss_pred             hhhhcCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPF  363 (378)
Q Consensus       349 ~afl~ek~r~P~~~~  363 (378)
                      .+|+ +| |+|+|++
T Consensus       253 ~af~-~k-r~~~~~~  265 (266)
T PRK05981        253 GAFL-QK-RPAQFKG  265 (266)
T ss_pred             HHHh-cC-CCCCCCC
Confidence            9999 88 8999975

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-52  Score=393.48  Aligned_cols=256  Identities=23%  Similarity=0.326  Sum_probs=230.8

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      .++.++.+++|++||||||++.|++|.+|+.+|.++++.++.|++|++|||+|.|++||+|.|++++..... .......
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~   81 (260)
T PRK07511          3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQA   81 (260)
T ss_pred             CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhHH
Confidence            357889999999999999999999999999999999999999999999999999999999999998754211 1122334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.+
T Consensus        82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (260)
T PRK07511         82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE  161 (260)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence            4556677888999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |++||++++|+||+++||||+|||++++.+  +++                                             
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~--~a~---------------------------------------------  194 (260)
T PRK07511        162 LLLEGKPISAERLHALGVVNRLAEPGQALA--EAL---------------------------------------------  194 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCccEeeCchHHHH--HHH---------------------------------------------
Confidence            999999999999999999999999877643  221                                             


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                          ++++++++.+|.+++.+|+.++...+.++.++++.|.+.+..++.   ++|+++|+++|+
T Consensus       195 --------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~~f~  251 (260)
T PRK07511        195 --------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGIAAFL  251 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence                                357889999999999999999998888999999999999999887   999999999999


Q ss_pred             cCCCCCCCCC
Q 017069          353 VDRDIAPKVP  362 (378)
Q Consensus       353 ~ek~r~P~~~  362 (378)
                       +| |+|+|+
T Consensus       252 -~~-r~~~~~  259 (260)
T PRK07511        252 -EK-RAPDYK  259 (260)
T ss_pred             -cc-CCCCCC
Confidence             88 899996

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-52  Score=392.47  Aligned_cols=254  Identities=22%  Similarity=0.304  Sum_probs=229.0

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      +.+.++.+++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++...   .......
T Consensus         6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~   81 (260)
T PRK07659          6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD   81 (260)
T ss_pred             ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence            5689999999999999999999999999999999999999 58899999999999999999999987532   1122334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~  161 (260)
T PRK07659         82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ  161 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence            4556677888899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |+++|+.++|+||+++||||++| ++++++.                                                 
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~-------------------------------------------------  191 (260)
T PRK07659        162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTA-------------------------------------------------  191 (260)
T ss_pred             HHHhCCccCHHHHHHcCChHHHh-hhHHHHH-------------------------------------------------
Confidence            99999999999999999999999 6666431                                                 


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                        +.+++++|++.||.+++.+|++++.....++.+.++.|.+.+...+.   ++|++||+.+|+
T Consensus       192 ------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~  250 (260)
T PRK07659        192 ------------------AKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIRAFL  250 (260)
T ss_pred             ------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHh
Confidence                              22368899999999999999999988888899999999999988887   999999999999


Q ss_pred             cCCCCCCCCCCC
Q 017069          353 VDRDIAPKVPFH  364 (378)
Q Consensus       353 ~ek~r~P~~~~~  364 (378)
                       +| |+|+|+++
T Consensus       251 -~k-r~p~~~~~  260 (260)
T PRK07659        251 -EK-RLPVFKGE  260 (260)
T ss_pred             -cC-CCCCCCCC
Confidence             88 89999753

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-52  Score=391.72  Aligned_cols=253  Identities=25%  Similarity=0.318  Sum_probs=220.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.....  ....
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~--~~~~   80 (259)
T PRK06494          3 LPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK--RGWP   80 (259)
T ss_pred             CceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc--chhh
Confidence            46788999999999999999999999999999999999999999999999999998 79999999998753211  1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       .   ..+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 -~---~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  155 (259)
T PRK06494         81 -E---SGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA  155 (259)
T ss_pred             -h---HHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence             1   112223 334589999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+++++|+.++|+||+++||||+++|++++.+.                                               
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~-----------------------------------------------  188 (259)
T PRK06494        156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAA-----------------------------------------------  188 (259)
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHH-----------------------------------------------
Confidence            999999999999999999999999998776432                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHccccCCCCcHHhhH
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE--YRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e--~~~~~~~~~~~~~~d~~egv  348 (378)
                                          +.+++++|++.||.+++.+|++++.....+++++++.|  ...+..++.   ++|++||+
T Consensus       189 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~d~~eg~  245 (259)
T PRK06494        189 --------------------AERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRA---SQDYIEGP  245 (259)
T ss_pred             --------------------HHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---CccHHHHH
Confidence                                22368899999999999999999988888899999998  455666676   99999999


Q ss_pred             hhhhcCCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPFH  364 (378)
Q Consensus       349 ~afl~ek~r~P~~~~~  364 (378)
                      ++|+ +| |+|+|+++
T Consensus       246 ~af~-~k-r~p~~~~~  259 (259)
T PRK06494        246 KAFA-EK-RPPRWKGR  259 (259)
T ss_pred             HHHH-cc-CCCCCCCC
Confidence            9999 88 89999753

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-52  Score=390.65  Aligned_cols=257  Identities=20%  Similarity=0.267  Sum_probs=223.6

Q ss_pred             CCceEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~-~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ....
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~   81 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT   81 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence            456888885 68999999999999999999999999999999999999999999999999999999987532111 1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      .......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++ ++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~-~vG~~~a  160 (262)
T PRK07468         82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVA-RMGEANA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHh-hccHHHH
Confidence            122234456788899999999999999999999999999999999999999999999999999999988664 58998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|+++|++++|+||+++||||+|+|++++++..                                              
T Consensus       161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~----------------------------------------------  194 (262)
T PRK07468        161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAV----------------------------------------------  194 (262)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987664322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .++++++++.+|.+++.+|++++......+++.++.|...+..++.   ++|++||+++
T Consensus       195 ---------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~a  250 (262)
T PRK07468        195 ---------------------EAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAA  250 (262)
T ss_pred             ---------------------HHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                 2358899999999999999999987666788999999998888887   9999999999


Q ss_pred             hhcCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPF  363 (378)
Q Consensus       351 fl~ek~r~P~~~~  363 (378)
                      |+ +| |+|+|.+
T Consensus       251 f~-~k-r~~~~~~  261 (262)
T PRK07468        251 FF-DK-RAPAWRG  261 (262)
T ss_pred             HH-cC-CCCCCCC
Confidence            99 88 8999964

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-52  Score=391.23  Aligned_cols=256  Identities=22%  Similarity=0.326  Sum_probs=220.0

Q ss_pred             cCCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           31 DLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        31 ~~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..++.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++....  ...
T Consensus         8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~   85 (268)
T PRK07327          8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDF   85 (268)
T ss_pred             CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcH
Confidence            3467789988 5899999999999999999999999999999999999999999999999999999999875421  122


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .....++.....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  165 (268)
T PRK07327         86 EVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA  165 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence            22334445566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       +.++++||++++|+||+++||||+++|++++++  +                                           
T Consensus       166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~-------------------------------------------  200 (268)
T PRK07327        166 KAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLP--K-------------------------------------------  200 (268)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--H-------------------------------------------
Confidence             999999999999999999999999999877643  2                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHccccCCCCcHH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFY  345 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~~~d~~  345 (378)
                                            +.+++++|++.+|.+++.+|++++....   ..++..+..|.    ..+.   ++|++
T Consensus       201 ----------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~  251 (268)
T PRK07327        201 ----------------------ALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVR  251 (268)
T ss_pred             ----------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHH
Confidence                                  2236899999999999999999986532   23455444442    3444   99999


Q ss_pred             hhHhhhhcCCCCCCCCCCC
Q 017069          346 EGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       346 egv~afl~ek~r~P~~~~~  364 (378)
                      ||+.+|+ +| |+|+|++.
T Consensus       252 eg~~af~-ek-r~p~~~~~  268 (268)
T PRK07327        252 EGLASLR-EK-RAPDFPGD  268 (268)
T ss_pred             HHHHHHH-hc-CCCCCCCC
Confidence            9999999 88 89999863

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=5.3e-52  Score=392.06  Aligned_cols=253  Identities=22%  Similarity=0.310  Sum_probs=220.7

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      .|+.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus         6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   85 (275)
T PRK09120          6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL   85 (275)
T ss_pred             ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence            47779999999999999999999999999999999999999999999999999999999999999998753211111111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      .......++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  165 (275)
T PRK09120         86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA  165 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence            222333456678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|+++|+.++|+||+++|||++|||++++++..                                              
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------  199 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRART----------------------------------------------  199 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988775322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHH--HHHccccCCCC-cHHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM--SLQGVSRLISG-DFYEG  347 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~--~~~~~~~~~~~-d~~eg  347 (378)
                                           .+++++|+..+|.+++.+|++++.....++.+.++.|...  ...++.   ++ |++||
T Consensus       200 ---------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~eg  255 (275)
T PRK09120        200 ---------------------RELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREEG  255 (275)
T ss_pred             ---------------------HHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHHH
Confidence                                 2368999999999999999999998888899998887644  333454   77 89999


Q ss_pred             HhhhhcCC
Q 017069          348 VRARMVDR  355 (378)
Q Consensus       348 v~afl~ek  355 (378)
                      +++|+ +|
T Consensus       256 ~~afl-~k  262 (275)
T PRK09120        256 LKQFL-DD  262 (275)
T ss_pred             HHHHH-hc
Confidence            99999 66

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.3e-52  Score=391.58  Aligned_cols=258  Identities=21%  Similarity=0.262  Sum_probs=221.2

Q ss_pred             CCceEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~-~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |+.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .....
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~   82 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSAD-LDYNT   82 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhccc-ccchh
Confidence            677899985 7899999999999999999999999999999999999999999999999999999998753211 01111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      .......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. ++++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a  161 (265)
T PRK05674         83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA  161 (265)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence            11122345677888999999999999999999999999999999999999999999999999987765 488999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      +++++||+.++|+||+++||||+|+|++++.+  +                                             
T Consensus       162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------  194 (265)
T PRK05674        162 RRYALTAERFDGRRARELGLLAESYPAAELEA--Q---------------------------------------------  194 (265)
T ss_pred             HHHHHhCcccCHHHHHHCCCcceecCHHHHHH--H---------------------------------------------
Confidence            99999999999999999999999999876643  1                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHccccCCCCcHHhhHh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE-YRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e-~~~~~~~~~~~~~~d~~egv~  349 (378)
                                          +.+++++|++.||.+++.+|++++.....++.++++.+ ...+...+.   ++|++||++
T Consensus       195 --------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~e~~~  251 (265)
T PRK05674        195 --------------------VEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRV---SAEGQEGLR  251 (265)
T ss_pred             --------------------HHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                12368899999999999999999998888888887653 345555665   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+ +| |+|+|...
T Consensus       252 af~-~k-r~p~~~~~  264 (265)
T PRK05674        252 AFL-EK-RTPAWQTD  264 (265)
T ss_pred             HHH-cc-CCCCCCCC
Confidence            999 88 89999754

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-52  Score=390.09  Aligned_cols=254  Identities=27%  Similarity=0.377  Sum_probs=230.5

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ...+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|+|++++....  .. .  
T Consensus         4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~-~--   78 (259)
T PRK06688          4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP--PK-P--   78 (259)
T ss_pred             CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC--cc-h--
Confidence            346889999999999999999999999999999999999999999999999999999999999999876421  11 1  


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...+++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.. +.
T Consensus        79 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~  158 (259)
T PRK06688         79 PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAA  158 (259)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHH
Confidence            23455667888899999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|++++|+||+++||||+++|++++.+.                                                
T Consensus       159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~------------------------------------------------  190 (259)
T PRK06688        159 EMLLLGEPLSAEEALRIGLVNRVVPAAELDAE------------------------------------------------  190 (259)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHHHHHHH------------------------------------------------
Confidence            99999999999999999999999998766431                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.+++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|+++++++|
T Consensus       191 -------------------a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~af  248 (259)
T PRK06688        191 -------------------ADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATAF  248 (259)
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                               22358889999999999999999998888999999999999998887   99999999999


Q ss_pred             hcCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPF  363 (378)
Q Consensus       352 l~ek~r~P~~~~  363 (378)
                      + +| |+|+|++
T Consensus       249 ~-~~-~~p~~~~  258 (259)
T PRK06688        249 I-EK-RKPDFTG  258 (259)
T ss_pred             H-cC-CCCCCCC
Confidence            9 88 8999975

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-52  Score=389.22  Aligned_cols=255  Identities=25%  Similarity=0.339  Sum_probs=222.1

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      .++.+.+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....   .
T Consensus         4 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~---~   80 (262)
T PRK06144          4 TTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS---T   80 (262)
T ss_pred             ccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---c
Confidence            34566799999999999999999999999999999999999999999999999999998 7999999999875421   1


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccc-cCccCCcchHHHHhhcch
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~~g  187 (378)
                      .+....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG  160 (262)
T PRK06144         81 AEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLG  160 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhC
Confidence            1222234445677888899999999999999999999999999999999999999999996 999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      .. +++++++|++++|+||+++||||+|+|++++++.                                           
T Consensus       161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-------------------------------------------  197 (262)
T PRK06144        161 AARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDAR-------------------------------------------  197 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHH-------------------------------------------
Confidence            99 9999999999999999999999999998776431                                           


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                              +.+++++|++.||.+++.+|+.++......+    +.+.+.+..++.   ++|++|
T Consensus       198 ------------------------a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~---~~~~~e  246 (262)
T PRK06144        198 ------------------------ADALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYM---SEDFRE  246 (262)
T ss_pred             ------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhc---ChHHHH
Confidence                                    2236899999999999999999987655444    334556666666   999999


Q ss_pred             hHhhhhcCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPF  363 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~  363 (378)
                      |+.+|+ +| |+|.|.+
T Consensus       247 ~~~af~-~k-r~p~~~~  261 (262)
T PRK06144        247 GVEAFL-EK-RPPKWKG  261 (262)
T ss_pred             HHHHHh-cC-CCCCCCC
Confidence            999999 88 8999975

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-52  Score=388.08  Aligned_cols=254  Identities=22%  Similarity=0.326  Sum_probs=225.7

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +|+.|.++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.....  ....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~~~   78 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIK--GPGD   78 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccC--Cchh
Confidence            4667899999999999999998 699999999999999999999999999999999999999999998753211  1122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.   |+++++++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            23344556678888999999999999999999999999999999999999999999999996   4567899999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|+++|+.++|+||+++||||+++|++++.+.                                               
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~-----------------------------------------------  188 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPE-----------------------------------------------  188 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999998776432                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          +.+++++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|++||+++
T Consensus       189 --------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a  245 (257)
T PRK06495        189 --------------------AMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA  245 (257)
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                22368999999999999999999998888999999999998888887   9999999999


Q ss_pred             hhcCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPF  363 (378)
Q Consensus       351 fl~ek~r~P~~~~  363 (378)
                      |+ +| |+|+|++
T Consensus       246 f~-~k-r~p~~~~  256 (257)
T PRK06495        246 FL-EK-RPPVFKG  256 (257)
T ss_pred             Hh-cc-CCCCCCC
Confidence            99 88 8999975

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-52  Score=392.32  Aligned_cols=259  Identities=27%  Similarity=0.365  Sum_probs=226.2

Q ss_pred             CCceEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH-
Q 017069           33 CNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE-  110 (378)
Q Consensus        33 ~~~v~~~~~~-~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~-  110 (378)
                      ++.+.++.++ +|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......... 
T Consensus         4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06210          4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD   83 (272)
T ss_pred             cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccc
Confidence            4678999998 99999999999999999999999999999999999999999999999999999999875421100000 


Q ss_pred             -HHHHH----HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhc
Q 017069          111 -ECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       111 -~~~~~----~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                       ....+    ...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  163 (272)
T PRK06210         84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRL  163 (272)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhh
Confidence             00011    1123456778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      +|.. +++|++||+.++|+||+++||||+++|++++.+  +                                       
T Consensus       164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------  202 (272)
T PRK06210        164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELME--R---------------------------------------  202 (272)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--H---------------------------------------
Confidence            9999 999999999999999999999999999876642  2                                       


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhc-CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCc
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  343 (378)
                                                +.+++++|++. +|.++..+|+++++....++.++++.|...+..++.   ++|
T Consensus       203 --------------------------a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~  253 (272)
T PRK06210        203 --------------------------TLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RPD  253 (272)
T ss_pred             --------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---Ccc
Confidence                                      12357889985 999999999999998888999999999998888886   999


Q ss_pred             HHhhHhhhhcCCCCCCCCCC
Q 017069          344 FYEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       344 ~~egv~afl~ek~r~P~~~~  363 (378)
                      ++||+++|+ +| |+|.|.+
T Consensus       254 ~~egi~af~-~k-r~p~~~~  271 (272)
T PRK06210        254 FIEGVASFL-EK-RPPRFPG  271 (272)
T ss_pred             HHHHHHHHh-cc-CCCCCCC
Confidence            999999999 88 8999975

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=6.6e-52  Score=387.82  Aligned_cols=252  Identities=19%  Similarity=0.220  Sum_probs=215.4

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...  ....  
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~~~~--   76 (256)
T TIGR03210         1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--YDGR--   76 (256)
T ss_pred             CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--ccch--
Confidence            45688999999999999999999999999999999999999999999999999999 799999999987421  0111  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |
T Consensus        77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A  155 (256)
T TIGR03210        77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA  155 (256)
T ss_pred             -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence             11223356678889999999999999999999999999999999999999999999999998888899999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++++++|++++|+||+++||||+|+|++++++..                                              
T Consensus       156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------  189 (256)
T TIGR03210       156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV----------------------------------------------  189 (256)
T ss_pred             HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987764322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF-DECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~-~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           .+++++|++.||.+++.+|++++....... .+.  .|...+..++.   ++|++||+.
T Consensus       190 ---------------------~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~---~~d~~e~~~  243 (256)
T TIGR03210       190 ---------------------QKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYD---TAESREGVK  243 (256)
T ss_pred             ---------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHcc---ChhHHHHHH
Confidence                                 236899999999999999999987654321 111  23345555665   999999999


Q ss_pred             hhhcCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPF  363 (378)
Q Consensus       350 afl~ek~r~P~~~~  363 (378)
                      +|+ +| |+|+|++
T Consensus       244 af~-~k-r~p~~~~  255 (256)
T TIGR03210       244 AFQ-EK-RKPEFRK  255 (256)
T ss_pred             HHh-cc-CCCCCCC
Confidence            999 88 8999975

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=6.7e-52  Score=388.41  Aligned_cols=254  Identities=18%  Similarity=0.223  Sum_probs=217.7

Q ss_pred             CceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        34 ~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +.+.+++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   80 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSG   80 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhh
Confidence            4578888 899999999999999999999999999999999999999999999999 79999999997642100 01111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      . .. ..+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~-~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a  158 (259)
T TIGR01929        81 V-HR-LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA  158 (259)
T ss_pred             H-HH-HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence            1 11 1234677788999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|+++|++++|+||+++||||+|||++++.+.                                               
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~-----------------------------------------------  191 (259)
T TIGR01929       159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKE-----------------------------------------------  191 (259)
T ss_pred             HHHHHhCCccCHHHHHHcCCcccccCHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999998766432                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          +.+++++|++.||.+++.+|++++..... ....+..|.+.+...+.   ++|++|||++
T Consensus       192 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~---~~d~~egi~a  247 (259)
T TIGR01929       192 --------------------TVRWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYM---TEEGQEGRNA  247 (259)
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhc---CccHHHHHHH
Confidence                                22368999999999999999999976543 34455566677777776   9999999999


Q ss_pred             hhcCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPF  363 (378)
Q Consensus       351 fl~ek~r~P~~~~  363 (378)
                      |+ +| |+|+|++
T Consensus       248 f~-~k-r~p~~~~  258 (259)
T TIGR01929       248 FL-EK-RQPDFSK  258 (259)
T ss_pred             Hh-cc-CCCCCCC
Confidence            99 88 8999975

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=9e-52  Score=388.06  Aligned_cols=252  Identities=21%  Similarity=0.294  Sum_probs=221.3

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      +.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++....  .. .  
T Consensus         3 ~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~-~--   76 (261)
T PRK03580          3 ESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP-D--   76 (261)
T ss_pred             ceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc-h--
Confidence            45889999999999999995 6999999999999999999999999999999999 7999999999875321  11 1  


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        77 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~  156 (261)
T PRK03580         77 ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIAN  156 (261)
T ss_pred             hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            11112223456788899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|+.++|+||+++||||+|+|++++.+..                                               
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-----------------------------------------------  189 (261)
T PRK03580        157 EMVMTGRRMDAEEALRWGIVNRVVPQAELMDRA-----------------------------------------------  189 (261)
T ss_pred             HHHHhCCccCHHHHHHcCCCcEecCHhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999988764322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHccccCCCCcHHhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR----MSLQGVSRLISGDFYEG  347 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~----~~~~~~~~~~~~d~~eg  347 (378)
                                          .+++++|++.+|.+++.+|++++.....+++++++.|..    .+..++.   ++|++||
T Consensus       190 --------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~d~~e~  246 (261)
T PRK03580        190 --------------------RELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLH---SEDALEG  246 (261)
T ss_pred             --------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhc---CccHHHH
Confidence                                235889999999999999999998888889999998864    5566665   9999999


Q ss_pred             HhhhhcCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPF  363 (378)
Q Consensus       348 v~afl~ek~r~P~~~~  363 (378)
                      +++|+ +| |+|+|++
T Consensus       247 ~~af~-ek-r~~~~~~  260 (261)
T PRK03580        247 PRAFA-EK-RDPVWKG  260 (261)
T ss_pred             HHHHh-cC-CCCCCCC
Confidence            99999 88 8999975

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-51  Score=387.49  Aligned_cols=257  Identities=25%  Similarity=0.255  Sum_probs=225.7

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~   79 (262)
T PRK07509          1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL   79 (262)
T ss_pred             CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence            4678999999999999999999999999999999999999999999999999999999999999999875421 111111


Q ss_pred             HHH----HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcch
Q 017069          112 CKD----FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       112 ~~~----~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (378)
                      ...    ....+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g  159 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR  159 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence            111    1223455677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      .. +.++++||++++|+||+++||||+++++  +.+  +                                         
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~--~-----------------------------------------  194 (262)
T PRK07509        160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLA--A-----------------------------------------  194 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHH--H-----------------------------------------
Confidence            99 9999999999999999999999999953  221  1                                         


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                              +.+++++|++.+|.++..+|++++.....+++++++.|.+.+..++.   ++|++|
T Consensus       195 ------------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  247 (262)
T PRK07509        195 ------------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKI  247 (262)
T ss_pred             ------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHH
Confidence                                    12368899999999999999999998888899999999998888887   999999


Q ss_pred             hHhhhhcCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPF  363 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~  363 (378)
                      |+.+|+ +| |+|.|.+
T Consensus       248 ~~~af~-ek-r~p~~~~  262 (262)
T PRK07509        248 AVKAQM-KK-RAPKFLD  262 (262)
T ss_pred             HHHHHh-cC-CCCCCCC
Confidence            999999 88 8999964

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-51  Score=390.35  Aligned_cols=261  Identities=21%  Similarity=0.281  Sum_probs=222.4

Q ss_pred             CCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC---
Q 017069           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---  107 (378)
Q Consensus        32 ~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---  107 (378)
                      .++.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......   
T Consensus         7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   86 (276)
T PRK05864          7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT   86 (276)
T ss_pred             CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence            456688887 7899999999999999999999999999999999999999999999999999999999874211000   


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccC-CcchHHHHhhcc
Q 017069          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLP  186 (378)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~  186 (378)
                      ...........++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v  166 (276)
T PRK05864         87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI  166 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence            1111122334456778889999999999999999999999999999999999999999999999997 788999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHH
Q 017069          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (378)
Q Consensus       187 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (378)
                      |.. +.+|+++|++++|+||+++||||+|+|++++++..                                         
T Consensus       167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-----------------------------------------  205 (276)
T PRK05864        167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTC-----------------------------------------  205 (276)
T ss_pred             CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHH-----------------------------------------
Confidence            999 99999999999999999999999999987764322                                         


Q ss_pred             hcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HccccCCCCc
Q 017069          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSL-QGVSRLISGD  343 (378)
Q Consensus       266 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~-~~~~~~~~~d  343 (378)
                                                .+++++|+..||.+++.+|++++..... ++++.++.|..... ..+.   ++|
T Consensus       206 --------------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~~d  256 (276)
T PRK05864        206 --------------------------YAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---TAN  256 (276)
T ss_pred             --------------------------HHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---Chh
Confidence                                      2368999999999999999999987664 78888887765322 2344   999


Q ss_pred             HHhhHhhhhcCCCCCCCCCCC
Q 017069          344 FYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       344 ~~egv~afl~ek~r~P~~~~~  364 (378)
                      ++||+++|+ +| |+|+|.+.
T Consensus       257 ~~e~~~af~-~k-r~p~~~~~  275 (276)
T PRK05864        257 FEEAVAARA-EK-RPPVFTDD  275 (276)
T ss_pred             HHHHHHHHh-cc-CCCCCCCC
Confidence            999999999 88 89999764

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-51  Score=386.40  Aligned_cols=252  Identities=24%  Similarity=0.381  Sum_probs=225.3

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++++.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++............
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK07260          1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL   80 (255)
T ss_pred             CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence            35688899999999999999999999999999999999999999999999999999999999999987643222222222


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  160 (255)
T PRK07260         81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT  160 (255)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence            23444567788899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|+++|++++|+||+++||||+++|++++++..                                               
T Consensus       161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a-----------------------------------------------  193 (255)
T PRK07260        161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTC-----------------------------------------------  193 (255)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999987764322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                          .++++++++.+|.+++.+|+.++.....++++.++.|...+..++.   ++|++||+++|
T Consensus       194 --------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  250 (255)
T PRK07260        194 --------------------EQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAF  250 (255)
T ss_pred             --------------------HHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                                2358999999999999999999998888899999999998888887   99999999999


Q ss_pred             hcCC
Q 017069          352 MVDR  355 (378)
Q Consensus       352 l~ek  355 (378)
                      + +|
T Consensus       251 ~-~k  253 (255)
T PRK07260        251 S-ER  253 (255)
T ss_pred             H-hc
Confidence            9 77

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-51  Score=384.64  Aligned_cols=246  Identities=21%  Similarity=0.309  Sum_probs=220.7

Q ss_pred             CceEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        34 ~~v~~~-~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +.+.++ .+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    ....
T Consensus         6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~   81 (256)
T PRK06143          6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQAS   81 (256)
T ss_pred             ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chhh
Confidence            456677 4688999999999999999999999999999999999999999999999 799999999987532    1222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a  160 (256)
T PRK06143         82 AEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWART  160 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHH
Confidence            3345556677888999999999999999999999999999999999999999999999998 7888899999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++++++|+.++|+||+++||||+|||++++++..                                              
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------  194 (256)
T PRK06143        161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAV----------------------------------------------  194 (256)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987764322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .+++++++..||.+++.+|++++......+++.++.|...+...+.   ++|++||+++
T Consensus       195 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (256)
T PRK06143        195 ---------------------ERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMAA  250 (256)
T ss_pred             ---------------------HHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                 2368999999999999999999998888899999999999988887   9999999999


Q ss_pred             hhcCC
Q 017069          351 RMVDR  355 (378)
Q Consensus       351 fl~ek  355 (378)
                      |+ +|
T Consensus       251 f~-ek  254 (256)
T PRK06143        251 FL-NR  254 (256)
T ss_pred             HH-hh
Confidence            99 77

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-51  Score=391.49  Aligned_cols=259  Identities=22%  Similarity=0.279  Sum_probs=221.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC-----
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG-----  107 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~-----  107 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++.......     
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            456889999999999999999999999999999999999999999999999999999999999999875311000     


Q ss_pred             --------ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchH
Q 017069          108 --------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS  179 (378)
Q Consensus       108 --------~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~  179 (378)
                              .......+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~  162 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS  162 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence                    011112233334567888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhh
Q 017069          180 FYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH  258 (378)
Q Consensus       180 ~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (378)
                      ++|++++|.. +++|+++|++++|+||+++||||+|||++++.+  .+                                
T Consensus       163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~--~a--------------------------------  208 (296)
T PRK08260        163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLP--AA--------------------------------  208 (296)
T ss_pred             hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHH--HH--------------------------------
Confidence            9999999999 999999999999999999999999999876642  22                                


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhc-CchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHc
Q 017069          259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRF--QTFDECLVREYRMSLQG  335 (378)
Q Consensus       259 ~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~--~~~~~~l~~e~~~~~~~  335 (378)
                                                       .+++++|+++ +|.+++.+|++++....  .... ....|...+..+
T Consensus       209 ---------------------------------~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~  254 (296)
T PRK08260        209 ---------------------------------RALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSR  254 (296)
T ss_pred             ---------------------------------HHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHH
Confidence                                             2358889985 99999999999997642  2333 335577777777


Q ss_pred             cccCCCCcHHhhHhhhhcCCCCCCCCCCC
Q 017069          336 VSRLISGDFYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       336 ~~~~~~~d~~egv~afl~ek~r~P~~~~~  364 (378)
                      +.   ++|++||+.+|+ +| |+|.|+++
T Consensus       255 ~~---~~d~~egi~af~-~k-r~p~f~~~  278 (296)
T PRK08260        255 GR---SGDGKEGVSSFL-EK-RPAVFPGK  278 (296)
T ss_pred             cc---ChhHHHHHHHHh-cC-CCCCCCCC
Confidence            66   999999999999 88 89999987

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=3.5e-51  Score=386.23  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=219.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus        12 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   90 (273)
T PRK07396         12 YEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VDDDG   90 (273)
T ss_pred             CcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cchhh
Confidence            56789999999999999999999999999999999999999999999999999999 69999999998642100 01111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ... . ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        91 ~~~-~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         91 VPR-L-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhh-h-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            111 1 134567788999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|+++|+.++|+||+++||||+|||++++++..                                              
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a----------------------------------------------  202 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKET----------------------------------------------  202 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987764322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .+++++|++.+|.+++.+|++++.... ......+.|.+.+...+.   ++|++|||.+
T Consensus       203 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~a  257 (273)
T PRK07396        203 ---------------------VRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEAQEGRNA  257 (273)
T ss_pred             ---------------------HHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence                                 236899999999999999999987654 355455567777777666   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ +| |+|+|++.
T Consensus       258 f~-~k-r~p~~~~~  269 (273)
T PRK07396        258 FN-EK-RQPDFSKF  269 (273)
T ss_pred             Hh-CC-CCCCCCCC
Confidence            99 88 89999874

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=2.8e-51  Score=384.47  Aligned_cols=254  Identities=19%  Similarity=0.228  Sum_probs=222.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-C-CCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-G-RAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~-g-~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||. | ++||+|+|++++....  ..  
T Consensus         3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~--   77 (261)
T PRK11423          3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD--   77 (261)
T ss_pred             ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc--
Confidence            567899999999999999999999999999999999999999887 999999996 3 8999999999875321  11  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                       ...+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~  156 (261)
T PRK11423         78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI  156 (261)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence             123344566788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+++++|++++|+||+++||||+|||++++++.                                              
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~----------------------------------------------  190 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDF----------------------------------------------  190 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998776432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTF-DECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~-~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                           +.+++++|++.+|.+++.+|++++.... ... ...++.|.+.+..++.   ++|++||
T Consensus       191 ---------------------a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg  246 (261)
T PRK11423        191 ---------------------TLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEG  246 (261)
T ss_pred             ---------------------HHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHH
Confidence                                 2246899999999999999999986543 233 5778888888888886   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +.+|+ +| |+|+|+++
T Consensus       247 ~~af~-~k-r~p~~~~~  261 (261)
T PRK11423        247 MNAFL-EK-RKPVFVGH  261 (261)
T ss_pred             HHHHh-cc-CCCCCCCC
Confidence            99999 88 89999753

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-51  Score=379.30  Aligned_cols=247  Identities=25%  Similarity=0.344  Sum_probs=220.4

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...    .   ...+
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~----~---~~~~   74 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD----F---AIDL   74 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh----h---HHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999987531    1   1223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHh
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  195 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l  195 (378)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+.++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll  154 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV  154 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999966999999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHH
Q 017069          196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI  275 (378)
Q Consensus       196 tG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i  275 (378)
                      +|++++|+||+++||||++   +++.  .+                                                  
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~--~~--------------------------------------------------  179 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPL--SD--------------------------------------------------  179 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHH--HH--------------------------------------------------
Confidence            9999999999999999963   2332  12                                                  


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCC
Q 017069          276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR  355 (378)
Q Consensus       276 ~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek  355 (378)
                                     +.+++++|++.||.+++.+|++++......+++.++.|.+.+..++.   ++|++||+++|+ +|
T Consensus       180 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~k  240 (248)
T PRK06072        180 ---------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFK-EK  240 (248)
T ss_pred             ---------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHh-cC
Confidence                           22368999999999999999999988888899999999999888887   999999999999 88


Q ss_pred             CCCCCCCCC
Q 017069          356 DIAPKVPFH  364 (378)
Q Consensus       356 ~r~P~~~~~  364 (378)
                       |+|+|.++
T Consensus       241 -r~p~~~~~  248 (248)
T PRK06072        241 -REPKFKGI  248 (248)
T ss_pred             -CCCCCCCC
Confidence             89999864

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=6.2e-51  Score=379.89  Aligned_cols=246  Identities=21%  Similarity=0.276  Sum_probs=214.3

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++.+++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++..       .....+
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~   74 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM   74 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence            678889999999999997 699999999999999999999999999999999999999999987531       111223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|.. +++|+
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence            444567888899999999999999999999999999999999999999999999999987 4678999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++++|+||+++||||+|+|+.+ +   .+++                                              
T Consensus       154 ltg~~~~a~eA~~~Glv~~v~~~~~-~---~a~~----------------------------------------------  183 (251)
T TIGR03189       154 YSGRSIDGAEGARIGLANAVAEDPE-N---AALA----------------------------------------------  183 (251)
T ss_pred             HcCCCCCHHHHHHCCCcceecCcHH-H---HHHH----------------------------------------------
Confidence            9999999999999999999998532 1   1110                                              


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHccccCCCCcHHhhHhhhhc
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV-REYRMSLQGVSRLISGDFYEGVRARMV  353 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~-~e~~~~~~~~~~~~~~d~~egv~afl~  353 (378)
                                        .++++|++.||.+++.+|++++.....++++.+. .|...+..++.   ++|++||+++|+ 
T Consensus       184 ------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~-  241 (251)
T TIGR03189       184 ------------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMA---THDAVEGLNAFL-  241 (251)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhC---CHhHHHHHHHHH-
Confidence                              1258899999999999999999887778887663 67777777776   999999999999 


Q ss_pred             CCCCCCCCCC
Q 017069          354 DRDIAPKVPF  363 (378)
Q Consensus       354 ek~r~P~~~~  363 (378)
                      +| |+|.|.+
T Consensus       242 ek-r~p~~~~  250 (251)
T TIGR03189       242 EK-RPALWED  250 (251)
T ss_pred             hc-CCCCCCC
Confidence            88 8999975

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-50  Score=380.24  Aligned_cols=256  Identities=23%  Similarity=0.247  Sum_probs=225.6

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ....+.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ...+.
T Consensus         4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~   82 (260)
T PRK07827          4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDA   82 (260)
T ss_pred             CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhH
Confidence            44568899999999999999999999999999999999999999999999999999999999999998754210 11112


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHH
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE  191 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~  191 (378)
                      ...+...+.++++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++++..++
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~  162 (260)
T PRK07827         83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA  162 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence            23345566778899999999999999999999999999999999999999999999999999999999999998765599


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|+.++|+||+++||||+++++  +++.                                                
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~~--l~~~------------------------------------------------  192 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAADD--VDAA------------------------------------------------  192 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchHH--HHHH------------------------------------------------
Confidence            99999999999999999999998742  4321                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.+++++|++.+|.+++.+|+++++.....+++.++.|...+..++.   ++|+++|+++|
T Consensus       193 -------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af  250 (260)
T PRK07827        193 -------------------VAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAF  250 (260)
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                               22368899999999999999999998888899999999998888887   99999999999


Q ss_pred             hcCCCCCCCCC
Q 017069          352 MVDRDIAPKVP  362 (378)
Q Consensus       352 l~ek~r~P~~~  362 (378)
                      + +| |+|+|.
T Consensus       251 ~-~k-r~p~~~  259 (260)
T PRK07827        251 L-QK-RPPRWA  259 (260)
T ss_pred             h-cC-CCCCCC
Confidence            9 88 889995

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-50  Score=380.95  Aligned_cols=255  Identities=22%  Similarity=0.279  Sum_probs=221.8

Q ss_pred             CCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        32 ~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +.+.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ... 
T Consensus         7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~-   84 (265)
T PLN02888          7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-GDV-   84 (265)
T ss_pred             CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-chh-
Confidence            456778885 78999999999999999999999999999999999999999999999999999999998653211 111 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        .   ....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        85 --~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  159 (265)
T PLN02888         85 --K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR  159 (265)
T ss_pred             --h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence              1   1124556678899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +++|++||++++|+||+++||||+|||++++.+.                                              
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~----------------------------------------------  193 (265)
T PLN02888        160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKK----------------------------------------------  193 (265)
T ss_pred             HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998766432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|++.+|.+++.+|++++.....+++++++.|...+..++. ..++|++||++
T Consensus       194 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~~  251 (265)
T PLN02888        194 ---------------------AREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKMQ  251 (265)
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence                                 22368999999999999999999988888899999999887766641 13899999999


Q ss_pred             hhhcCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPF  363 (378)
Q Consensus       350 afl~ek~r~P~~~~  363 (378)
                      +|+ +| |+|+-.+
T Consensus       252 af~-ek-r~~~~~~  263 (265)
T PLN02888        252 EFI-AG-RSSKKPS  263 (265)
T ss_pred             HHH-hc-CCCCCCC
Confidence            999 88 7776443

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-51  Score=381.03  Aligned_cols=249  Identities=23%  Similarity=0.222  Sum_probs=215.6

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....   . ...
T Consensus         2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~---~-~~~   77 (254)
T PRK08259          2 SMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR---G-NRL   77 (254)
T ss_pred             CceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc---c-hhh
Confidence            456889999999999999999999999999999999999999999999999999999999999999875321   1 111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ...  ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|.. +.
T Consensus        78 ~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~  155 (254)
T PRK08259         78 HPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAM  155 (254)
T ss_pred             hhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence            100  011112233479999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|+.++|+||+++||||+|||++++.+..                                               
T Consensus       156 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-----------------------------------------------  188 (254)
T PRK08259        156 DLILTGRPVDADEALAIGLANRVVPKGQARAAA-----------------------------------------------  188 (254)
T ss_pred             HHHHcCCccCHHHHHHcCCCCEeeChhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999988774322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                          .+++++|++.||.+++.+|++++.....+++++++.|...+...+    .+|++||+++|
T Consensus       189 --------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~af  244 (254)
T PRK08259        189 --------------------EELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAARF  244 (254)
T ss_pred             --------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHHH
Confidence                                236899999999999999999998878889999999988766655    49999999999


Q ss_pred             hcCCCCCC
Q 017069          352 MVDRDIAP  359 (378)
Q Consensus       352 l~ek~r~P  359 (378)
                      + +|+|+|
T Consensus       245 ~-~~~~~~  251 (254)
T PRK08259        245 A-AGAGRH  251 (254)
T ss_pred             H-hhhccc
Confidence            9 664655

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.4e-51  Score=377.39  Aligned_cols=240  Identities=23%  Similarity=0.322  Sum_probs=215.1

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      +.++++++|++||||||++.|++|.+|+.+|.+++++++.+ ++++|||||.|++||+|+|+++...         ...+
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~   71 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF   71 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence            56788999999999999999999999999999999999865 8999999999999999999985210         1223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...+..+++++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            34456788889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++++|+||+++||||+|++   ++   ++                                                
T Consensus       152 ltg~~~~a~eA~~~Glv~~v~~---~~---~a------------------------------------------------  177 (243)
T PRK07854        152 LGAEKLTAEQALATGMANRIGT---LA---DA------------------------------------------------  177 (243)
T ss_pred             HcCCCcCHHHHHHCCCcccccC---HH---HH------------------------------------------------
Confidence            9999999999999999999965   21   11                                                


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                       .+++++|++.+|.+++.+|++++..  ..++++++.|...+..++.   ++|++||+++|+ +
T Consensus       178 -----------------~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~-~  234 (243)
T PRK07854        178 -----------------QAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARI-E  234 (243)
T ss_pred             -----------------HHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh-C
Confidence                             1358899999999999999999875  5689999999998888887   999999999999 8


Q ss_pred             CCCCCCCCC
Q 017069          355 RDIAPKVPF  363 (378)
Q Consensus       355 k~r~P~~~~  363 (378)
                      | |+|.|++
T Consensus       235 k-r~p~~~~  242 (243)
T PRK07854        235 K-RPPKFQG  242 (243)
T ss_pred             C-CCCCCCC
Confidence            8 8999975

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.9e-50  Score=378.36  Aligned_cols=252  Identities=30%  Similarity=0.431  Sum_probs=224.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      +..+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..   .......
T Consensus         4 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~~   80 (257)
T COG1024           4 YETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNAA   80 (257)
T ss_pred             CCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhHH
Confidence            4578888989999999999999999999999999999999999999999999999999999999999874   1112222


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +.
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          81 ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            25666777899999999999999999999999999999999999999999999999999999889999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      +|++||+.++|+||+++|||++++++ +++.+...                                             
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~---------------------------------------------  195 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERAL---------------------------------------------  195 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999986 45543222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++++. +|.++..+|+.++......+++.+..|...+...+.   ++|++||+++
T Consensus       196 ----------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~eg~~a  249 (257)
T COG1024         196 ----------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS---SEDFREGVRA  249 (257)
T ss_pred             ----------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence                                  24566666 999999999999998777799999999988887665   9999999999


Q ss_pred             hhcCCCCCCCC
Q 017069          351 RMVDRDIAPKV  361 (378)
Q Consensus       351 fl~ek~r~P~~  361 (378)
                      |+ +  |+|.|
T Consensus       250 ~~-~--r~p~~  257 (257)
T COG1024         250 FL-E--RKPVF  257 (257)
T ss_pred             HH-c--cCCCC
Confidence            99 6  79988

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-51  Score=379.05  Aligned_cols=246  Identities=22%  Similarity=0.332  Sum_probs=219.6

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .   
T Consensus         1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~---   76 (249)
T PRK05870          1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-P---   76 (249)
T ss_pred             CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc-c---
Confidence            345688999999999999999999999999999999999999999999999999999999999999987642111 1   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ....+..+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            122344456677789999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      +++++||++++|+||+++||||+++  +++.+  +                                             
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~--~---------------------------------------------  187 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVA--A---------------------------------------------  187 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHH--H---------------------------------------------
Confidence            9999999999999999999999999  44532  1                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                          +.+++++|++.+|.+++.+|++++.... .+++++++.|.+.+...+.   ++|++||++
T Consensus       188 --------------------a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~  244 (249)
T PRK05870        188 --------------------ALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLA  244 (249)
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence                                1236899999999999999999998877 7899999999999888887   999999999


Q ss_pred             hhhcC
Q 017069          350 ARMVD  354 (378)
Q Consensus       350 afl~e  354 (378)
                      +|+ +
T Consensus       245 af~-~  248 (249)
T PRK05870        245 AAQ-R  248 (249)
T ss_pred             HHh-c
Confidence            998 5

>PLN02921 naphthoate synthase

Probab=100.00  E-value=2.9e-50  Score=387.06  Aligned_cols=259  Identities=18%  Similarity=0.223  Sum_probs=219.0

Q ss_pred             CCCceEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 017069           32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        32 ~~~~v~~~~--~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      .++.|.++.  +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ...
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~~~  141 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-YVG  141 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-ccc
Confidence            577889988  589999999999999999999999999999999999999999999999 8999999999764210 011


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ......+  ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~  219 (327)
T PLN02921        142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ  219 (327)
T ss_pred             hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            1111111  12456778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +++|+++|+.++|+||+++||||+|+|++++++..                                           
T Consensus       220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a-------------------------------------------  256 (327)
T PLN02921        220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGET-------------------------------------------  256 (327)
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHH-------------------------------------------
Confidence            9 99999999999999999999999999987764322                                           


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              .+++++|++++|.+++.+|++++..... .....+.+...+..++.   ++|++||
T Consensus       257 ------------------------~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~eg  308 (327)
T PLN02921        257 ------------------------VKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYG---SEEGNEG  308 (327)
T ss_pred             ------------------------HHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                    2368999999999999999999987543 33333334456666665   9999999


Q ss_pred             HhhhhcCCCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFHLS  366 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~~~  366 (378)
                      +++|+ +| |+|.|.+.+.
T Consensus       309 i~Af~-ek-r~p~f~~~~~  325 (327)
T PLN02921        309 RTAYL-EG-RAPDFSKFPR  325 (327)
T ss_pred             HHHHh-cc-CCCCCCCCCC
Confidence            99999 88 8999987543

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-50  Score=376.66  Aligned_cols=245  Identities=22%  Similarity=0.288  Sum_probs=216.2

Q ss_pred             CceEEEeeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        34 ~~v~~~~~~~---v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +.|.++.+++   |++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.....  .. 
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~-   79 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM--GG-   79 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc--cc-
Confidence            3588888774   99999999999999999999999999999999999999999999999999999998753211  11 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        ..+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~  157 (251)
T PRK06023         80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR  157 (251)
T ss_pred             --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence              11223445678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+++++|+.++|+||+++||||+|||++++++.                                              
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~----------------------------------------------  191 (251)
T PRK06023        158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE----------------------------------------------  191 (251)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998776432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|++.+|.+++.+|++++... ..+.+.++.|.+.+..++.   ++|++||++
T Consensus       192 ---------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~  246 (251)
T PRK06023        192 ---------------------TLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFE  246 (251)
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                 123689999999999999999998764 4688888888888888876   999999999


Q ss_pred             hhhcCC
Q 017069          350 ARMVDR  355 (378)
Q Consensus       350 afl~ek  355 (378)
                      +|+ +|
T Consensus       247 af~-e~  251 (251)
T PRK06023        247 AFM-RR  251 (251)
T ss_pred             HHh-cC
Confidence            999 54

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=1.7e-50  Score=376.26  Aligned_cols=244  Identities=30%  Similarity=0.481  Sum_probs=227.7

Q ss_pred             EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHH
Q 017069           37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF  116 (378)
Q Consensus        37 ~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~  116 (378)
                      .|+.+++|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.|++||+|.|++++...    ..+....+.
T Consensus         1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~   76 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF   76 (245)
T ss_dssp             EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence            4789999999999999989999999999999999999999999999999999999999999998764    345566788


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHh
Q 017069          117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL  195 (378)
Q Consensus       117 ~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~l  195 (378)
                      ..++.++.++..+||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|+|++|.. +.++++
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l  156 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL  156 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHH
Q 017069          196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI  275 (378)
Q Consensus       196 tG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i  275 (378)
                      +|++++|+||+++||||+|+|++++.+..                                                   
T Consensus       157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a---------------------------------------------------  185 (245)
T PF00378_consen  157 TGEPISAEEALELGLVDEVVPDEELDEEA---------------------------------------------------  185 (245)
T ss_dssp             HTCEEEHHHHHHTTSSSEEESGGGHHHHH---------------------------------------------------
T ss_pred             ccccchhHHHHhhcceeEEcCchhhhHHH---------------------------------------------------
Confidence            99999999999999999999998874322                                                   


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCC
Q 017069          276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR  355 (378)
Q Consensus       276 ~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek  355 (378)
                                      .++++++++.+|.+++.+|+.+++.....+.+.++.|...+..++.   ++|++||+++|+ ||
T Consensus       186 ----------------~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~f~-eK  245 (245)
T PF00378_consen  186 ----------------LELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEGIAAFL-EK  245 (245)
T ss_dssp             ----------------HHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH-TT
T ss_pred             ----------------HHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHh-Cc
Confidence                            2368999999999999999999999888899999999999999997   999999999999 76

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-50  Score=383.35  Aligned_cols=259  Identities=20%  Similarity=0.224  Sum_probs=216.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhh-HHHh---h-ccC
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS-LYHF---M-NQG  107 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~-~~~~---~-~~~  107 (378)
                      ++.+.++.+++|++||||||++.|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|+++ +...   . ...
T Consensus         4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~   83 (298)
T PRK12478          4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG   83 (298)
T ss_pred             ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence            4568899999999999999999999999999999999999999999999999999999999999986 2110   0 000


Q ss_pred             ChHHHHHH---HH---HHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccccc-CccCCcchHH
Q 017069          108 KLEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASF  180 (378)
Q Consensus       108 ~~~~~~~~---~~---~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~g~~~  180 (378)
                      .......+   ..   ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++  ++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~  161 (298)
T PRK12478         84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW  161 (298)
T ss_pred             ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence            00001111   01   11235667889999999999999999999999999999999999999999997 8875  3333


Q ss_pred             HHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhH
Q 017069          181 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  259 (378)
Q Consensus       181 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (378)
                       + +++|.. |++|++||++++|+||+++||||+|||++++++...                                  
T Consensus       162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------  205 (298)
T PRK12478        162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVA----------------------------------  205 (298)
T ss_pred             -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------
Confidence             2 458998 999999999999999999999999999887753222                                  


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcccc
Q 017069          260 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSR  338 (378)
Q Consensus       260 ~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~  338 (378)
                                                       +++++|+..||.+++.+|++++.... .+++++++.|...+..++. 
T Consensus       206 ---------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~-  251 (298)
T PRK12478        206 ---------------------------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN-  251 (298)
T ss_pred             ---------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc-
Confidence                                             36889999999999999999998766 4699999999999988887 


Q ss_pred             CCCCcHH--------hhHhhhhcCCCCCCCCCCCCCC
Q 017069          339 LISGDFY--------EGVRARMVDRDIAPKVPFHLSL  367 (378)
Q Consensus       339 ~~~~d~~--------egv~afl~ek~r~P~~~~~~~~  367 (378)
                        ++|++        ||+++|+ +| |+|+|.+-...
T Consensus       252 --s~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~~~  284 (298)
T PRK12478        252 --TPDALEFIRTAETQGVRAAV-ER-RDGPFGDYSQA  284 (298)
T ss_pred             --ChhHHHHHHHHHHHHHHHHH-Hh-cCCcccccCcC
Confidence              99997        5999999 88 99999986333

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.7e-50  Score=371.89  Aligned_cols=242  Identities=20%  Similarity=0.201  Sum_probs=212.7

Q ss_pred             EeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHH
Q 017069           39 EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (378)
Q Consensus        39 ~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (378)
                      +++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ........+...
T Consensus         7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~   82 (249)
T PRK07938          7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG   82 (249)
T ss_pred             ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence            457899999999997 5999999999999999999999999999999999999999999987531   111222223344


Q ss_pred             HHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcC
Q 017069          119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG  197 (378)
Q Consensus       119 ~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG  197 (378)
                      +..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|.. +.+|+++|
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg  159 (249)
T PRK07938         83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA  159 (249)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence            5667888999999999999999999999999999999999999999999999985   5567899999999 99999999


Q ss_pred             CCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHH
Q 017069          198 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID  277 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~  277 (378)
                      +.++|+||+++||||+|||++++++.                                                      
T Consensus       160 ~~~~a~eA~~~Glv~~vv~~~~l~~~------------------------------------------------------  185 (249)
T PRK07938        160 ATITAAELHHFGSVEEVVPRDQLDEA------------------------------------------------------  185 (249)
T ss_pred             CcCCHHHHHHCCCccEEeCHHHHHHH------------------------------------------------------
Confidence            99999999999999999998776432                                                      


Q ss_pred             HHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCCCC
Q 017069          278 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDI  357 (378)
Q Consensus       278 ~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek~r  357 (378)
                                   +.+++++|+..+|.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|+ +| |
T Consensus       186 -------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~-ek-r  247 (249)
T PRK07938        186 -------------ALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFV-EK-R  247 (249)
T ss_pred             -------------HHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHH-hc-C
Confidence                         22368999999999999999999988788899999999888888776   999999999999 88 6


Q ss_pred             CC
Q 017069          358 AP  359 (378)
Q Consensus       358 ~P  359 (378)
                      +|
T Consensus       248 ~p  249 (249)
T PRK07938        248 KA  249 (249)
T ss_pred             CC
Confidence            66

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.2e-49  Score=372.24  Aligned_cols=251  Identities=16%  Similarity=0.157  Sum_probs=217.4

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++  +++++|||+|.|++||+|+|++++......  ....
T Consensus         3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~--~~~~   78 (255)
T PRK07112          3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA--GRAD   78 (255)
T ss_pred             CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc--chhh
Confidence            456899999999999999999999999999999999999998  369999999999999999999987542111  1111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ......+..+++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| ..+|++++|.. ++
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~  157 (255)
T PRK07112         79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH  157 (255)
T ss_pred             hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence            11223345788889999999999999999999999999999999999999999999999999865 46799999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|++++|+||+++||||+|+|+++..  ..                                              
T Consensus       158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~--~~----------------------------------------------  189 (255)
T PRK07112        158 YMTLMTQPVTAQQAFSWGLVDAYGANSDTL--LR----------------------------------------------  189 (255)
T ss_pred             HHHHhCCcccHHHHHHcCCCceecCcHHHH--HH----------------------------------------------
Confidence            999999999999999999999999865421  11                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++.+|.+++.+|++++.. ...+.+.++.|.+....++.   ++|++||+.+|
T Consensus       190 ---------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af  244 (255)
T PRK07112        190 ---------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARY  244 (255)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHH
Confidence                                 257899999999999999999875 45688999999988888887   99999999999


Q ss_pred             hcCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPF  363 (378)
Q Consensus       352 l~ek~r~P~~~~  363 (378)
                      + +| |+|.|..
T Consensus       245 ~-~k-r~p~~~~  254 (255)
T PRK07112        245 V-ET-GKFPWEA  254 (255)
T ss_pred             H-cC-CCCCCCC
Confidence            9 88 8999975

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=7e-50  Score=377.87  Aligned_cols=255  Identities=20%  Similarity=0.244  Sum_probs=223.3

Q ss_pred             CccccCCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC--CCcccCCChhhHHHh
Q 017069           27 SVTDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHF  103 (378)
Q Consensus        27 ~~~~~~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g--~~F~~G~Dl~~~~~~  103 (378)
                      |+.+.+.+.|.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|  ++||+|.|++++...
T Consensus         4 ~~~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~   82 (278)
T PLN03214          4 PSPPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP   82 (278)
T ss_pred             CCCCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc
Confidence            44556777899998 6899999999985 7999999999999999999999999999999997  699999999987531


Q ss_pred             hccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCc-cCCcchHHHH
Q 017069          104 MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYL  182 (378)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l  182 (378)
                        ....+....+......++.++..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l  160 (278)
T PLN03214         83 --KTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFM  160 (278)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHH
Confidence              1111222233333456778899999999999999999999999999999999999999999999999 5999999999


Q ss_pred             hhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHH
Q 017069          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (378)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (378)
                      ++++|.. +++|++||+.++|+||+++||||+|||++++.+  .                                    
T Consensus       161 ~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~--~------------------------------------  202 (278)
T PLN03214        161 GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALME--A------------------------------------  202 (278)
T ss_pred             HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHH--H------------------------------------
Confidence            9999999 999999999999999999999999999876642  2                                    


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCC
Q 017069          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (378)
Q Consensus       262 ~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  341 (378)
                                                   +.+++++|++.+|.+++.+|+++++.....++++++.|.+.+...+.   +
T Consensus       203 -----------------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s  250 (278)
T PLN03214        203 -----------------------------AASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLS---E  250 (278)
T ss_pred             -----------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---C
Confidence                                         22368899999999999999999988888899999999988888776   9


Q ss_pred             CcHHhhHhhhhcCC
Q 017069          342 GDFYEGVRARMVDR  355 (378)
Q Consensus       342 ~d~~egv~afl~ek  355 (378)
                      +|++||+++|+ +|
T Consensus       251 ~d~~egi~afl-ek  263 (278)
T PLN03214        251 PSIIKALGGVM-ER  263 (278)
T ss_pred             HHHHHHHHHHH-HH
Confidence            99999999999 76

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=2e-49  Score=378.93  Aligned_cols=259  Identities=16%  Similarity=0.185  Sum_probs=218.0

Q ss_pred             CCceEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCChhhHHHh
Q 017069           33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYHF  103 (378)
Q Consensus        33 ~~~v~~~~--~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-------~~F~~G~Dl~~~~~~  103 (378)
                      +.++.+++  +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|       ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            44688888  899999999999999999999999999999999999999999999998       599999999875321


Q ss_pred             h---ccCCh-H--HHHHH-HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEe-CceEEeccccccCccCC
Q 017069          104 M---NQGKL-E--ECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD  175 (378)
Q Consensus       104 ~---~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~  175 (378)
                      .   ..... .  ..... ......+...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0   00000 0  00011 1112346677889999999999999999999999999999999 69999999999999999


Q ss_pred             cchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCc
Q 017069          176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN  254 (378)
Q Consensus       176 ~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (378)
                      +|++++|++++|.. +++|++||+.++|+||+++||||++||++++++..                              
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a------------------------------  231 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA------------------------------  231 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHH------------------------------
Confidence            99999999999999 99999999999999999999999999987764322                              


Q ss_pred             hhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 017069          255 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ  334 (378)
Q Consensus       255 ~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~  334 (378)
                                                           .+++++|++.+|.+++.+|++++.... ...+....|.+.+..
T Consensus       232 -------------------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~  273 (302)
T PRK08321        232 -------------------------------------LEWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL  273 (302)
T ss_pred             -------------------------------------HHHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence                                                 236899999999999999999987654 344445567777777


Q ss_pred             ccccCCCCcHHhhHhhhhcCCCCCCCCCCC
Q 017069          335 GVSRLISGDFYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       335 ~~~~~~~~d~~egv~afl~ek~r~P~~~~~  364 (378)
                      ++.   ++|+++|+.+|+ +| |+|.|.+.
T Consensus       274 ~~~---~~d~~egi~af~-ek-r~p~~~~~  298 (302)
T PRK08321        274 AYM---TDEAQEGRDAFL-EK-RDPDWSDF  298 (302)
T ss_pred             Hhc---CHHHHHHHHHHh-cc-CCCCCCCC
Confidence            776   999999999999 88 89999875

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.6e-48  Score=363.47  Aligned_cols=244  Identities=19%  Similarity=0.227  Sum_probs=219.8

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++..+.++.+++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|++||+|.|++++....  .. . 
T Consensus         3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~-~-   78 (249)
T PRK07110          3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ--TG-K-   78 (249)
T ss_pred             CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc--ch-h-
Confidence            4667889999999999999999999999999999999999999999999999999999999999999875421  11 1 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       ..+. . +.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence             1122 2 5678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .++++||++++|+||+++||||+|+|++++.+  +                                             
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------  188 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLE--K---------------------------------------------  188 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHH--H---------------------------------------------
Confidence            99999999999999999999999999877643  2                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          +.++++++++.||.+++.+|+.++......+++.++.|...+...+.   ++|++|||++
T Consensus       189 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~  245 (249)
T PRK07110        189 --------------------ALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIES  245 (249)
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence                                12358999999999999999999998888999999999999998887   9999999997


Q ss_pred             hh
Q 017069          351 RM  352 (378)
Q Consensus       351 fl  352 (378)
                      .-
T Consensus       246 ~~  247 (249)
T PRK07110        246 LY  247 (249)
T ss_pred             hc
Confidence            64

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-48  Score=362.34  Aligned_cols=232  Identities=23%  Similarity=0.270  Sum_probs=209.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    .....
T Consensus         3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~~~~   78 (258)
T PRK06190          3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD----GSAYG   78 (258)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cchhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999987532    11111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                       . ...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 -~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         79 -A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             -H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence             1 23356778889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||++++|+||+++||||+++|++++++  .                                              
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~--~----------------------------------------------  188 (258)
T PRK06190        157 RMSLTGDFLDAADALRAGLVTEVVPHDELLP--R----------------------------------------------  188 (258)
T ss_pred             HHHHhCCccCHHHHHHcCCCeEecCHhHHHH--H----------------------------------------------
Confidence            9999999999999999999999999877643  2                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccc
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  337 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  337 (378)
                                         +.+++++|++.+|.+++.+|++++.....++++.++.|...+...+.
T Consensus       189 -------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~  235 (258)
T PRK06190        189 -------------------ARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNR  235 (258)
T ss_pred             -------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHc
Confidence                               22368999999999999999999998888999999999999988886

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=6.1e-47  Score=383.39  Aligned_cols=253  Identities=14%  Similarity=0.074  Sum_probs=221.9

Q ss_pred             eEEEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCCCC-cccCCChhhH
Q 017069           36 VLVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSGRA-FCAGGDIVSL  100 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vvl~g~g~~-F~~G~Dl~~~  100 (378)
                      +.++++++|++||||||++.             |+|+.+|+.+|.+++.+++. |+++++|||||.|+. ||+|+|++..
T Consensus       260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~  339 (546)
T TIGR03222       260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE  339 (546)
T ss_pred             EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence            44566889999999999999             99999999999999999984 599999999999987 9999999832


Q ss_pred             HHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cceeechh-hcccccCCeEEE-------eCceEEeccccccC
Q 017069          101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATPETLIG  171 (378)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~pe~~~G  171 (378)
                      .    ..+.......+...+.++.+|..+||||||+| ||+|+||| ++|+++||+||+       +++++|++||+++|
T Consensus       340 ~----~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG  415 (546)
T TIGR03222       340 A----HKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG  415 (546)
T ss_pred             c----cccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence            1    11111112233344567889999999999999 89999999 999999999999       89999999999999


Q ss_pred             ccCCcchHHHHhhcc-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhcc
Q 017069          172 FHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD  247 (378)
Q Consensus       172 l~p~~g~~~~l~r~~-g~~-a--~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  247 (378)
                      ++|++|++++|++++ |.. +  .++++||+.++|+||+++|||++|+|++++++...                      
T Consensus       416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~----------------------  473 (546)
T TIGR03222       416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIR----------------------  473 (546)
T ss_pred             cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHH----------------------
Confidence            999999999999998 887 7  55999999999999999999999999988753222                      


Q ss_pred             ccCCCCchhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHH-HH
Q 017069          248 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LV  326 (378)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~  326 (378)
                                                                   +++++|+++||.+++.+|++++.....+++++ +.
T Consensus       474 ---------------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  508 (546)
T TIGR03222       474 ---------------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFG  508 (546)
T ss_pred             ---------------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence                                                         36899999999999999999999999999999 99


Q ss_pred             HHHHHHHHccccCCCCcHHh---hHhhhhcCCCCCCCCCCC
Q 017069          327 REYRMSLQGVSRLISGDFYE---GVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       327 ~e~~~~~~~~~~~~~~d~~e---gv~afl~ek~r~P~~~~~  364 (378)
                      .|...+..++.   ++|.+|   |+++|+ || |+|+|+-+
T Consensus       509 ~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~p~f~~~  544 (546)
T TIGR03222       509 RLTAWQNWIFN---RPNAVGENGALKVYG-SG-KKAQFDME  544 (546)
T ss_pred             HHHHHHHHHhc---CCcccchhhHHHHHc-cC-CCCCCCcc
Confidence            99999999997   999999   999999 88 89999753

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.1e-46  Score=382.85  Aligned_cols=257  Identities=15%  Similarity=0.066  Sum_probs=223.0

Q ss_pred             CCCceEEE--eeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCC-CCcccC
Q 017069           32 LCNQVLVE--GKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSG-RAFCAG   94 (378)
Q Consensus        32 ~~~~v~~~--~~~~v~~Itln~p~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vvl~g~g-~~F~~G   94 (378)
                      .|+.|.++  ++++|++||||||++.             |+|+.+|+.+|.+++++++. |+++++|||||.| +.||+|
T Consensus       258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG  337 (550)
T PRK08184        258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA  337 (550)
T ss_pred             eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence            45445554  4689999999999988             68999999999999999986 7999999999999 599999


Q ss_pred             CChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-ceeechh-hcccccCCeEEEe-------CceEEec
Q 017069           95 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFAT  165 (378)
Q Consensus        95 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~  165 (378)
                      +|++... .   .+..........+..++.++..+||||||+|| |+|+||| ++|+++||+|||+       ++++|++
T Consensus       338 ~Dl~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~  413 (550)
T PRK08184        338 ADATLLA-H---KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL  413 (550)
T ss_pred             CChhhhc-c---cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence            9987321 1   11111122334455678889999999999997 9999999 9999999999999       9999999


Q ss_pred             cccccCccCCcchHHHHhhc-chHH-HHHH--HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHH
Q 017069          166 PETLIGFHPDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEAC  241 (378)
Q Consensus       166 pe~~~Gl~p~~g~~~~l~r~-~g~~-a~~l--~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~  241 (378)
                      ||+++|++|++|++++|+++ +|.. |+++  ++||++++|+||+++||||+|+|++++++...                
T Consensus       414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------  477 (550)
T PRK08184        414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVR----------------  477 (550)
T ss_pred             ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHH----------------
Confidence            99999999999999999998 6998 8887  58999999999999999999999888754222                


Q ss_pred             HHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCH
Q 017069          242 LEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF  321 (378)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~  321 (378)
                                                                         +++++|++.||.+++.+|++++.....++
T Consensus       478 ---------------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~  506 (550)
T PRK08184        478 ---------------------------------------------------IALEERASLSPDALTGMEANLRFAGPETM  506 (550)
T ss_pred             ---------------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Confidence                                                               36899999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHccccCCCCcHHh---hHhhhhcCCCCCCCCCCC
Q 017069          322 DEC-LVREYRMSLQGVSRLISGDFYE---GVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       322 ~~~-l~~e~~~~~~~~~~~~~~d~~e---gv~afl~ek~r~P~~~~~  364 (378)
                      +++ +.+|.+.+..++.   ++|.+|   |+++|+ +| |+|+|.+.
T Consensus       507 ~~~~~~~e~~~~~~~~~---~~d~~e~~~g~~af~-ek-r~~~f~~~  548 (550)
T PRK08184        507 ETRIFGRLTAWQNWIFQ---RPNAVGEKGALKVYG-TG-QKAQFDWN  548 (550)
T ss_pred             HHHHHHHHHHHHHHHhc---CCcccccchHHHHhc-cC-CCCCCCCC
Confidence            999 9999999999887   999999   999999 88 99999864

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.9e-46  Score=341.36  Aligned_cols=215  Identities=20%  Similarity=0.279  Sum_probs=189.4

Q ss_pred             CCCceEEEee-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhcc
Q 017069           32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (378)
Q Consensus        32 ~~~~v~~~~~-----~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (378)
                      +++.|.++..     ++|++||||||++ |+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...   
T Consensus         1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---   76 (222)
T PRK05869          1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL---   76 (222)
T ss_pred             CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc---
Confidence            3556666655     7899999999985 999999999999999999999999999999999999999999987532   


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcc
Q 017069          107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (378)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (378)
                       ...........+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++
T Consensus        77 -~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i  155 (222)
T PRK05869         77 -SAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA  155 (222)
T ss_pred             -ChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence             1122223344567788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHH
Q 017069          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (378)
Q Consensus       187 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (378)
                      |.. +++++++|++++|+||+++||||+++|++++.+                                           
T Consensus       156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~-------------------------------------------  192 (222)
T PRK05869        156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYD-------------------------------------------  192 (222)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHH-------------------------------------------
Confidence            999 999999999999999999999999999877643                                           


Q ss_pred             hcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Q 017069          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF  318 (378)
Q Consensus       266 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~  318 (378)
                                              .+.+++++|++.+|.+++.+|+++++..+
T Consensus       193 ------------------------~a~~~a~~ia~~~~~a~~~~K~~~~~~~~  221 (222)
T PRK05869        193 ------------------------AAAAWARRFLDGPPHALAAAKAGISDVYE  221 (222)
T ss_pred             ------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence                                    22246899999999999999999987653

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8e-45  Score=343.35  Aligned_cols=248  Identities=16%  Similarity=0.178  Sum_probs=202.1

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecC-CCCcccCCChhhHHHhhccC
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQG  107 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~  107 (378)
                      -.|.++.+++|++|||| |++.|+||.+|+.+|.+++++++.     |+++++|||+|. |++||+|+|++++.......
T Consensus        17 ~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~   95 (287)
T PRK08788         17 LRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAG   95 (287)
T ss_pred             eEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcccc
Confidence            34566678899999996 889999999999999999999998     899999999999 79999999999875321111


Q ss_pred             ChHHHHHHHHHHHHHHHHHh---cCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhh
Q 017069          108 KLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  184 (378)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~---~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (378)
                      .......+...+...+.++.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~  175 (287)
T PRK08788         96 DRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR  175 (287)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence            11111222222333333333   799999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHH
Q 017069          185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  263 (378)
Q Consensus       185 ~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (378)
                      ++|.. +++|++||+.++|+||+++||||+++|++++++...                                      
T Consensus       176 ~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~--------------------------------------  217 (287)
T PRK08788        176 RVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR--------------------------------------  217 (287)
T ss_pred             HhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH--------------------------------------
Confidence            99999 999999999999999999999999999887643222                                      


Q ss_pred             HHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCc
Q 017069          264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (378)
Q Consensus       264 ~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  343 (378)
                                                   +++++|++. |.+....|+..+.....++.+.++.|......+++  ..+.
T Consensus       218 -----------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  265 (287)
T PRK08788        218 -----------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ--LEEK  265 (287)
T ss_pred             -----------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh--cccc
Confidence                                         357888876 77777777777766667889999998888776665  2555


Q ss_pred             HHhhHhhhh
Q 017069          344 FYEGVRARM  352 (378)
Q Consensus       344 ~~egv~afl  352 (378)
                      -.+-|..|.
T Consensus       266 ~~~~~~~~~  274 (287)
T PRK08788        266 DLRTMERLV  274 (287)
T ss_pred             cHHHHHHHH
Confidence            677777776

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-45  Score=347.24  Aligned_cols=235  Identities=21%  Similarity=0.260  Sum_probs=200.8

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-c-----
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q-----  106 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~-----  106 (378)
                      ++.+.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .     
T Consensus         3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   82 (288)
T PRK08290          3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ   82 (288)
T ss_pred             CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence            4568999999999999999999999999999999999999999999999999999999999999998632110 0     


Q ss_pred             -----------CC-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccC
Q 017069          107 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP  174 (378)
Q Consensus       107 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p  174 (378)
                                 .. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~  161 (288)
T PRK08290         83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P  161 (288)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence                       00 0011112234456778889999999999999999999999999999999999999999999998 4


Q ss_pred             CcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCC
Q 017069          175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  253 (378)
Q Consensus       175 ~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (378)
                      + ++.+++++++|.. +++|++||+.++|+||+++||||++||++++++.                              
T Consensus       162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~------------------------------  210 (288)
T PRK08290        162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAE------------------------------  210 (288)
T ss_pred             c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHH------------------------------
Confidence            4 4567789999999 9999999999999999999999999998776432                              


Q ss_pred             chhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 017069          254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMS  332 (378)
Q Consensus       254 ~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~  332 (378)
                                                           +.+++++|++.+|.+++.+|++++..... +++++++.|....
T Consensus       211 -------------------------------------a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T PRK08290        211 -------------------------------------TLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLH  253 (288)
T ss_pred             -------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence                                                 22368999999999999999999988765 6999999998888


Q ss_pred             HHcc
Q 017069          333 LQGV  336 (378)
Q Consensus       333 ~~~~  336 (378)
                      ...+
T Consensus       254 ~~~~  257 (288)
T PRK08290        254 QLGH  257 (288)
T ss_pred             HHcc
Confidence            7766

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=7.7e-46  Score=321.78  Aligned_cols=260  Identities=22%  Similarity=0.282  Sum_probs=235.5

Q ss_pred             CCceEEEe----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccC
Q 017069           33 CNQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG  107 (378)
Q Consensus        33 ~~~v~~~~----~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~  107 (378)
                      ..+|.+++    +.||.+|-||||.+.|+|+.-|+.+|.++++.+..|+.+++|+|.+.- +.||+|+||++...    .
T Consensus        26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~----M  101 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKT----M  101 (291)
T ss_pred             CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhc----C
Confidence            34566654    458999999999999999999999999999999999999999999975 89999999999764    3


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcch
Q 017069          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (378)
                      +..+...|...+..++..+..+|.||||+|+|.|+|||++++++||+|+|+++++|+++|.+++++|++|++++|+|.+|
T Consensus       102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg  181 (291)
T KOG1679|consen  102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG  181 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      .. +++|++||+.+++.||...||||++|...+-.+...                                         
T Consensus       182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~-----------------------------------------  220 (291)
T KOG1679|consen  182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY-----------------------------------------  220 (291)
T ss_pred             HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH-----------------------------------------
Confidence            99 999999999999999999999999998764322111                                         


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                            .-|.+++++|.-+.|.++++.|..++.+.+.++-.++..|..-..+.+.   +.|.-|
T Consensus       221 ----------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLe  275 (291)
T KOG1679|consen  221 ----------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLE  275 (291)
T ss_pred             ----------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHH
Confidence                                  1233579999999999999999999999999999999999888888886   999999


Q ss_pred             hHhhhhcCCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~~  364 (378)
                      |+.+|. +| |+|.|+++
T Consensus       276 glaaf~-ek-r~p~y~G~  291 (291)
T KOG1679|consen  276 GLAAFK-EK-RKPEYKGE  291 (291)
T ss_pred             HHHHHH-hh-cCCCcCCC
Confidence            999999 88 89999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.1e-44  Score=379.49  Aligned_cols=286  Identities=18%  Similarity=0.227  Sum_probs=222.7

Q ss_pred             ceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        35 ~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      .+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~   85 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS   85 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence            467774 78999999999999999999999999999999999999999999999999999999998753211 1222334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |++
T Consensus        86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~  165 (715)
T PRK11730         86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE  165 (715)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence            4555667788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCH-HHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-SVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      |++||++++|+||+++||||+|||++++.+...++++.....+ ..       .... .+......  .+.+..+++.  
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~-------~~~~-~~~~~p~a--~~~~~~~~~~--  233 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDW-------KARR-QPKLEPLK--LSKIEAMMSF--  233 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcc-------cccc-Cccccccc--ccchhHHHHH--
Confidence            9999999999999999999999999887654444431111000 00       0000 00000000  0000000000  


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHH-HHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          272 VEEIIDSLESEASLINDPWCGST-LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~-a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                       ..+++. .++..++.|.++ .++++++.+...+++++++.|.+.+..++.   ++|++||+++
T Consensus       234 -----------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~egi~a  292 (715)
T PRK11730        234 -----------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARALVGI  292 (715)
T ss_pred             -----------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                             111111 245566777777 567899988888999999999999999997   9999999999


Q ss_pred             hhcCC
Q 017069          351 RMVDR  355 (378)
Q Consensus       351 fl~ek  355 (378)
                      |+ ++
T Consensus       293 F~-~~  296 (715)
T PRK11730        293 FL-ND  296 (715)
T ss_pred             HH-HH
Confidence            99 55

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-44  Score=344.56  Aligned_cols=217  Identities=20%  Similarity=0.236  Sum_probs=186.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC---C-
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K-  108 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~-  108 (378)
                      ++.|.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++.......   . 
T Consensus         9 ~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~   88 (302)
T PRK08272          9 LKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA   88 (302)
T ss_pred             CCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence            567899999999999999999999999999999999999999999999999999999999999999886432100   0 


Q ss_pred             ---------------hHH--HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccC
Q 017069          109 ---------------LEE--CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIG  171 (378)
Q Consensus       109 ---------------~~~--~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G  171 (378)
                                     ...  ...++..+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~g  168 (302)
T PRK08272         89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVW  168 (302)
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcc
Confidence                           000  012344566778889999999999999999999999999999999999999999999986


Q ss_pred             ccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccC
Q 017069          172 FHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY  250 (378)
Q Consensus       172 l~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  250 (378)
                      .+|+.   ..+++++|.. |++|++||++++|+||+++||||+++|++++++..                          
T Consensus       169 g~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a--------------------------  219 (302)
T PRK08272        169 GVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERT--------------------------  219 (302)
T ss_pred             cCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHH--------------------------
Confidence            66643   3578899999 99999999999999999999999999987764322                          


Q ss_pred             CCCchhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC
Q 017069          251 PDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ  319 (378)
Q Consensus       251 ~~~~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~  319 (378)
                                                               .+++++|++.||.+++.+|++++...+.
T Consensus       220 -----------------------------------------~~la~~ia~~~~~a~~~~K~~l~~~~~~  247 (302)
T PRK08272        220 -----------------------------------------ERLVERIAAVPVNQLAMVKLAVNSALLQ  247 (302)
T ss_pred             -----------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                                                     2368999999999999999999987653

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-44  Score=332.94  Aligned_cols=225  Identities=15%  Similarity=0.121  Sum_probs=197.8

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.+.++.+++|++|||||| +.|++|.+++.+|.++++.++  +++++|||+|.|++||+|+|++++...     ....
T Consensus         2 ~~~i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~   73 (229)
T PRK06213          2 SELVSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAA   73 (229)
T ss_pred             cceEEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhH
Confidence            45688999999999999998 479999999999999999988  457999999999999999999987531     2233


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+..++++++|.. +
T Consensus        74 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         74 IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            345566678888999999999999999999999999999999999999 99999999999998888888899999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++++++|++++|+||+++||||+|+|++++.+  .                                             
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------  186 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLA--R---------------------------------------------  186 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHH--H---------------------------------------------
Confidence            99999999999999999999999999877643  1                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  332 (378)
                                          +.++++++++.+|.+++.+|++++......+.++++.|.+.+
T Consensus       187 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        187 --------------------AQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             --------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence                                223688999999999999999999887777888888776643

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.8e-45  Score=319.58  Aligned_cols=264  Identities=21%  Similarity=0.303  Sum_probs=229.4

Q ss_pred             ccCCCceEEEe---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhh-c
Q 017069           30 DDLCNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM-N  105 (378)
Q Consensus        30 ~~~~~~v~~~~---~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~-~  105 (378)
                      .++++.+.+.+   +..|.++.||||.|.|+|+..|+.|+.++++.++.||++++|||+|+|++||+|+|+..+.... .
T Consensus        15 ~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~   94 (292)
T KOG1681|consen   15 DHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRIL   94 (292)
T ss_pred             ccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcc
Confidence            34566555553   4579999999999999999999999999999999999999999999999999999987765331 1


Q ss_pred             --c-----CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcch
Q 017069          106 --Q-----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA  178 (378)
Q Consensus       106 --~-----~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~  178 (378)
                        +     .......++...+++-+..|.+||||||++|||+|+|+|..|..+||+|+|+++|.|+.-|+.+|+..+.|.
T Consensus        95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT  174 (292)
T KOG1681|consen   95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT  174 (292)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence              1     112345667778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHH--HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchh
Q 017069          179 SFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV  256 (378)
Q Consensus       179 ~~~l~r~~g~~--a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (378)
                      ..+||..+|.+  ++++.+|++.|+|.||++.|||.+|+|+.+.. +..++                             
T Consensus       175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l-----------------------------  224 (292)
T KOG1681|consen  175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL-----------------------------  224 (292)
T ss_pred             HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH-----------------------------
Confidence            99999999964  99999999999999999999999999975532 22222                             


Q ss_pred             hhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcc
Q 017069          257 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGV  336 (378)
Q Consensus       257 ~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~  336 (378)
                                                          .+|..|+.++|.++..||+.++++.+.+.++.|.+-.-+....+
T Consensus       225 ------------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L  268 (292)
T KOG1681|consen  225 ------------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSML  268 (292)
T ss_pred             ------------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence                                                36899999999999999999999999999999999888887777


Q ss_pred             ccCCCCcHHhhHhhhhcCCCCCCCCCC
Q 017069          337 SRLISGDFYEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       337 ~~~~~~d~~egv~afl~ek~r~P~~~~  363 (378)
                      .   +.|+.+++.+-+ +|..++.|.+
T Consensus       269 ~---s~Dl~~av~a~m-~k~k~~tfsk  291 (292)
T KOG1681|consen  269 L---SDDLVKAVMAQM-EKLKTVTFSK  291 (292)
T ss_pred             H---HHHHHHHHHHHh-hcCCCCCccc
Confidence            6   999999999999 6634454753

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.1e-42  Score=366.54  Aligned_cols=281  Identities=18%  Similarity=0.212  Sum_probs=219.5

Q ss_pred             ceEEEe-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           35 QVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        35 ~v~~~~-~~~v~~Itln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      .+.++. +++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++...   .....
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~~~~   82 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KTAQE   82 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CCHHH
Confidence            466777 789999999999 589999999999999999999999999999999975 899999999987532   11222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccccCccCCcchHHHHhhcchHH
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~  162 (708)
T PRK11154         83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS  162 (708)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence            2334455667888999999999999999999999999999999999996  59999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |++|++||++++|+||+++||||+++|++++.+...++++........            .+    ...      ...+
T Consensus       163 ~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~------------~~----~~~------~~~~  220 (708)
T PRK11154        163 TALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRP------------LP----VRE------RLLE  220 (708)
T ss_pred             HHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCc------------CC----chh------hhcc
Confidence             999999999999999999999999999988765444443210000000            00    000      0000


Q ss_pred             CCCH--HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          269 LDTV--EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       269 ~~~~--~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                      .+..  ..+++            .+.+.+++-.+..-.|...+|++++.+...+++++++.|.+.+..++.   ++|+++
T Consensus       221 ~~p~~~~~~~~------------~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~  285 (708)
T PRK11154        221 GNPLGRALLFK------------QARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPESAA  285 (708)
T ss_pred             cCchhHHHHHH------------HHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHH
Confidence            0000  11111            111122222332346899999999999888999999999999999997   999999


Q ss_pred             hHhhhhcCC
Q 017069          347 GVRARMVDR  355 (378)
Q Consensus       347 gv~afl~ek  355 (378)
                      ++++|+.++
T Consensus       286 ~~~aF~~~~  294 (708)
T PRK11154        286 LRSIFFATT  294 (708)
T ss_pred             HHHHHHHHH
Confidence            999999664

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=2.8e-42  Score=329.26  Aligned_cols=285  Identities=17%  Similarity=0.269  Sum_probs=210.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  122 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  122 (378)
                      +++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ........+...++.+
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l  116 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM  116 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence            556999999999999999999999999999999999999999999 69999999998764321 1222334455556778


Q ss_pred             HHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCC
Q 017069          123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN  201 (378)
Q Consensus       123 ~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~  201 (378)
                      +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus       117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHH-HHHHHHHhccccCCCC---chhhhHHHHHHHhcCCCCHHHHHH
Q 017069          202 GAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSV-IEACLEKYSDLVYPDK---NSVIHRIDIVDKCFGLDTVEEIID  277 (378)
Q Consensus       202 a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~i~~  277 (378)
                      |+||+++|||++|+|+.+++.  +-.     .+|.. -..+++.|....+...   .........++++=  .....+  
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~--~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~l--  265 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDG--KFV-----ANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGT--IDLSLL--  265 (360)
T ss_pred             HHHHHHcCChheecCchhcCc--chh-----cCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhccc--chHhHH--
Confidence            999999999999999887731  000     01111 1122222222222111   11111112222110  111111  


Q ss_pred             HHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCC
Q 017069          278 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDR  355 (378)
Q Consensus       278 ~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek  355 (378)
                                ++-..+++.++....|..+.-+++-++.......+..-+.-+..+.--+    ..+..+|++||- ++
T Consensus       266 ----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~  328 (360)
T TIGR03200       266 ----------DEAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNM----MNEARTGFRAFN-EG  328 (360)
T ss_pred             ----------HHHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhc----ccccchhhHHHh-cc
Confidence                      1122235677888889999999999987776655555444444443333    578899999999 63

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=4e-42  Score=361.39  Aligned_cols=278  Identities=18%  Similarity=0.192  Sum_probs=217.0

Q ss_pred             EEeeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-ecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           38 VEGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        38 ~~~~~~v~~Itln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      .+.+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++||| +|.|++||+|+|++++...   ........+
T Consensus         5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~   81 (699)
T TIGR02440         5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKAL   81 (699)
T ss_pred             EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHH
Confidence            345789999999999 68999999999999999999999999999986 6788999999999987532   112233344


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      ....+.++..+.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|.. +++
T Consensus        82 ~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~  161 (699)
T TIGR02440        82 AQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD  161 (699)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHH
Confidence            555677888999999999999999999999999999999999986  79999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC--
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD--  270 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--  270 (378)
                      |+++|+.++|++|+++||||+++|++++.+....+++..                ..........      .+.-+.+  
T Consensus       162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~----------------~~~~~~~~~~------~~~~~~~~~  219 (699)
T TIGR02440       162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG----------------KPIRKPLSLQ------ERLLEGTPL  219 (699)
T ss_pred             HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC----------------CCCCCCccch------hhhcccCch
Confidence            999999999999999999999999988765444443210                0000000000      0000000  


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                      ....++            +++.+.+++-.+..-.|...+|++++.+...+++++++.|.+.+..++.   ++|.++++++
T Consensus       220 a~~~~~------------~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~~  284 (699)
T TIGR02440       220 GRALLF------------DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPESAALRSI  284 (699)
T ss_pred             hHHHHH------------HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            000010            1111222222333445788889999999999999999999999999997   9999999999


Q ss_pred             hhcCC
Q 017069          351 RMVDR  355 (378)
Q Consensus       351 fl~ek  355 (378)
                      |+.++
T Consensus       285 f~~~~  289 (699)
T TIGR02440       285 FFATT  289 (699)
T ss_pred             HHHHH
Confidence            99664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=4.8e-41  Score=353.33  Aligned_cols=287  Identities=16%  Similarity=0.213  Sum_probs=221.6

Q ss_pred             ceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        35 ~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      .+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~   85 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI   85 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence            567774 78999999999999999999999999999999999999999999999999999999998853211 1222333


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      .+....+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |.+
T Consensus        86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~  165 (714)
T TIGR02437        86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE  165 (714)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            4555667888999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhh-cCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      |++||++++|++|+++||||+++|++++.+...++... ......       ...... +......  .+.+..+|..  
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~-------~~~~~~-~~~~~~~--~~~~~~~~~~--  233 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD-------WKAKRQ-PKLEPLK--LSKIEAMMSF--  233 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc-------ccccCC-CCccccc--ccchHHHHHH--
Confidence            99999999999999999999999988876544444311 000000       000000 0000000  0001111111  


Q ss_pred             HHHHHHHHHhhccCCCcHHHHH-HHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          272 VEEIIDSLESEASLINDPWCGS-TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~-~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                       +++.+ ..++...+.|...+. .+++..+...+++++++.|.+.|.+++.   +++.++.++.
T Consensus       234 -----------------~~~~~~~~~~~~~~~pap~~~-~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~~~  292 (714)
T TIGR02437       234 -----------------TTAKGMVAQVAGPHYPAPMTA-VKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALIGL  292 (714)
T ss_pred             -----------------HHHHHHHHHhhcCCCCCHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                             11122 234445555544444 5688888888999999999999999998   9999999999


Q ss_pred             hhcCC
Q 017069          351 RMVDR  355 (378)
Q Consensus       351 fl~ek  355 (378)
                      |+.++
T Consensus       293 ff~~r  297 (714)
T TIGR02437       293 FLNDQ  297 (714)
T ss_pred             HhhhH
Confidence            99654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-41  Score=303.45  Aligned_cols=252  Identities=22%  Similarity=0.316  Sum_probs=226.5

Q ss_pred             CCceEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.+++++++.+|.+| ||++.|+++.+++.++..+|+.+..|+++..++++|.|++||+|.|+..+......+..+.
T Consensus         6 ~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~   85 (266)
T KOG0016|consen    6 YREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEE   85 (266)
T ss_pred             ccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccccc
Confidence            567889999999999999 9999999999999999999999999999999999999999999999998876543333322


Q ss_pred             H---HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          112 C---KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       112 ~---~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      .   ..+...+..+...+..+|||+||+|||+|+|.|..+...||+|+|+|+++|..|+..+|..|.+|+++.+|+++|.
T Consensus        86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~  165 (266)
T KOG0016|consen   86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGS  165 (266)
T ss_pred             chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhch
Confidence            2   2333444457888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . |.+|++.|++++|+||.+.|||+++++.+++.+  +.+                                        
T Consensus       166 ~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~--~v~----------------------------------------  203 (266)
T KOG0016|consen  166 ASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNE--EVL----------------------------------------  203 (266)
T ss_pred             hhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHH--HHH----------------------------------------
Confidence            9 999999999999999999999999999987753  221                                        


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                               +.++++++.+|.+++..|++++......+..+.+.|.+.....|.   ++|+.+.
T Consensus       204 -------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~---s~e~~~~  255 (266)
T KOG0016|consen  204 -------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWV---SAECLAR  255 (266)
T ss_pred             -------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcc---ChHHHHH
Confidence                                     236888999999999999999999888999999999999999998   9999999


Q ss_pred             HhhhhcCC
Q 017069          348 VRARMVDR  355 (378)
Q Consensus       348 v~afl~ek  355 (378)
                      +.+|+ .|
T Consensus       256 ~~~~~-~~  262 (266)
T KOG0016|consen  256 FKQYL-SK  262 (266)
T ss_pred             HHHHh-cc
Confidence            99999 54

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=5.3e-41  Score=310.75  Aligned_cols=183  Identities=16%  Similarity=0.158  Sum_probs=156.7

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      +.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++...  .........
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~   78 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL   78 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence            5678889999999999984 9999999999999999999998865 77889999999999999986421  112222233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEe-CceEEeccccccCccCCcchHHHHhhcchHH-H-H
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E  191 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a-~  191 (378)
                      +...+++++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.++++++|.. + +
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~  158 (239)
T PLN02267         79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR  158 (239)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence            44556778889999999999999999999999999999999998 5689999999999974444578899999988 7 6


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC-CChh
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVS-EKLP  221 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~  221 (378)
                      +++++|++++|+||+++||||+++|+ +++.
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~  189 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETV  189 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCCHHHHH
Confidence            89999999999999999999999985 4453

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2.2e-40  Score=349.09  Aligned_cols=294  Identities=18%  Similarity=0.216  Sum_probs=215.0

Q ss_pred             CceEEEeeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           34 NQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFV-SMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-vl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +.+.++.+++|++||||||+ +.|+||.+++.+|.++++.++.|+++++| |++|.|++||+|+|++++...   .....
T Consensus        13 ~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~~   89 (737)
T TIGR02441        13 THRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQE   89 (737)
T ss_pred             CeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChHH
Confidence            56888999999999999998 58999999999999999999999999965 679999999999999988531   12233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccccCccCCcchHHHHhhcchHH
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++|..
T Consensus        90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~  169 (737)
T TIGR02441        90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP  169 (737)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHH
Confidence            3455566778899999999999999999999999999999999999997  58999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCC--CCh---hH-HHHHHhhhcCCCHHHHHH---HHHHhccccCCCCchhhhH
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVS--EKL---PL-IEEELGKLVTDDPSVIEA---CLEKYSDLVYPDKNSVIHR  259 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~--~~l---~~-~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  259 (378)
                       |.+|+++|++++|+||+++||||+|+|+  +++   ++ ..+.+..........+..   ..+++..... .....   
T Consensus       170 ~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~-~~~~~---  245 (737)
T TIGR02441       170 AALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVH-KITQY---  245 (737)
T ss_pred             HHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccC-ccchh---
Confidence             9999999999999999999999999986  221   11 011111000000000000   0000000000 00000   


Q ss_pred             HHHHHHhcCC-CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcccc
Q 017069          260 IDIVDKCFGL-DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR  338 (378)
Q Consensus       260 ~~~~~~~f~~-~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~  338 (378)
                            ..+. .....+++..           ..++.++...+.|...+ +.+++..+...++++++..|.+.|.+++. 
T Consensus       246 ------~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~~Ap~~-~l~~v~~~~~~~~~~gl~~E~~~f~~l~~-  306 (737)
T TIGR02441       246 ------VMTNPFVRQQVYKTA-----------EDKVMKQTKGLYPAPLK-ILDVVRTGYDQGPDAGYEAESKAFGELSM-  306 (737)
T ss_pred             ------hcccchhHHHHHHHH-----------HHHHHHhccCCCccHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence                  0000 0011111111           11223333333554444 46788888888999999999999999998 


Q ss_pred             CCCCcHHhhHhhhhcCC
Q 017069          339 LISGDFYEGVRARMVDR  355 (378)
Q Consensus       339 ~~~~d~~egv~afl~ek  355 (378)
                        |++.+.-++.|+.++
T Consensus       307 --s~~a~al~~~f~~~~  321 (737)
T TIGR02441       307 --TFESKALIGLFHGQT  321 (737)
T ss_pred             --CHHHHHHHHHHHHHH
Confidence              999999999999764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.8e-41  Score=295.00  Aligned_cols=260  Identities=19%  Similarity=0.257  Sum_probs=211.2

Q ss_pred             CCCceEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--C-CCcccCCChhhHHHhhccC
Q 017069           32 LCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--G-RAFCAGGDIVSLYHFMNQG  107 (378)
Q Consensus        32 ~~~~v~~~~~-~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~--g-~~F~~G~Dl~~~~~~~~~~  107 (378)
                      .++.|.|++. ++|+.||||||+.+|+|.+.++.||.++|..+..|++|.+|||||.  | .+||+|+|-+-......-.
T Consensus        16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~   95 (282)
T COG0447          16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV   95 (282)
T ss_pred             CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence            5788999997 9999999999999999999999999999999999999999999985  5 7999999976543210000


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcch
Q 017069          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (378)
                      +.+....  -...++.+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|.+|
T Consensus        96 ~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447          96 DDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             CCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence            1111111  12335667789999999999999999999999999999999999999999999999987778888999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      .. |+++.+.++.++|+||+++|+||.|||.++|++  +.+                                       
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~--e~v---------------------------------------  212 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK--ETV---------------------------------------  212 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH--HHH---------------------------------------
Confidence            99 999999999999999999999999999988863  211                                       


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                                ++++.|..+||.|++..|..+|...+  -..+++ |+..-..++ .+.+++.+|
T Consensus       213 --------------------------~W~~E~l~kSP~AlR~LK~Afnad~D--GlaG~q-~~ag~at~L-~YmTdEa~E  262 (282)
T COG0447         213 --------------------------QWAREMLAKSPTALRMLKAAFNADCD--GLAGLQ-ELAGNATLL-YYMTDEAQE  262 (282)
T ss_pred             --------------------------HHHHHHHhcChHHHHHHHHHhcCCCc--hhhHHH-HhcccceEE-EEechhhhh
Confidence                                      25888999999999999998885432  222222 222222222 235999999


Q ss_pred             hHhhhhcCCCCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPFHLS  366 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~~~~  366 (378)
                      |-.||+ || |+|.|..-+.
T Consensus       263 Gr~AF~-eK-R~Pdf~~fp~  280 (282)
T COG0447         263 GRDAFL-EK-RKPDFSKFPR  280 (282)
T ss_pred             hHHHHh-hc-cCCChHhcCC
Confidence            999999 99 9999986543

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-39  Score=281.33  Aligned_cols=255  Identities=19%  Similarity=0.242  Sum_probs=224.3

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      ...+++.+++|..|+|++|+|.|.++.+|+.+|.+.|....++.++|+|||+..|+.||+|.||+++.+.   ...+...
T Consensus        32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e---~g~d~ha  108 (287)
T KOG1682|consen   32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNE---PGSDIHA  108 (287)
T ss_pred             cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcC---ccchHHH
Confidence            3456667799999999999999999999999999999999888999999999999999999999998753   3345556


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHH
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (378)
                      ..+....+++.-|+++|+||||-|||+|..+|+.|...||+++|+++++|..|...+|++...-+.. |.|.++.. +.+
T Consensus       109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkva~~  187 (287)
T KOG1682|consen  109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKVAAY  187 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhHHHH
Confidence            7788888999999999999999999999999999999999999999999999999999976655444 78888888 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCH
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  272 (378)
                      |++||.+++++||+..|||.+|||.++++...+                                               
T Consensus       188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~-----------------------------------------------  220 (287)
T KOG1682|consen  188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIE-----------------------------------------------  220 (287)
T ss_pred             HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999998863222                                               


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       273 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                          +++.+|...|...+.+.|+.+......+--+++..-.+....-+.   -.|.+|||.+|+
T Consensus       221 --------------------~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~q---l~d~kegiasf~  277 (287)
T KOG1682|consen  221 --------------------EITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQ---LGDTKEGIASFF  277 (287)
T ss_pred             --------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccchHHHHHHHh
Confidence                                246778888888888999988888777778888877777777776   899999999999


Q ss_pred             cCCCCCCCCCCC
Q 017069          353 VDRDIAPKVPFH  364 (378)
Q Consensus       353 ~ek~r~P~~~~~  364 (378)
                       +| |+|.|.|.
T Consensus       278 -~k-rp~~~~h~  287 (287)
T KOG1682|consen  278 -EK-RPPNWKHQ  287 (287)
T ss_pred             -cc-CCCCcCCC
Confidence             98 99999873

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.8e-38  Score=285.05  Aligned_cols=188  Identities=32%  Similarity=0.505  Sum_probs=172.2

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      +.++++++|++|+||+|++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|+|++++......  .+....+
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~   78 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF   78 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999998754211  1135667


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...++.++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|.. +.+++
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEE  225 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~  225 (378)
                      ++|+.++|+||+++|||+++++.+++.+...
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~  189 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAAL  189 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHH
Confidence            9999999999999999999999877754333

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5e-38  Score=318.52  Aligned_cols=196  Identities=14%  Similarity=0.163  Sum_probs=164.8

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGS-GRAFCAGGDI   97 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vvl~g~-g~~F~~G~Dl   97 (378)
                      ++.++.+.++.+++|++||||||+          +.|+||.+|+.+|.++|+.++ .|+++++|||||. |++||+|+|+
T Consensus         7 ~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL   86 (546)
T TIGR03222         7 PSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI   86 (546)
T ss_pred             CCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence            345778999999999999999975          899999999999999999999 7899999999997 5899999999


Q ss_pred             hhHHHhhccCChHHHHHHH-HHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccc-cCcc
Q 017069           98 VSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFH  173 (378)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~  173 (378)
                      +++...... .......+. .....+.+.+..+||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++
T Consensus        87 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~  165 (546)
T TIGR03222        87 FMLGLSTHA-WKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL  165 (546)
T ss_pred             HHHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence            987431100 011111111 11234556678899999999999999999999999999999986  799999997 9999


Q ss_pred             CCcchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 017069          174 PDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE  226 (378)
Q Consensus       174 p~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~  226 (378)
                      |++|+..++.  +++|.. |++|++||+.++|+||+++||||+|||++++++...+
T Consensus       166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~  221 (546)
T TIGR03222       166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAE  221 (546)
T ss_pred             CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHH
Confidence            9999999887  689998 9999999999999999999999999998887654433

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=8.4e-37  Score=310.57  Aligned_cols=193  Identities=15%  Similarity=0.172  Sum_probs=162.3

Q ss_pred             cCCCceEEEeeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecCC-CCcccCCChh
Q 017069           31 DLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSG-RAFCAGGDIV   98 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vvl~g~g-~~F~~G~Dl~   98 (378)
                      ..++.+.++.+++|++||||||       +   +.|+|+.+|+.+|.++++.++ .|+++++|||||.+ ++||+|+|++
T Consensus        12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~   91 (550)
T PRK08184         12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF   91 (550)
T ss_pred             CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence            3477899999999999999965       3   899999999999999999999 78999999999985 8999999999


Q ss_pred             hHHHhhccCChHHHHHHHH-HHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccc-cCccC
Q 017069           99 SLYHFMNQGKLEECKDFFR-TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFHP  174 (378)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~p  174 (378)
                      ++...... .......+.. ....+...+..+||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++|
T Consensus        92 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P  170 (550)
T PRK08184         92 MLGGSSHA-WKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLP  170 (550)
T ss_pred             hHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCC
Confidence            87432110 0011111111 1123455678899999999999999999999999999999987  899999997 99999


Q ss_pred             CcchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHH
Q 017069          175 DAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE  224 (378)
Q Consensus       175 ~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~  224 (378)
                      ++|++++++  +++|.. +.+|++||+.++|+||+++||||++||++++++..
T Consensus       171 ~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a  223 (550)
T PRK08184        171 GTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKV  223 (550)
T ss_pred             CcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHH
Confidence            999999998  779998 99999999999999999999999999988775433

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.79  E-value=3.3e-19  Score=157.89  Aligned_cols=140  Identities=16%  Similarity=0.110  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcce
Q 017069           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (378)
Q Consensus        61 ~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~  140 (378)
                      -.+.+|.++++.+.+|+++++|||++    +|.|+|+....                .+.+++..+..++|||||+|+|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~   81 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN   81 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence            35789999999999999999999997    68898876421                23345666778999999999999


Q ss_pred             eechhhcccccCCeEEEeCceEEeccccccCccCCcchHH--------HHhhcch--HH-HHHHHhcCCCCCHHHHHHcC
Q 017069          141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACG  209 (378)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~g--~~-a~~l~ltG~~~~a~eA~~~G  209 (378)
                      |.|+|+.|+++||++++++++.|+.+.+..+..+......        .+++..|  .. ..+++..|..++|++|++.|
T Consensus        82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G  161 (177)
T cd07014          82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG  161 (177)
T ss_pred             hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence            9999999999999999999999999987766433222222        3444445  55 78888999999999999999


Q ss_pred             ccceecCCCCh
Q 017069          210 LATHYSVSEKL  220 (378)
Q Consensus       210 lv~~vv~~~~l  220 (378)
                      |||++.+.+++
T Consensus       162 LVD~v~~~~e~  172 (177)
T cd07014         162 LVDSLGSFDDA  172 (177)
T ss_pred             CcccCCCHHHH
Confidence            99999987655

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.78  E-value=1.4e-18  Score=155.17  Aligned_cols=146  Identities=12%  Similarity=0.072  Sum_probs=115.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |++|.++.     .++..+...+.+.|+.+.+++ ++.|+|.=.    |-|+++..-                   ..++
T Consensus         1 ~~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~   51 (187)
T cd07020           1 VYVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIV   51 (187)
T ss_pred             CEEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHH
Confidence            35667753     366777888999999998665 777777632    555555431                   1234


Q ss_pred             HHHhcCCCcEEEEEc---ceeechhhcccccCCeEEEeCceEEeccccccCccCCc--------------chHHHHhhcc
Q 017069          124 YLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLP  186 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~~  186 (378)
                      ..+..+||||||+|+   |+|.|||+.++++||+++++++++|+.+++..|..+..              +....+++..
T Consensus        52 ~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (187)
T cd07020          52 QAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELR  131 (187)
T ss_pred             HHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence            456679999999999   99999999999999999999999999999985554432              2455688888


Q ss_pred             hH--H-HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 017069          187 GH--L-GEFLALTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       187 g~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      |.  . +.+++++|+.|+|+||+++||||+++++.
T Consensus       132 G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         132 GRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL  166 (187)
T ss_pred             CCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence            86  5 88999999999999999999999999885

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.73  E-value=1.4e-17  Score=137.04  Aligned_cols=105  Identities=41%  Similarity=0.723  Sum_probs=87.5

Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccc
Q 017069          258 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  337 (378)
Q Consensus       258 ~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  337 (378)
                      .+...|++||+.+++++|+++|+.    ...+|+.+.++.|.++||.|+++|.++++++...++.++++.|+++..+++.
T Consensus         4 ~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~   79 (118)
T PF13766_consen    4 EHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR   79 (118)
T ss_dssp             HCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence            457789999999999999999998    3789999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCcHHhhHhhhhcCCCCCCCCCCC--CCCCC
Q 017069          338 RLISGDFYEGVRARMVDRDIAPKVPFH--LSLPK  369 (378)
Q Consensus       338 ~~~~~d~~egv~afl~ek~r~P~~~~~--~~~~~  369 (378)
                         .+||.|||+|.||+|+++|+|++.  .+|+.
T Consensus        80 ---~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~  110 (118)
T PF13766_consen   80 ---HPDFAEGVRALLIDKDKNPKWSPASLEDVSD  110 (118)
T ss_dssp             ---CSCHHHHHHHHTTS-------SSSSCCCS-H
T ss_pred             ---cchHHHHHHHHHhcCCCCCCCCCCChHHCCH
Confidence               899999999999999999999997  45543

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.60  E-value=2.8e-15  Score=136.33  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=108.6

Q ss_pred             CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 017069           43 NSRMAILNRP--SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (378)
Q Consensus        43 ~v~~Itln~p--~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (378)
                      +|++|.++.|  ...+.-+...+.+|.++|+.+..|+++++|||+    .||.|+|+..+..                +.
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~   60 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR   60 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence            3556666543  122333455689999999999999999999998    6899999876431                22


Q ss_pred             HHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccc------------cccCccCC---c-c-------
Q 017069          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE------------TLIGFHPD---A-G-------  177 (378)
Q Consensus       121 ~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---~-g-------  177 (378)
                      +.+..+..++||+||+++|.|.|+|+.|+++||++++++.+.|+.--            -++|+-+.   . |       
T Consensus        61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~  140 (211)
T cd07019          61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  140 (211)
T ss_pred             HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCC
Confidence            34556778899999999999999999999999999999998876322            12232111   1 1       


Q ss_pred             ------hHHHHhhc-----------------chHHHHHHHhcCCCCCHHHHHHcCccceecCCCC
Q 017069          178 ------ASFYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       178 ------~~~~l~r~-----------------~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                            .-..+.+.                 +.....+-+..|..+++++|++.||||++..-++
T Consensus       141 ~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~  205 (211)
T cd07019         141 RALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD  205 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHH
Confidence                  00111111                 1112222356788999999999999999876443

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.51  E-value=8.7e-14  Score=121.14  Aligned_cols=134  Identities=14%  Similarity=0.146  Sum_probs=103.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..++.+|.+.|+.++.|+.+++|+|..    .|.|+|+...                   ..+...+..++||||+.+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~   64 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV   64 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence            56688999999999999999999999987    4777776432                   223445667789999999


Q ss_pred             cceeechhhcccccCCeEEEeCceEEeccccccCccCCcchH------HH----Hhhc---------chHH-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FY----LSHL---------PGHL-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~----l~r~---------~g~~-a~~l~ltG  197 (378)
                      +|.|.++|+.|+++||.|++.+++.|++..+..+.....+-.      ..    ..+.         .... ..+++..|
T Consensus        65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~  144 (161)
T cd00394          65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD  144 (161)
T ss_pred             CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence            999999999999999999999999999988876554322000      01    1111         1223 45677789


Q ss_pred             CCCCHHHHHHcCcccee
Q 017069          198 AKLNGAEMMACGLATHY  214 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~v  214 (378)
                      ..++|+||+++||||++
T Consensus       145 ~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         145 LVLTAQEALEYGLVDAL  161 (161)
T ss_pred             cEEcHHHHHHcCCcCcC
Confidence            99999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.49  E-value=3.1e-13  Score=123.22  Aligned_cols=95  Identities=19%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcC
Q 017069           51 RPSALNA-LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH  129 (378)
Q Consensus        51 ~p~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  129 (378)
                      ++...|+ ++..++.+|.++|+.++.|+++++|||+.    +|.|+++....                .+...+..+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~----------------~l~~~l~~~~~-   72 (214)
T cd07022          14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF----------------ELADAIRAARA-   72 (214)
T ss_pred             CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH----------------HHHHHHHHHhc-
Confidence            4444454 45789999999999999999999999986    46676654321                12222333334 


Q ss_pred             CCcEEEEEcceeechhhcccccCCeEEEeCceEEecc
Q 017069          130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP  166 (378)
Q Consensus       130 ~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p  166 (378)
                      +|||||+++|.|.|+|+.++++||++++++.+.|+..
T Consensus        73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            6999999999999999999999999999999987654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.45  E-value=6e-13  Score=120.86  Aligned_cols=153  Identities=18%  Similarity=0.139  Sum_probs=107.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |++|.++.+=...  ...++.+|.++|+.+..|+++++|+|++    +|.|+|+....                .+.+.+
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i   59 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI   59 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence            5677776542101  3689999999999999999999999998    48898876421                123345


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccc------------ccCccCCcc--------------
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAG--------------  177 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g--------------  177 (378)
                      ..+..++|||||+++|.|.|+|+.++++||++++++.+.|+..-+            ++|+-+..-              
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~  139 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP  139 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence            567778999999999999999999999999999999988754222            133322110              


Q ss_pred             ----hHHHHhhcch-----------------HHHHHHHhcCCCCCHHHHHHcCccceecCCC
Q 017069          178 ----ASFYLSHLPG-----------------HLGEFLALTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       178 ----~~~~l~r~~g-----------------~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                          ....+..++.                 .....-++.|..+++++|++.||||++...+
T Consensus       140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~  201 (208)
T cd07023         140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLD  201 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHH
Confidence                0111111111                 1112235688899999999999999997643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.43  E-value=4.5e-13  Score=116.58  Aligned_cols=128  Identities=15%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcce
Q 017069           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (378)
Q Consensus        61 ~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~  140 (378)
                      .+...+.+.|+.+..+..+ .+.|.+.|      +++..                   ...+...+..+++|||+.++|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspG------G~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~   68 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPG------GDVFA-------------------GLAIYNALKRHKGKVTVKIDGL   68 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCC------CCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence            5677888888888876433 34445444      33321                   1235556777899999999999


Q ss_pred             eechhhcccccCCeEEEeCceEEeccccccCccCCcc---------------hHHHHhhcch--HH-HHHHHhcCCCCCH
Q 017069          141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG---------------ASFYLSHLPG--HL-GEFLALTGAKLNG  202 (378)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g---------------~~~~l~r~~g--~~-a~~l~ltG~~~~a  202 (378)
                      |.|+|+.++++||+|+++++++|+++....|..+...               ....+.+..|  .. ...++..+..++|
T Consensus        69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a  148 (160)
T cd07016          69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA  148 (160)
T ss_pred             HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence            9999999999999999999999999877766544332               1233666777  45 6777777778999


Q ss_pred             HHHHHcCcccee
Q 017069          203 AEMMACGLATHY  214 (378)
Q Consensus       203 ~eA~~~Glv~~v  214 (378)
                      +||+++||||+|
T Consensus       149 ~eA~~~GliD~v  160 (160)
T cd07016         149 QEAVELGFADEI  160 (160)
T ss_pred             HHHHHcCCCCcC
Confidence            999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.37  E-value=2.6e-12  Score=133.09  Aligned_cols=157  Identities=17%  Similarity=0.212  Sum_probs=114.4

Q ss_pred             eeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHH
Q 017069           40 GKANSRMAILNRPS--ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  117 (378)
Q Consensus        40 ~~~~v~~Itln~p~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~  117 (378)
                      .+++|++|+++.+-  ..+..+....+.+.+.|+.+..|++|++|||+-.    |.|++....                .
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e  365 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E  365 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence            46789999999753  1333333345678889999999999999999975    334433210                1


Q ss_pred             HHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEE------eccc------cccCccCCcchHHHHhh-
Q 017069          118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH-  184 (378)
Q Consensus       118 ~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r-  184 (378)
                      .+.+.+..+...+||||+.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.|....+..+.. 
T Consensus       366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~  445 (584)
T TIGR00705       366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV  445 (584)
T ss_pred             HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence            1122333455678999999999999999999999999999998876      5553      57888877655443332 


Q ss_pred             ---------------------------------cchHHHHHHHhcCCCCCHHHHHHcCccceecC
Q 017069          185 ---------------------------------LPGHLGEFLALTGAKLNGAEMMACGLATHYSV  216 (378)
Q Consensus       185 ---------------------------------~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~  216 (378)
                                                       -+...+.+.+.+|+.++++||+++||||++..
T Consensus       446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~  510 (584)
T TIGR00705       446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG  510 (584)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence                                             22222566788999999999999999999953

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.35  E-value=9e-12  Score=113.03  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |++|+++.+=     + ....+|.++|+.+..|+++++|||++.    |.|+++...                   ..+.
T Consensus         2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~   52 (207)
T TIGR00706         2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY   52 (207)
T ss_pred             EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence            6677776542     1 345788999999999999999999985    778776532                   2233


Q ss_pred             HHHhcCC--CcEEEEEcceeechhhcccccCCeEEEeCceEEeccccc------------cCccCC------------c-
Q 017069          124 YLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD------------A-  176 (378)
Q Consensus       124 ~~i~~~~--kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~------------~-  176 (378)
                      ..|..++  ||+||.++|.|.|+|+.|+++||.+++++++.|+..-+.            +|+-+.            . 
T Consensus        53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~  132 (207)
T TIGR00706        53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT  132 (207)
T ss_pred             HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence            3444555  999999999999999999999999999999877653322            233210            0 


Q ss_pred             -c----hHHHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          177 -G----ASFYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       177 -g----~~~~l~-----------------r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                       .    .-..+.                 |-+.....+=++.|+.+++++|++.||||++...+++
T Consensus       133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~  198 (207)
T TIGR00706       133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA  198 (207)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence             0    001111                 1222221223478999999999999999999875554

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.24  E-value=6.3e-11  Score=104.66  Aligned_cols=141  Identities=16%  Similarity=0.234  Sum_probs=101.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.+|.++.     .+++.+...+.+.|+.+.+++ ++.|+|.=.    |.|+++..                   ...+.
T Consensus         1 v~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~   51 (178)
T cd07021           1 VYVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIV   51 (178)
T ss_pred             CEEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHH
Confidence            35666654     366788888999999998886 667766554    45555432                   23355


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcch--------HHH------HhhcchH-
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGH-  188 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~r~~g~-  188 (378)
                      ..|..+++|||+.|+|.|.++|+.++++||++++++++.|+.+++-    +..|.        ...      +...-|. 
T Consensus        52 ~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~  127 (178)
T cd07021          52 DLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRD  127 (178)
T ss_pred             HHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            6677899999999999999999999999999999999999988543    32222        111      1222232 


Q ss_pred             -H-HHHHHhcC-------------CCCCHHHHHHcCccceecCC
Q 017069          189 -L-GEFLALTG-------------AKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       189 -~-a~~l~ltG-------------~~~~a~eA~~~Glv~~vv~~  217 (378)
                       . +..|+-..             -.++++||++.|++|.+.++
T Consensus       128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence             2 44554443             27999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.19  E-value=7.2e-11  Score=108.26  Aligned_cols=142  Identities=12%  Similarity=-0.001  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      -+...+.+|.+.|+++..|++|++|||+..+..| ++.++.++                   .+.+..+...+|||||.+
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~   85 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA   85 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence            4567789999999999999999999999988766 55555443                   223334455799999999


Q ss_pred             cceeechhhcccccCCeEEEeCceEEeccccc------------cCccCC---------cchHHH-----------Hh--
Q 017069          138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AGASFY-----------LS--  183 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~~~-----------l~--  183 (378)
                      +| |.+||+.++++||.+++.+.+.|+..-+.            +|+-+.         .+..+.           +.  
T Consensus        86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~  164 (222)
T cd07018          86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL  164 (222)
T ss_pred             CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence            98 88999999999999999999998875332            222111         111110           11  


Q ss_pred             ---------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          184 ---------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       184 ---------------r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                                     |.+.....+-+..|..+++++|++.||||++...+++
T Consensus       165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~  216 (222)
T cd07018         165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL  216 (222)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence                           1111221223456999999999999999999865544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.78  E-value=8.1e-08  Score=84.17  Aligned_cols=144  Identities=10%  Similarity=0.194  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 017069           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (378)
Q Consensus        45 ~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (378)
                      .+|.++.     .+++.+...|.+.++.++++ .++.|+|.=.    |-|+.+...                   ..++.
T Consensus         2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~   52 (172)
T cd07015           2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQ   52 (172)
T ss_pred             EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence            4566653     36777888889999998865 4677777654    556655432                   22344


Q ss_pred             HHhcCCCcEEEEEc---ceeechhhcccccCCeEEEeCceEEeccccccCccCC----c-c---hHHHHh------hcch
Q 017069          125 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----A-G---ASFYLS------HLPG  187 (378)
Q Consensus       125 ~i~~~~kP~Iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~----~-g---~~~~l~------r~~g  187 (378)
                      .|...++||++.|.   |.|..+|.-++++||.+++.+++.++...+..|..+.    . .   .+..+.      +.-|
T Consensus        53 ~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~G  132 (172)
T cd07015          53 RIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESG  132 (172)
T ss_pred             HHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHC
Confidence            55678999999999   9999999999999999999999999988775443220    0 0   011111      2223


Q ss_pred             H--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 017069          188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       188 ~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      .  . +..++-....++|+||+++|++|.++.+
T Consensus       133 r~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         133 RNATIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             cCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence            2  3 5677778889999999999999999986

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.64  E-value=3.3e-07  Score=79.88  Aligned_cols=134  Identities=13%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+..++...|..++.++..+.|+|.=.    |.|+++..                   ...++..+..+++|+++.+
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~   65 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII   65 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence            567888999999999998877776666544    55555432                   1234455666889999999


Q ss_pred             cceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchHH---------------HHhhcch--HH-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPG--HL-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g--~~-a~~l~ltG  197 (378)
                      .|.|.++|.-++++||  .|++.+++.|.+....-|......-..               .+.+.-|  .. ...++-.+
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  145 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD  145 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence            9999999999999999  688888888886543322211100000               0111112  12 34455566


Q ss_pred             CCCCHHHHHHcCcccee
Q 017069          198 AKLNGAEMMACGLATHY  214 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~v  214 (378)
                      .-++|+||+++||||++
T Consensus       146 ~~~sa~eA~~~GliD~i  162 (162)
T cd07013         146 TWLSAREAVEYGFADTI  162 (162)
T ss_pred             ccccHHHHHHcCCCCcC
Confidence            66799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.59  E-value=4.4e-07  Score=81.83  Aligned_cols=139  Identities=15%  Similarity=0.066  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .++..+...+...|..++.++..+-|.|.=.    |.|+|+..                   ...++..|...+.|+++.
T Consensus        39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~   95 (200)
T PRK00277         39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVSTI   95 (200)
T ss_pred             EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence            3788899999999988886543333333222    44445432                   122334456678899999


Q ss_pred             EcceeechhhcccccC--CeEEEeCceEEeccccccCccCCcch----H-----------HHHhhcchH--H-HHHHHhc
Q 017069          137 LNGVTMGGGAGVSIPG--TFRVACGKTVFATPETLIGFHPDAGA----S-----------FYLSHLPGH--L-GEFLALT  196 (378)
Q Consensus       137 v~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~Gl~p~~g~----~-----------~~l~r~~g~--~-a~~l~lt  196 (378)
                      +.|.|.+.|..|++++  +.|++.+++.|.+....-|......-    +           ..+....|.  . ...++-.
T Consensus        96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~  175 (200)
T PRK00277         96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDR  175 (200)
T ss_pred             EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            9999999999998875  36788777777765543222110000    0           112222232  2 4455667


Q ss_pred             CCCCCHHHHHHcCccceecCCC
Q 017069          197 GAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       197 G~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      +.-++|+||+++||||+|+.+.
T Consensus       176 ~~~lsa~EA~e~GliD~Ii~~~  197 (200)
T PRK00277        176 DNFMSAEEAKEYGLIDEVLTKR  197 (200)
T ss_pred             CccccHHHHHHcCCccEEeecC
Confidence            8889999999999999999753

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.53  E-value=3.6e-08  Score=94.05  Aligned_cols=169  Identities=19%  Similarity=0.043  Sum_probs=139.6

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHHHH
Q 017069           43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS  121 (378)
Q Consensus        43 ~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~  121 (378)
                      ++..+.|+ |+ .|..|.++..+|..-++.++.+..+++.++|+.. +.|++|.|..+....    .......++..+.+
T Consensus        66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fspa~~m~LlE  139 (380)
T KOG1683|consen   66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSPAHWMQLLE  139 (380)
T ss_pred             ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCHHHHHHHHH
Confidence            67788888 55 6999999999999999999999988999999988 899999999988743    34445667778899


Q ss_pred             HHHHHhcCCCcEEEEEcceeechh--hcccccCCeEEEeC--ceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhc
Q 017069          122 FIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVACG--KTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT  196 (378)
Q Consensus       122 l~~~i~~~~kP~Iaav~G~a~GgG--~~lal~~D~~ia~~--~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~lt  196 (378)
                      ++....+++.|+.+++||++-.||  +-++-+|+|++...  .-..+..+...++..+..-.-.+...+|.. +-.-+--
T Consensus       140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d  219 (380)
T KOG1683|consen  140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD  219 (380)
T ss_pred             HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence            999999999999999999998888  88889999999984  444578888888543333344455566666 5556677


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 017069          197 GAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       197 G~~~~a~eA~~~Glv~~vv~~  217 (378)
                      |.-++..||++.|+++++.+.
T Consensus       220 ~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  220 GVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             ccCccHHHHHhhccchhccch
Confidence            899999999999999999986

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.44  E-value=1.4e-06  Score=78.91  Aligned_cols=137  Identities=14%  Similarity=0.047  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .++..+..++...|..++..+..+.|.|.=.    |.|+++..-                   ..++..|..++.|+++.
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~   99 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV   99 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence            3788999999999999987553344433332    445554321                   22445566678899999


Q ss_pred             EcceeechhhcccccCC--eEEEeCceEEecccccc-CccCCcchH------------------HHHhhcchH--H-HHH
Q 017069          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGAS------------------FYLSHLPGH--L-GEF  192 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~r~~g~--~-a~~  192 (378)
                      +.|.|.+.|.-|+++||  .|++.+++.|.+..... |.  ..|-.                  ..+...-|.  . ...
T Consensus       100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~  177 (207)
T PRK12553        100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK  177 (207)
T ss_pred             EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999  59999999999877653 21  12211                  112222232  2 455


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCC
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      ++-.+.-++|+||+++||||+|+++.
T Consensus       178 ~~~~~~~lta~EA~e~GliD~I~~~~  203 (207)
T PRK12553        178 DTDRDKWLTAEEAKDYGLVDQIITSY  203 (207)
T ss_pred             HHhcCccccHHHHHHcCCccEEcCch
Confidence            66678999999999999999999753

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.41  E-value=1.7e-06  Score=76.14  Aligned_cols=134  Identities=16%  Similarity=0.087  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++.....++...|..+..++..+.|+|.=.    |.|+|+..-                   ..++..+...+.|+++.+
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~   74 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC   74 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence            577888999999999988765555554433    445554321                   123334556789999999


Q ss_pred             cceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchH---------------HHHhhcchH--H-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~--~-a~~l~ltG  197 (378)
                      .|.|.++|.-+++++|  .|++.+++.|.+.+...+..-...-.               ..+....|.  . ...++-.+
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~  154 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD  154 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence            9999999999999999  79999999999888765543221000               001111121  2 34555678


Q ss_pred             CCCCHHHHHHcCcccee
Q 017069          198 AKLNGAEMMACGLATHY  214 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~v  214 (378)
                      .-++|+||+++||||+|
T Consensus       155 ~~lta~EA~e~GiiD~V  171 (171)
T cd07017         155 RYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             ccccHHHHHHcCCCccC
Confidence            88999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK10949 protease 4; Provisional

Probab=98.40  E-value=3.7e-06  Score=87.70  Aligned_cols=157  Identities=16%  Similarity=0.186  Sum_probs=100.7

Q ss_pred             eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           41 KANSRMAILNRP-----SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        41 ~~~v~~Itln~p-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      .+.|++|+++..     ...+.++.   +.+.+.|+++..|++||+|||+-.    |.|+....                
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a----------------  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA----------------  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH----------------
Confidence            467888888742     12233444   467788999999999999999986    44443321                


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccc------------ccCccCCcch-----
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGA-----  178 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~-----  178 (378)
                      .+.+.+.+..+....||||+.+.|.|.-||+-++.+||.++|.+.+..+---+            ++|+-+..-.     
T Consensus       382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~  461 (618)
T PRK10949        382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA  461 (618)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence            11122233334557899999999999999999999999999998654333111            2343221100     


Q ss_pred             ------------HHHHh-----------------hcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          179 ------------SFYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       179 ------------~~~l~-----------------r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                                  -..+.                 |.+.....+-+..|+.+++++|++.||||++-.-++.
T Consensus       462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~a  532 (618)
T PRK10949        462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDA  532 (618)
T ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHH
Confidence                        01111                 1112221223568999999999999999998764443

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.37  E-value=1.1e-05  Score=75.10  Aligned_cols=139  Identities=17%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-+++++-.....+.++.+++. .+-+|-|.-.++++. |.+..             .......+.+.+..+....+|+|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I  140 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII  140 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence            4567888899998888888765 355665544433332 33211             01123445566677788999999


Q ss_pred             EEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 017069          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~  213 (378)
                      +.|-|.|.|||......||++++.+++.++.      +.|.+++...+...--.. +.+.+    .+++.++.+.|+||+
T Consensus       141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~  210 (256)
T PRK12319        141 AIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK  210 (256)
T ss_pred             EEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence            9999999988887778999999999987763      233343333333221112 33333    779999999999999


Q ss_pred             ecCCC
Q 017069          214 YSVSE  218 (378)
Q Consensus       214 vv~~~  218 (378)
                      |+++.
T Consensus       211 ii~e~  215 (256)
T PRK12319        211 VIPEH  215 (256)
T ss_pred             ecCCC
Confidence            99854

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.32  E-value=2.6e-06  Score=75.61  Aligned_cols=141  Identities=18%  Similarity=0.199  Sum_probs=92.2

Q ss_pred             EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHH
Q 017069           47 AILNRPSALNALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (378)
Q Consensus        47 Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (378)
                      |.|+.|     ++.++...+...|..++.++..+  .|.|.      |.|+|+..                   ...++.
T Consensus        19 i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-------------------g~~i~~   68 (182)
T PF00574_consen   19 IFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-------------------GLAIYD   68 (182)
T ss_dssp             EEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-------------------HHHHHH
T ss_pred             EEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-------------------HHHHHH
Confidence            445544     68899999998887774332222  23334      45555543                   223455


Q ss_pred             HHhcCCCcEEEEEcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHHH----H-----------hhcch
Q 017069          125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY----L-----------SHLPG  187 (378)
Q Consensus       125 ~i~~~~kP~Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~----l-----------~r~~g  187 (378)
                      .|..++.|+++.+.|.|.+.|.-++++||.  |++.+++.|.+.+...+......-...    +           ....|
T Consensus        69 ~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg  148 (182)
T PF00574_consen   69 AIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTG  148 (182)
T ss_dssp             HHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            577789999999999999999999999999  899999999998886655331111100    1           01111


Q ss_pred             --HH-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 017069          188 --HL-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       188 --~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                        .. ...++-...-++|+||+++||||+|+.+
T Consensus       149 ~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  149 LSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             S-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             CcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence              12 2444445566899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.31  E-value=2.4e-05  Score=74.69  Aligned_cols=139  Identities=13%  Similarity=0.065  Sum_probs=93.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-.++++-.....+.++.++.. .+-+|-|--.+++++ |.+-.+             ......+.+....+....+|+|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I  196 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII  196 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence            4568899999999999888765 355555544333333 322111             1123345556666788999999


Q ss_pred             EEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 017069          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~  213 (378)
                      ++|-|.|.|||.-....||++++.+++.|+.      +.|.++++.++...--.. |.+    .-.++|+++++.|+||+
T Consensus       197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~~~a~~aA~----~~~ita~dL~~~giiD~  266 (322)
T CHL00198        197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDSKKSLDAAE----ALKITSEDLKVLGIIDE  266 (322)
T ss_pred             EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcchhhHHHHHH----HcCCCHHHHHhCCCCeE
Confidence            9999999888865555699999999998763      234454444443322222 333    45899999999999999


Q ss_pred             ecCCC
Q 017069          214 YSVSE  218 (378)
Q Consensus       214 vv~~~  218 (378)
                      |+|..
T Consensus       267 ii~Ep  271 (322)
T CHL00198        267 IIPEP  271 (322)
T ss_pred             eccCC
Confidence            99853

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.29  E-value=6.6e-06  Score=73.92  Aligned_cols=137  Identities=14%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+...+...|..++..+..+.|+|.=.    |.|+++..-                   ..++..|...+.||++.+
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v   88 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG   88 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence            677888899998888776333333333322    445554321                   234455667889999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHH----H-----------HhhcchH--H-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF----Y-----------LSHLPGH--L-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~----~-----------l~r~~g~--~-a~~l~ltG  197 (378)
                      .|.|.+.|.-|+++||-  |++.++++|.+-...-|+.....-..    .           +...-|.  . ...++-..
T Consensus        89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d  168 (197)
T PRK14512         89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD  168 (197)
T ss_pred             EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence            99999999999999985  99999999876655433211111000    0           1111222  1 34445556


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 017069          198 AKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~~  217 (378)
                      ..++|+||+++||||+|+++
T Consensus       169 ~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        169 FWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             cccCHHHHHHcCCccEeecC
Confidence            78999999999999999976

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.24  E-value=1.6e-05  Score=71.59  Aligned_cols=138  Identities=13%  Similarity=0.064  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .+|.++..++...|-.++.++..+-+.|.=.    |.|+|+..                   ...++..+...+.||...
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv   94 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTI   94 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence            3899999999999999875443343333222    44444332                   123455567788999999


Q ss_pred             EcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchHH-----------------HHhhcchH--H-HHHHH
Q 017069          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF-----------------YLSHLPGH--L-GEFLA  194 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~~g~--~-a~~l~  194 (378)
                      +.|.|.+.|.-|++++|  .|++.++++|.+.....|..-+- +.-                 .+...-|.  . ..+++
T Consensus        95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~  173 (200)
T CHL00028         95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM  173 (200)
T ss_pred             EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            99999999999999998  69999999999887765522111 111                 11111121  1 34555


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      -...-++|+||+++||||+|+.+.
T Consensus       174 ~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        174 ERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             hcCccCCHHHHHHcCCCcEEeecC
Confidence            666779999999999999999764

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.24  E-value=4.7e-05  Score=72.67  Aligned_cols=139  Identities=12%  Similarity=0.069  Sum_probs=91.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-+++++-.....+.++.++.- .+-+|-|.-.+++++ |.+..+             ......+.+.+..+....+|+|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I  193 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI  193 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence            3568888999999888888764 355665544433332 322211             1223445566677788999999


Q ss_pred             EEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 017069          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~  213 (378)
                      +.|-|.|.|||.-....||++++.+++.++.      +.|.++++..+...--.. +.+.    ..++|.++++.|+||.
T Consensus       194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae~----~~~ta~~l~~~G~iD~  263 (316)
T TIGR00513       194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAEA----MKITAPDLKELGLIDS  263 (316)
T ss_pred             EEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence            9999999777775555699999999987763      234444444333321112 3332    5678999999999999


Q ss_pred             ecCCC
Q 017069          214 YSVSE  218 (378)
Q Consensus       214 vv~~~  218 (378)
                      |+|..
T Consensus       264 II~ep  268 (316)
T TIGR00513       264 IIPEP  268 (316)
T ss_pred             eccCC
Confidence            99853

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.23  E-value=4.4e-05  Score=74.78  Aligned_cols=138  Identities=14%  Similarity=0.074  Sum_probs=92.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      .+++++-.....+.++.++.. .+-+|-|.-.++++ .|.+..+             ......+.+....+....+|+|+
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS  264 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA  264 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence            468899999999998888765 35555554433333 3322211             12234455667778899999999


Q ss_pred             EEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 017069          136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY  214 (378)
Q Consensus       136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~v  214 (378)
                      .|-|.+.+||.-...+||+++|.+++.++.      +.|.++++.++....-.. +.+    .-.++|+++++.|+||+|
T Consensus       265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I  334 (431)
T PLN03230        265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI  334 (431)
T ss_pred             EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence            999999666655455789999999987653      234455555444332222 333    338999999999999999


Q ss_pred             cCCC
Q 017069          215 SVSE  218 (378)
Q Consensus       215 v~~~  218 (378)
                      ++..
T Consensus       335 I~Ep  338 (431)
T PLN03230        335 VPEP  338 (431)
T ss_pred             ccCC
Confidence            9853

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.22  E-value=2.3e-05  Score=70.11  Aligned_cols=136  Identities=15%  Similarity=0.041  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+..++...|..++.++..+-|+|.=.    |.|+|+..-                   ..++..+..++.|+...+
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~~   91 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTIC   91 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence            677888888888888886554444443332    445554321                   123344556667787778


Q ss_pred             cceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchH---------------HHHhhcchH--H-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~--~-a~~l~ltG  197 (378)
                      .|.|.+.|.-+++++|  .|++.++++|.+.+..-|......-.               ..+.+.-|.  . ...++-.+
T Consensus        92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~  171 (191)
T TIGR00493        92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD  171 (191)
T ss_pred             EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence            8999999988888665  69999999999877654432111111               012222232  2 45566678


Q ss_pred             CCCCHHHHHHcCccceecC
Q 017069          198 AKLNGAEMMACGLATHYSV  216 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~  216 (378)
                      ..++|+||+++||||+|+.
T Consensus       172 ~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       172 FFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             ccCcHHHHHHcCCccEEec
Confidence            8899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.21  E-value=3.7e-05  Score=79.83  Aligned_cols=138  Identities=12%  Similarity=0.033  Sum_probs=93.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-++++.-+....+.++.++.. .+-+|-|--.++++. |.+...             ......+.+.+..+....+|+|
T Consensus       220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I  284 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV  284 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence            4467788888888888888765 355554444333332 322221             1223445566777889999999


Q ss_pred             EEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccce
Q 017069          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~  213 (378)
                      ++|-|.|.|||.-....||+++|.+++.++.      +.|.++++..+...--.. |.    ..-.++|++.+++|+||.
T Consensus       285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAA----e~lkiTa~dL~~lGiiD~  354 (762)
T PLN03229        285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAA----EKLRITAQELCRLQIADG  354 (762)
T ss_pred             EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHH----HHcCCCHHHHHhCCCCee
Confidence            9999999888877777799999999887553      234444444333322222 33    345899999999999999


Q ss_pred             ecCC
Q 017069          214 YSVS  217 (378)
Q Consensus       214 vv~~  217 (378)
                      |+|.
T Consensus       355 IIpE  358 (762)
T PLN03229        355 IIPE  358 (762)
T ss_pred             eccC
Confidence            9985

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.17  E-value=4.7e-05  Score=72.78  Aligned_cols=140  Identities=12%  Similarity=0.070  Sum_probs=93.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-+++++-.....+.++.++.- .+-+|-|.-.++++. |.+-.+             ......+.+.+..+....+|+|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I  193 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII  193 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            4567888898888888888764 456665554444333 332211             1123445667777889999999


Q ss_pred             EEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCHHHHHHcCcccee
Q 017069          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY  214 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~v  214 (378)
                      +.|-|.|.|||.-....||+++|.+++.++       +.++-|++..|.+--.. +.+.. ....+++.++++.|+||+|
T Consensus       194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~aa-e~~~ita~~l~~~g~iD~I  264 (319)
T PRK05724        194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEAA-EAMKITAQDLKELGIIDEI  264 (319)
T ss_pred             EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHHH-HHcCCCHHHHHHCCCceEe
Confidence            999999988877555569999999888765       33334444444433222 22221 1456899999999999999


Q ss_pred             cCCC
Q 017069          215 SVSE  218 (378)
Q Consensus       215 v~~~  218 (378)
                      ++..
T Consensus       265 I~Ep  268 (319)
T PRK05724        265 IPEP  268 (319)
T ss_pred             ccCC
Confidence            9853

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.16  E-value=0.00028  Score=65.15  Aligned_cols=156  Identities=12%  Similarity=0.018  Sum_probs=94.7

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      +|.-..|.=|.|..  .++.+-...+...+... +.+...-+|.|.-.. .|-.|..-             +.......+
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~a-------------E~~G~~~a~   93 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRRE-------------ELLGINQAL   93 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHH-------------HHHHHHHHH
Confidence            34434444445542  78888888888888885 455667766665542 23333221             222223333


Q ss_pred             HHHHHHHh---cCCCcEEEEEcceeechhh-cccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHh
Q 017069          120 YSFIYLLG---THLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  195 (378)
Q Consensus       120 ~~l~~~i~---~~~kP~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l  195 (378)
                      .++.+.+.   ..+.|+|+.|-|.++|||+ .+.+.+|.++|.+++.+       +..+.-+++..+.+-... +.++.-
T Consensus        94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~~~-~~e~a~  165 (238)
T TIGR03134        94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSVEE-LEALAK  165 (238)
T ss_pred             HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCHhH-HHHHHH
Confidence            44444444   5569999999999998876 55556888888766654       555555555555544432 222221


Q ss_pred             c--CCCCCHHHHHHcCccceecCCCCh
Q 017069          196 T--GAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       196 t--G~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                      +  -...+...+.+.|+||+|+++.+-
T Consensus       166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       166 SSPVFAPGIENFVKLGGVHALLDVADA  192 (238)
T ss_pred             hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence            1  124577789999999999997664

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.03  E-value=0.00016  Score=67.84  Aligned_cols=156  Identities=12%  Similarity=0.077  Sum_probs=97.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWEND----PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      |+++-.+..-..-++....-..+..+++.+.+|    ..+.+|.|.-.|     |..+.+-.        .....+. .+
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~--------~~L~~~a-~i  126 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEAN--------AGLIAIA-EI  126 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhH--------HHHHHHH-HH
Confidence            566666655566788888889999999988762    123466665533     33343211        0111111 11


Q ss_pred             HHHHHHHhcCCCcEEEEEcce--eechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH--H-HHHHH
Q 017069          120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  194 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~--~-a~~l~  194 (378)
                      ......+... +|+|+.+.|+  |+||+..++.+||++|+++++++++.           +...+....|.  . ..+-.
T Consensus       127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~  194 (274)
T TIGR03133       127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  194 (274)
T ss_pred             HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence            1122223334 9999999999  89999999999999999998877763           22223333332  1 33444


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEE  226 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~  226 (378)
                      |..+.+.+......|++|.+++++. +++..+
T Consensus       195 l~~~~lGG~~~~~sG~~D~~v~dd~-~a~~~~  225 (274)
T TIGR03133       195 LVWRTTGGKHRFLSGDADVLVEDDV-DAFRAA  225 (274)
T ss_pred             ccccccchHhHhhcccceEEeCCHH-HHHHHH
Confidence            4455567777888999999999754 334443

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.00  E-value=0.00011  Score=66.97  Aligned_cols=135  Identities=11%  Similarity=0.072  Sum_probs=90.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 017069           57 ALNTNMGAKLNKLFKAWENDP---NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH  133 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~---~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~  133 (378)
                      .+|..+..++...|..++..+   .+.+ .|-+.      |+++..                   ...++..+...+-||
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~l-yINSp------GGsv~a-------------------GlaIyd~m~~~~~~V  115 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISI-YINSP------GGSVYA-------------------GLGIYDTMQFISSDV  115 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEE-EEECC------Ccchhh-------------------HHHHHHHHHhcCCCE
Confidence            478888888888777776432   3333 33433      443321                   112445566788899


Q ss_pred             EEEEcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHHH---------------HhhcchH--H-HHHH
Q 017069          134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFL  193 (378)
Q Consensus       134 Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~r~~g~--~-a~~l  193 (378)
                      ...+.|.|.+.|.-|++++|.  |++.++++|.+-...-|......-...               +.+..|.  . ..+.
T Consensus       116 ~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~  195 (221)
T PRK14514        116 ATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD  195 (221)
T ss_pred             EEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999999996  999999999987765443221110100               1112232  1 3445


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      +-....++|+||+++||||+|+..
T Consensus       196 ~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        196 SDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             hhcCccCCHHHHHHcCCccEEeec
Confidence            566778999999999999999864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.99  E-value=0.00011  Score=65.80  Aligned_cols=140  Identities=12%  Similarity=0.032  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .++.++..++...|..++.++..+-+.+.=.    |.|+|+..-                   ..++..+...+-||...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence            4899999999999999875443333333222    444554321                   23445566788899999


Q ss_pred             EcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHH----H-----------HhhcchH--H-HHHHHhc
Q 017069          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF----Y-----------LSHLPGH--L-GEFLALT  196 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~----~-----------l~r~~g~--~-a~~l~lt  196 (378)
                      +.|.|.+.|.-|++++|.  |++.++++|.+....-|..-...-..    .           +.+..|.  . ..+++-.
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r  169 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR  169 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            999999999999999885  88999999988776533211111110    0           1111222  1 3444555


Q ss_pred             CCCCCHHHHHHcCccceecCCCC
Q 017069          197 GAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       197 G~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                      ...++|+||+++||||+|++...
T Consensus       170 d~~msa~EA~eyGliD~I~~~~~  192 (196)
T PRK12551        170 DFFMSPSEAVEYGLIDLVIDKRP  192 (196)
T ss_pred             CcCCCHHHHHHcCCCcEEeccCC
Confidence            66799999999999999998643

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.97  E-value=9.6e-05  Score=66.42  Aligned_cols=137  Identities=13%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .++.++...+...|-.++.++.-+  -|.|-      |.|+|+..-                   ..++..|...+-||.
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~G-------------------laIyd~m~~~~~~V~   89 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYAG-------------------LAIYDTMRYIKAPVS   89 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhhH-------------------HHHHHHHHhcCCCEE
Confidence            478899999988888887543222  22333      444554321                   234555677888999


Q ss_pred             EEEcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHHH-----------------HhhcchH--H-HHH
Q 017069          135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GEF  192 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~r~~g~--~-a~~  192 (378)
                      ..+.|.|.+.|.-|++++|-  |++.+++++.+.....|+.  +.....                 +.+..|.  . -..
T Consensus        90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~  167 (201)
T PRK14513         90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR  167 (201)
T ss_pred             EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999995  9999999999877765541  111111                 1112222  1 244


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                      ++-....++|+||+++||||+|+++...
T Consensus       168 ~~~rd~~msa~EA~eyGliD~I~~~~~~  195 (201)
T PRK14513        168 DMERDYFMSPEEAKAYGLIDSVIEPTRV  195 (201)
T ss_pred             HhccCcccCHHHHHHcCCCcEEeccCCC
Confidence            4555667999999999999999987543

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.96  E-value=6.5e-05  Score=72.55  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             CEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 017069           43 NSRMAILNRPSA--LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (378)
Q Consensus        43 ~v~~Itln~p~~--~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (378)
                      .|++|.++.+=-  .+.+..-..+.+.+.|+.+..|+.+++|+|.=.    |-|+....-                ..+.
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~  119 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIA  119 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHH
Confidence            466666654310  111112235566677888889999999988765    555544321                1223


Q ss_pred             HHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhh----------------
Q 017069          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH----------------  184 (378)
Q Consensus       121 ~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r----------------  184 (378)
                      +.++++..-. ||++.|++.|.-||.-++++||.+||++.+..|---+..+. |..  ...+.+                
T Consensus       120 ~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~  195 (317)
T COG0616         120 RALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDI  195 (317)
T ss_pred             HHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccc
Confidence            3334444444 99999999999999999999999999998876643333321 111  111110                


Q ss_pred             -----------------cc----------------hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCC
Q 017069          185 -----------------LP----------------GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       185 -----------------~~----------------g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                                       .+                ... ...-+.+|+-+++++|++.||||++...++
T Consensus       196 ~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~  264 (317)
T COG0616         196 LSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDD  264 (317)
T ss_pred             cCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHH
Confidence                             00                011 233567899999999999999999886543

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.93  E-value=6.6e-05  Score=72.30  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=93.8

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (378)
                      .+.|++|.++.+=..+ -...+-+++...++.+..+   ..|||+-.    |.|+.+.....                ..
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~----------------a~  144 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL----------------AA  144 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH----------------HH
Confidence            4679999988653211 1223445555555554433   46777665    44444432110                00


Q ss_pred             HHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccc------------cCccCC---------cc--
Q 017069          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AG--  177 (378)
Q Consensus       121 ~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g--  177 (378)
                      ....++....||+|+.+.+.|.-||+-++++||-+++.+.+.++.-.+-            +|+-+.         .+  
T Consensus       145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~p  224 (330)
T PRK11778        145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTL  224 (330)
T ss_pred             HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCC
Confidence            1123345678999999999999999999999999999998776654331            222100         00  


Q ss_pred             -------hHHHHhhcc---------------hHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          178 -------ASFYLSHLP---------------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       178 -------~~~~l~r~~---------------g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                             .-..+...+               +..-.+-+.+|+.+++++|++.||||++...+++
T Consensus       225 f~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        225 FGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence                   000111111               1111223568999999999999999999876554

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.87  E-value=0.00055  Score=65.09  Aligned_cols=150  Identities=14%  Similarity=0.117  Sum_probs=91.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      |+++-.+..-..-++.......+..+++.+.++.    -+.+|+|.-.|     |+.+.+-.        .....+. .+
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~--------~~L~~~a-~i  135 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEAN--------AGLAAIA-EI  135 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchH--------HHHHHHH-HH
Confidence            6666666665778899999999999999987664    15566665543     33333211        0111111 11


Q ss_pred             HHHHHHHhcCCCcEEEEEcce--eechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH--H-HHHHH
Q 017069          120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  194 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~--~-a~~l~  194 (378)
                      ...+..+... +|+|+.+.|+  |+||+...+.+||++|+++++.+++.           +...+....|.  . ..+-.
T Consensus       136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~  203 (301)
T PRK07189        136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  203 (301)
T ss_pred             HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence            2222223344 9999999999  99999999999999999998877653           11222222221  1 22222


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                      +..+.+.+......|.+|.+++++.
T Consensus       204 ~vw~~lGG~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        204 LVWRTTGGKHRYLSGLADALVDDDV  228 (301)
T ss_pred             ccccccCcceeeecccceEEeCCHH
Confidence            2222233334456899999998764

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.73  E-value=0.00097  Score=63.43  Aligned_cols=152  Identities=13%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             eeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHH
Q 017069           40 GKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (378)
Q Consensus        40 ~~~~-v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (378)
                      .+|. |+++-.|..-..-+++....+.+.++++.+... .+-+|.|.-.|     |+.+.+       +. ..+.++ ..
T Consensus       118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------gi-~sL~~~-ak  182 (292)
T PRK05654        118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------GL-LSLMQM-AK  182 (292)
T ss_pred             ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------hh-hHHHhH-HH
Confidence            3444 444444433367889999999999999998766 46778777544     332221       11 111111 12


Q ss_pred             HHHHHHHHhcCCCcEEEEEcceeechhh-cccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcC
Q 017069          119 LYSFIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG  197 (378)
Q Consensus       119 ~~~l~~~i~~~~kP~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG  197 (378)
                      ......++....+|.|+.+.|+|.||+. .+++.+|++||.+++.+++.-.+           .+...++.   ++  .-
T Consensus       183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e---~l--pe  246 (292)
T PRK05654        183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE---KL--PE  246 (292)
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh---hh--hh
Confidence            2233344556789999999999999965 45777999999998887763221           11111211   11  11


Q ss_pred             CCCCHHHHHHcCccceecCCCChhH
Q 017069          198 AKLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      +.-+++-+.+.|+||.|+++.++..
T Consensus       247 ~~~~ae~~~~~G~vD~Vv~~~e~r~  271 (292)
T PRK05654        247 GFQRAEFLLEHGAIDMIVHRRELRD  271 (292)
T ss_pred             hhcCHHHHHhCCCCcEEECHHHHHH
Confidence            1225667789999999999988754

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.70  E-value=0.00094  Score=63.26  Aligned_cols=151  Identities=12%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~-v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      +|. |+++-.|..-..-+++....+.+.++++.+.+. .+-+|.|...|++     -+.+       +. ..+.++ ...
T Consensus       118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~-ak~  182 (285)
T TIGR00515       118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------AL-LSLMQM-AKT  182 (285)
T ss_pred             CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------ch-hHHHhH-HHH
Confidence            443 555555544467789999999999999998765 4677877765443     2221       11 111111 122


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhh-cccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCC
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA  198 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~  198 (378)
                      .....++.....|.|+++.|+|.||+. .+++.+|++||.++|.+++.-.+           .+...+|..     +.-+
T Consensus       183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe~  246 (285)
T TIGR00515       183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPEG  246 (285)
T ss_pred             HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cchh
Confidence            223344566789999999999999965 45679999999999888774322           122222211     1111


Q ss_pred             CCCHHHHHHcCccceecCCCChhH
Q 017069          199 KLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       199 ~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      --+|+-+.+.|+||.|+++.++..
T Consensus       247 ~q~ae~~~~~G~vD~iv~~~~~r~  270 (285)
T TIGR00515       247 FQTSEFLLEHGAIDMIVHRPEMKK  270 (285)
T ss_pred             cCCHHHHHhCCCCcEEECcHHHHH
Confidence            225566778999999999987743

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0013  Score=64.98  Aligned_cols=148  Identities=9%  Similarity=0.138  Sum_probs=105.7

Q ss_pred             eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CCCCcccCCChhhHHHhhccCChHHHHHHHHH
Q 017069           40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (378)
Q Consensus        40 ~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (378)
                      .++.|.+|.++     +.+++.+.+.+.+.++.++++.. .+|||.= .++                        ...+.
T Consensus        24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPG------------------------Gl~~s   73 (436)
T COG1030          24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPG------------------------GLLDS   73 (436)
T ss_pred             cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCC------------------------chHHH
Confidence            34568888886     45899999999999999997763 2344332 111                        11334


Q ss_pred             HHHHHHHHhcCCCcEEEEE---cceeechhhcccccCCeEEEeCceEEeccccccCc---cCCcc-hHHHHh------hc
Q 017069          119 LYSFIYLLGTHLKPHVAIL---NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFYLS------HL  185 (378)
Q Consensus       119 ~~~l~~~i~~~~kP~Iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~l~------r~  185 (378)
                      +.++.+.+.+.+.|++..|   .+.|..+|.-++++||+..|.+.+.++-...-.+-   .+... ...++.      +.
T Consensus        74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~  153 (436)
T COG1030          74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE  153 (436)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence            6678888999999988887   34699999999999999999999999865543222   11111 122222      22


Q ss_pred             chH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 017069          186 PGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       186 ~g~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      -|.  . |.+++-....++++||++.|++|-+..+
T Consensus       154 ~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         154 RGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             cCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence            232  3 7888999999999999999999988764

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.59  E-value=0.0011  Score=62.85  Aligned_cols=148  Identities=14%  Similarity=0.174  Sum_probs=92.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-+|..-..-++....-+.+.++++.+.+.. +-+|++...|     |+-+.+       +. ..+.++.+ ....+
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-----GARmQE-------g~-~sL~qmak-~saa~  199 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-----GARMQE-------GS-LSLMQMAK-ISSAL  199 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----Cccccc-------cc-hhhhhhHH-HHHHH
Confidence            6666666655678899999999999999987654 6677777644     333322       11 11111111 11111


Q ss_pred             HH-HhcCCCcEEEEEcceeechhhcc-cccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCC
Q 017069          124 YL-LGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN  201 (378)
Q Consensus       124 ~~-i~~~~kP~Iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~  201 (378)
                      .. ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-.+           .+...+|..     +.-+-=+
T Consensus       200 ~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~-----lpe~fq~  263 (296)
T CHL00174        200 YDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT-----VPEGSQA  263 (296)
T ss_pred             HHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc-----CCccccc
Confidence            22 22467999999999999998755 667999999888877654221           111111110     0111124


Q ss_pred             HHHHHHcCccceecCCCChhH
Q 017069          202 GAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       202 a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      |+-.++.|+||.+|+..++..
T Consensus       264 ae~l~~~G~vD~iV~r~~lr~  284 (296)
T CHL00174        264 AEYLFDKGLFDLIVPRNLLKG  284 (296)
T ss_pred             HHHHHhCcCceEEEcHHHHHH
Confidence            666789999999999877643

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.25  E-value=0.0024  Score=59.34  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             EEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHH
Q 017069           37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF  116 (378)
Q Consensus        37 ~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~  116 (378)
                      .+++++.+..+.+  |- .+.++.+...++.++++....+..+ .++|.      +-|+++..                 
T Consensus        54 ~Ihrqe~~~~~gi--Pi-~~~I~i~dse~v~raI~~~~~~~~I-dLii~------TpGG~v~A-----------------  106 (285)
T PF01972_consen   54 LIHRQERVSFLGI--PI-YRYIDIDDSEFVLRAIREAPKDKPI-DLIIH------TPGGLVDA-----------------  106 (285)
T ss_pred             EEEeccccceecc--cc-ceeEcHhhHHHHHHHHHhcCCCCce-EEEEE------CCCCcHHH-----------------
Confidence            3444444444433  32 4678889999999999888776554 34444      33444432                 


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCc
Q 017069          117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA  176 (378)
Q Consensus       117 ~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~  176 (378)
                        ..++...+.+++.|+++.|+..|+.+|.-++++||-+++.+++.+|--+.++|-.|..
T Consensus       107 --A~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  107 --AEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA  164 (285)
T ss_pred             --HHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence              1234455677899999999999999999999999999999999999999999987743

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.25  E-value=0.00027  Score=61.00  Aligned_cols=94  Identities=16%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             hcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccc------------cCc---------cCCcc--------
Q 017069          127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGF---------HPDAG--------  177 (378)
Q Consensus       127 ~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl---------~p~~g--------  177 (378)
                      ....|||||.++|.|..+|+-++.+||-+++.+.+.++..-+.            +|+         .-..+        
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~   82 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE   82 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence            4678999999999999999999999999999998777654332            222         11111        


Q ss_pred             -hHHHHhhcc-----------------hHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          178 -ASFYLSHLP-----------------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       178 -~~~~l~r~~-----------------g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                       .-..+.+.+                 .....+-+..|..+++++|++.||||++...+++
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~  143 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence             111111111                 1111222578999999999999999999865544

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.24  E-value=0.01  Score=61.12  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=97.0

Q ss_pred             EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHH
Q 017069           48 ILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL  126 (378)
Q Consensus        48 tln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  126 (378)
                      .-|+|. ..-+++........+.++.++.. .+-+|.|.-.++ |..|.+-             +....+....+++..+
T Consensus       320 vAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~-------------E~~g~~~~~a~~~~a~  384 (512)
T TIGR01117       320 IANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQ-------------EYGGIIRHGAKVLYAY  384 (512)
T ss_pred             EEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHH-------------HHHHHHHHHHHHHHHH
Confidence            334443 45569999999999999988764 566776665443 5544331             1223344555677788


Q ss_pred             hcCCCcEEEEEcceeechhhcccc----cCCeEEEeCceEEeccccccCccCCcchHHHHh-hcch----HH-HHH--H-
Q 017069          127 GTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPG----HL-GEF--L-  193 (378)
Q Consensus       127 ~~~~kP~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~g----~~-a~~--l-  193 (378)
                      ....+|.|+.|-|.+.|||+.-..    .+|+++|.+++.++       +.++-+++..+. +.+.    .. +..  + 
T Consensus       385 ~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~  457 (512)
T TIGR01117       385 SEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKIA  457 (512)
T ss_pred             HhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHHH
Confidence            889999999999999888654332    38998888887665       333333333332 2111    01 111  1 


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      -..-+..++..+.+.|+||.|+++.+...
T Consensus       458 ~~~~~~~~~~~~a~~g~vD~VI~P~~tR~  486 (512)
T TIGR01117       458 EYREEFANPYKAAARGYVDDVIEPKQTRP  486 (512)
T ss_pred             HHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence            11223457889999999999999987643

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.22  E-value=0.0055  Score=62.90  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=92.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC--ChhhHHHhhccCChHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTLYS  121 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~  121 (378)
                      |.++-.+..-...+++......+..+++.+.++. +-+|.|.-     |+|.  ++.+-..        ....+-. +..
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~-i~~  123 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGR-IFR  123 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHH-HHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHH-HHH
Confidence            5555555555678899999999999999988764 55565554     4444  4443221        1112222 222


Q ss_pred             HHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCC
Q 017069          122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL  200 (378)
Q Consensus       122 l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~  200 (378)
                      -...+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+.+.-.           ..+.          ..+|+.+
T Consensus       124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP-----------~vv~----------~~~Ge~~  181 (493)
T PF01039_consen  124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP-----------RVVE----------SATGEEV  181 (493)
T ss_dssp             HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH-----------HHHH----------HHHSSCT
T ss_pred             HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc-----------cccc----------cccCccc
Confidence            2334455 9999999999999999999999999999997 77664311           1111          2457888


Q ss_pred             CHHHH-------HHcCccceecCCCC
Q 017069          201 NGAEM-------MACGLATHYSVSEK  219 (378)
Q Consensus       201 ~a~eA-------~~~Glv~~vv~~~~  219 (378)
                      +.++.       ..-|.+|.++++++
T Consensus       182 ~~~~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  182 DSEELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             SHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred             cchhhhhhhhhcccCCCceEEEechH
Confidence            87764       46899999998754

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.21  E-value=0.003  Score=66.07  Aligned_cols=85  Identities=13%  Similarity=-0.062  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcce
Q 017069           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (378)
Q Consensus        61 ~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~  140 (378)
                      -.+.++.++|+.+.+|+.|++|||.-.+   +.|+++..+                ..+.+.+..+....|||||..+++
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~  136 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY  136 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence            3577999999999999999999999763   224433321                112223334455789999988877


Q ss_pred             eechhhcccccCCeEEEeCceEEec
Q 017069          141 TMGGGAGVSIPGTFRVACGKTVFAT  165 (378)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~  165 (378)
                      + -+|+-++.+||-+++.+.+.+++
T Consensus       137 ~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       137 S-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             c-chhhhhhhhCCEEEECCCceEEe
Confidence            5 57899999999999999877754

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.19  E-value=0.0041  Score=55.51  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=66.8

Q ss_pred             HHHHHhcCCCcEEEEEcceeechhhcccccCCeE--EEeCceEEeccccccCccCCcchHHH-Hhh-c------------
Q 017069          122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-LSH-L------------  185 (378)
Q Consensus       122 l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~-l~r-~------------  185 (378)
                      ++..+...+.||...+-|.|...|..|++++|..  ++.+++++-.....-|+ -+...=.. -.+ +            
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G~a~Di~i~A~ei~~~~~~l~~i~a  155 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QGQASDIEIHAREILKIKERLNRIYA  155 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-ccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677999999999999999999999999986  99999988876666332 22111000 000 1            


Q ss_pred             --chHH---HHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          186 --PGHL---GEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       186 --~g~~---a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                        -|..   -....-....++|+||+++||||+|....+.
T Consensus       156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence              1111   1222334556899999999999999987553

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.99  E-value=0.013  Score=53.33  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=88.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           59 NTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        59 ~~~~~~eL~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      +.++.+.+...|-.++.++..+  -+-|-+.|+...+|-=+...                .....++..+...+-||...
T Consensus        50 ~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~Tv  113 (222)
T PRK12552         50 GMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVHTI  113 (222)
T ss_pred             hHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeEEE
Confidence            3448888888777776543222  34455556554444100000                01123444566677889999


Q ss_pred             EcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHHHHh------------------hcchH--H-HHHH
Q 017069          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFYLS------------------HLPGH--L-GEFL  193 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~~g~--~-a~~l  193 (378)
                      +-|.|.+.+.-|++++|-  |++.++++|.+.....|..   |.+.-+.                  ..-|.  . -...
T Consensus       114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d  190 (222)
T PRK12552        114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD  190 (222)
T ss_pred             EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999995  8999999999877664532   2211111                  11111  1 1233


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCC
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      +-....++|+||+++||||+|+.+.
T Consensus       191 ~~rd~wmsA~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        191 TDRMFYLTPQEAKEYGLIDRVLESR  215 (222)
T ss_pred             hcCCCcCCHHHHHHcCCCcEEeccC
Confidence            3444569999999999999999754

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.67  E-value=0.019  Score=59.11  Aligned_cols=139  Identities=15%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-+.-+++......+.++++.+.++. +-+|.|.-.|     |+.+.+-.        .....+...+... 
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~--------~~l~~~~~~~~~~-  148 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAV--------DALKGYGDIFYRN-  148 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccc--------hhhhhHHHHHHHH-
Confidence            5555555544678899999999999999988765 5566665533     33332100        0001111111111 


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCce-EEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                       ...+-.+|.|+++.|+|.||+......||++|+++++ .+.+.           +...+..          .+|+.+++
T Consensus       149 -~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~  206 (512)
T TIGR01117       149 -TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA  206 (512)
T ss_pred             -HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence             1123458999999999999998777799999999964 44431           1111111          34555555


Q ss_pred             HHH-------HHcCccceecCCCC
Q 017069          203 AEM-------MACGLATHYSVSEK  219 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~~  219 (378)
                      ++.       ..-|.+|.++++++
T Consensus       207 e~lGGa~~h~~~sGv~d~~~~de~  230 (512)
T TIGR01117       207 EQLGGAMAHNSVSGVAHFIAEDDD  230 (512)
T ss_pred             hhcchHHHhccccceeEEecCChH
Confidence            554       25899999887654

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.54  E-value=0.0025  Score=59.41  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCC
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK  199 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~  199 (378)
                      .+-+..+.++++|+||.|=|---+||+-=...+|.+.|-++++|+.      +.|.++++.+|..---..  + +-....
T Consensus       178 A~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~ka~--e-AAe~mk  248 (317)
T COG0825         178 ARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASKAK--E-AAEAMK  248 (317)
T ss_pred             HHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhhhH--H-HHHHcC
Confidence            3344557889999999998886555544344589999999999883      567776666554432222  1 123458


Q ss_pred             CCHHHHHHcCccceecCC
Q 017069          200 LNGAEMMACGLATHYSVS  217 (378)
Q Consensus       200 ~~a~eA~~~Glv~~vv~~  217 (378)
                      ++|++.+++|+||.|+|.
T Consensus       249 ita~dLk~lgiID~II~E  266 (317)
T COG0825         249 ITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             CCHHHHHhCCCcceeccC
Confidence            999999999999999985

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.52  E-value=0.046  Score=56.84  Aligned_cols=143  Identities=13%  Similarity=0.106  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-+.-+++......+.++++.+.+.. +-+|.|.-.|+.+-.+ ....+.         ....+ ..+..-.
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~-g~if~~~  198 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHF-GRIFYNQ  198 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHH-HHHHHHH
Confidence            5555555444678999999999999999987664 5677666544333211 000000         00011 1111122


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      ..+....+|.|++|.|+|.|||.....+||++|++++ +.+.+.           +...+.          ..+|+.+++
T Consensus       199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV~----------~~~Ge~v~~  257 (569)
T PLN02820        199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLVK----------AATGEEVSA  257 (569)
T ss_pred             HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHHH----------hhcCcccCH
Confidence            2345567999999999999999999999999999874 545431           111111          245666666


Q ss_pred             HHHH-------HcCccceecCCCC
Q 017069          203 AEMM-------ACGLATHYSVSEK  219 (378)
Q Consensus       203 ~eA~-------~~Glv~~vv~~~~  219 (378)
                      ++.-       .-|.+|.+++++.
T Consensus       258 eeLGGa~~h~~~sGv~d~~~~de~  281 (569)
T PLN02820        258 EDLGGADVHCKVSGVSDHFAQDEL  281 (569)
T ss_pred             HHhCCHHHhcccccccccccCchH
Confidence            6552       4788888887654

>PRK10949 protease 4; Provisional

Probab=96.44  E-value=0.042  Score=57.77  Aligned_cols=85  Identities=15%  Similarity=0.033  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcce
Q 017069           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (378)
Q Consensus        61 ~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~  140 (378)
                      -.+.++.++|+.+..|+.|++|||.-.+.   .|..+..+                ..+.+.+..+....|||||.-+.+
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~  155 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY  155 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc
Confidence            34568999999999999999999998631   12222111                112233334456789999964444


Q ss_pred             eechhhcccccCCeEEEeCceEEec
Q 017069          141 TMGGGAGVSIPGTFRVACGKTVFAT  165 (378)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~  165 (378)
                       --+|+-|+.+||-+++.+.+.+++
T Consensus       156 -~s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        156 -SQGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             -cchhhhhhhhCCEEEECCCceEEE
Confidence             456899999999999999776654

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=96.37  E-value=0.058  Score=50.10  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=96.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+...++..--.-.|..-.=+.+..+++.+-++ .+.+|+++..|     |+-+.+-.        -.+.+ .......+
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSG-----GARMQEg~--------lSLMQ-MaktsaAl  188 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASG-----GARMQEGI--------LSLMQ-MAKTSAAL  188 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCc-----chhHhHHH--------HHHHH-HHHHHHHH
Confidence            555666655456778888888899999888765 47889988754     33333211        01111 12233445


Q ss_pred             HHHhcCCCcEEEEEcceeech-hhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~Gg-G~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      .++.....|.|+.+..+..|| -+.+++..|+.||.++|.++|.-.++           +-..++..    +-.| -=++
T Consensus       189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IEQTire~----LPeg-fQ~a  252 (294)
T COG0777         189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IEQTIREK----LPEG-FQTA  252 (294)
T ss_pred             HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-----------hhhhhccc----CCcc-hhhH
Confidence            566778999999999999988 46889999999999888887754331           11111100    0000 1146


Q ss_pred             HHHHHcCccceecCCCChh
Q 017069          203 AEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       203 ~eA~~~Glv~~vv~~~~l~  221 (378)
                      +-.++.|+||.||+..++.
T Consensus       253 EfLlehG~iD~iv~R~elr  271 (294)
T COG0777         253 EFLLEHGMIDMIVHRDELR  271 (294)
T ss_pred             HHHHHcCCceeeecHHHHH
Confidence            6778999999999987664

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=94.53  E-value=0.4  Score=49.29  Aligned_cols=154  Identities=17%  Similarity=0.168  Sum_probs=91.4

Q ss_pred             EEEcCCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 017069           47 AILNRPSAL-NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (378)
Q Consensus        47 Itln~p~~~-Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (378)
                      |.=|+|... -+++.+-.....+.++.++. .++-+|.|.-. ..|..|-.             .+.....+...+++..
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~-------------~E~~g~~~~ga~~~~a  362 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPE-------------AERAGIIRAGARLLYA  362 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHH-------------HHHTTHHHHHHHHHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccch-------------hhhcchHHHHHHHHHH
Confidence            444555422 26999999999999988886 45777777653 33544432             2223345666778888


Q ss_pred             HhcCCCcEEEEEcceeechhhcccccC----CeEEEeCceEEeccccccCccCCcchHHHHhhcchH---------H---
Q 017069          126 LGTHLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---------L---  189 (378)
Q Consensus       126 i~~~~kP~Iaav~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~---------~---  189 (378)
                      +..+.+|+|..|-|.++|||..-....    |+++|.+++.++       +.++.+++..+.+.--.         .   
T Consensus       363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~  435 (493)
T PF01039_consen  363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQR  435 (493)
T ss_dssp             HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred             HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHH
Confidence            999999999999999999877443333    788777776665       44444443333321100         0   


Q ss_pred             HHHHHh-cCCCCCHHHHHHcCccceecCCCChhH
Q 017069          190 GEFLAL-TGAKLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       190 a~~l~l-tG~~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      ...+-- .-+..++..+...|++|.|+++.+...
T Consensus       436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~  469 (493)
T PF01039_consen  436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK  469 (493)
T ss_dssp             HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred             HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence            011111 112257889999999999999987643

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=94.05  E-value=0.092  Score=52.38  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh---hcCCCCCCCCCCC
Q 017069          293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR---MVDRDIAPKVPFH  364 (378)
Q Consensus       293 ~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af---l~ek~r~P~~~~~  364 (378)
                      +++++++..+|.++..+|+.++... ......+..+...+..++.   ++|+.|++.+|   . +| |.|.|..+
T Consensus       228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~-~k-r~~~wa~~  296 (401)
T PLN02157        228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEA-GR-RKDTWCIT  296 (401)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhh-cc-cchHHHHH
Confidence            4678888889999999999997652 3456677778888888887   99999999999   6 66 78888654

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.69  E-value=0.31  Score=49.78  Aligned_cols=102  Identities=11%  Similarity=0.000  Sum_probs=65.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      +...--+.+-+.-++..-....+..+.+.+.++..-.+.+..+.|      +.+.+=.        .. ...+..++.-.
T Consensus        93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v--------~~-l~g~g~iF~~~  157 (526)
T COG4799          93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGV--------PS-LAGYGRIFYRN  157 (526)
T ss_pred             EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCc--------cc-cccchHHHHHH
Confidence            333334445577788888888888888888776544444555443      3332210        00 00111222222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCce
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT  161 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a  161 (378)
                      .++... +|.|++|-|+|.|||.-+...||++|+.++.
T Consensus       158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            333444 9999999999999999999999999999984

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=92.91  E-value=3.2  Score=43.39  Aligned_cols=143  Identities=14%  Similarity=0.088  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -+++.+-.....+.++.++. -++-+|.|.-.. .|..|.+-.             .....+...+++..+....+|.|+
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p-Gf~~G~~~E-------------~~G~~~~~a~l~~A~a~~~VP~is  444 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT-GFMVGSRSE-------------ASGIAKAGAKMVMAVACAKVPKIT  444 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC-CCCCCHHHH-------------HhhHHHHHHHHHHHHHhCCCCEEE
Confidence            45788888888888888775 456777665542 355554322             123456677888888999999999


Q ss_pred             EEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHhhc-c------h------HH-H-HH-H-H
Q 017069          136 ILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------G------HL-G-EF-L-A  194 (378)
Q Consensus       136 av~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~------g------~~-a-~~-l-~  194 (378)
                      .|-|.++|+|..-.    +..|++++.+++.       +|+.++.|+...+.+. +      |      .. + .. + -
T Consensus       445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A~-------i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  517 (569)
T PLN02820        445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNAR-------IGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE  517 (569)
T ss_pred             EEECCcchHHHHHhcCcCCCCCEEEECCCCe-------EEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence            99999999865333    3567777776555       4555555555544431 1      0      00 0 00 0 1


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCCh
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                      ..-+..++-.|-+.|+||.|+++.+.
T Consensus       518 ~~~~~~~p~~aa~~~~vD~VIdP~dT  543 (569)
T PLN02820        518 AYEREANPYYSTARLWDDGVIDPADT  543 (569)
T ss_pred             HHHHhCCHHHHHHcCCcCcccCHHHH
Confidence            11224567778899999999998765

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.98  E-value=0.72  Score=42.58  Aligned_cols=133  Identities=14%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .++.++-+.+...|-.++.++.-|=+.+.=.    |-|+++..                   ...++.++..++-||-..
T Consensus       100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~Ti  156 (275)
T KOG0840|consen  100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVSTI  156 (275)
T ss_pred             cCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCceee
Confidence            4788888888888888877665565554433    44444321                   112333445555666555


Q ss_pred             EcceeechhhcccccCCeEEEeCceEEeccccccCcc-CCcc----hHHHHh---hcchH---H-HHHHHhcC-------
Q 017069          137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAG----ASFYLS---HLPGH---L-GEFLALTG-------  197 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g----~~~~l~---r~~g~---~-a~~l~ltG-------  197 (378)
                      +-|.|.+-|.-|..+     ++.+-++++|..++=+- |.+|    ..-...   .++-.   . -.+.-.||       
T Consensus       157 c~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~  231 (275)
T KOG0840|consen  157 CVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE  231 (275)
T ss_pred             ehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            667776665544433     23455555555554332 2221    111111   11100   0 11122344       


Q ss_pred             ------CCCCHHHHHHcCccceecCC
Q 017069          198 ------AKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       198 ------~~~~a~eA~~~Glv~~vv~~  217 (378)
                            +.++|+||+++||||+|+..
T Consensus       232 ~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  232 KDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             hhhcccccCCHHHHHHhcchhhhhcC
Confidence                  45899999999999999863

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=89.50  E-value=5  Score=41.24  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 017069           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (378)
Q Consensus        47 Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (378)
                      |.=|.|. ..-.|+.+-...-.+.++ +....++-.|.|.-. ..|..|-|...             ....+.-.+++.+
T Consensus       328 iIANqp~~~~G~l~~~sa~KaArFI~-~cd~~~iPlv~L~d~-pGFm~G~~~E~-------------~giik~Gakl~~A  392 (526)
T COG4799         328 IIANQPRHLGGVLDIDSADKAARFIR-LCDAFNIPLVFLVDT-PGFMPGTDQEY-------------GGIIKHGAKLLYA  392 (526)
T ss_pred             EEecCccccccccchHHHHHHHHHHH-hhhccCCCeEEEeCC-CCCCCChhHHh-------------ChHHHhhhHHHhh
Confidence            3344454 456789998888888884 444456777776544 56888876432             3345556778889


Q ss_pred             HhcCCCcEEEEEcceeechhhcc----cccCCeEEEeCceEEeccccccCccCCcchHHHHhh-cchHH-H--H-H----
Q 017069          126 LGTHLKPHVAILNGVTMGGGAGV----SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL-G--E-F----  192 (378)
Q Consensus       126 i~~~~kP~Iaav~G~a~GgG~~l----al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g~~-a--~-~----  192 (378)
                      +....+|.|..|-|-++|||...    ++.+|+.+|.+++.+       |+.-+-|+.-.+.+ .+... .  . +    
T Consensus       393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~i-------aVMG~egAv~i~~~k~l~~~~~~~~~~~~~~  465 (526)
T COG4799         393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEI-------AVMGPEGAVSILYRKELAAAERPEEREALLR  465 (526)
T ss_pred             HhhccCCeEEEEecccccceeeeecCccCCCceeEecCccee-------eecCHHHHHHHHHHHHhhcccCchhHHHHHH
Confidence            99999999999999999998644    334566665555554       44433444444443 22111 0  0 0    


Q ss_pred             --H--HhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          193 --L--ALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       193 --l--~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                        +  -..-+-.++--|.+.|++|.|+++.+.
T Consensus       466 ~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~t  497 (526)
T COG4799         466 KQLIAEYEEQFSNPYYAAERGYIDAVIDPADT  497 (526)
T ss_pred             HHHHHHHHHhccchHHHHHhCCCCcccCHHHH
Confidence              0  011122455567789999999988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		8e-61
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		1e-42
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		3e-33
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		4e-30
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		6e-16
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		3e-14
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		4e-14
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		4e-14
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-14
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-14
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		5e-14
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-14
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		6e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		1e-13
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		6e-13
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-12
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		8e-12
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-11
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-11
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-11
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-11
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		9e-11
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-10
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-10
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		3e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-09
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		6e-09
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-08
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		2e-08
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		3e-08
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-08
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		3e-08
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-07
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		1e-07
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-07
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		3e-07
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-07
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-07
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-06
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-06
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-06
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		2e-06
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		2e-06
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-06
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		3e-06
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		4e-06
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		4e-06
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		5e-06
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		6e-06
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-06
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-05
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		8e-05
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-04
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		2e-04
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		3e-04
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		3e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		4e-04
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		9e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  230 bits (587), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 194/334 (58%), Gaps = 12/334 (3%)
Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-R 89
           D   +VL+  K  + +  LNRP  LNAL  N   ++    K WE DP    + +KG+G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 90  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149
           AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+T GGG G+S
Sbjct: 63  AFCAGGDIRVISE-AEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLS 121
Query: 150 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 209
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181
Query: 210 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIHR-IDIVDKC 266
           +ATH+  SEKL  +EE+L  L +     I + LE Y     +  DK+ ++    D ++ C
Sbjct: 182 IATHFVDSEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSC 241
Query: 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 326
           F  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDGS----SFALEQLKVINKXSPTSLKITLRQLXEGSSKTLQEVLT 297
Query: 327 REYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
            EYR+S Q   R    DF+EGVRA ++D+D +PK
Sbjct: 298 XEYRLS-QACXR--GHDFHEGVRAVLIDKDQSPK 328

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 178/329 (54%), Gaps = 18/329 (5%)
Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
             VLV  +    +  LNRP A+N+L   M   + +   AWEND ++  V + G+G R  C
Sbjct: 9   EDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLC 68
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AGGD+V++YH   +    E + F+   Y     +G + KP+V+I++G+ MGGG GV   G
Sbjct: 69  AGGDVVAIYHSA-KADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHG 127
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
             RV    T  A PE  IGF PD G ++ LS  PG LG   ALTGA  +GA+ +  G A 
Sbjct: 128 NVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAIVMGFAD 187
Query: 213 HYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272
           HY   +K+    +E  + V  D   ++A L  ++    P  + +  +   +D+C+  DTV
Sbjct: 188 HYVPHDKI----DEFTRAVIADG--VDAALAAHAQ--EPPASPLAEQRSWIDECYTGDTV 239
Query: 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIRE-GRFQTFDECLVREYRM 331
            +II +L +     + P  G    L+   SP++L V+L S+R   + Q+ ++ L +EYR+
Sbjct: 240 ADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRV 295
Query: 332 SLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           S    + L S D  EG+RA++VD+D  PK
Sbjct: 296 S---CASLKSHDLVEGIRAQLVDKDRNPK 321

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 158/341 (46%), Gaps = 35/341 (10%)
Query: 26  SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK 85
            S +D L  +V   G+       L+RP+ALNAL      +++   + W  DP +  V + 
Sbjct: 21  QSXSDVLIRKVRRAGRIT-----LSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVID 75
Query: 86  GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
             G RAFCAGGDI  L+     G     +DF+R  Y     +    KP V++  G T GG
Sbjct: 76  AEGPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGG 135
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204
           G G+      R+    +  + PE  IG  PD G +  L+  PG +G +L LTGA+    +
Sbjct: 136 GVGLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPGRIGVWLGLTGARXGPGD 195
Query: 205 MMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI---- 260
            +  G A  + V E              D P +I A LE   DL  PD  +   R+    
Sbjct: 196 AIFAGFADRF-VPE-------------ADWPDLI-AALEG-GDLALPDHAAPEGRLPVLQ 239
Query: 261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI-REGRFQ 319
           D +D+ F   T+ EI   LE+     + P     L+ L+ +SPL+L  +L  + R G   
Sbjct: 240 DEIDRLFA-GTLAEIPARLEA----TDTPLAAEALKALRRSSPLALAATLEILQRLGPSA 294
Query: 320 TFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
              E L  EYR + +   +    DF EG+RA ++D+D +P+
Sbjct: 295 GIREALDLEYRFTYRAQGQ---ADFLEGIRAAIIDKDRSPR 332

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 154/333 (46%), Gaps = 25/333 (7%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYH-- 102
           +  LN   ALNAL+ +           W+ DP I  V + GSG +AFCAGGD+ +LYH  
Sbjct: 54  VVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHAS 113
Query: 103 FMNQGKLEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
              +G++ E  K FF   Y   YLL T+ KP +   +G+  GGG G+    + +V    +
Sbjct: 114 VAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETS 173
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 221
             A PE  IG +PD G S++L+  PG  G FL LT    N A+    GLA HY   +   
Sbjct: 174 RIAXPEVTIGLYPDVGGSYFLNRXPGKXGLFLGLTAYHXNAADACYVGLADHYLNRDDKE 233
Query: 222 LIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLE 280
           L  +    L  +D P++    L+          N + +++DI      L   +E ID L 
Sbjct: 234 LXFDAXATLDWSDSPALNHQRLDTXI-------NELSNQVDIPKGDSVLAESQEXIDRLX 286
Query: 281 S---------EASLIND-PWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR 330
           +          ++L  D  W           SP+S  ++    + G   +  +C   E  
Sbjct: 287 AGSLTDIVTRXSTLSTDEAWLSKACATXLAGSPISWHLAYIQTQLGTKLSLAQCFKWELT 346
Query: 331 MSLQGVSRLISGDFYEGVRARMVDRDIAPKVPF 363
           +S+   ++   GDF EGVRA ++D+D  PK  F
Sbjct: 347 VSVNVCAK---GDFCEGVRALLIDKDKQPKWQF 376

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 40  GKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           GK N+   I LNRP ALNAL   +  +LN+  K +E DP +G + + G  +AF AG DI 
Sbjct: 38  GKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIK 97
Query: 99  SLYHFMNQGKLEECKDFFRTLYSFIYL-----LGTHLKPHVAILNGVTMGGGAGVSIPGT 153
            + +             F+  YS  +L     L    KP +A +NG   GGG  +++   
Sbjct: 98  EMQNLS-----------FQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCD 146
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 212
              A  K  FA PE LIG  P AG +  L+   G  L   + LTG +++  +    GL +
Sbjct: 147 IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVS 206
Query: 213 HYSVSEKLPLIEEEL 227
                E   L+EE +
Sbjct: 207 KICPVE--TLVEEAI 219

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 39  EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           E K       LNRP  LNA    M A++ K  K    DPN+  V + G+GRAFCAG D+ 
Sbjct: 8   EVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLS 67
Query: 99  SLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVA 157
            +   M+ G      D  R+ Y+ +     HL KP VA +NG   G G  +++   FR+ 
Sbjct: 68  GVTEEMDHG------DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLL 121
Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 201
             K  FA     +G  PDAG  +YL  L G      LA+ G K+ 
Sbjct: 122 SEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 78  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 128
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 129 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 183
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 184 PVETLVEEAI 193

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 20  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 75
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 76  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 126
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 127 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 181
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 182 PVETLVEEAI 191

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 6   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 65
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 66  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 119
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 120 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179
Query: 215 SVSEKL 220
             ++ L
Sbjct: 180 VPADDL 185

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 7   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 66
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 67  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 120
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 121 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 180
Query: 215 SVSEKL 220
             ++ L
Sbjct: 181 VPADDL 186

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 23  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 78
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 79  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 129
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 130 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 184
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 185 PVETLVEEAI 194

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 87  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 140
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 200
Query: 215 SVSEKL 220
             ++ L
Sbjct: 201 VPADDL 206

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSM 84
           + ++T+      +VE + N  +  ++RP A NA+N  +   +    +  + DP +  V +
Sbjct: 6   AETLTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVI 65
Query: 85  KGSG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
            G+G ++FCAG D+ ++    N    E  +  F   ++ FI       KP +A +NG  +
Sbjct: 66  TGAGDKSFCAGADLKAISRGENLYHAEHPEWGFAGYVHHFID------KPTIAAVNGTAL 119
Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLN 201
           GGG+ +++     +AC    F  PE   G    AG  F +   LP  +   L LTG  + 
Sbjct: 120 GGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMT 179
Query: 202 GAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACL 242
            ++ +  GL     ++E +P            D +V+EA L
Sbjct: 180 ASDALRWGL-----INEVVP------------DGTVVEAAL 203

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL E +    +  LNRP  LNA+   +   L    K  E D  +  + + G+GRAF AG 
Sbjct: 2   VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQ 61
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D   L  F ++    + +   R     +  L    KP V  +NGV  G G  +++ G  R
Sbjct: 62  D---LTEFGDRKP--DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLR 116
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHY 214
           +A     F T    IG  PD+G SF L  L G    + L L   +L+  E +A GL    
Sbjct: 117 LAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRV 176
Query: 215 SVSEKLPLIEEEL 227
             +EK  L+EE L
Sbjct: 177 VPAEK--LMEEAL 187

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 19/211 (9%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL+  M A++    +A++ +  +  + + G GRAF AG DI  +    +  +
Sbjct: 20  LARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK-DDPIR 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           LE    F    +  + ++ T   P +A +NG+ +GGG  +++     VA     F  PE 
Sbjct: 79  LEWLNQF--ADWDRLSIVKT---PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEV 133
Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
            +G  P AG +  L+ L  P    E+L  TGA+++  E    G+     VS +L L+EE 
Sbjct: 134 NLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSAKEAEQLGIVNRV-VSPEL-LMEET 190
Query: 227 L---GKLVTDDP---SVIEACLEKYSDLVYP 251
           +   G+L    P    +I+  ++K  D  YP
Sbjct: 191 MRLAGRLAEQPPLALRLIKEAVQKAVD--YP 219

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 20/233 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP ALNALN  + A++    + ++ D  IG + + GS RAF AG DI  +        
Sbjct: 25  LDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQA 84
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E      R L S    L    KP VA + G  +GGG  +++     +A     F  PE 
Sbjct: 85  RE------RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEI 138
Query: 169 LIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH-----------YSV 216
            +G  P  G +  L+   G      L LTG  L   E    GL +             +V
Sbjct: 139 TLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAV 198
Query: 217 SEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269
           ++++  +    G+ V D  ++ EA     S  +  ++++     D  D+  G+
Sbjct: 199 AQRIARMSRPAGRAVKD--AINEAFERPLSAGMRYERDAFYAMFDTHDQTEGM 249

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 87  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 203
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 204 EMMACGL 210
                GL
Sbjct: 176 AARDWGL 182

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 3/197 (1%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73
Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
               + G+GRAF AGGD   L        L       R     +  +     P VA +NG
Sbjct: 74  RAAVITGAGRAFSAGGDFGYLKELSADADLR--AKTIRDGREIVLGMARCRIPVVAAVNG 131
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSHLPGHLGEFLALTGA 198
             +G G  +               A P   +G    D G   +  H+   L +  ALTG 
Sbjct: 132 PAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGT 191
Query: 199 KLNGAEMMACGLATHYS 215
           +++    +  GLA H +
Sbjct: 192 RISAQRAVELGLANHVA 208

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 87  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 203
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 204 EMMACGL 210
                GL
Sbjct: 176 AARDWGL 182

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 6/178 (3%)
Query: 45  RMAILNRPSALNALNTNM-GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHF 103
           R   LNRP ALNA N  +  A    L  A  +DP +  V + GSGR F AG D+  +   
Sbjct: 17  RTLTLNRPEALNAFNEALYDATAQALLDA-ADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75
Query: 104 MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           +      E K  FR L   I  L    KP +  +NG+ +G GA +               
Sbjct: 76  ITDPNFSEGKFGFRGL---IKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL 132
Query: 164 ATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
             P T +G  P+A +S+ L  L G     +L ++   ++  E +  GL       E+L
Sbjct: 133 KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEEL 190

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP  LNA++T M  +L+   +  E D ++  V + G+GRAFC+GGD   L      G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGD---LTGGDTAGA 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSLP-------KPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130
Query: 169 LIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
            +G  PD GAS  L  L G      +A+T  K++ A     G+ +H + +++   +  ++
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDV 190
Query: 228 GKLVTDDPSV 237
            + V+  P++
Sbjct: 191 LRSVSGGPTL 200

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 4/182 (2%)
Query: 33  CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
             ++LVE      +  +NRP   NAL+TNM ++    +   ++D  I    + G+G A+C
Sbjct: 8   ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYC 67
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
            GGD+   +  +  G          T+   + L  T  KP +A +NG  +GGG  +    
Sbjct: 68  VGGDLSDGW-MVRDGSAPPLDPA--TIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQT 124
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGAEMMACGLA 211
             RV+     F  PE   G  P AG+   L   +P      + LTG  L   E    GL 
Sbjct: 125 DIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLV 184
Query: 212 TH 213
            H
Sbjct: 185 GH 186

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL-ALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWE---NDPNIGFVSMKGSGRAFC 92
            LVE + ++ +  +NRPS  NAL+  M   +  + +AW+   NDP+I    + G+G  FC
Sbjct: 22  ALVEQRGHTLIVTMNRPSRRNALSGEM---MQIMVEAWDRVDNDPDIRCCILTGAGGYFC 78
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL-GTHL-KPHVAILNGVTMGGGAGVSI 150
           AG D   L     +   +  KD          LL G  L KP +A + G  + GG  +  
Sbjct: 79  AGMD---LKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135
Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 209
               RVA     F   E     +P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195
Query: 210 LATH 213
           L  H
Sbjct: 196 LVGH 199

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+A NALN  +  +L    +A   D +I    + G+ R F AG D+  +        
Sbjct: 20  LNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAE------ 73
Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
               KD   TL      L   L    KP +A +NG  +G G  +++     VA     F 
Sbjct: 74  ----KDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFG 129
Query: 165 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 212
            PE  +G  P AG +  L    G  L   + L+G  +   +    GL +
Sbjct: 130 LPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVS 178

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+  D  + +  E   ++    LNRP ALNAL+ +M  +L   +   END  +  + + G
Sbjct: 4   SMPVDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63
Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF------IYLLGTHLKPHVAILNGV 140
           +GRAFC+G D+  +      GK+   + +  T   +           T  KP +  +NG+
Sbjct: 64  TGRAFCSGADVKEI---PEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGI 120
Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
             G G          +A  +  F  P   IG 
Sbjct: 121 CCGAGMDWVTTTDIVIASEQATFFDPHVSIGL 152

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 1/175 (0%)
Query: 41  KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSL 100
           K +  +  LN P   N L+      L +     E DP +  V + G G+AF AG D+  L
Sbjct: 6   KGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFL 65
Query: 101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
                 G  E  +    +L    + + T+ KP VA +NG  + GGAG+++     V   +
Sbjct: 66  ERVTELGAEENYRHSL-SLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEE 124
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
                 E  IGF     +   +  +     + L LTG  +   E  A GL    +
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+NT    ++ +  KA   D +I  V + G+G  + +G D+ +       G 
Sbjct: 41  FNRPKKKNAINTEXYHEIXRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGGV 99
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV--ACGKTVFATP 166
            E+ K+    L  F+       KP +A++NG  +  G  V++ G F    A  +  F TP
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAV--GISVTLLGLFDAVYASDRATFHTP 157
Query: 167 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            + +G  P+  +S+    +  P    E L + G KL   E  A GL T 
Sbjct: 158 FSHLGQSPEGCSSYTFPKIXSPAKATEXL-IFGKKLTAGEACAQGLVTE 205

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 98/252 (38%), Gaps = 30/252 (11%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++
Sbjct: 14  AQTQGPGSMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDV 70
Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
             V + G+   FCAG D   L        L +    +  L           KP +  +NG
Sbjct: 71  DVVIITGADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAING 117
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGA 198
             + GG  +++     +A     FA     +G  P  G S  L    G  L   ++LTG 
Sbjct: 118 AAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGD 177
Query: 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI 257
            L+ A+ +  GL T     ++L      +   +V ++ + + A L  Y            
Sbjct: 178 YLSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNNQNAVRALLTSY------------ 225
Query: 258 HRIDIVDKCFGL 269
           HRID      GL
Sbjct: 226 HRIDDAQTSAGL 237

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 30/245 (12%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++  V + G
Sbjct: 4   SMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG 60
Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGA 146
           +   FCAG D   L        L +    +  L           KP +  +NG  + GG 
Sbjct: 61  ADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAINGAAVTGGL 107
Query: 147 GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEM 205
            +++     +A     FA     +G  P  G S  L    G  L   ++LTG  L+ A+ 
Sbjct: 108 ELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADA 167
Query: 206 MACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD 264
           +  GL T     ++L    + +   +V ++ + + A L  Y            HRID   
Sbjct: 168 LRAGLVTEVVPHDQLLGAAQAVAASIVGNNQNAVRALLASY------------HRIDDAQ 215
Query: 265 KCFGL 269
              GL
Sbjct: 216 TSAGL 220

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 13/210 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNR    N+L+  +  +L  +      + N   V + G+G +AFCAG D+       N+ 
Sbjct: 24  LNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE-RAGXNEE 82
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           ++       RT    +  L    +P +A +NG+ +GGG  +S+   FR+A         E
Sbjct: 83  QVRHAVSXIRTTXEXVEQLP---QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTE 139
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATH----YSVSEKLPL 222
           T +   P AG +  L  L G    + L  TG +++  E    GL       + + EK   
Sbjct: 140 TTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIE 199
Query: 223 IEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           I E   K+ ++ P  +    E  S+ +  D
Sbjct: 200 IAE---KIASNGPIAVRLAKEAISNGIQVD 226

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ PS  N+    +G +L   ++  ++DP +  + + G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81
Query: 109 LEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                DF  + +    + L T   P +A +NG  +G G  +++    R+   +  +A P+
Sbjct: 82  ---NPDFSASPVQPAAFELRT---PVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQ 135
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 211
              G  PDA A + L  L G  +   L LTGA  +    +  GLA
Sbjct: 136 VRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLA 180

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 15/177 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+  NA+N     ++ + F     D +   V + G+G+ F AG D++ +   + Q K
Sbjct: 46  LNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPK 105
Query: 109 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 106 GDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDA 165
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 213
            F   E  +G   D G    L  LP  +G       LA T  K+   E +  GL + 
Sbjct: 166 FFQVKEVDVGLAADVGT---LQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR 219

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 9/182 (4%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN 105
           +  LNRP  +NA+  ++     ++     +D ++  V + G+G+ FC+G D  S     +
Sbjct: 36  LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPH 95
Query: 106 QGKLEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
            G L +     R+   L   I  L    +P +A +NG  +GGG  +++    RVA     
Sbjct: 96  IGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAY 155
Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSVSE 218
           F       G         YL  LP  +G   A    LTG  ++  E    GL +    SE
Sbjct: 156 FRAAGINNGLTASELGLSYL--LPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASE 213
Query: 219 KL 220
            L
Sbjct: 214 SL 215

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+ N  M A+L +  K  E D  I  + + G+GR FCAG D+    +  N   
Sbjct: 30  LNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDL----NDRNVDP 85
Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
                D   ++  F   L   L    KP +  +NGV  G GA +++ G   +A     F 
Sbjct: 86  TGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFV 145
Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHYSVSEKLPLI 223
              + +G  PD G ++ L  + G      LAL G +L+  +    G+       E L   
Sbjct: 146 MAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADT 205
Query: 224 EEELGKLVTDDPS 236
            ++L + +   P+
Sbjct: 206 AQQLARHLATQPT 218

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 11/169 (6%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN 105
           +A LN   A NA ++ +   + +L    E D NI  V + G GR F AG DI        
Sbjct: 18  VATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTE 76
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
             +  E     +  +  +       KP +A ++G  +GGG   +     R A        
Sbjct: 77  AKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGL 133
Query: 166 PETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL
Sbjct: 134 PELTLGLIPGFAGT---QRLPRYVGKAKACEXXLTSTPITGAEALKWGL 179

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 27/228 (11%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LV+     R   LNRP + NAL+  + +   +     +ND ++  V + G+   FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+  L      G   E  D                KP +  +NG  + GG  +++     
Sbjct: 71  DLKEL------GDTTELPDISPKWPDMT-------KPVIGAINGAAVTGGLELALYCDIL 117
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHY 214
           +A     FA     +G  P  G S  L    G  L   ++LTG  L+  + +  GL T  
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEV 177
Query: 215 SVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 261
              + L      +   +V ++   + A L+ Y            HRID
Sbjct: 178 VAHDDLLTAARRVAASIVGNNQKAVRALLDSY------------HRID 213

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 76/189 (40%), Gaps = 12/189 (6%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+  DL   V VE        I+NRP A NA+N    A L   F  ++ D +     + G
Sbjct: 4   SMVSDL---VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCG 60
Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGG 145
           +G  FCAG D+ +           E     RT    +      L KP +A ++G  + GG
Sbjct: 61  NGGTFCAGADLKAF-------GTAEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGG 113
Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAE 204
             +++    RVA    VF       G     G +  L  L GH     + LTG  +   E
Sbjct: 114 LELALWCDLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADE 173
Query: 205 MMACGLATH 213
            +A GLA  
Sbjct: 174 ALAIGLANR 182

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA-FCAGGDIVSLYHFMNQG 107
           L+ P   N L+  +G  L +  +A  N+ +I  + ++   RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
             +G  PD GAS++L  + G+     L L G      E +  GL
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGL 182

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQG 107
           +NRP   NA      A++   F    +D N+  + + G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144
Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             +G       S YL+ + GH
Sbjct: 145 PKVGSFDAGYGSGYLARIVGH 165

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 109 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 213
            F   E  +G   D G    L  LP  +G       L  T  K+   E +  GL + 
Sbjct: 139 FFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR 192

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NAL+  M A L + F     D ++  V +  SG+AFCAG       H + + +
Sbjct: 41  LNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAG-------HDLKEMR 93
Query: 109 LEECKDFFRTLYS----FIYLLGTHLKPHVAILNGVTMGGG 145
            E  ++++  L++     +  +     P +A ++G+    G
Sbjct: 94  AEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAG 134

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NRP   NA       ++   F    +D NIG + + G+G +AFC+GGD     H    G
Sbjct: 27  INRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVG 86
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + E  +     L   I ++    KP +A++ G  +GGG  + +     +A    +F    
Sbjct: 87  EDEIPRLNVLDLQRLIRVI---PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTG 143
Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             +G       + YL+ + GH
Sbjct: 144 PKVGSFDGGYGAGYLARIVGH 164

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P   NAL+T + ++L++  +   +DP +  V +  +G  FCAG D   L    + G 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGAD---LSEAGSGGS 82
Query: 109 LEECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
                D      R + + +  +     P +A ++G    GG G+       VA  ++ FA
Sbjct: 83  PSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFA 142
Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE 224
             E  IG  P   +   L  L         LTG K +       GL T    +E L   +
Sbjct: 143 LTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLITM--AAEDL---D 197
Query: 225 EELGKLVTD 233
             + +LVTD
Sbjct: 198 AAIDQLVTD 206

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR         I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM---N 105
           +NRP A NAL   +   + K     + + ++  V ++G+   F AG D+     F+   N
Sbjct: 20  INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN 79
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
            G   +   F   L S   L     KP +  + GV +G G  + +      A    +F  
Sbjct: 80  AGPAGQVPPFV-LLKSAARL----SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQI 134
Query: 166 PETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 210
           P   +G  P+ GAS  L    G H    L  T  K N    +  GL
Sbjct: 135 PFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 16/234 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP   NALN+ +  +L +  +    D +   + + G G AFCAG D+ S   F     
Sbjct: 36  LQRPERRNALNSQLVEELTQAIRK-AGDGSARAIVLTGQGTAFCAGADL-SGDAF----- 88
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                D+   L      +     P V  +NG  +G G  +++    RV      F  P +
Sbjct: 89  ---AADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTS 145
Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
             G   D  +   LS L GH     + L+  KL     +  G+A              E+
Sbjct: 146 KYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEI 205
Query: 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG-LDTVEEIIDSLE 280
            +L    P  I+      +D    ++    H+ ++ DK +G  D +E  +  +E
Sbjct: 206 ARLA---PLAIQHAKRVLNDDGAIEEAWPAHK-ELFDKAWGSQDVIEAQVARME 255

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 32  LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91
           + ++VL+E +    +  +NRP A NA+N  +   L       ++  ++    + G+G  F
Sbjct: 5   MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 92  CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           CAG D+ +      +  L E    F  +           KP +A + G  + GG  + + 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV--------PPRKPIIAAVEGFALAGGTELVLS 114
Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTG 197
               VA     F  PE   G    AG    L + +P  +   LALTG
Sbjct: 115 CDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTG 161

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NALN  + A L        +   I  V + G G  F AG D+  L        
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLTDIPD--QIRAVVIHGIGDHFSAGLDLSELRERDATEG 88
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           L   + + R      Y       P +A L G  +GGG  ++     RVA     +A PE 
Sbjct: 89  LVHSQTWHRVFDKIQYCR----VPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144
Query: 169 LIGFHPDAGASFYLSHLPG--HLGEFLALTGAKLNGAEMMACGLATH 213
             G     G S  L  L G   + + + LTG   + AE +  G + +
Sbjct: 145 SRGIFVGGGGSVRLPRLIGVARMADMM-LTGRVYSAAEGVVHGFSQY 190

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 11/202 (5%)
Query: 40  GKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           G A+S   I LNRP A NA N  +  +L+  +     D  +  + ++ +G+ F AG D+ 
Sbjct: 28  GVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLR 87
Query: 99  SLYHFMNQGKLE-ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
                  +  LE   +   R    +        KP +A + G  + GG  +  P    +A
Sbjct: 88  GGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILA 147
Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH 213
               +F+ P  L+G     G   Y  H     P    E L  TG  L   E    G+   
Sbjct: 148 SDDALFSDPVALMGI----GGVEYHGHTWELGPRKAKEIL-FTGRALTAEEAERTGMVNR 202
Query: 214 YSVSEKLPLIEEELGKLVTDDP 235
               ++L     EL + +   P
Sbjct: 203 VVARDELDAQTRELAEQIATMP 224

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NA N  +  +L+  +     D ++  + ++ +G+ F AG D+       ++  
Sbjct: 35  LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLT 94
Query: 109 LE-----ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           LE     E + +    YS  +      KP +A + G  + GG  +  P    +A    +F
Sbjct: 95  LEFIYAHESRRYLE--YSLRWR--NVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150
Query: 164 ATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
           + P  L+    D G   Y  H     P    E L  TG  +   E+   G+       ++
Sbjct: 151 SDPVVLM----DIGGVEYHGHTWELGPRKAKEIL-FTGRAMTAEEVAQTGMVNRVVPRDR 205
Query: 220 L 220
           L
Sbjct: 206 L 206

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 45  RMAILNRPSALNALNTNMGAKLNK--LFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH 102
           R  +L+ P   N L+  M   L    L  A  ND  +  +S +G    F +G D+  L  
Sbjct: 44  RNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP--VFSSGHDLKELTE 101
Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
              QG+ +   + F+T    +  +  H  P +A++NG+    G  +       VA  K+ 
Sbjct: 102 --EQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSS 158
Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
           FATP   +G             +P  +   +  TG  ++  E +  GL
Sbjct: 159 FATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGL 206

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 16/189 (8%)
Query: 26  SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK 85
           S +  D   +VLVE +    +  +NRP A N++N  +   L       + D  +    + 
Sbjct: 7   SELNGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILT 66
Query: 86  GSGRAFCAGGDIVSLYHFMN---QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
           G+G +FCAG D+ +     N   +G+               +      KP +A + G  +
Sbjct: 67  GAGGSFCAGMDLKAFARGENVVVEGR------------GLGFTERPPAKPLIAAVEGYAL 114
Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLN 201
            GG  +++     VA   + F  PE   G     G    L   +P  +   LALTG  L+
Sbjct: 115 AGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLS 174
Query: 202 GAEMMACGL 210
                A G+
Sbjct: 175 AERAHALGM 183

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL     A L  L         +  + + G GR FC+GGD+  +        
Sbjct: 32  LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSXD 91
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                DF R     +  +     P +A L+GV  G GA +++   FRVA   T FA   T
Sbjct: 92  TARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151
Query: 169 LIGFH-PDAGASFYLSHLP--GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225
            +G    D GA++ L  +   GH    L L G  +   E    GL +  +   +      
Sbjct: 152 RVGLSGGDXGAAYLLPRVVGLGHATRLLXL-GDTVRAPEAERIGLISELTEEGRADEAAR 210
Query: 226 ELGKLVTDDPSVIEA 240
            L + + D P++  A
Sbjct: 211 TLARRLADGPALAHA 225

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 1/165 (0%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR S  NA +  +  ++     +  ND N+  + +K +G+ F AG D+  +    N  +
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E  +D    L + +Y +    KP +A++ G   GGGAG++      +A     F   E 
Sbjct: 79  EENLEDSL-VLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
            +G  P   + + +  +     + L ++    +     +  L  H
Sbjct: 138 KLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQH 182

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 55  LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114
           +    TN+G +LN    A    P++   S       F  GGD+      + +G      D
Sbjct: 68  ITGYQTNLGQRLNT---AGVLAPHVVLAS---DSDVFNLGGDLALFCQLIREGDRARLLD 121
Query: 115 F----FRTLYSFIYLLGTHLKPH-VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 169
           +     R +++F   LG   + H +A++ G  +GGG   ++     +A    +   PE L
Sbjct: 122 YAQRCVRGVHAFHVGLGA--RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVL 179
Query: 170 IGFHPDAGA-SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
               P  GA SF    +  HL + + L G   +  +++  GL
Sbjct: 180 FDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGL 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-144
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-138
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-32
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-30
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-30
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-30
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-30
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-29
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-29
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-29
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-28
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-28
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-28
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	2e-28
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-28
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-28
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	5e-28
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	6e-27
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-26
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	5e-26
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	2e-25
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	3e-25
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-25
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	5e-25
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	8e-25
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-24
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-24
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-24
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	2e-24
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	5e-24
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	6e-24
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	6e-24
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-23
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-23
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	2e-23
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-23
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	3e-23
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	5e-23
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	5e-23
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	6e-23
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	8e-23
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	9e-23
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	3e-22
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-22
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-22
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-22
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	5e-22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	7e-22
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	9e-22
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	1e-21
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	4e-21
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	4e-21
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	4e-21
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	7e-21
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	8e-21
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	3e-20
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	3e-20
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	5e-20
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	1e-19
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	3e-19
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	4e-19
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	2e-18
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	2e-18
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-18
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-18
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	6e-18
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-17
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-17
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	3e-17
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-14
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	3e-14
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-12
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  413 bits (1063), Expect = e-144
 Identities = 131/334 (39%), Positives = 193/334 (57%), Gaps = 12/334 (3%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-R 89
           D   +VL+  K  + +  LNRP  LNAL  NM  ++    K WE DP    + +KG+G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 90  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149
           AFCAGGDI  +       + +    FFR  Y     +G+  KP+VA+++G+TMGGG G+S
Sbjct: 63  AFCAGGDIRVISEAEKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLS 121

Query: 150 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 209
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181

Query: 210 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNS---VIHRIDIVDKC 266
           +ATH+  SEKL ++EE+L  L +     I + LE Y      D++    +   +D ++ C
Sbjct: 182 IATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC 241

Query: 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 326
           F  +TVEEII++L+ +       +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDG----SSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLT 297

Query: 327 REYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
            EYR+S   +      DF+EGVRA ++D+D +PK
Sbjct: 298 MEYRLSQACMRG---HDFHEGVRAVLIDKDQSPK 328

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  399 bits (1028), Expect = e-138
 Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 18/357 (5%)

Query: 16  LRALSQHRTSSSVTDDLCNQVLVEGKANS-RMAILNRPSALNALNTNMGAKLNKLFKAWE 74
           +  L      S  T ++  Q L         +  LN   ALNAL+ +M   +      W+
Sbjct: 23  MTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWK 82

Query: 75  NDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK---LEECKDFFRTLYSFIYLLGTHL 130
            DP I  V + GSG +AFCAGGD+ +LYH     K    E  K FF   Y   YLL T+ 
Sbjct: 83  KDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG 142

Query: 131 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 190
           KP +   +G+ MGGG G+    + +V    +  A PE  IG +PD G S++L+ +PG +G
Sbjct: 143 KPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG 202

Query: 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-----SVIEACLEKY 245
            FL LT   +N A+    GLA HY   +   L+ + +  L   D        ++  + + 
Sbjct: 203 LFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINEL 262

Query: 246 SDLVYPDKNS--VIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
           S+ V   K    +    +++D+     ++ +I+  + + ++  ++ W       +   SP
Sbjct: 263 SNQVDIPKGDSVLAESQEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSP 319

Query: 304 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIAPK 360
           +S  ++    + G   +  +C   E  +S+   ++   GDF EGVRA ++D+D  PK
Sbjct: 320 ISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK---GDFCEGVRALLIDKDKQPK 373

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  122 bits (307), Expect = 2e-32
 Identities = 42/312 (13%), Positives = 75/312 (24%), Gaps = 75/312 (24%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P  LNAL       L +L +  + + ++ F  ++ SGR F +G D   +        
Sbjct: 24  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 83

Query: 109 LEECKD-------FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            +   +       F             H K  +  LNG  +G  A +        +    
Sbjct: 84  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143

Query: 162 V-FATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE 218
           V    P   +G   + G +  L    G     E   +         M   G  +      
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYE-CLMFNKPFKYDIMCENGFISK----- 197

Query: 219 KLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 278
                                          +                           S
Sbjct: 198 ------------------------------NFNM------------------------PS 203

Query: 279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR 338
             +EA   N          +K     S     + ++      F++    E       +  
Sbjct: 204 SNAEA--FNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNE---SLKY 258

Query: 339 LISGDFYEGVRA 350
            + G+  +  R 
Sbjct: 259 WVDGEPLKRFRQ 270

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  116 bits (294), Expect = 1e-30
 Identities = 58/304 (19%), Positives = 100/304 (32%), Gaps = 74/304 (24%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+NT M  ++ +  KA   D +I  V + G+G  + +G D+ +       G 
Sbjct: 41  FNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGGV 99

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP +
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS 159

Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
            +G  P+  +S+    +       E + + G KL   E  A GL T              
Sbjct: 160 HLGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEACAQGLVTE------------- 205

Query: 227 LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLI 286
                                 V+PD                         + + E    
Sbjct: 206 ----------------------VFPD------------------------STFQKEVW-- 217

Query: 287 NDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
                 + L+   +  P +L++S   IR+   +        E    +    R +S +   
Sbjct: 218 ------TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECN--VLQ-GRWLSDECTN 268

Query: 347 GVRA 350
            V  
Sbjct: 269 AVVN 272

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  115 bits (291), Expect = 3e-30
 Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LNA    M A++ K  K    DPN+  V + G+GRAFCAG D+  +   M+ G 
Sbjct: 18  LNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGD 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           +      +  +   ++ L    KP VA +NG   G G  +++   FR+   K  FA    
Sbjct: 78  VLR--SRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI 132

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  PDAG  +YL  L G    L   LA+ G K+   E  A GLAT 
Sbjct: 133 HVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAALGLATK 178

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  115 bits (291), Expect = 3e-30
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +  P   NAL+     ++       E D ++G V + G+  AFCAG  +           
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLRE---IPLDKG 74

Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
           +   +D FR    + + +   +    +P +A +NGV  GGG G+S+     +      F 
Sbjct: 75  VAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFV 134

Query: 165 TPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
                IG   D   S+ L+ + G    +   L LT   L   E    GL +
Sbjct: 135 CAWHTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKDWGLVS 183

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  113 bits (286), Expect = 1e-29
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP  LNA++T M  +L+   +  E D ++  V + G+GRAFC+GGD+         G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTG---GDTAGA 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSL-------PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  PD GAS  L  L G        +A+T  K++ A     G+ +H
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSR--MAMTAEKISAATAFEWGMISH 176

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  113 bits (285), Expect = 2e-29
 Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNA N  +     +      +DP +  V + GSGR F AG D+        +  
Sbjct: 21  LNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAE---MQARIT 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                +        I  L    KP +  +NG+ +G GA +                 P T
Sbjct: 78  DPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  P+A +S+ L  L G        L ++   ++  E +  GL   
Sbjct: 138 SLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLVWR 183

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  113 bits (285), Expect = 2e-29
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA-FCAGGDIVSLYHFMNQG 107
           L+ P   N L+  +G  L +  +A  N+ +I  + ++   RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138

Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
             +G  PD GAS++L  + G+   +   L L G      E +  GL   
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMN--LLLEGKLFTSEEALRLGLIQE 185

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  111 bits (280), Expect = 1e-28
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NRP A NAL   +   + K     + + ++  V ++G+   F AG D+     FM   +
Sbjct: 20  INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKD---FMGFVQ 76

Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                   +      +       KP +  + GV +G G  + +      A    +F  P 
Sbjct: 77  NPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF 136

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH 213
             +G  P+ GAS  L    G+     L  T  K N    +  GL   
Sbjct: 137 VSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNE 183

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  110 bits (278), Expect = 1e-28
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +   S+ N  + ++   L   F     +     V + G G  F +G        F+ +  
Sbjct: 18  MKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASK----EFLIRKT 73

Query: 109 LEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
             E +  D    +            P +A + G + GGG  + +   F V   ++V+AT 
Sbjct: 74  RGEVEVLDLSGLILDC-------EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATN 126

Query: 167 ETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATH 213
               GF P    S  L      LG      +  TG    G E+   G+   
Sbjct: 127 FMKYGFTPVGATSLILREK---LGSELAQEMIYTGENYRGKELAERGIPFP 174

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  111 bits (280), Expect = 2e-28
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++V+ K +    I    R +  NALNT +  ++     +   D     V    +G  FC 
Sbjct: 25  IVVK-KEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCC 82

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           G D       +   +     +   T+ +F+       KP V  +NG  +G GA +     
Sbjct: 83  GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 142

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLA 211
              A  K  F TP T  G  PD  +S     + G     E + + G KL   E  A GL 
Sbjct: 143 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANE-MLIAGRKLTAREACAKGLV 201

Query: 212 TH 213
           + 
Sbjct: 202 SQ 203

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  111 bits (279), Expect = 2e-28
 Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 6/169 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL     A L  L         +  + + G GR FC+GGD+  +        
Sbjct: 32  LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMD 91

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                DF R     +  +     P +A L+GV  G GA +++   FRVA   T FA   T
Sbjct: 92  TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151

Query: 169 LIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G    D GA++ L  + G        L + G  +   E    GL + 
Sbjct: 152 RVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGLISE 198

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  110 bits (277), Expect = 2e-28
 Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 9/183 (4%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++V  K +    I    + S  N+LN  +  ++         D     V +   G  FC 
Sbjct: 7   IVVR-KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCC 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           G D +     +   +  E       + +F+       KP +  +NG  +G GA +     
Sbjct: 65  GLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
              A  K  F TP T  G  PD  ++     + G        + L+G KL   E    GL
Sbjct: 125 VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANE--MLLSGRKLTAQEACGKGL 182

Query: 211 ATH 213
            + 
Sbjct: 183 VSQ 185

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  110 bits (278), Expect = 3e-28
 Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 11/205 (5%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73

Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILN 138
               + G+GRAF AGGD     +        + +         I L       P VA +N
Sbjct: 74  RAAVITGAGRAFSAGGDFG---YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVN 130

Query: 139 GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLAL 195
           G  +G G  +               A P   +G     G                   AL
Sbjct: 131 GPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE--YAL 188

Query: 196 TGAKLNGAEMMACGLATHYSVSEKL 220
           TG +++    +  GLA H  V++  
Sbjct: 189 TGTRISAQRAVELGLANH--VADDP 211

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  110 bits (277), Expect = 5e-28
 Identities = 48/186 (25%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 36  VLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG 94
           VL E        I  NR   LNA   ++ A         E DP I  + + G GR FCAG
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90

Query: 95  GDIVSLYHFMNQGKL---EECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSI 150
             + S        K     +  +    +        T L KP +A +NG  +G G   ++
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQAL 150

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMA 207
               R A     FA      G   + G S+ L  L      L   L L+G      E   
Sbjct: 151 MCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEAAQ 208

Query: 208 CGLATH 213
            GL   
Sbjct: 209 LGLVKE 214

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  106 bits (268), Expect = 6e-27
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P  LN++   M   L  ++   + DP++  V ++G G+AF +GG    +      G 
Sbjct: 29  LDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDE--TIGD 85

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E      R     +  L    KP V+ + G  +G G  V++     VA          T
Sbjct: 86  YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHT 145

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G      A+     L G          LT   L+G E    GL + 
Sbjct: 146 KLGVAAGDHAAICWPLLVGMAKAKY--YLLTCETLSGEEAERIGLVST 191

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  105 bits (265), Expect = 1e-26
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ PS  N+    +G +L   ++  ++DP +  + + G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       +    + L     P +A +NG  +G G  +++    R+   +  +A P+ 
Sbjct: 82  NPD--FSASPVQPAAFELR---TPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQV 136

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
             G  PDA A + L  L G        L LTGA  +    +  GLA  
Sbjct: 137 RFGVAPDALAHWTLPRLVGTAVAAE--LLLTGASFSAQRAVETGLANR 182

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  104 bits (261), Expect = 5e-26
 Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 7/181 (3%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +         + I  R   LNA+   +   L ++++  E    +  V ++G G  F AGG
Sbjct: 12  LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGG 71

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
               +     +   E     F      +       +P VA +  V +G G  +++     
Sbjct: 72  SFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
           V    T        +G      A      L G          L    L G E    GL  
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY--HLLLNEPLTGEEAERLGLVA 187

Query: 213 H 213
            
Sbjct: 188 L 188

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  102 bits (257), Expect = 2e-25
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 12/197 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            +RP A N +N  +  +  ++    E    +  V ++G    FC G D   +Y  M +G 
Sbjct: 22  FHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRG- 79

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       LY     L T     ++ + G    GG G        +A     F+  E 
Sbjct: 80  -RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSEL 138

Query: 169 LIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATHYSVSEKLPLIE 224
           L G +P     F    L   +G      + L    ++  E    GL      +E   L+ 
Sbjct: 139 LFGLYPACVLPF----LIRRIGRQKAHYMTLMTKPISVQEASEWGLI-DAFDAESDVLLR 193

Query: 225 EELGKLVTDDPSVIEAC 241
           + L +L   +   I   
Sbjct: 194 KHLLRLRRLNKKGIAHY 210

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  102 bits (257), Expect = 3e-25
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSL--YHFMNQ 106
           LNRP  +NA+  ++     ++     +D ++  V + G+G+ FC+G D  S      +  
Sbjct: 39  LNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGG 98

Query: 107 GKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
                       L   + L    + +P +A +NG  +GGG  +++    RVA     F  
Sbjct: 99  LTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRA 158

Query: 166 PETLIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
                G    + G S+ L    G        + LTG  ++  E    GL
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASD--IMLTGRDVDADEAERIGL 205

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  101 bits (255), Expect = 3e-25
 Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           V  E     R+  L+ P+  N  +  +   +         D ++  V + G   R+F AG
Sbjct: 2   VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           GD   +        +EE  D    LY  +  +    KP +A ++G  +G G   ++    
Sbjct: 62  GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVN---KPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           R+      F  PE   G     GA+     L    G             L+    +   L
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAAI----LGFTHGFSTMQEIIYQCQSLDAPRCVDYRL 174

Query: 211 ATH 213
              
Sbjct: 175 VNQ 177

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  101 bits (253), Expect = 5e-25
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LV+     R   LNRP + NAL+  + +   +     +ND ++  V + G+   FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+       +  +L +    +  +           KP +  +NG  + GG  +++     
Sbjct: 71  DLKE---LGDTTELPDISPKWPDMT----------KPVIGAINGAAVTGGLELALYCDIL 117

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           +A     FA     +G  P  G S  L      +G  LA    LTG  L+  + +  GL 
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQK---VGVGLARRMSLTGDYLSAQDALRAGLV 174

Query: 212 TH 213
           T 
Sbjct: 175 TE 176

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  100 bits (252), Expect = 8e-25
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++         +    +L   F     D     V + G+G +FC   D  S     N G 
Sbjct: 31  VHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTS----FNLGT 86

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
             +  +        +  L +   P +A +NG  +     + +     +A     F   P 
Sbjct: 87  PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP-VTNAPEIPVMSDIVLAAESATFQDGPH 145

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
              G  P  GA     H+ G   G +  LTG +L+    +  G    
Sbjct: 146 FPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE 192

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  100 bits (251), Expect = 2e-24
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+  NA +  M  +L      +E D ++    + G G  F AG D+ S+   +  G 
Sbjct: 24  LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
               +            L    KP +  ++G  +  G  +++     +A     FA  E 
Sbjct: 84  SLTPEGGINPWQVDGRQLS---KPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEV 140

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             G +P  GA+      P   G   A    LT    +  E    G+   
Sbjct: 141 NRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQE 186

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  100 bits (251), Expect = 2e-24
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 9/194 (4%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH       +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL--- 187

Query: 214 YSVSEKLPLIEEEL 227
             V+E +PL   +L
Sbjct: 188 --VNESVPL--AQL 197

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 6/167 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++   +          +    F     D +   V + GSG A+ A  D        +   
Sbjct: 39  MHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFP---SLGDVTN 95

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
             E    +      +  L     P ++ +NG  +       +     +A   TVF   P 
Sbjct: 96  PREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSE-YILTTDIILASENTVFQDMPH 154

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
              G  P  G         G   G +   T  KL   +     +   
Sbjct: 155 LNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE 201

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
               T  + T    + + +          L RP   NALN+ +  +L +  +    D + 
Sbjct: 7   HHMGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSA 65

Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
             + + G G AFCAG D+             +  D    L+  +        P V  +NG
Sbjct: 66  RAIVLTGQGTAFCAGADLSG----DAFA--ADYPDRLIELHKAMDASP---MPVVGAING 116

Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALT 196
             +G G  +++    RV      F  P +  G   D  +   LS L GH       + L+
Sbjct: 117 PAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA--MLLS 174

Query: 197 GAKLNGAEMMACGLATH 213
             KL     +  G+A  
Sbjct: 175 AEKLTAEIALHTGMANR 191

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++    +N L   M   LN+   A + D N+G + + G+ R F  G D+      +  G+
Sbjct: 20  MDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDL----KVLTSGE 73

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +   D  R  +   Y L ++ KP V    G  +  GA +   G  RVA         E 
Sbjct: 74  AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV 133

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            IG      A   L     P    +  A       G   +A G    
Sbjct: 134 AIGMTIPYAAMEVLKLRLTPSAYQQ-AAGLAKTFFGETALAAGFIDE 179

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 98.4 bits (246), Expect = 6e-24
 Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P   N L+  M   L +     E DP +  V + G G+AF AG D+  L   + +  
Sbjct: 14  LNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER-VTELG 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E 
Sbjct: 73  AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV 132

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
            IGF   A  S  L      +GE  A    LTG  +   E  A GL   
Sbjct: 133 KIGFVA-ALVSVILVRA---VGEKAAKDLLLTGRLVEAREAKALGLVNR 177

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 98.4 bits (246), Expect = 6e-24
 Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V  E + +  +  L+R    NA ++ M A L      +E         +   G  F AG 
Sbjct: 14  VTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGL 73

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D++     +          +         ++     KP V  + G     G  + +    
Sbjct: 74  DLME----LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADI 129

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA   T FA  E L G  P  G++      P   G   A    LTG + +  E +   L
Sbjct: 130 AVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 211 ATH 213
            T 
Sbjct: 187 LTE 189

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +    +    +  L RP  LNAL+  M A++    +A++ +  +  + + G GRAF AG 
Sbjct: 7   IAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           DI      M +      +       +  + ++     P +A +NG+ +GGG  +++    
Sbjct: 67  DIQE----MAKDDPIRLEWLNQFADWDRLSIVK---TPMIAAVNGLALGGGFELALSCDL 119

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     F  PE  +G  P AG +  L+ L   +G   A     TGA+++  E    G+
Sbjct: 120 IVASSAAEFGFPEVNLGVMPGAGGTQRLTKL---IGPKRALEWLWTGARMSAKEAEQLGI 176

Query: 211 ATH 213
              
Sbjct: 177 VNR 179

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 97.0 bits (242), Expect = 2e-23
 Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--VSLYHFMNQ 106
           L R  A + L+  M A L+   +    D ++  + + G GR FCAG D+  +  +     
Sbjct: 22  LGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPD 80

Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
                  D F    + +  L    KP +A++ G+    G  +        A     F  P
Sbjct: 81  EGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLP 140

Query: 167 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
               G      A   +S +     + E +ALTGA  +    +A GL
Sbjct: 141 GVQNGGFCTTPAV-AVSRVIGRRAVTE-MALTGATYDADWALAAGL 184

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 97.2 bits (243), Expect = 2e-23
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 5/167 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR S  NA +  +  ++     +  ND N+  + +K +G+ F AG D+  +    N  +
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE  +    L + +Y +    KP +A++ G   GGGAG++      +A     F   E 
Sbjct: 79  -EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            +G  P A  S Y+            L ++    +     +  L  H
Sbjct: 138 KLGLIP-AVISPYVVRAIGERAAKM-LFMSAEVFDATRAYSLNLVQH 182

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 96.8 bits (242), Expect = 3e-23
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 15/185 (8%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           + V+      +    LNR    N+L+  +  +L  +      + N   V + G+G +AFC
Sbjct: 10  ISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFC 68

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AG D+            E+ +     + + + ++    +P +A +NG+ +GGG  +S+  
Sbjct: 69  AGADLKE----RAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124

Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
            FR+A         ET +   P AG +  L  L   +G   A     TG +++  E    
Sbjct: 125 DFRIAAESASLGLTETTLAIIPGAGGTQRLPRL---IGVGRAKELIYTGRRISAQEAKEY 181

Query: 209 GLATH 213
           GL   
Sbjct: 182 GLVEF 186

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++       L   I              KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLG---EFLALTGAKLNGAEMMACGLATHYSVSE 218
            F   E  +G   D G    L  + G+     E L  T  K+   E +  GL     VS 
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNE-LTFTARKMMADEALDSGL-----VSR 192

Query: 219 KLPLIEE 225
             P  + 
Sbjct: 193 VFPDKDV 199

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 96.1 bits (240), Expect = 5e-23
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 16/203 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--------VSL 100
           LN P   NAL+T + ++L++  +   +DP +  V +  +G  FCAG D+         S 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS 85

Query: 101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
            + M   +  E     R +            P +A ++G    GG G+       VA  +
Sbjct: 86  AYDMAVERAREMAALMRAIVES-------RLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
           + FA  E  IG  P   +   L  L         LTG K +       GL    +  +  
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI-TMAAEDLD 197

Query: 221 PLIEEELGKLVTDDPSVIEACLE 243
             I++ +  +    P  + A   
Sbjct: 198 AAIDQLVTDVGRGSPQGLAASKA 220

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 14/203 (6%)

Query: 18  ALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP 77
           +++ + + +    +     LVE + ++ +  +NRPS  NAL+  M   + + +   +NDP
Sbjct: 4   SMAPNTSETPANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDP 63

Query: 78  NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHL-KPHV 134
           +I    + G+G  FCAG D+ +      +    +      +        L G  L KP +
Sbjct: 64  DIRCCILTGAGGYFCAGMDLKA----ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLI 119

Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
           A + G  + GG  +      RVA     F   E     +P  G++     L   +   +A
Sbjct: 120 AAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVA 176

Query: 195 ----LTGAKLNGAEMMACGLATH 213
               LTG  +  AE    GL  H
Sbjct: 177 CDLLLTGRHITAAEAKEMGLVGH 199

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 96.1 bits (240), Expect = 6e-23
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI       +    +     F   +  +  +     P +A + G  +GGG  +++     
Sbjct: 87  DIKE---MADLTFADAFTADFFATWGKLAAVR---TPTIAAVAGYALGGGCELAMMCDVL 140

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           +A     F  PE  +G  P  G S  L+     +G+  A    LTG  ++ AE    GL 
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRA---IGKAKAMDLILTGRTMDAAEAERSGLV 197

Query: 212 TH 213
           + 
Sbjct: 198 SR 199

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 95.4 bits (238), Expect = 8e-23
 Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 17/193 (8%)

Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+++++   V VE        ILNRP A NA++    A L   F  ++ DP      + G
Sbjct: 4   SMSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG 63

Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
               FCAG D+      M   +  E           S + L     KP +A ++G  + G
Sbjct: 64  DNGTFCAGADL----KAMGTDRGNELHPHGPGPMGPSRLRL----SKPVIAAISGHAVAG 115

Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
           G  +++    RV     V        G     G +     LP  +G   A    LTG  +
Sbjct: 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPV 172

Query: 201 NGAEMMACGLATH 213
           +  E +  GL   
Sbjct: 173 HANEALDIGLVNR 185

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 95.8 bits (239), Expect = 9e-23
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRP A NAL+  M A L + F     D ++  V +  SG+AFCAG D+  +     + 
Sbjct: 40  TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEM---RAEP 96

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E  +  F      +  +     P +A ++G+    G  +       VA     FA   
Sbjct: 97  SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSG 156

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
             +G          LS         E + +TG  ++  +    GL
Sbjct: 157 INVGLFCSTPGV-ALSRNVGRKAAFE-MLVTGEFVSADDAKGLGL 199

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 18/183 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VLVE +    +  +NRP A N++N  +   L       + D  +    + G+G +FCAG 
Sbjct: 17  VLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGM 76

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+ +      +G      +        +        KP +A + G  + GG  +++    
Sbjct: 77  DLKA----FARG------ENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA   + F  PE   G     G       LP  +   +A    LTG  L+     A G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHALGM 183

Query: 211 ATH 213
              
Sbjct: 184 VNV 186

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NR    N+L+ N+   L+K   A ++D  +  + ++      FCAG D+        + 
Sbjct: 27  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADL----KERAKM 82

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
              E   F   + + I  +     P +A ++G+ +GGG  +++    RVA         E
Sbjct: 83  SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE 142

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           T +   P  G +  L      +G  LA     +   L+G E  A GL +H
Sbjct: 143 TKLAIIPGGGGTQRLPRA---IGMSLAKELIFSARVLDGKEAKAVGLISH 189

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 95.3 bits (237), Expect = 3e-22
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR---- 89
           +      +        NRP   NA   +   +L ++       P++G V + G+G     
Sbjct: 57  ITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 116

Query: 90  ---AFCAGGDI---VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL----KPHVAILNG 139
              AFC+GGD        +    G   +  D  R     I  +   +    K  + ++NG
Sbjct: 117 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 176

Query: 140 VTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTG 197
              GGG  + +     +A  +   F   +  +G       S YL+   G      +   G
Sbjct: 177 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 236

Query: 198 AKLNGAEMMACGL 210
                 +M   G 
Sbjct: 237 RTYTAEQMHQMGA 249

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 93.4 bits (233), Expect = 4e-22
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 12/198 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP   NAL+  +   L     A   +  +  +   G+GR F AG D            
Sbjct: 22  LSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDF----TDYETQS 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       +   +  +       +A+ +G   G G  +     +R    +  F  P  
Sbjct: 77  EGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGL 136

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH-YSVSEKLPLIEE 225
             G       +     +         +  +    +  E    G      + ++   LI+ 
Sbjct: 137 KFGLVL---GTRRFRDIVGADQALS-ILGSARAFDADEARRIGFVRDCAAQAQWPALIDA 192

Query: 226 ELGKLVTDDPSVIEACLE 243
                   DP+       
Sbjct: 193 AAEAATALDPATRATLHR 210

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 93.0 bits (232), Expect = 5e-22
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI       N+  
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKE---MQNRTF 78

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +     F + +  I  +    KP +A +NG  +GGG  +++      A  K  F  PE 
Sbjct: 79  QDCYSGKFLSHWDHITRIK---KPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           L+G  P AG +  L+     +G+ LA    LTG +++  +    GL + 
Sbjct: 136 LLGTIPGAGGTQRLTRA---VGKSLAMEMVLTGDRISAQDAKQAGLVSK 181

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 93.0 bits (232), Expect = 7e-22
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  +NRP   NAL+TNM ++    +   ++D  I    + G+G A+C GG
Sbjct: 11  LLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGG 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+          +                LL   L KP +A +NG  +GGG  +      
Sbjct: 71  DLSD----GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDI 126

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           RV+     F  PE   G  P AG+   L      +    A    LTG  L   E    GL
Sbjct: 127 RVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ---IPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 211 ATH 213
             H
Sbjct: 184 VGH 186

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 94.1 bits (234), Expect = 9e-22
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG- 107
            NRP   NA+  +   +L+ L +  + DP++  + + G G  FCAG D+ +     +   
Sbjct: 50  FNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109

Query: 108 -------------------------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
                                                      L    KP V  ++G  +
Sbjct: 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCV 169

Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKL 200
            GG  +++     +A        P   +   P AG     +H          L  TG  +
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR-LLFTGDCI 225

Query: 201 NGAEMMACGLATH 213
            GA+    GLA  
Sbjct: 226 TGAQAAEWGLAVE 238

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 18/185 (9%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +         + +  L+RP ALNALN  + A++    + ++ D  IG + + GS RAF A
Sbjct: 11  IATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAA 69

Query: 94  GGDIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           G DI      M      + ++    + +  +  +    KP VA + G  +GGG  +++  
Sbjct: 70  GADIAE----MVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCELAMLC 122

Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
              +A     F  PE  +G  P  G +  L+     +G+  A    LTG  L   E    
Sbjct: 123 DLVIAADTARFGQPEITLGILPGLGGTQRLTRA---VGKAKAMDLCLTGRSLTAEEAERV 179

Query: 209 GLATH 213
           GL + 
Sbjct: 180 GLVSR 184

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NA N  +  +L+  +     D ++  + ++ +G+ F AG D+           
Sbjct: 35  LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRG----GGPVP 90

Query: 109 LEECKDFFRTLYSFIYLLGTHL-----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
            +   +F     S  YL  +       KP +A + G  + GG  +  P    +A    +F
Sbjct: 91  DKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150

Query: 164 ATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           + P  L+            +     LG   A     TG  +   E+   G+   
Sbjct: 151 SDPVVLMDI--GGVEYHGHTWE---LGPRKAKEILFTGRAMTAEEVAQTGMVNR 199

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 90.6 bits (226), Expect = 4e-21
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + V  + +  +A LN   A NA+++ +   + +L    E D NI  V + G GR F AG 
Sbjct: 8   LSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI          +  E     +  +  +       KP +A ++G  +GGG   ++    R
Sbjct: 67  DIKEFTSVTEAKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAMSCHMR 123

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
            A        PE  +G  P    +  L      +G+  A    LT   + GAE +  GL 
Sbjct: 124 FATESAKLGLPELTLGLIPGFAGTQRLPRY---VGKAKACEMMLTSTPITGAEALKWGLV 180

Query: 212 TH 213
             
Sbjct: 181 NG 182

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 90.3 bits (225), Expect = 4e-21
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 19/183 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL+E +    +  +NRP A NA+N  +   L       ++  ++    + G+G  FCAG 
Sbjct: 9   VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+ +       G+              +        KP +A + G  + GG  + +    
Sbjct: 69  DLKA----FVSGEAVLS-------ERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDL 117

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     F  PE   G    AG       LP  +   +A    LTG      +    G 
Sbjct: 118 VVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGF 174

Query: 211 ATH 213
              
Sbjct: 175 INR 177

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL+ +M  +L   +   END  +  + + G+GRAFC+G D+      + +  
Sbjct: 26  LNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKE----IPEDG 81

Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
               +  + + Y                 KP +  +NG+  G G          +A  + 
Sbjct: 82  KVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAK--LNGAEMMACGLATH 213
            F  P   IG             +   L   +A    L G    ++       GL + 
Sbjct: 142 TFFDPHVSIGLVAGRELVR----VSRVLPRSIALRMALMGKHERMSAQRAYELGLISE 195

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 89.9 bits (224), Expect = 8e-21
 Identities = 45/169 (26%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NALN  + A L       +    I  V + G G  F AG D+      + +  
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLDLSE----LRERD 84

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             E     +T +     +     P +A L G  +GGG  ++     RVA     +A PE 
Sbjct: 85  ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             G     G S  L  L   +G        LTG   + AE +  G + +
Sbjct: 145 SRGIFVGGGGSVRLPRL---IGVARMADMMLTGRVYSAAEGVVHGFSQY 190

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
            L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G+G ++FCAG
Sbjct: 11  ALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAG 70

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGT 153
            D+ +    + + +     D     + F   +   + KP +A +NG  +GGG  +++   
Sbjct: 71  ADLKA----IARRENLYHPDHPE--WGFAGYVRHFIDKPTIAAVNGTALGGGTELALASD 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
             VA  +  F  PE   G    AG  F    +   L   +A    LTG  L+ A     G
Sbjct: 125 LVVADERAQFGLPEVKRGLIAAAGGVFR---IAEQLPRKVAMRLLLTGEPLSAAAARDWG 181

Query: 210 LATH 213
           L   
Sbjct: 182 LINE 185

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 7/187 (3%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
                    R  +L+ P   N L+  M   L        +  ++  + +   G  F +G 
Sbjct: 35  TSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGH 94

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+  L     +   +   + F+T    +  +  H  P +A++NG+    G  +       
Sbjct: 95  DLKEL---TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIA 151

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
           VA  K+ FATP   +G          L+         E +  TG  ++  E +  GL + 
Sbjct: 152 VASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE-MLFTGEPISAQEALLHGLLSK 209

Query: 214 YSVSEKL 220
                +L
Sbjct: 210 VVPEAEL 216

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 88.0 bits (219), Expect = 5e-20
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 11/170 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NRP   NA      A++   F    +D N+  + + G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             +G       S YL+ +   +G   A        + N  E +  GL   
Sbjct: 145 PKVGSFDAGYGSGYLARI---VGHKKAREIWYLCRQYNAQEALDMGLVNT 191

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 12/182 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V V         +++RP   NA+   +  ++           +IG V + G    F AG 
Sbjct: 26  VSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGD 84

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+      +      E     R     I  +    KP VA + G  +G G  +++   +R
Sbjct: 85  DMPE----LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWR 140

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           V+     F   E L G  P  G    L+ +   +G   A     +G   +  E +A GL 
Sbjct: 141 VSGDNVKFGATEILAGLIPGGGGMGRLTRV---VGSSRAKELVFSGRFFDAEEALALGLI 197

Query: 212 TH 213
             
Sbjct: 198 DD 199

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 85.3 bits (212), Expect = 3e-19
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 19/186 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCA 93
           V V       +   N    LNAL+      L +          I  + ++     + F A
Sbjct: 6   VNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSA 64

Query: 94  GGDIVSLYHFMNQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           G DI    H +  G  +     D  R +   I       KP ++++ G   GG   + + 
Sbjct: 65  GHDI----HELPSGGRDPLSYDDPLRQITRMIQKFP---KPIISMVEGSVWGGAFEMIMS 117

Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMA 207
               +A   + F+     +G   +      L+      G  +      T + +     +A
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD---AGFHIVKELIFTASPITAQRALA 174

Query: 208 CGLATH 213
            G+  H
Sbjct: 175 VGILNH 180

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 17/188 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           + V  +      IL+ P  +N +   M  +L  +     +D ++  +    +    F A 
Sbjct: 11  LRVSSEHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAH 69

Query: 95  GDIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
            D+                    + F+ +   I       +  +  L G   GGGA    
Sbjct: 70  VDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQP---QVTIVKLAGKARGGGAEFVA 126

Query: 151 PGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEM 205
                 A          E L+G  P  G + YL      +G   A    LT    +    
Sbjct: 127 AADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTADLFDAETA 183

Query: 206 MACGLATH 213
            + G    
Sbjct: 184 ASYGWINR 191

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 11  RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALN----ALNTNMGAKL 66
            +  D  ++S  +           +++ E + +     ++   A+N      +T +   +
Sbjct: 9   HHSQDPNSMSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDI 68

Query: 67  NKLFKA-----WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121
                               V +      F  GGD+      + +G      D+ +    
Sbjct: 69  TGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVR 128

Query: 122 FIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA 178
            ++     L      +A++ G  +GGG   ++     +A    +   PE L    P  GA
Sbjct: 129 GVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA 188

Query: 179 SFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
               S +   +   LA    L G   +  +++  GL   
Sbjct: 189 Y---SFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDR 224

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 29/203 (14%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-------- 87
           V +E +       + R   LNA +      +         DP +    ++G         
Sbjct: 169 VHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYR 228

Query: 88  -GRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-----KPHV 134
             R F AG ++       +SL  F+ + +L       R + +     G        KP V
Sbjct: 229 GKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWV 288

Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
           A ++G  +GGGA + +     +A     F+ P    G  P A        L    G  ++
Sbjct: 289 AAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLR----LGRFAGPRVS 344

Query: 195 ----LTGAKLNGAEMMACGLATH 213
               L G ++   E  A  L   
Sbjct: 345 RQVILEGRRIWAKEPEARLLVDE 367

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 12/165 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN    +NA++ ++    N      E D  I  V + G       G D+      M    
Sbjct: 21  LNNG-KVNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGILSGGYDL----KVM-TSS 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPE 167
            E   +      +    + +H  P +    G  +  GA + +   +R+   G       E
Sbjct: 73  AEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNE 132

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
             IG                         +     +    MA G 
Sbjct: 133 VQIGMTMHHAGIELARDRLRKSAFNR-SVINAEMFDPEGAMAAGF 176

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           VLVE  A + +A+     P  +N+L+     +L    +  END +   V +       F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AG D+      M          +++ +      L       V+ +NG    GG  V++  
Sbjct: 64  AGLDLT----EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC 119

Query: 153 TFRVACGKTVFAT--PETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
            +R+      +     ET +G          L +  GH   E     G     AE +  G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179

Query: 210 LATH 213
           +   
Sbjct: 180 IVDQ 183

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 37/187 (19%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           +          A  N P  +N +   +   L  L +   +      V    +    F   
Sbjct: 10  IKARLDGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPH 68

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYL---LGTHLKPHVAILNGVTMGGGAGVSIP 151
            D+      + +   E  K       S   L   L       +A L G   G G+   + 
Sbjct: 69  VDMT----KVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLA 124

Query: 152 GTFRVA-CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMM 206
              R A     +   PE  IG  P AGA  +L+ L   LG   A    LT +  +     
Sbjct: 125 CDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLAE 181

Query: 207 ACGLATH 213
             G    
Sbjct: 182 RYGWVNR 188

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG------RAFCAGGDIVSLYH 102
           +NRP   NA       +L   F     D  IG V + G+G       AFC+GGD      
Sbjct: 25  INRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSV--- 81

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
               G +++       +     L+ +  K  +A++ G  +GGG  + +     +A    +
Sbjct: 82  RGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAI 141

Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           F      +G       S YL+ +   +G+  A        + +  E    G+
Sbjct: 142 FGQTGPKVGSFDGGFGSSYLARI---VGQKKAREIWYLCRQYSAQEAERMGM 190

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           +  E K+   +A   +NRP   NA       ++ +       D NIG + + G+G +AFC
Sbjct: 29  IRYE-KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFC 87

Query: 93  AGGDI--------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +GGD               ++   + + +   RT            KP VA++ G ++GG
Sbjct: 88  SGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP----------KPVVAMVAGYSIGG 137

Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
           G  + +     +A    +F      +G       + Y++ +   +G+  A        + 
Sbjct: 138 GHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI---VGQKKAREIWFLCRQY 194

Query: 201 NGAEMMACGLATH 213
           +  + +  GL   
Sbjct: 195 DAKQALDMGLVNT 207

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 14/184 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           + V  +       L+   + N+ +     + N        DP+I  V +     + F AG
Sbjct: 11  LTVFKEDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAG 69

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            DI    +F+          F       +  +    + ++A L G T+GGG  +++    
Sbjct: 70  ADI----NFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDL 125

Query: 155 RVACGKTV-FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
           R    +      PE  +G     G +  L+ L   +G   A    +TG  +   E +  G
Sbjct: 126 RFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---IGYSRALDMNITGETITPQEALEIG 182

Query: 210 LATH 213
           L   
Sbjct: 183 LVNR 186

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 11/215 (5%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKGSG-RAFCAGGDIVSLYHFMN 105
                  LN+ +  +  +L+   +    + P +  V +     R FC+G +I  L    +
Sbjct: 45  RDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTH 104

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVF 163
             K+  CK    T               +A +NG   GGG  +++            +  
Sbjct: 105 AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSV 164

Query: 164 ATPE-TLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH-YSVS 217
           + PE  L+G  P  G    ++            F       + G    A  L       +
Sbjct: 165 SLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFC-TVVEGVRGERAKAWRLVDEVVKPN 223

Query: 218 EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           +    I+    +L         A     + +   D
Sbjct: 224 QFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD 258

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P   N+L+ ++   L   ++   +  ++  + + G+   F  G DI      M +G 
Sbjct: 23  LINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE-MQKGN 80

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           ++E K  + ++     LL    KP VA ++G+ +GGG  +++    R++        PE 
Sbjct: 81  VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPEL 140

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
            +G  P  G +  L  L   +G   AL    T   +   E  + GL
Sbjct: 141 QLGVIPGFGGTQRLPRL---VGLTKALEMILTSKPVKAEEGHSLGL 183

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 26/206 (12%)

Query: 9   ISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNK 68
              + +    L    +  +    L + + +          L  P   NA++  +  ++  
Sbjct: 4   SHHHHHHSSGLVPRGSHMAEYLRLPHSLAM--------IRLCNPPV-NAVSPTVIREVRN 54

Query: 69  LFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 128
             +   +D  +  + + G+   FCAG DI     F                      +  
Sbjct: 55  GLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG---LALGSLVDE-------IQR 104

Query: 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188
           + KP +A + GV +GGG  +++   +R+A  K     PE  +G  P A  +  L  +   
Sbjct: 105 YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRV--- 161

Query: 189 LGEFLAL----TGAKLNGAEMMACGL 210
           +G  +AL    +G  L+  E +  G+
Sbjct: 162 VGVPVALDLITSGKYLSADEALRLGI 187

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 8/159 (5%)

Query: 56  NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115
           N  N     +L +   A + D ++  V +      F  G DI            E     
Sbjct: 30  NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAEL-IAG 88

Query: 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD 175
                           P VA +NG+ +GGG  + +   FRV         PE  +G +P 
Sbjct: 89  NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG 148

Query: 176 AGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
            G +  L  L   +G   A+    +G +    + +    
Sbjct: 149 FGGTVRLPRL---IGVDNAVEWIASGKENRAEDALKVSA 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 4e-11
 Identities = 73/456 (16%), Positives = 120/456 (26%), Gaps = 133/456 (29%)

Query: 1   MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNT 60
           M  +K             + Q        D L N   V  K N     ++R      L  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYN-----VSRLQPYLKLRQ 142

Query: 61  NMGAKLNKLFKAWENDPNIGFVSMKGSGR-----AFCAGGDIVSLYHF----MNQGKLEE 111
                L +L        N+    + GSG+       C    +     F    +N      
Sbjct: 143 ----ALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 112 CKDFFRTLYSFIYLLGTHL---------------------------KPHVA---ILNGVT 141
            +     L   +Y +  +                            KP+     +L  V 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253

Query: 142 MGGGAGVSIPGTFRVACGKTVFAT-------------------PETLIGFHPDAGASF-- 180
                       F ++C K +  T                       +   PD   S   
Sbjct: 254 ----QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 181 -YLSHLPGHLGEFLALTGAKLNG---AEMMACGLAT-----HYSVSEKLPLIEEELGKLV 231
            YL   P  L     LT         AE +  GLAT     H +  +   +IE  L  L 
Sbjct: 309 KYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL- 366

Query: 232 TDDPSVIEACLEKYSDL-VYPDKNSVIHRIDIVDKCFGL-------DTVEEIIDSLESEA 283
             +P+        +  L V+P   S      I      L         V  +++ L    
Sbjct: 367 --EPAEYRKM---FDRLSVFPP--SA----HIPTILLSLIWFDVIKSDVMVVVNKLHK-Y 414

Query: 284 SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 343
           SL+      ST+ +       S+ + L+   E  +      +V  Y         +    
Sbjct: 415 SLVEKQPKESTISI------PSIYLELKVKLENEYALHRS-IVDHY--------NIPKTF 459

Query: 344 FYEGVRARMVDRDIAPKVPFHLS-LPKGEGLCLLPR 378
             + +    +D+     +  HL  +   E + L   
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 56/412 (13%), Positives = 123/412 (29%), Gaps = 117/412 (28%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRM-----AILNRPSALNALNTNMGAKLNK----LFKAWE 74
             S ++ +  + +++   A S        +L++      +   +   L      L    +
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK 99

Query: 75  ---NDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
                P++                 + + Y+        + +   + L          L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLE--------LR 148

Query: 132 PHVAI-LNGVTMGGGAGVSIPGTFRVACGKTVFATPETL----IGFHPDAGASFYLS--- 183
           P   + ++G  + G              GKT  A  +      +    D    F+L+   
Sbjct: 149 PAKNVLIDG--VLG-------------SGKTWVAL-DVCLSYKVQCKMDFKI-FWLNLKN 191

Query: 184 -HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL--IEEELGK----------- 229
            + P  + E L     +++         + H S + KL +  I+ EL +           
Sbjct: 192 CNSPETVLEMLQKLLYQIDP---NWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 230 LVTDD---PSVIEA----CLEKYSDLVYPDKNSVIHR-IDIVDKCFGLDT----VEEIID 277
           LV  +        A    C           K  +  R   + D      T    ++    
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 278 SL---ESEASLINDPWCGSTLRLL-KEA---SPLSLKVSLRSIREG--RFQTFDECLVRE 328
           +L   E ++ L+   +     + L +E    +P  L +   SIR+G   +  +      +
Sbjct: 297 TLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 329 YRMSLQ-GVSRLISGDFYEGVRARMVDRDIAP---KVPFHLSLPKGEGLCLL 376
               ++  ++ L   ++    R       + P    +P  L       L L+
Sbjct: 355 LTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTIL-------LSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.82
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.8
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.57
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.56
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.52
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.49
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.98
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.69
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.62
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.62
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.52
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.46
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.38
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.13
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.94
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.91
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.78
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.77
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.68
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.58
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.48
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.47
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.24
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.13
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.03
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.87
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.81
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.55
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.28
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.23
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.22
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.13
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	94.33
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	92.61
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	91.75
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.05
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	88.46
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	86.27

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=9.5e-64  Score=485.85  Aligned_cols=319  Identities=35%  Similarity=0.604  Sum_probs=280.0

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      ...++.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .+
T Consensus         5 t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~-~~   83 (353)
T 4hdt_A            5 TAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAK-AD   83 (353)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHH-TT
T ss_pred             cCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccc-hh
Confidence            34568899999999999999999999999999999999999999999999999999999 79999999999875432 23


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ......++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~  163 (353)
T 4hdt_A           84 GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGK  163 (353)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhH
Confidence            34556777788899999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             HHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          189 LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       189 ~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                      .+++|++||++++|+||+++||||+|||++++++..+++..      +.+...+..+...  .....+......|++||+
T Consensus       164 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~------~~~~~~l~~~~~~--~~~~~l~~~~~~i~~~f~  235 (353)
T 4hdt_A          164 LGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIA------DGVDAALAAHAQE--PPASPLAEQRSWIDECYT  235 (353)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHH------HCHHHHHHHHCBC--CCCCHHHHTHHHHHHHTT
T ss_pred             HHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHH------hchhHHHHHhccc--CCccchHHHHHHHHHHhC
Confidence            59999999999999999999999999999999877776642      2233444455443  234456677899999999


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                      .+++++|++.|+..    ..+|+.+.++.|+++||.|++++|++++++... +++++++.|.+++..++.   ++||+||
T Consensus       236 ~~~~~~i~~~L~~~----~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~---s~D~~EG  308 (353)
T 4hdt_A          236 GDTVADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLK---SHDLVEG  308 (353)
T ss_dssp             CSSHHHHHHHHHHH----CSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             CCCHHHHHHHHHhc----ccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhC---CchHHHH
Confidence            99999999999865    578999999999999999999999999998775 899999999999999997   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      |+|||++|+|+|+|+++
T Consensus       309 vrAfl~dekR~P~w~p~  325 (353)
T 4hdt_A          309 IRAQLVDKDRNPKWRPA  325 (353)
T ss_dssp             HHHHHC----CCCCSSC
T ss_pred             HhhhhhCcCCCCCCCCC
Confidence            99998777799999987

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.7e-62  Score=483.11  Aligned_cols=328  Identities=29%  Similarity=0.524  Sum_probs=288.0

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccC--
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG--  107 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~--  107 (378)
                      .+++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||||.| ++||+|+|++++.......  
T Consensus        39 v~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~  118 (407)
T 3ju1_A           39 VVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKG  118 (407)
T ss_dssp             EEEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTS
T ss_pred             cccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccc
Confidence            4577899999999999999999999999999999999999999999999999999999 8999999999987542211  


Q ss_pred             -ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcc
Q 017069          108 -KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (378)
Q Consensus       108 -~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (378)
                       .......++...+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus       119 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~  198 (407)
T 3ju1_A          119 QVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMP  198 (407)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhh
Confidence             2234556677778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCC-----HHHHHHHHHHhcccc--CCCCchhhhH
Q 017069          187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD-----PSVIEACLEKYSDLV--YPDKNSVIHR  259 (378)
Q Consensus       187 g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~  259 (378)
                      |..|++|++||++|+|+||+++||||+|||+++++++.++|....+..     ...+...+++|....  ..+...+..+
T Consensus       199 g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          199 GKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             TTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             HHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence            933999999999999999999999999999999988777877655433     122444455553322  2345566677


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccC
Q 017069          260 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  339 (378)
Q Consensus       260 ~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  339 (378)
                      ...|++||+ +++++|+++|+....  .++|+++.+++|+++||.|++.+|++++++...+++++++.|.+++..++.  
T Consensus       279 ~~~I~~~f~-~sv~~i~~~L~~~~~--~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~--  353 (407)
T 3ju1_A          279 QEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCA--  353 (407)
T ss_dssp             HHHHHHHTC-SCHHHHHHHHHHCCC--SCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhc-CCHHHHHHHHHhccc--ccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC--
Confidence            999999999 999999999986322  479999999999999999999999999999999999999999999999997  


Q ss_pred             CCCcHHhhHhhhhcCCCCCCCCCCC
Q 017069          340 ISGDFYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       340 ~~~d~~egv~afl~ek~r~P~~~~~  364 (378)
                       ++||+|||++|++||+|+|+|+++
T Consensus       354 -s~D~~EGvrAflidKdr~P~w~~~  377 (407)
T 3ju1_A          354 -KGDFCEGVRALLIDKDKQPKWQFA  377 (407)
T ss_dssp             -HSSHHHHHHHHTTSCCCCCCCSSS
T ss_pred             -CHHHHHHHHHHHhcCCcCCCCCCC
Confidence             999999999999888899999987

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.3e-61  Score=471.26  Aligned_cols=325  Identities=40%  Similarity=0.666  Sum_probs=288.2

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      .++.|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++........ .
T Consensus         4 ~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~-~   82 (363)
T 3bpt_A            4 AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ-K   82 (363)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC-C
T ss_pred             CCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc-H
Confidence            345689999999999999999999999999999999999999999999999999998 89999999998864321111 1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHH
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG  190 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a  190 (378)
                      ....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a  162 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLG  162 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHHH
Confidence            12234445567888999999999999999999999999999999999999999999999999999999999999999779


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccC---CCCchhhhHHHHHHHhc
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY---PDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~f  267 (378)
                      ++|++||++|+|+||+++||||+|||++++.+..+.+.++...++..+..+++.|.....   +....+......|++||
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f  242 (363)
T 3bpt_A          163 YFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF  242 (363)
T ss_dssp             HHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHT
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHh
Confidence            999999999999999999999999999998776677777777788888888888875332   22345556788999999


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                      +.+++.+++++|+..    ..+|+.+++++|+++||.|++.+|++++++...++.++++.|.+.+..++.   ++|++||
T Consensus       243 ~~~~~~ei~~al~~~----~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~D~~EG  315 (363)
T 3bpt_A          243 SANTVEEIIENLQQD----GSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEG  315 (363)
T ss_dssp             TSSSHHHHHHHHHHH----CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SSHHHHH
T ss_pred             CCCCHHHHHHHHhcc----ChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CccHHhh
Confidence            999999999999875    568999999999999999999999999999988999999999999998887   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      |++|+++|+|+|+|+++
T Consensus       316 v~Afl~eK~r~P~~~~~  332 (363)
T 3bpt_A          316 VRAVLIDKDQSPKWKPA  332 (363)
T ss_dssp             HHHHTTSCCCCCCCSSC
T ss_pred             hhheeeCCCCCCCCCCC
Confidence            99999767689999976

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.4e-60  Score=449.15  Aligned_cols=262  Identities=25%  Similarity=0.338  Sum_probs=232.2

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      .|++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.........+
T Consensus        12 sM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~   91 (274)
T 4fzw_C           12 SMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPD   91 (274)
T ss_dssp             ----CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCC
T ss_pred             cccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999876443333333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  171 (274)
T 4fzw_C           92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRAR  171 (274)
T ss_dssp             HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHH
Confidence            4455556677889999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||++++|+||+++||||+|||++++.+...                                            
T Consensus       172 A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  207 (274)
T 4fzw_C          172 AMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQ--------------------------------------------  207 (274)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHH--------------------------------------------
T ss_pred             HHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988753222                                            


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       208 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Egv~  261 (274)
T 4fzw_C          208 -----------------------QLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGR---SADYREGVS  261 (274)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   368999999999999999999999999999999999999988887   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      ||+ || |+|+|+++
T Consensus       262 AF~-eK-R~P~f~Gr  274 (274)
T 4fzw_C          262 AFL-AK-RSPQFTGK  274 (274)
T ss_dssp             HHH-C--CCCCCCCC
T ss_pred             HHh-CC-CCCCCCCC
Confidence            999 99 99999985

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-60  Score=442.52  Aligned_cols=252  Identities=28%  Similarity=0.354  Sum_probs=234.0

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++++|+|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...     ......+
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-----~~~~~~~   76 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDR-----KPDYEAH   76 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTS-----CCCHHHH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhccc-----chhhHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999987532     1223455


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++|+|+||+++||||+|||++++++...                                                 
T Consensus       157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------------  187 (254)
T 3hrx_A          157 LLSPRLSAEEALALGLVHRVVPAEKLMEEAL-------------------------------------------------  187 (254)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHH-------------------------------------------------
T ss_pred             hcCcccCHHHHHHCCCeEEecCcHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999988753222                                                 


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                        +++++|++.+|.+++.+|+++++....+++++++.|...+..++.   ++|++||++||+ |
T Consensus       188 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~-e  245 (254)
T 3hrx_A          188 ------------------SLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQ---TQDHEEGVRAFR-E  245 (254)
T ss_dssp             ------------------HHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH-T
T ss_pred             ------------------HHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-C
Confidence                              368999999999999999999999999999999999999999987   999999999999 9


Q ss_pred             CCCCCCCCCC
Q 017069          355 RDIAPKVPFH  364 (378)
Q Consensus       355 k~r~P~~~~~  364 (378)
                      | |+|+|+++
T Consensus       246 K-R~P~f~Gr  254 (254)
T 3hrx_A          246 K-RPPRFQGR  254 (254)
T ss_dssp             T-SCCCCCCC
T ss_pred             C-CCCCCCCC
Confidence            9 99999985

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=9.2e-60  Score=439.99  Aligned_cols=254  Identities=22%  Similarity=0.303  Sum_probs=232.9

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      +..|.++++|+|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    .  ..
T Consensus         4 ms~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~--~~   77 (258)
T 4fzw_A            4 MSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK----D--LA   77 (258)
T ss_dssp             -CEEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC----C--HH
T ss_pred             CCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc----h--hh
Confidence            34588999999999999999999999999999999999999999999999999999999999999987631    1  12


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |+
T Consensus        78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~  157 (258)
T 4fzw_A           78 ATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLAS  157 (258)
T ss_dssp             HHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             hHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHH
Confidence            23334456788889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|||++++.+...                                              
T Consensus       158 ~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  191 (258)
T 4fzw_A          158 KMVLSGESITAQQAQQAGLVSDVFPSDLTLEYAL----------------------------------------------  191 (258)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH----------------------------------------------
T ss_pred             HHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998854222                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++++|.+++.+|+++++....+++++++.|.+.+..++.   ++|++||+++|
T Consensus       192 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~AF  247 (258)
T 4fzw_A          192 ---------------------QLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAA---TEDRHEGISAF  247 (258)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                                 368999999999999999999999999999999999999999987   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + || |+|+|+++
T Consensus       248 ~-eK-R~P~f~Gr  258 (258)
T 4fzw_A          248 L-QK-RTPDFKGR  258 (258)
T ss_dssp             H-TT-SCCCCCCC
T ss_pred             h-CC-CCCCCCCC
Confidence            9 99 99999985

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.2e-57  Score=430.64  Aligned_cols=262  Identities=22%  Similarity=0.255  Sum_probs=241.0

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..........
T Consensus        14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   93 (279)
T 3g64_A           14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA   93 (279)
T ss_dssp             SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence            44788999999999999999999999999999999999999999999999999999999999999999987654333333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCcc-CCcchHHHHhhcchHH
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGASFYLSHLPGHL  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~r~~g~~  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence            444566667889999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |++|++||+.++|+||+++||||+|+|++++.+...                                           
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------  210 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAAR-------------------------------------------  210 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHH-------------------------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999988854222                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                                              +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+
T Consensus       211 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~  263 (279)
T 3g64_A          211 ------------------------TLARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMT---GEDYAEFH  263 (279)
T ss_dssp             ------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence                                    368999999999999999999999989999999999999999887   99999999


Q ss_pred             hhhhcCCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPFH  364 (378)
Q Consensus       349 ~afl~ek~r~P~~~~~  364 (378)
                      ++|+ +| |+|+|+++
T Consensus       264 ~af~-ek-r~p~f~g~  277 (279)
T 3g64_A          264 AAFT-EK-RPPKWQGR  277 (279)
T ss_dssp             HHHH-TT-SCCCCCCC
T ss_pred             HHHh-cC-CCCCCCCC
Confidence            9999 88 99999976

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=2.9e-57  Score=423.98  Aligned_cols=258  Identities=22%  Similarity=0.294  Sum_probs=234.7

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +|++.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ....
T Consensus         3 ~m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~   78 (261)
T 3pea_A            3 AMLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV---TEAK   78 (261)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT---CCHH
T ss_pred             ccccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc---Cchh
Confidence            467889999999999999999998 999999999999999999999999999999999999999999987542   2223


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  158 (261)
T 3pea_A           79 QATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAK  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            3344455566788999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.++++||+.++|+||+++||||+|+|++++.+..                                             
T Consensus       159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------  193 (261)
T 3pea_A          159 ACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDT---------------------------------------------  193 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHH---------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988775322                                             


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .+++++|++.+|.+++.+|++++.+...+++++++.|...+..++.   ++|++||++
T Consensus       194 ----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  248 (261)
T 3pea_A          194 ----------------------LKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFT---SEDGREGVA  248 (261)
T ss_dssp             ----------------------HHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---SHHHHHHHH
T ss_pred             ----------------------HHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                  2368999999999999999999998888899999999999999987   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+ +| |+|+|+++
T Consensus       249 af~-ek-r~P~f~g~  261 (261)
T 3pea_A          249 AFL-EK-RKPSFSGR  261 (261)
T ss_dssp             HHH-TT-SCCCCCC-
T ss_pred             HHH-cC-CCCCCCCC
Confidence            999 88 99999864

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=5.9e-57  Score=422.73  Aligned_cols=256  Identities=21%  Similarity=0.322  Sum_probs=237.5

Q ss_pred             CCceEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~-~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ++.|.++ .+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    ...
T Consensus         7 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~   82 (265)
T 3kqf_A            7 LQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM----NEE   82 (265)
T ss_dssp             CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC----CHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc----CHH
Confidence            5779999 8999999999999999999999999999999999999999999999999 999999999987642    344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  162 (265)
T 3kqf_A           83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  162 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            4556677788899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||+.++|+||+++||||+|+|++++.+..                                             
T Consensus       163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------  197 (265)
T 3kqf_A          163 AKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKA---------------------------------------------  197 (265)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHH---------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988775322                                             


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .+++++|++.+|.+++.+|++++++...+++++++.|.+.+..++.   ++|++||++
T Consensus       198 ----------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  252 (265)
T 3kqf_A          198 ----------------------IEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIH---TKDRLEGLQ  252 (265)
T ss_dssp             ----------------------HHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred             ----------------------HHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                  2368999999999999999999999999999999999999999987   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+ +| |+|+|+++
T Consensus       253 af~-ek-r~p~f~g~  265 (265)
T 3kqf_A          253 AFK-EK-RTPMYKGE  265 (265)
T ss_dssp             HHH-TT-SCCCCCCC
T ss_pred             HHH-cC-CCCCCCCC
Confidence            999 88 99999864

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-56  Score=424.98  Aligned_cols=263  Identities=21%  Similarity=0.269  Sum_probs=231.5

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCC-
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK-  108 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~-  108 (378)
                      +.++..|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........ 
T Consensus        20 ~~m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   99 (290)
T 3sll_A           20 GSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGL   99 (290)
T ss_dssp             ---CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTC
T ss_pred             CCCCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccc
Confidence            3466789999999999999999999999999999999999999999999999999999999999999998764321111 


Q ss_pred             --hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCC-cchHHHHhhc
Q 017069          109 --LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD-AGASFYLSHL  185 (378)
Q Consensus       109 --~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~l~r~  185 (378)
                        ......+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~  179 (290)
T 3sll_A          100 TQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRA  179 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHH
Confidence              1224456677788999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      +|.. +++|++||+.++|+||+++||||+|||++++.+..                                        
T Consensus       180 vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a----------------------------------------  219 (290)
T 3sll_A          180 IGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEEC----------------------------------------  219 (290)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHH----------------------------------------
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHH----------------------------------------
Confidence            9998 99999999999999999999999999988875322                                        


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcc-ccCCCC
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGV-SRLISG  342 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~-~~~~~~  342 (378)
                                                 .+++++|++.||.+++.+|++++.... .+++++++.|...+..++ .   ++
T Consensus       220 ---------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~---s~  269 (290)
T 3sll_A          220 ---------------------------YAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLL---TD  269 (290)
T ss_dssp             ---------------------------HHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH---CC
T ss_pred             ---------------------------HHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhc---CH
Confidence                                       236899999999999999999999988 899999999999999888 8   99


Q ss_pred             cHHhhHhhhhcCCCCCCCCCCC
Q 017069          343 DFYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       343 d~~egv~afl~ek~r~P~~~~~  364 (378)
                      |++||+++|+ +| |+|+|+++
T Consensus       270 d~~eg~~AFl-ek-R~P~f~g~  289 (290)
T 3sll_A          270 NFEEATAARK-EK-RPAEFRDK  289 (290)
T ss_dssp             HHHHHHHHHH-TT-SCCCCCSC
T ss_pred             HHHHHHHHHH-cC-CCCCCCCC
Confidence            9999999999 88 99999975

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.8e-56  Score=419.78  Aligned_cols=258  Identities=20%  Similarity=0.273  Sum_probs=232.4

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ......
T Consensus         3 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   81 (268)
T 3i47_A            3 LSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMAN-FTEEEN   81 (268)
T ss_dssp             CCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHT-CCHHHH
T ss_pred             CCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhcccc-ccHHHH
Confidence            5679999999999999999999999999999999999999999999999999999999999999999875321 223333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. |+
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~  160 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK  160 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence            3455667788999999999999999999999999999999999999999999999999999999887 789999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|||++++++..                                               
T Consensus       161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a-----------------------------------------------  193 (268)
T 3i47_A          161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFT-----------------------------------------------  193 (268)
T ss_dssp             HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHH-----------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999998775322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE-CLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~-~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          .+++++|++.||.+++.+|++++.....++++ .++.|.+.+..++.   ++|++||+++
T Consensus       194 --------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~---s~d~~eg~~A  250 (268)
T 3i47_A          194 --------------------LKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRV---SDEGQEGLKA  250 (268)
T ss_dssp             --------------------HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH---SHHHHHHHHH
T ss_pred             --------------------HHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                23689999999999999999999988888887 68899999988887   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ || |+|+|++.
T Consensus       251 F~-ek-R~p~f~~~  262 (268)
T 3i47_A          251 FL-NK-EIPNWNEG  262 (268)
T ss_dssp             HH-HT-CCCTTC--
T ss_pred             HH-cC-CCCCCCCC
Confidence            99 88 99999875

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.6e-56  Score=417.52  Aligned_cols=252  Identities=26%  Similarity=0.365  Sum_probs=231.5

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..        
T Consensus         3 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~--------   74 (255)
T 3p5m_A            3 GSMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT--------   74 (255)
T ss_dssp             CCBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH--------
T ss_pred             CCCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc--------
Confidence            345679999999999999999999999999999999999999999999999999999999999999998651        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  152 (255)
T 3p5m_A           75 --AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRAR  152 (255)
T ss_dssp             --HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHH
T ss_pred             --hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence              13455677888999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |.+|++||+.++|+||+++||||+|+|++++++...                                            
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  188 (255)
T 3p5m_A          153 TSRMAMTAEKISAATAFEWGMISHITSADEYESVLT--------------------------------------------  188 (255)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999998854222                                            


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                             +++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++||++
T Consensus       189 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  242 (255)
T 3p5m_A          189 -----------------------DVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVE---TADFREGAR  242 (255)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   358899999999999999999999888999999999999999887   999999999


Q ss_pred             hhhcCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFH  364 (378)
Q Consensus       350 afl~ek~r~P~~~~~  364 (378)
                      +|+ +| |+|+|+++
T Consensus       243 af~-ek-r~p~f~g~  255 (255)
T 3p5m_A          243 AFR-ER-RTPNFRGH  255 (255)
T ss_dssp             HHH-TT-SCCCCCCC
T ss_pred             HHH-cC-CCCCCCCC
Confidence            999 88 99999864

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=3.2e-57  Score=426.11  Aligned_cols=255  Identities=23%  Similarity=0.200  Sum_probs=231.5

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.+  |+++++|||||.|++||+|+|++++..    ......
T Consensus        15 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~   88 (275)
T 3hin_A           15 PSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE----RDATEG   88 (275)
T ss_dssp             GGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC----CCHHHH
T ss_pred             CCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc----cChhhH
Confidence            56799999999999999999999999999999999999998  579999999999999999999998753    233333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |+
T Consensus        89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  168 (275)
T 3hin_A           89 LVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMA  168 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|||++++.+..                                               
T Consensus       169 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a-----------------------------------------------  201 (275)
T 3hin_A          169 DMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKA-----------------------------------------------  201 (275)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHH-----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHH-----------------------------------------------
Confidence            999999999999999999999999999885322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                          .+++++|++.+|.+++.+|+++++....+++++++.|...+..++.   ++|++||+++|
T Consensus       202 --------------------~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~AF  258 (275)
T 3hin_A          202 --------------------LELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQS---DQEAKTRIRAF  258 (275)
T ss_dssp             --------------------HHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                2368999999999999999999999999999999999999988887   99999999999


Q ss_pred             hcCCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFHL  365 (378)
Q Consensus       352 l~ek~r~P~~~~~~  365 (378)
                      + +| |+|+|++++
T Consensus       259 ~-ek-R~p~f~~~~  270 (275)
T 3hin_A          259 L-DH-KTAKVREGH  270 (275)
T ss_dssp             H-HH-HHHHC----
T ss_pred             H-cC-CCCCCCCCC
Confidence            9 88 999998764

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=3.6e-56  Score=418.46  Aligned_cols=264  Identities=21%  Similarity=0.261  Sum_probs=234.3

Q ss_pred             CceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-cCChHHH
Q 017069           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLEEC  112 (378)
Q Consensus        34 ~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~  112 (378)
                      +.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .+.....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999998642100 0001111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM  162 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence            24445577888999999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|+|++++.+.                                                
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~------------------------------------------------  194 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPKDEFREV------------------------------------------------  194 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHHHHHHH------------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCHHHHHHH------------------------------------------------
Confidence            99999999999999999999999997766431                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.+++++|++.+|.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+++|
T Consensus       195 -------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af  252 (269)
T 1nzy_A          195 -------------------AWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLTRF  252 (269)
T ss_dssp             -------------------HHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHHHH
T ss_pred             -------------------HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                               22368899999999999999999999888999999999999998887   99999999999


Q ss_pred             hcCCCCCCCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFHLSLPKG  370 (378)
Q Consensus       352 l~ek~r~P~~~~~~~~~~~  370 (378)
                      + +| |+|+|+++ .+|++
T Consensus       253 ~-ek-r~p~f~~~-~l~~~  268 (269)
T 1nzy_A          253 L-DG-HRADRPQV-ELPAG  268 (269)
T ss_dssp             H-TT-CCTTCCSS-CCCCC
T ss_pred             H-hc-CCCCCCCC-CCCCC
Confidence            9 88 99999987 36653

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=1.9e-56  Score=422.16  Aligned_cols=259  Identities=24%  Similarity=0.276  Sum_probs=219.3

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ....+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......   
T Consensus        16 ~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---   92 (278)
T 4f47_A           16 GESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG---   92 (278)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-----------------
T ss_pred             CCCCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchh---
Confidence            34567899999999999999999999999999999999999999999999999999999999999999988643111   


Q ss_pred             HHHHHHHHHHHHHHHHHh---cCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcc
Q 017069          110 EECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~---~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (378)
                      ... ........++..+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        93 ~~~-~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  171 (278)
T 4f47_A           93 DSF-KDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQI  171 (278)
T ss_dssp             ---------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHS
T ss_pred             hhH-HHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence            110 10112234455566   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHH
Q 017069          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (378)
Q Consensus       187 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (378)
                      |.. +++|++||+.++|+||+++||||+|+|++++.+..                                         
T Consensus       172 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a-----------------------------------------  210 (278)
T 4f47_A          172 PYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKA-----------------------------------------  210 (278)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHH-----------------------------------------
T ss_pred             CHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHH-----------------------------------------
Confidence            999 99999999999999999999999999998885322                                         


Q ss_pred             hcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHH
Q 017069          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (378)
Q Consensus       266 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  345 (378)
                                                .+++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|++
T Consensus       211 --------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~  261 (278)
T 4f47_A          211 --------------------------LEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFL---SDDAK  261 (278)
T ss_dssp             --------------------------HHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGG---SSHHH
T ss_pred             --------------------------HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                      2368999999999999999999999988999999999999999987   99999


Q ss_pred             hhHhhhhcCCCCCCCCCCC
Q 017069          346 EGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       346 egv~afl~ek~r~P~~~~~  364 (378)
                      ||+++|+ +| |+|+|+++
T Consensus       262 eg~~Af~-ek-r~p~f~g~  278 (278)
T 4f47_A          262 EGPQAFA-QK-RKPNFQNR  278 (278)
T ss_dssp             HHHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHHh-cC-CCCCCCCC
Confidence            9999999 88 99999874

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=2.2e-56  Score=420.98  Aligned_cols=254  Identities=25%  Similarity=0.401  Sum_probs=230.2

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    .... 
T Consensus        24 ~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~-   98 (278)
T 3h81_A           24 YETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL----TFAD-   98 (278)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTC----CHHH-
T ss_pred             CCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhcc----Chhh-
Confidence            56799999999999999999999999999999999999999999999999999999999999999998642    1111 


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                       .+.......+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (278)
T 3h81_A           99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM  177 (278)
T ss_dssp             -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence             2222222236788999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|+|++++.+.                                                
T Consensus       178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~------------------------------------------------  209 (278)
T 3h81_A          178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTE------------------------------------------------  209 (278)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH------------------------------------------------
T ss_pred             HHHHhCCCcCHHHHHHCCCccEEeChhHHHHH------------------------------------------------
Confidence            99999999999999999999999998877432                                                


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                         +.+++++|++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||+++|
T Consensus       210 -------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~AF  267 (278)
T 3h81_A          210 -------------------ARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFA---TEDQSEGMAAF  267 (278)
T ss_dssp             -------------------HHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                               22468999999999999999999999989999999999999999887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       268 ~-ek-R~P~f~g~  278 (278)
T 3h81_A          268 I-EK-RAPQFTHR  278 (278)
T ss_dssp             H-TT-SCCCCCCC
T ss_pred             H-cC-CCCCCCCC
Confidence            9 98 99999864

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.4e-56  Score=418.07  Aligned_cols=254  Identities=24%  Similarity=0.301  Sum_probs=231.9

Q ss_pred             CCceEEEeeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~-v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.|.++.+++ |++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    ....
T Consensus         8 ~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~   83 (263)
T 3moy_A            8 YTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTL----TPHQ   83 (263)
T ss_dssp             CSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTC----CHHH
T ss_pred             CCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhcc----Cchh
Confidence            46799999998 999999999999999999999999999999999999999999999999999999987532    1211


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                        .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |
T Consensus        84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  161 (263)
T 3moy_A           84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA  161 (263)
T ss_dssp             --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHH
Confidence              2234456678899999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|+|++++.+.                                               
T Consensus       162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~-----------------------------------------------  194 (263)
T 3moy_A          162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDE-----------------------------------------------  194 (263)
T ss_dssp             HHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHH-----------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecCchHHHHH-----------------------------------------------
Confidence            999999999999999999999999998877432                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                          +.+++++|++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||+++
T Consensus       195 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~A  251 (263)
T 3moy_A          195 --------------------ALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFD---THDQTEGMTA  251 (263)
T ss_dssp             --------------------HHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                22368999999999999999999999999999999999999999887   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ || |+|+|+++
T Consensus       252 F~-ek-R~p~f~g~  263 (263)
T 3moy_A          252 FL-EK-RTPEFTDR  263 (263)
T ss_dssp             HH-TT-SCCCCCCC
T ss_pred             HH-hC-CCCCCCCC
Confidence            99 98 99999874

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.2e-55  Score=417.80  Aligned_cols=254  Identities=19%  Similarity=0.236  Sum_probs=235.8

Q ss_pred             ceEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           35 QVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        35 ~v~~~~~--~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      .|.++++  ++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..   .......
T Consensus        25 ~v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~~  101 (286)
T 3myb_A           25 PLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREYY  101 (286)
T ss_dssp             CSEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHHH
T ss_pred             eEEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHHH
Confidence            3899999  9999999999999999999999999999999999999999999999999999999999864   2334455


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. |.
T Consensus       102 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~  180 (286)
T 3myb_A          102 EKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAF  180 (286)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHH
Confidence            6677788899999999999999999999999999999999999999999999999999999 788999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|||++++.+...                                              
T Consensus       181 ~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  214 (286)
T 3myb_A          181 EMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIE----------------------------------------------  214 (286)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888753222                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|++||+++|
T Consensus       215 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~aF  270 (286)
T 3myb_A          215 ---------------------AMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMM---DPSALEGVSAF  270 (286)
T ss_dssp             ---------------------HHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 358899999999999999999999888999999999999999998   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       271 l-ek-r~p~f~g~  281 (286)
T 3myb_A          271 L-EK-RRPEWHTP  281 (286)
T ss_dssp             H-TT-SCCCCCCC
T ss_pred             H-cc-CCCCCCCC
Confidence            9 88 99999986

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=3.8e-56  Score=417.38  Aligned_cols=258  Identities=21%  Similarity=0.276  Sum_probs=219.6

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus         3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T 3fdu_A            3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP   82 (266)
T ss_dssp             CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC
T ss_pred             CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh
Confidence            35679999999999999999999999999999999999999999999999999999999999999999873211111110


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                        ......+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        83 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (266)
T 3fdu_A           83 --AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA  160 (266)
T ss_dssp             --GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence              1223456778889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|++||+.++|+||+++||||+|+|  ++.+                                                
T Consensus       161 ~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~------------------------------------------------  190 (266)
T 3fdu_A          161 AELLFTAKKFNAETALQAGLVNEIVE--DAYA------------------------------------------------  190 (266)
T ss_dssp             HHHHHHCCEECHHHHHHTTSCSEECS--CHHH------------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCHHHHHH--HHHH------------------------------------------------
Confidence            99999999999999999999999999  5542                                                


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                         .+.+++++|++.||.+++.+|++++... .+++++++.|...+..++.   ++|++||+++
T Consensus       191 -------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  247 (266)
T 3fdu_A          191 -------------------TAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQ---SPEMLEAVQA  247 (266)
T ss_dssp             -------------------HHHHHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                               2224689999999999999999999875 4689999999999999987   9999999999


Q ss_pred             hhcCCCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFHLS  366 (378)
Q Consensus       351 fl~ek~r~P~~~~~~~  366 (378)
                      |+ +| |+|+|++.+.
T Consensus       248 F~-ek-R~p~~~~~~~  261 (266)
T 3fdu_A          248 FM-QK-RQPDFSQEGH  261 (266)
T ss_dssp             HC--------------
T ss_pred             HH-cC-CCCCCCCCCc
Confidence            99 88 9999998754

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.4e-55  Score=411.85  Aligned_cols=255  Identities=30%  Similarity=0.391  Sum_probs=226.5

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....   ..+..
T Consensus         2 m~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~~   78 (257)
T 2ej5_A            2 YETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEM---DHGDV   78 (257)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC----------CHHHH
T ss_pred             CCceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhcc---chhHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999875421   11111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ...  .++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.
T Consensus        79 ~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T 2ej5_A           79 LRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKAL  156 (257)
T ss_dssp             HHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHH
Confidence            111  256788899999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      ++++||+.++|+||+++||||+|+|++++.+...                                              
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  190 (257)
T 2ej5_A          157 ELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVK----------------------------------------------  190 (257)
T ss_dssp             HHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCccCHHHHHHcCCcceecChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887743222                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++.||.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+++|
T Consensus       191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af  246 (257)
T 2ej5_A          191 ---------------------QFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGL---TSDHREGVKAF  246 (257)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---ChHHHHHHHHH
Confidence                                 358899999999999999999999888999999999999998887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       247 ~-ek-r~p~~~~~  257 (257)
T 2ej5_A          247 F-EK-RKPLFQGN  257 (257)
T ss_dssp             T-TT-CCCCCCCC
T ss_pred             h-cC-CCCCCCCC
Confidence            9 88 99999863

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.1e-55  Score=410.42  Aligned_cols=257  Identities=18%  Similarity=0.193  Sum_probs=233.1

Q ss_pred             cccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CCCCcccCCChhhHHHhhccC
Q 017069           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQG  107 (378)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~  107 (378)
                      ..+.++.+.++.+++|++|||||| +.|+||.+|+.+|.++++.++.|+++++||||| .|++||+|+|++++..    .
T Consensus         4 ~~~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~   78 (265)
T 2ppy_A            4 VETKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS----A   78 (265)
T ss_dssp             EEEECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT----S
T ss_pred             cCCCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc----c
Confidence            344577899999999999999999 899999999999999999999999999999999 8999999999998753    1


Q ss_pred             ChHHHHHHHHHH-HHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCce-EEeccccccCccCCcchHHHHhhc
Q 017069          108 KLEECKDFFRTL-YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       108 ~~~~~~~~~~~~-~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                      . .....+...+ +.++.++.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+++
T Consensus        79 ~-~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 2ppy_A           79 D-PRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL  157 (265)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHH
T ss_pred             c-hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHH
Confidence            1 2223344455 778889999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      +|.. +.++++||+.++|+||+++||||+|+|++++.+...                                       
T Consensus       158 vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------  198 (265)
T 2ppy_A          158 IGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTR---------------------------------------  198 (265)
T ss_dssp             HCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHH---------------------------------------
T ss_pred             hCHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------
Confidence            9998 999999999999999999999999999887753222                                       


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcH
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  344 (378)
                                                  +++++|++.+|.+++.+|++++.+...+++++++.|.+.+..++.   ++|+
T Consensus       199 ----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~  247 (265)
T 2ppy_A          199 ----------------------------EYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFR---SEDA  247 (265)
T ss_dssp             ----------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHH
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHH
Confidence                                        358899999999999999999999888999999999999998887   9999


Q ss_pred             HhhHhhhhcCCCCCCCCCC
Q 017069          345 YEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       345 ~egv~afl~ek~r~P~~~~  363 (378)
                      +||+++|+ +| |+|+|++
T Consensus       248 ~egi~af~-ek-r~p~~~~  264 (265)
T 2ppy_A          248 KEGLSAFL-EK-RQPNWKG  264 (265)
T ss_dssp             HHHHHHHH-TT-SCCCCCC
T ss_pred             HHHHHHHH-cC-CCCCCCC
Confidence            99999999 88 9999986

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-55  Score=413.48  Aligned_cols=253  Identities=24%  Similarity=0.282  Sum_probs=224.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++ ...   .  . ..
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~---~--~-~~   80 (265)
T 3rsi_A            8 ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW---M--V-RD   80 (265)
T ss_dssp             -CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------
T ss_pred             CCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc---c--c-ch
Confidence            567999999999999999999999999999999999999999999999999999999999999998 211   1  1 11


Q ss_pred             HHHHHHHHH-HHHHH-h--cCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          113 KDFFRTLYS-FIYLL-G--THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       113 ~~~~~~~~~-l~~~i-~--~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ..+....+. ++..+ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  160 (265)
T 3rsi_A           81 GSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPY  160 (265)
T ss_dssp             ----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCH
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            122223345 77888 8  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +++|++||+.++|+||+++||||+|+|++++.+..                                           
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a-------------------------------------------  197 (265)
T 3rsi_A          161 TKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKA-------------------------------------------  197 (265)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHH-------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHH-------------------------------------------
Confidence            9 99999999999999999999999999998885422                                           


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              .+++++|++.||.+++.+|+++++....+++++++.|.+.+..++.   ++|++||
T Consensus       198 ------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg  250 (265)
T 3rsi_A          198 ------------------------RSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVIT---SADAREG  250 (265)
T ss_dssp             ------------------------HHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ------------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                    2368999999999999999999999988999999999999999987   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +++|+ +| |+|+|+++
T Consensus       251 ~~af~-ek-r~p~f~g~  265 (265)
T 3rsi_A          251 LAAFK-EK-REARFTGR  265 (265)
T ss_dssp             HHHHH-HT-SCCCCCCC
T ss_pred             HHHHH-cC-CCCCCCCC
Confidence            99999 88 99999874

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3e-56  Score=418.08  Aligned_cols=256  Identities=18%  Similarity=0.163  Sum_probs=229.5

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++.........   
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~---   84 (265)
T 3swx_A            8 YETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGAS---   84 (265)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CC---
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhH---
Confidence            57899999999999999999999999999999999999999999999999999999999999999998754221111   


Q ss_pred             HHHHHHHHHHHHHH-hcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          113 KDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       113 ~~~~~~~~~l~~~i-~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       .+......++..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        85 -~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  163 (265)
T 3swx_A           85 -LTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA  163 (265)
T ss_dssp             -CCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHH
Confidence             0111223345567 899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|+|++++.+...                                             
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  198 (265)
T 3swx_A          164 MRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAI---------------------------------------------  198 (265)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988753222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++|++.||.+++.+|+++++....+++++++.|...+..++.   ++|++||+++
T Consensus       199 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  253 (265)
T 3swx_A          199 ----------------------AIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFT---SEDATLGVQA  253 (265)
T ss_dssp             ----------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  358999999999999999999999888999999999999999987   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ +| |+|+|+++
T Consensus       254 f~-ek-r~p~f~g~  265 (265)
T 3swx_A          254 FL-SR-TTAEFVGR  265 (265)
T ss_dssp             HH-TT-CCCCCCCC
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 88 99999874

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.9e-55  Score=417.24  Aligned_cols=263  Identities=20%  Similarity=0.244  Sum_probs=223.2

Q ss_pred             ccCCCceEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCC
Q 017069           30 DDLCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      ...++.|.++.+++|++|||| ||++.|+||.+|+.+|.++|+.++.|+. ++|||||.|+.||+|+|++++........
T Consensus        19 ~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~   97 (291)
T 2fbm_A           19 SSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNR   97 (291)
T ss_dssp             --CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCH
T ss_pred             CCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccc
Confidence            456778999999999999999 6999999999999999999999998875 99999999999999999998864221111


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ......+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  177 (291)
T 2fbm_A           98 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  177 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence            12233444556778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . |++|++||+.++|+||+++||||+|+|++++.+...                                          
T Consensus       178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------  215 (291)
T 2fbm_A          178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM------------------------------------------  215 (291)
T ss_dssp             HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHH------------------------------------------
Confidence            8 999999999999999999999999999988853222                                          


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                               +++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++||
T Consensus       216 -------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg  267 (291)
T 2fbm_A          216 -------------------------IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQGIES  267 (291)
T ss_dssp             -------------------------HHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                     358899999999999999999988777899999999999988887   9999999


Q ss_pred             Hhhh-hcCCCCCCCCCCCC
Q 017069          348 VRAR-MVDRDIAPKVPFHL  365 (378)
Q Consensus       348 v~af-l~ek~r~P~~~~~~  365 (378)
                      +++| + +| |+|+|+++.
T Consensus       268 ~~Af~~-ek-R~P~f~~~~  284 (291)
T 2fbm_A          268 MLKIPL-LG-YKAAFPPRK  284 (291)
T ss_dssp             HHTC---------------
T ss_pred             HHHHHh-cC-CCCCCCCCC
Confidence            9999 9 88 999999863

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2.9e-56  Score=420.21  Aligned_cols=261  Identities=21%  Similarity=0.283  Sum_probs=226.5

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc--cC-
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--QG-  107 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~--~~-  107 (378)
                      ++++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....  .. 
T Consensus         8 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (274)
T 3tlf_A            8 DSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYER   87 (274)
T ss_dssp             CCCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------
T ss_pred             CcCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhcccccccc
Confidence            466789999999999999999999999999999999999999999999999999999999999999998864321  00 


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcch
Q 017069          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (378)
                      ........+..++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG  166 (274)
T 3tlf_A           88 PYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP  166 (274)
T ss_dssp             CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence            0000011122334567778999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HH-HHHHHhcCC--CCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          188 HL-GEFLALTGA--KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       188 ~~-a~~l~ltG~--~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      .. |.+|++||+  .++|+||+++||||+|+|++++++.                                         
T Consensus       167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~-----------------------------------------  205 (274)
T 3tlf_A          167 RSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLER-----------------------------------------  205 (274)
T ss_dssp             HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHH-----------------------------------------
Confidence            99 999999999  9999999999999999998877532                                         


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcH
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  344 (378)
                                                +.+++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|+
T Consensus       206 --------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~  256 (274)
T 3tlf_A          206 --------------------------AHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLR---TEDA  256 (274)
T ss_dssp             --------------------------HHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHH
T ss_pred             --------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHH
Confidence                                      22468999999999999999999999989999999999999999987   9999


Q ss_pred             HhhHhhhhcCCCCCCCCCCC
Q 017069          345 YEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       345 ~egv~afl~ek~r~P~~~~~  364 (378)
                      +||+++|+ +| |+|+|+++
T Consensus       257 ~eg~~af~-ek-r~p~f~g~  274 (274)
T 3tlf_A          257 AEGPRAFV-EK-RQPNWQCR  274 (274)
T ss_dssp             HHHHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHHHh-cC-CCCCCCCC
Confidence            99999999 88 99999864

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.4e-55  Score=412.87  Aligned_cols=258  Identities=19%  Similarity=0.252  Sum_probs=227.8

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCc-ccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF-CAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F-~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.| |+|+|++++...........
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~   82 (263)
T 3lke_A            3 LSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR   82 (263)
T ss_dssp             CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHH
T ss_pred             CcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHH
Confidence            46799999999999999999999999999999999999999999999999999999999 99999999875211223344


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A  162 (263)
T 3lke_A           83 LREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQT  162 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHH
Confidence            556677788899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecC-CCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSV-SEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      ++|++||+.++|+||+++||||+|+| ++++.+.                                              
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~----------------------------------------------  196 (263)
T 3lke_A          163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQER----------------------------------------------  196 (263)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHH----------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHH----------------------------------------------
Confidence            99999999999999999999999999 6666432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       197 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~e~~~  252 (263)
T 3lke_A          197 ---------------------VKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFK---QTEIKKRLE  252 (263)
T ss_dssp             ---------------------HHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                 22468999999999999999999998888899999999999999987   999999999


Q ss_pred             hhhcCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVP  362 (378)
Q Consensus       350 afl~ek~r~P~~~  362 (378)
                      +|+ || ++|.|+
T Consensus       253 ~~~-~~-~~~~~~  263 (263)
T 3lke_A          253 ALV-EG-HHHHHH  263 (263)
T ss_dssp             HC-----------
T ss_pred             hhh-cc-CCCCCC
Confidence            999 88 899885

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=6e-55  Score=411.49  Aligned_cols=260  Identities=20%  Similarity=0.257  Sum_probs=231.0

Q ss_pred             CCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC---C
Q 017069           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K  108 (378)
Q Consensus        33 ~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~  108 (378)
                      |+.|.+++ +++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++.......   .
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            45788888 5789999999999999999999999999999999999999999999999999999999886532111   1


Q ss_pred             h----HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhh
Q 017069          109 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  184 (378)
Q Consensus       109 ~----~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (378)
                      .    .....+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  161 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence            1    112233455677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchH-H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHH
Q 017069          185 LPGH-L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (378)
Q Consensus       185 ~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (378)
                      ++|. . |++|++||+.++|+||+++||||+|+|+ +++.+  +                                    
T Consensus       162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~--~------------------------------------  203 (275)
T 1dci_A          162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLN--A------------------------------------  203 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHH--H------------------------------------
T ss_pred             HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHH--H------------------------------------
Confidence            9998 8 9999999999999999999999999998 66532  1                                    


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCC
Q 017069          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (378)
Q Consensus       262 ~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  341 (378)
                                                   +.+++++|++.||.+++.+|++++++...+++++++.|...+..++.   +
T Consensus       204 -----------------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s  251 (275)
T 1dci_A          204 -----------------------------AFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             -----------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             -----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---C
Confidence                                         22368999999999999999999999888999999999999888886   9


Q ss_pred             CcHHhhHhhhhcCCC--CCCCCCC
Q 017069          342 GDFYEGVRARMVDRD--IAPKVPF  363 (378)
Q Consensus       342 ~d~~egv~afl~ek~--r~P~~~~  363 (378)
                      +|++||+++|+ +|+  |+|+|++
T Consensus       252 ~d~~eg~~af~-ek~~~r~p~f~~  274 (275)
T 1dci_A          252 QDIIKSVQAAM-EKKDSKSITFSK  274 (275)
T ss_dssp             HHHHHHHHHHH-TTCCGGGCCCCC
T ss_pred             HHHHHHHHHHH-hcCCCCCCCCCC
Confidence            99999999999 875  8999975

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=4.6e-55  Score=408.51  Aligned_cols=254  Identities=23%  Similarity=0.305  Sum_probs=229.2

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      +..|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    ... .
T Consensus         4 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~-~   78 (258)
T 2pbp_A            4 FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD----DPI-R   78 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC----CHH-H
T ss_pred             cceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cch-h
Confidence            45688999999999999999999999999999999999999999999999999999999999999987532    111 1


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...+ .++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.
T Consensus        79 ~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  157 (258)
T 2pbp_A           79 LEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRAL  157 (258)
T ss_dssp             HHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHH
Confidence            2222223 567788999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      ++++||+.++|+||+++||||+|+|++++.+..                                               
T Consensus       158 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a-----------------------------------------------  190 (258)
T 2pbp_A          158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEET-----------------------------------------------  190 (258)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHH-----------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCcceeeChHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999987774322                                               


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                          .+++++|++.+|.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+++|
T Consensus       191 --------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af  247 (258)
T 2pbp_A          191 --------------------MRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFA---SEDQKEGMAAF  247 (258)
T ss_dssp             --------------------HHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                2358899999999999999999999888999999999999998887   99999999999


Q ss_pred             hcCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFH  364 (378)
Q Consensus       352 l~ek~r~P~~~~~  364 (378)
                      + +| |+|+|+++
T Consensus       248 ~-ek-r~p~~~~~  258 (258)
T 2pbp_A          248 L-EK-RKPRFQGK  258 (258)
T ss_dssp             H-TT-SCCCCCCC
T ss_pred             H-cc-CCCCCCCC
Confidence            9 88 89999863

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=2.4e-55  Score=414.19  Aligned_cols=263  Identities=22%  Similarity=0.315  Sum_probs=207.6

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..++.+.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..........
T Consensus         6 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   85 (276)
T 2j5i_A            6 GRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEI   85 (276)
T ss_dssp             TCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTT
T ss_pred             CCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhH
Confidence            34667999999999999999999999999999999999999999999999999999999999999999875322111111


Q ss_pred             HHHHHHHHHHHH-HHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          111 ECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       111 ~~~~~~~~~~~l-~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      ....+......+ +..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  165 (276)
T 2j5i_A           86 LQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHR  165 (276)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence            122222223343 6678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |++|++||+.++|+||+++||||+|+|++++.+.                                             
T Consensus       166 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~---------------------------------------------  200 (276)
T 2j5i_A          166 QSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREV---------------------------------------------  200 (276)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHH---------------------------------------------
T ss_pred             HHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHH---------------------------------------------
Confidence             9999999999999999999999999997766432                                             


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHc--cccCCCC-cHH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG--VSRLISG-DFY  345 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~--~~~~~~~-d~~  345 (378)
                                            +.+++++|++.||.+++.+|+++++....+++++++.|...+...  +.   ++ |++
T Consensus       201 ----------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~~d~~  255 (276)
T 2j5i_A          201 ----------------------TIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLD---TEGGRE  255 (276)
T ss_dssp             ----------------------HHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             ----------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC---ChHHHH
Confidence                                  223689999999999999999999998889999999888776554  43   78 999


Q ss_pred             hhHhhhhcCCC-CCCCCCCC
Q 017069          346 EGVRARMVDRD-IAPKVPFH  364 (378)
Q Consensus       346 egv~afl~ek~-r~P~~~~~  364 (378)
                      ||+++|+ +|+ |+|+|++.
T Consensus       256 eg~~AF~-ekr~r~p~~~~~  274 (276)
T 2j5i_A          256 QGMKQFL-DDKSIKPGLQAY  274 (276)
T ss_dssp             --------------------
T ss_pred             HHHHHHH-hcccCCCCcccC
Confidence            9999999 884 59999875

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=2.1e-56  Score=425.21  Aligned_cols=261  Identities=21%  Similarity=0.238  Sum_probs=185.1

Q ss_pred             CCCceEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHh--hccCC
Q 017069           32 LCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHF--MNQGK  108 (378)
Q Consensus        32 ~~~~v~~~~~~-~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~--~~~~~  108 (378)
                      .++.|.+++++ +|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++...  .....
T Consensus        27 ~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           27 AQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             -CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            46789999999 9999999999999999999999999999999999999999999999999999999987641  10100


Q ss_pred             h--HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcc
Q 017069          109 L--EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (378)
Q Consensus       109 ~--~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (378)
                      .  .....+....+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  186 (298)
T 3qre_A          107 AKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT  186 (298)
T ss_dssp             --------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc
Confidence            0  01112223345667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHH
Q 017069          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (378)
Q Consensus       187 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (378)
                      |.. |++|++||+.++|+||+++||||+|||++++.+...                                        
T Consensus       187 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------------  226 (298)
T 3qre_A          187 SWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRAL----------------------------------------  226 (298)
T ss_dssp             CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHH----------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999888753222                                        


Q ss_pred             hcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhc-CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcH
Q 017069          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (378)
Q Consensus       266 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  344 (378)
                                                 +++++|++. ||.+++.+|+++++....+++++++.|...+..++.   ++|+
T Consensus       227 ---------------------------~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~  276 (298)
T 3qre_A          227 ---------------------------EYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMP---RPDV  276 (298)
T ss_dssp             ---------------------------HHHHHHHHHSCHHHHHHHHHHHHGGGGC-------------------------
T ss_pred             ---------------------------HHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHH
Confidence                                       368899998 999999999999999999999999999998888887   9999


Q ss_pred             HhhHhhhhcCCCCCCCCCCC
Q 017069          345 YEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       345 ~egv~afl~ek~r~P~~~~~  364 (378)
                      +||+++|+ || |+|+|+++
T Consensus       277 ~Egv~AF~-ek-R~P~f~~~  294 (298)
T 3qre_A          277 IEGIVSFL-EK-RPPQFPSL  294 (298)
T ss_dssp             --------------------
T ss_pred             HHHHHHHH-cC-CCCCCCCC
Confidence            99999999 88 99999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.3e-56  Score=420.43  Aligned_cols=257  Identities=22%  Similarity=0.306  Sum_probs=229.4

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      .|++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......... 
T Consensus         4 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   82 (265)
T 3qxz_A            4 SMVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRN-   82 (265)
T ss_dssp             --CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCS-
T ss_pred             CccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHH-
Confidence            3577899999999999999999999999999999999999999999999999999999999999999987643111111 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                         .++.. +.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        83 ---~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (265)
T 3qxz_A           83 ---PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAV  158 (265)
T ss_dssp             ---SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHH
T ss_pred             ---HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence               11112 4566778999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||+.++|+||+++||||+|+|++++.+                                               
T Consensus       159 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~-----------------------------------------------  191 (265)
T 3qxz_A          159 AAELLLTGASFSAQRAVETGLANRCLPAGKVLG-----------------------------------------------  191 (265)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHH-----------------------------------------------
T ss_pred             HHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHH-----------------------------------------------
Confidence            999999999999999999999999999876643                                               


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhc-CchHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHccccCCCCcHHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDEC--LVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~--l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                          .+.+++++|+.. ||.+++.+|+++++....+++++  ++.|...+..++.   ++|++|
T Consensus       192 --------------------~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~---s~d~~e  248 (265)
T 3qxz_A          192 --------------------AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMG---SQDAAE  248 (265)
T ss_dssp             --------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT---STHHHH
T ss_pred             --------------------HHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhC---ChHHHH
Confidence                                222468999999 99999999999999888888888  9999999999987   999999


Q ss_pred             hHhhhhcCCCCCCCCCCC
Q 017069          347 GVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       347 gv~afl~ek~r~P~~~~~  364 (378)
                      |+++|+ +| |+|+|+++
T Consensus       249 gi~Af~-ek-r~P~f~g~  264 (265)
T 3qxz_A          249 GPRAFI-DG-RPPRWAGQ  264 (265)
T ss_dssp             HHHHHH-HT-SCCCCCCC
T ss_pred             HHHHHH-cC-CCCCCCCC
Confidence            999999 88 99999874

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.6e-56  Score=416.47  Aligned_cols=253  Identities=21%  Similarity=0.208  Sum_probs=206.8

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      .++..|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..........
T Consensus         8 ~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (262)
T 3r9q_A            8 EMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHP   87 (262)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCT
T ss_pred             ccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHH
Confidence            45667999999999999999999999999999999999999999999999999999999999999999876432111000


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                            .....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        88 ------~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  161 (262)
T 3r9q_A           88 ------HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSR  161 (262)
T ss_dssp             ------TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHH
T ss_pred             ------hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHH
Confidence                  0011233446689999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||+.++|+||+++||||+|+|++++.+...                                            
T Consensus       162 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  197 (262)
T 3r9q_A          162 AMDLILTGRPVHANEALDIGLVNRVVARGQAREAAE--------------------------------------------  197 (262)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999998854222                                            


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                             +++++|++.||.+++.+|+++++....+++++++.|.+ +..++.   + |++||++
T Consensus       198 -----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~---s-d~~Eg~~  249 (262)
T 3r9q_A          198 -----------------------TLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVA---T-EALEGAG  249 (262)
T ss_dssp             -----------------------HHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHH---C--------
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhc---c-HHHHHHH
Confidence                                   36899999999999999999999999999999999999 888876   7 9999999


Q ss_pred             hhhcCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPF  363 (378)
Q Consensus       350 afl~ek~r~P~~~~  363 (378)
                      +|+ || |+|.|++
T Consensus       250 AF~-ek-r~p~~~~  261 (262)
T 3r9q_A          250 RFA-AG-EGRHGAG  261 (262)
T ss_dssp             --------------
T ss_pred             HHH-cC-CCCCCCC
Confidence            999 88 9999975

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.8e-55  Score=410.54  Aligned_cols=251  Identities=21%  Similarity=0.288  Sum_probs=226.4

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....   ....
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~   81 (256)
T 3trr_A            5 MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGE---AVLS   81 (256)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTC---CCEE
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhcccc---chhh
Confidence            4567999999999999999999999999999999999999999999999999999999999999999987531   1110


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+     .+ ..+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        82 ~~~~-----~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           82 ERGL-----GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TTEE-----TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hhhh-----hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            0001     11 234 89999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|||++++.+..                                              
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a----------------------------------------------  188 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTA----------------------------------------------  188 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHH----------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998875322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .+++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|++||+++
T Consensus       189 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  244 (256)
T 3trr_A          189 ---------------------LELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFV---SEDAKEGAKA  244 (256)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                 2368999999999999999999999999999999999999999987   9999999999


Q ss_pred             hhcCCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPFH  364 (378)
Q Consensus       351 fl~ek~r~P~~~~~  364 (378)
                      |+ +| |+|+|+++
T Consensus       245 f~-ek-r~p~f~g~  256 (256)
T 3trr_A          245 FA-EK-RAPVWQGK  256 (256)
T ss_dssp             HH-TT-SCCCCCCC
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 88 99999874

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.8e-55  Score=412.87  Aligned_cols=256  Identities=17%  Similarity=0.191  Sum_probs=231.7

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      .+..+.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|+.||+|+|++++...   ...+.
T Consensus        31 ~~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~~~  107 (287)
T 2vx2_A           31 EPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEE---QGRDY  107 (287)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGG---GCHHH
T ss_pred             CCcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcc---cchhH
Confidence            446789999999999999999999999999999999999999999999999999999999999999887532   12233


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|.. |
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A  186 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVA  186 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHH
Confidence            344556677888999999999999999999999999999999999999999999999999999999999 99999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|||++++.+...                                             
T Consensus       187 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  221 (287)
T 2vx2_A          187 LEMLFTGEPISAQEALLHGLLSKVVPEAELQEETM---------------------------------------------  221 (287)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877743222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++|++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||+++
T Consensus       222 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~a  276 (287)
T 2vx2_A          222 ----------------------RIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLA---LRDGQEGITA  276 (287)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  358899999999999999999998888999999999999998887   9999999999


Q ss_pred             hhcCCCCCCCCCC
Q 017069          351 RMVDRDIAPKVPF  363 (378)
Q Consensus       351 fl~ek~r~P~~~~  363 (378)
                      |+ +| |+|+|++
T Consensus       277 f~-ek-r~p~f~g  287 (287)
T 2vx2_A          277 FL-QK-RKPVWSH  287 (287)
T ss_dssp             HH-TT-SCCCCCC
T ss_pred             HH-cC-CCCCCCC
Confidence            99 88 9999974

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.5e-55  Score=413.03  Aligned_cols=253  Identities=23%  Similarity=0.299  Sum_probs=219.6

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..+++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....  ..
T Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~   88 (265)
T 3qxi_A           11 GDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGEN--VV   88 (265)
T ss_dssp             ----CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CC--CE
T ss_pred             CCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccch--hh
Confidence            3567889999999999999999999999999999999999999999999999999999999999999998764311  10


Q ss_pred             HHHHHHHHHHHHH-HHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          110 EECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       110 ~~~~~~~~~~~~l-~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ...       ..+ +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        89 ~~~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  160 (265)
T 3qxi_A           89 VEG-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPY  160 (265)
T ss_dssp             ETT-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCH
T ss_pred             hhh-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCH
Confidence            000       011 223334 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +.+|++||+.++|+||+++||||+|||++++.+..                                           
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a-------------------------------------------  197 (265)
T 3qxi_A          161 AIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAA-------------------------------------------  197 (265)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHH-------------------------------------------
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHH-------------------------------------------
Confidence            9 99999999999999999999999999998885322                                           


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              .+++++|++.+|.+++.+|+++++....+++++++.|...+..++.   ++|++||
T Consensus       198 ------------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg  250 (265)
T 3qxi_A          198 ------------------------IALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFT---SNDAKEG  250 (265)
T ss_dssp             ------------------------HHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHH---CHHHHHH
T ss_pred             ------------------------HHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                    2368999999999999999999999988999999999999999988   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +++|+ +| |+|+|+++
T Consensus       251 ~~af~-ek-r~p~f~g~  265 (265)
T 3qxi_A          251 AIAFA-EK-RPPRWTGT  265 (265)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHH-cC-CCCCCCCC
Confidence            99999 88 99999874

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=4.9e-55  Score=409.04  Aligned_cols=256  Identities=19%  Similarity=0.249  Sum_probs=227.7

Q ss_pred             CCceEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.|.++.+++|++|||| ||++.|+||.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (261)
T 2gtr_A            4 YRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE   82 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHH
T ss_pred             cceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhH
Confidence            567899999999999999 699999999999999999999999887 499999999999999999998764321111122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  162 (261)
T 2gtr_A           83 STKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASA  162 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHH
Confidence            334445567888899999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|+|++++.+...                                             
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  197 (261)
T 2gtr_A          163 NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM---------------------------------------------  197 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887743222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++||+++
T Consensus       198 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  252 (261)
T 2gtr_A          198 ----------------------VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWG---SAQGMDSMLK  252 (261)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH---STTTTHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  358899999999999999999988777899999999999988887   9999999999


Q ss_pred             hhcCCCCCCCC
Q 017069          351 RMVDRDIAPKV  361 (378)
Q Consensus       351 fl~ek~r~P~~  361 (378)
                      |+ +| |+|+|
T Consensus       253 f~-ek-r~P~f  261 (261)
T 2gtr_A          253 YL-QR-KIDEF  261 (261)
T ss_dssp             HH-HH-HHHC-
T ss_pred             HH-cc-CCCCC
Confidence            99 88 89998

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.1e-54  Score=408.00  Aligned_cols=257  Identities=22%  Similarity=0.228  Sum_probs=224.4

Q ss_pred             CCCceEEE----eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC
Q 017069           32 LCNQVLVE----GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG  107 (378)
Q Consensus        32 ~~~~v~~~----~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~  107 (378)
                      +.+.+.++    .+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......
T Consensus         5 m~~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   84 (267)
T 3oc7_A            5 MDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPS   84 (267)
T ss_dssp             CCSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------
T ss_pred             cccccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCch
Confidence            34578888    89999999999999999999999999999999999999999999999999999999999876211111


Q ss_pred             Ch-HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcc
Q 017069          108 KL-EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (378)
Q Consensus       108 ~~-~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (378)
                      .. .....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~v  163 (267)
T 3oc7_A           85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KL  163 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TS
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-Hh
Confidence            11 11234566778899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHH
Q 017069          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (378)
Q Consensus       187 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (378)
                      |.. +.++++||+.++|+||+++||||+|  ++++++.                                          
T Consensus       164 G~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~------------------------------------------  199 (267)
T 3oc7_A          164 SARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAA------------------------------------------  199 (267)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHH------------------------------------------
T ss_pred             CHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHH------------------------------------------
Confidence            998 9999999999999999999999999  5666432                                          


Q ss_pred             hcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHH
Q 017069          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (378)
Q Consensus       266 ~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  345 (378)
                                               +.+++++|++.||.+++.+|+++++....+++++++.|...+..++.   ++|++
T Consensus       200 -------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  251 (267)
T 3oc7_A          200 -------------------------IDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFV---SDEAR  251 (267)
T ss_dssp             -------------------------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             -------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                     22468999999999999999999999888899999999999999987   99999


Q ss_pred             hhHhhhhcCCCCCCCCCC
Q 017069          346 EGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       346 egv~afl~ek~r~P~~~~  363 (378)
                      ||+++|+ +| |+|+|+.
T Consensus       252 eg~~af~-ek-r~p~f~~  267 (267)
T 3oc7_A          252 EGMLAFL-EK-RSPNWTS  267 (267)
T ss_dssp             HHHHHHH-HT-CCCTTC-
T ss_pred             HHHHHHH-cC-CCCCCCC
Confidence            9999999 88 9999973

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=4.1e-55  Score=411.64  Aligned_cols=256  Identities=20%  Similarity=0.288  Sum_probs=222.3

Q ss_pred             cCCCceEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           31 DLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        31 ~~~~~v~~~~~~-~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..++.|.+++++ +|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....  ..
T Consensus        10 ~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~   86 (272)
T 3qk8_A           10 QDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIG--DY   86 (272)
T ss_dssp             GGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHH--CH
T ss_pred             CCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhcccc--ch
Confidence            457789999986 89999999999 999999999999999999999999999999999999999999999865321  22


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .....++..++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  166 (272)
T 3qk8_A           87 EGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMA  166 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence            33345566778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |++|++||+.++|+||+++||||+|||++++.+..                                            
T Consensus       167 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a--------------------------------------------  202 (272)
T 3qk8_A          167 KAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTA--------------------------------------------  202 (272)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHH--------------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHH--------------------------------------------
Confidence             99999999999999999999999999988775322                                            


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHccccCCCCcHH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFY  345 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~~~d~~  345 (378)
                                             .+++++|+..+|.+++.+|++++....   ..+++.++.|    ..++.   ++|++
T Consensus       203 -----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~---s~d~~  252 (272)
T 3qk8_A          203 -----------------------TRLAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFT---GPDVQ  252 (272)
T ss_dssp             -----------------------HHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTT---SSHHH
T ss_pred             -----------------------HHHHHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhC---CHHHH
Confidence                                   236899999999999999999997654   2344444444    34555   99999


Q ss_pred             hhHhhhhcCCCCCCCCCCCC
Q 017069          346 EGVRARMVDRDIAPKVPFHL  365 (378)
Q Consensus       346 egv~afl~ek~r~P~~~~~~  365 (378)
                      ||+++|+ || |+|+|++++
T Consensus       253 eg~~Af~-ek-R~p~f~g~~  270 (272)
T 3qk8_A          253 EGLAAHR-QK-RPARFTDRT  270 (272)
T ss_dssp             HHHHHHH-TT-SCCCC----
T ss_pred             HHHHHHH-cC-CCCCCCCCC
Confidence            9999999 98 999999763

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-54  Score=407.47  Aligned_cols=255  Identities=16%  Similarity=0.201  Sum_probs=218.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++........  ..
T Consensus         6 ~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~   82 (267)
T 3hp0_A            6 YQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGR--KQ   82 (267)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTC--CS
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChH--HH
Confidence            46799999999999999999999999999999999999999986 5999999999999999999999875321111  11


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. |+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~  161 (267)
T 3hp0_A           83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH  161 (267)
T ss_dssp             CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence            12234556788889999999999999999999999999999999999999999999999999875 67899999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +|++||+.++|+||+++||||+|+|+.+..  ..                                              
T Consensus       162 ellltg~~i~A~eA~~~GLV~~vv~~~~~~--~~----------------------------------------------  193 (267)
T 3hp0_A          162 YMTLMTKPISVQEASEWGLIDAFDAESDVL--LR----------------------------------------------  193 (267)
T ss_dssp             HHHHHCCCBCHHHHHHHTSSSCBCSCTTHH--HH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCcceecCCHHHH--HH----------------------------------------------
Confidence            999999999999999999999999865421  11                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhh
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRAR  351 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~af  351 (378)
                                           +++++|++.||.+++.+|++++... ..+.+.++.|.+.+..++.   ++|++||+++|
T Consensus       194 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~---s~d~~Eg~~AF  248 (267)
T 3hp0_A          194 ---------------------KHLLRLRRLNKKGIAHYKQFMSSLD-HQVSRAKATALTANQDMFS---DPQNQMGIIRY  248 (267)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTT---STTHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 2578999999999999999999864 4577888888888888887   99999999999


Q ss_pred             hcCCCCCCCCCCCCC
Q 017069          352 MVDRDIAPKVPFHLS  366 (378)
Q Consensus       352 l~ek~r~P~~~~~~~  366 (378)
                      + || |+|+|++...
T Consensus       249 ~-ek-r~P~~~~~~~  261 (267)
T 3hp0_A          249 V-ET-GQFPWEDQEG  261 (267)
T ss_dssp             T-TS-CCC-------
T ss_pred             H-hc-CCCCCCCCCc
Confidence            9 98 9999998644

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=3.6e-54  Score=401.47  Aligned_cols=251  Identities=25%  Similarity=0.310  Sum_probs=225.0

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ........
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTEL-GAEENYRH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTS-CHHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccC-CchhHHHH
Confidence            5678 899999999999999999999999999999999999999999999999999999999987643100 11111111


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. +.+++
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~  158 (253)
T 1uiy_A           80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence            11267788899999999999999999999999999999999999999999999999999999 99999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||+.++|+||+++||||+|+|++++.+...                                                 
T Consensus       159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  189 (253)
T 1uiy_A          159 LTGRLVEAREAKALGLVNRIAPPGKALEEAK-------------------------------------------------  189 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHH-------------------------------------------------
T ss_pred             HhCCccCHHHHHHCCCcceecChhHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999988753222                                                 


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                        +++++|++.+|.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+++|+ +
T Consensus       190 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~-~  247 (253)
T 1uiy_A          190 ------------------ALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFF-E  247 (253)
T ss_dssp             ------------------HHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHH-T
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh-C
Confidence                              358899999999999999999999888999999999999999887   999999999999 8


Q ss_pred             CCCCCCC
Q 017069          355 RDIAPKV  361 (378)
Q Consensus       355 k~r~P~~  361 (378)
                      | |+|+|
T Consensus       248 k-r~p~~  253 (253)
T 1uiy_A          248 K-RPPRF  253 (253)
T ss_dssp             T-SCCCC
T ss_pred             c-CCCCC
Confidence            8 89998

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=3.1e-55  Score=411.40  Aligned_cols=255  Identities=24%  Similarity=0.322  Sum_probs=225.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...........
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   87 (267)
T 3r9t_A            8 APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDH   87 (267)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTC
T ss_pred             CCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHH
Confidence            45799999999999999999999999999999999999999999999999999999 59999999999865321111100


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       ..+   ....+ ...++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        88 -~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  162 (267)
T 3r9t_A           88 -PEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVA  162 (267)
T ss_dssp             -GGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHH
T ss_pred             -HhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHH
Confidence             000   00111 12489999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|+|++++.+..                                              
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a----------------------------------------------  196 (267)
T 3r9t_A          163 MRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAA----------------------------------------------  196 (267)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHH----------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999885322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRS---IREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~---l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                           .+++++|++.||.+++.+|++   ++.....+++++++.|...+..++.   ++|++||
T Consensus       197 ---------------------~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg  252 (267)
T 3r9t_A          197 ---------------------LALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLK---SEDAKEG  252 (267)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTT---SSHHHHH
T ss_pred             ---------------------HHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                 236899999999999999999   8888888899999999999999887   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +++|+ +| |+|+|+++
T Consensus       253 ~~AF~-ek-R~P~f~g~  267 (267)
T 3r9t_A          253 PRAFA-EK-REPVWQAR  267 (267)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHH-cC-CCCCCCCC
Confidence            99999 88 99999864

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.3e-54  Score=405.03  Aligned_cols=254  Identities=18%  Similarity=0.223  Sum_probs=228.5

Q ss_pred             CCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      ++.+.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++ +..... ...+.
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~-~~~~~   85 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR-ASHEA   85 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH-HCHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc-cchHH
Confidence            45688999 9999999999999 99999999999999999999999999999999999999999999 754211 01122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  165 (264)
T 1wz8_A           86 LLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKA  165 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            233455677888999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      ++|++||+.++|+||+++||||+|+|++++.+..                                              
T Consensus       166 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a----------------------------------------------  199 (264)
T 1wz8_A          166 KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKA----------------------------------------------  199 (264)
T ss_dssp             HHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHH----------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCceeecChhHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988774322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .+++++|++.+|.+++.+|++++..... ++++++.|.+.+..++.   ++|++||+++
T Consensus       200 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~---s~d~~eg~~a  254 (264)
T 1wz8_A          200 ---------------------LEVAERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFS---GKELEEGLKA  254 (264)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGG---SHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                 2358899999999999999999998888 99999999999998887   9999999999


Q ss_pred             hhcCCCCCCCCC
Q 017069          351 RMVDRDIAPKVP  362 (378)
Q Consensus       351 fl~ek~r~P~~~  362 (378)
                      |+ +| |+|+|+
T Consensus       255 f~-ek-r~p~f~  264 (264)
T 1wz8_A          255 LK-EK-RPPEFP  264 (264)
T ss_dssp             HH-TT-SCCCCC
T ss_pred             HH-cc-CCCCCC
Confidence            99 88 999995

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.5e-54  Score=405.43  Aligned_cols=254  Identities=24%  Similarity=0.346  Sum_probs=226.5

Q ss_pred             CCceEEEe---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           33 CNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        33 ~~~v~~~~---~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ++.+.++.   .++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    ..
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~   78 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----TF   78 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----CH
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc----cc
Confidence            55677887   789999999999999999999999999999999999999999999999999999999986421    11


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .  ..+...+...+.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        79 ~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  156 (260)
T 1mj3_A           79 Q--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKS  156 (260)
T ss_dssp             H--HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHH
T ss_pred             h--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence            1  11222223345678899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       +.+|++||+.++|+||+++||||+|+|++++.+.                                             
T Consensus       157 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~---------------------------------------------  191 (260)
T 1mj3_A          157 LAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEE---------------------------------------------  191 (260)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHH---------------------------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHH---------------------------------------------
Confidence             9999999999999999999999999999887532                                             


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                                            +.+++++|+..+|.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+
T Consensus       192 ----------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi  246 (260)
T 1mj3_A          192 ----------------------AIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREGM  246 (260)
T ss_dssp             ----------------------HHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHHH
T ss_pred             ----------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence                                  22368899999999999999999999888999999999999999887   99999999


Q ss_pred             hhhhcCCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPFH  364 (378)
Q Consensus       349 ~afl~ek~r~P~~~~~  364 (378)
                      ++|+ +| |+|+|+++
T Consensus       247 ~af~-~k-r~p~~~g~  260 (260)
T 1mj3_A          247 SAFV-EK-RKANFKDH  260 (260)
T ss_dssp             HHHH-TT-SCCCCCCC
T ss_pred             HHHH-cC-CCCCCCCC
Confidence            9999 88 99999863

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1e-54  Score=409.44  Aligned_cols=261  Identities=18%  Similarity=0.201  Sum_probs=220.5

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-----CC-CCcccCCChhhHHHhhc
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-----SG-RAFCAGGDIVSLYHFMN  105 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g-----~g-~~F~~G~Dl~~~~~~~~  105 (378)
                      .++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||     .| ++||+|+|++++.... 
T Consensus         8 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~-   86 (275)
T 4eml_A            8 HYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG-   86 (275)
T ss_dssp             ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc-
Confidence            3677999999999999999999999999999999999999999999999999999     88 5999999999875311 


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhc
Q 017069          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                        ...........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        87 --~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~  164 (275)
T 4eml_A           87 --YIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI  164 (275)
T ss_dssp             ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred             --ccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence              000001111124567888999999999999999999999999999999999999999999999999988889999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      +|.. |++|++||+.++|+||+++||||+|+|++++.+..                                        
T Consensus       165 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a----------------------------------------  204 (275)
T 4eml_A          165 VGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEG----------------------------------------  204 (275)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHH----------------------------------------
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHH----------------------------------------
Confidence            9999 99999999999999999999999999998875322                                        


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcH
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  344 (378)
                                                 .+++++|++.||.+++.+|++++.... ......+.|.+.+..++.   ++|+
T Consensus       205 ---------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~---s~d~  253 (275)
T 4eml_A          205 ---------------------------IQWAKEILSKSPLAIRCLKAAFNADCD-GQAGLQELAGNATLLYYM---TEEG  253 (275)
T ss_dssp             ---------------------------HHHHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT---SHHH
T ss_pred             ---------------------------HHHHHHHHhCCHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhc---CHHH
Confidence                                       236899999999999999999998754 234444566666666676   9999


Q ss_pred             HhhHhhhhcCCCCCCCCCCCCCCC
Q 017069          345 YEGVRARMVDRDIAPKVPFHLSLP  368 (378)
Q Consensus       345 ~egv~afl~ek~r~P~~~~~~~~~  368 (378)
                      +||+++|+ || |+|+|++...+|
T Consensus       254 ~eg~~AF~-ek-R~p~f~~~~~~~  275 (275)
T 4eml_A          254 SEGKQAFL-EK-RPPDFSQYPWLP  275 (275)
T ss_dssp             HHHHHHHH-TT-SCCCCTTCCCCC
T ss_pred             HHHHHHHH-cC-CCCCCCCCCCCC
Confidence            99999999 98 999999875543

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=2.9e-54  Score=405.90  Aligned_cols=252  Identities=21%  Similarity=0.270  Sum_probs=227.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    .......+...+
T Consensus        19 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   94 (272)
T 1hzd_A           19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----SSSEVGPFVSKI   94 (272)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----CHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc----ChHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999998 799999999987531    223334455667


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCC
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (378)
                      +.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.+|++||+
T Consensus        95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~  174 (272)
T 1hzd_A           95 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  174 (272)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence            7888999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHHH
Q 017069          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (378)
Q Consensus       199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~  278 (378)
                      .++|+||+++||||+|+|++++.+...                                                     
T Consensus       175 ~~~a~eA~~~GLv~~vv~~~~l~~~~~-----------------------------------------------------  201 (272)
T 1hzd_A          175 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  201 (272)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             cCCHHHHHHCCCcceecChhhhhHHHH-----------------------------------------------------
Confidence            999999999999999999988742110                                                     


Q ss_pred             HHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCCCCC
Q 017069          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIA  358 (378)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek~r~  358 (378)
                                +++.+++++|+..||.+++.+|++++.+...+++++++.|...+..++.   ++|++||+++|+ +| |+
T Consensus       202 ----------~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af~-ek-r~  266 (272)
T 1hzd_A          202 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFK-EK-RP  266 (272)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHT-TT-SC
T ss_pred             ----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-cC-CC
Confidence                      1233468889999999999999999999888999999999999988887   999999999999 88 99


Q ss_pred             CCCCCC
Q 017069          359 PKVPFH  364 (378)
Q Consensus       359 P~~~~~  364 (378)
                      |+|+++
T Consensus       267 p~~~g~  272 (272)
T 1hzd_A          267 PRYKGE  272 (272)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999864

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.8e-54  Score=410.14  Aligned_cols=260  Identities=17%  Similarity=0.220  Sum_probs=219.4

Q ss_pred             cCCCceEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC
Q 017069           31 DLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        31 ~~~~~v~~~~~-~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      ..++.|.++.+ ++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....  ..
T Consensus        24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~--~~  101 (289)
T 3t89_A           24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYG--GY  101 (289)
T ss_dssp             TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred             CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccc--cc
Confidence            45678999999 99999999999999999999999999999999999999999999999 5999999999875321  01


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      .+........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~  181 (289)
T 3t89_A          102 KDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ  181 (289)
T ss_dssp             --------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred             hhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence            11111122235678888999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . |++|++||+.++|+||+++||||+|+|++++.+..                                           
T Consensus       182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a-------------------------------------------  218 (289)
T 3t89_A          182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKET-------------------------------------------  218 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHH-------------------------------------------
T ss_pred             HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHH-------------------------------------------
Confidence            9 99999999999999999999999999988875322                                           


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              .+++++|+..+|.+++.+|++++.... ......+.|.+.+..++.   ++|++||
T Consensus       219 ------------------------~~~A~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---s~d~~Eg  270 (289)
T 3t89_A          219 ------------------------VRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEGQEG  270 (289)
T ss_dssp             ------------------------HHHHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTT---SSTTTHH
T ss_pred             ------------------------HHHHHHHHcCCHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                    236899999999999999999998754 233444566666666666   9999999


Q ss_pred             HhhhhcCCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFHL  365 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~~  365 (378)
                      +++|+ || |+|+|++..
T Consensus       271 ~~AF~-ek-R~P~f~~~~  286 (289)
T 3t89_A          271 RNAFN-QK-RQPDFSKFK  286 (289)
T ss_dssp             HHHHH-TT-SCCCCTTSC
T ss_pred             HHHHh-cC-CCCCCCCCC
Confidence            99999 98 999999763

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=6e-54  Score=404.19  Aligned_cols=250  Identities=21%  Similarity=0.287  Sum_probs=228.5

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ++.+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....  .+..
T Consensus        25 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~  102 (276)
T 3rrv_A           25 DMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELS--ADAD  102 (276)
T ss_dssp             CCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHH--HCHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcc--cchH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999986532  1233


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  182 (276)
T 3rrv_A          103 LRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLL  182 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHH
Confidence            4455666778899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |+++++||+.++|+||+++||||+|+  +++.+.                                              
T Consensus       183 A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~----------------------------------------------  214 (276)
T 3rrv_A          183 AKEYALTGTRISAQRAVELGLANHVA--DDPVAE----------------------------------------------  214 (276)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHH----------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHH----------------------------------------------
Confidence            99999999999999999999999999  666432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|++.||.+++.+|+++++....+++++++.|...+..++.   ++|++||++
T Consensus       215 ---------------------a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  270 (276)
T 3rrv_A          215 ---------------------AIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFV---TEDFRSIVT  270 (276)
T ss_dssp             ---------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                 22368999999999999999999998888899999999999988887   999999999


Q ss_pred             hhhcCC
Q 017069          350 ARMVDR  355 (378)
Q Consensus       350 afl~ek  355 (378)
                      +|+ ||
T Consensus       271 AF~-ek  275 (276)
T 3rrv_A          271 KLA-DK  275 (276)
T ss_dssp             HHH-CC
T ss_pred             HHH-cC
Confidence            999 87

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=8e-55  Score=406.48  Aligned_cols=251  Identities=21%  Similarity=0.275  Sum_probs=189.6

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +.+..|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......... 
T Consensus         3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   81 (256)
T 3qmj_A            3 GSMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF-   81 (256)
T ss_dssp             ---CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC-
T ss_pred             CCcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH-
Confidence            3467799999999999999999999999999999999999999999999999999999999999999998654222110 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        82 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  159 (256)
T 3qmj_A           82 --SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQN  159 (256)
T ss_dssp             --CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence              11123456778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||+.++|+||+++||||+|+|++++.+..                                             
T Consensus       160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------  194 (256)
T 3qmj_A          160 AAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEA---------------------------------------------  194 (256)
T ss_dssp             HHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHH---------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988775322                                             


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .+++++|++.||.+++.+|+++++....+++++++.|...+..++.   ++|++||++
T Consensus       195 ----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  249 (256)
T 3qmj_A          195 ----------------------RRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMG---AQANAAALA  249 (256)
T ss_dssp             ----------------------HHHHHHHHTSCHHHHHHHHHHHHCC---------------------------------
T ss_pred             ----------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                  2368999999999999999999998888999999999999998887   999999999


Q ss_pred             hhhcCC
Q 017069          350 ARMVDR  355 (378)
Q Consensus       350 afl~ek  355 (378)
                      +|+ +|
T Consensus       250 af~-ek  254 (256)
T 3qmj_A          250 DFT-DR  254 (256)
T ss_dssp             ------
T ss_pred             HHH-cc
Confidence            999 87

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.9e-55  Score=407.11  Aligned_cols=254  Identities=22%  Similarity=0.296  Sum_probs=215.1

Q ss_pred             cCCCCccccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHH
Q 017069           23 RTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH  102 (378)
Q Consensus        23 ~~~~~~~~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~  102 (378)
                      .++-++.+..+..|.++.+++|++||||||++.|+||.+|+.+|.++++.++.| ++++|||||.|++||+|+|++... 
T Consensus        10 ~~~~~~~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~-   87 (264)
T 3he2_A           10 GTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA-   87 (264)
T ss_dssp             ------------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT-
T ss_pred             cccccccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch-
Confidence            344556677888999999999999999999999999999999999999999988 999999999999999999998311 


Q ss_pred             hhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHH
Q 017069          103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL  182 (378)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  182 (378)
                           ..   ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        88 -----~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L  159 (264)
T 3he2_A           88 -----FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRL  159 (264)
T ss_dssp             -----TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHH
T ss_pred             -----hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHH
Confidence                 11   1234456778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHH
Q 017069          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (378)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (378)
                      ++++|.. |++|++||+.++|+||+++||||+|++   ++   ++                                   
T Consensus       160 ~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~---~~---~a-----------------------------------  198 (264)
T 3he2_A          160 SSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT---LA---DA-----------------------------------  198 (264)
T ss_dssp             HHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC---HH---HH-----------------------------------
T ss_pred             HHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec---HH---HH-----------------------------------
Confidence            9999999 999999999999999999999999986   21   21                                   


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCC
Q 017069          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (378)
Q Consensus       262 ~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  341 (378)
                                                    .+++++|++.||.+++.+|++++...  ++++.++.|.+.+..++.   +
T Consensus       199 ------------------------------~~~A~~la~~~p~a~~~~K~~l~~~~--~~~~~~~~e~~~~~~~~~---s  243 (264)
T 3he2_A          199 ------------------------------QAWAAEIARLAPLAIQHAKRVLNDDG--AIEEAWPAHKELFDKAWG---S  243 (264)
T ss_dssp             ------------------------------HHHHHHHHTSCHHHHHHHHHHHHTSS--CSCCCCHHHHHHHHHHHT---S
T ss_pred             ------------------------------HHHHHHHHcCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhC---C
Confidence                                          13588999999999999999999863  456677788888888887   9


Q ss_pred             CcHHhhHhhhhcCCCCCCCCCCC
Q 017069          342 GDFYEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       342 ~d~~egv~afl~ek~r~P~~~~~  364 (378)
                      +|++||+++|+ || |+|+|+++
T Consensus       244 ~d~~Eg~~AF~-ek-R~P~f~g~  264 (264)
T 3he2_A          244 QDVIEAQVARM-EK-RPPKFQGA  264 (264)
T ss_dssp             HHHHHHHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHHHHHHh-cC-CCCCCCCC
Confidence            99999999999 98 99999864

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.3e-54  Score=404.72  Aligned_cols=256  Identities=21%  Similarity=0.264  Sum_probs=215.1

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ...++.+.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++ +|||||.|+.||+|+|++++..... ...
T Consensus        22 ~~~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~   99 (280)
T 2f6q_A           22 SMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPP-GGV   99 (280)
T ss_dssp             EEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCT-THH
T ss_pred             cCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCc-chh
Confidence            44577899999999999999999999999999999999999999999999 9999999999999999998753210 111


Q ss_pred             HH-HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          110 EE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       110 ~~-~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      .. ...+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  179 (280)
T 2f6q_A          100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence            11 12234456778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . |+++++||+.++|+||+++||||+|+|++++.+...                                          
T Consensus       180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  217 (280)
T 2f6q_A          180 AKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW------------------------------------------  217 (280)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHH------------------------------------------
Confidence            8 999999999999999999999999999988753222                                          


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                               +++++|++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||
T Consensus       218 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg  269 (280)
T 2f6q_A          218 -------------------------TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECTNA  269 (280)
T ss_dssp             -------------------------HHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHHC-
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     358899999999999999999988777889999999999998887   9999999


Q ss_pred             HhhhhcCCCCCC
Q 017069          348 VRARMVDRDIAP  359 (378)
Q Consensus       348 v~afl~ek~r~P  359 (378)
                      +++|+ +| |+|
T Consensus       270 ~~af~-ek-R~p  279 (280)
T 2f6q_A          270 VVNFL-SR-KSK  279 (280)
T ss_dssp             ------------
T ss_pred             HHHHH-cc-CCC
Confidence            99999 88 776

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=4.3e-54  Score=404.96  Aligned_cols=257  Identities=19%  Similarity=0.231  Sum_probs=222.1

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCChhhHHHhhccCCh
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+ +||+|+|++++...... ..
T Consensus        10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~-~~   88 (273)
T 2uzf_A           10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYV-GE   88 (273)
T ss_dssp             BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CC
T ss_pred             CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccc-hh
Confidence            45677999999999999999999999999999999999999999999999999999998 99999999987531100 00


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      ....  ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        89 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  166 (273)
T 2uzf_A           89 DQIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK  166 (273)
T ss_dssp             SSSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred             hhHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence            0000  00134566788899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |+++++||+.++|+||+++||||+|+|++++.+...                                           
T Consensus       167 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------  203 (273)
T 2uzf_A          167 KAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETV-------------------------------------------  203 (273)
T ss_dssp             HHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHH-------------------------------------------
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999887753222                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHccccCCCCcHHhh
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY-RMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~-~~~~~~~~~~~~~d~~eg  347 (378)
                                              +++++|++.+|.+++.+|++++.  ..++.++++.|. +.+..++.   ++|++||
T Consensus       204 ------------------------~~a~~la~~~~~a~~~~K~~l~~--~~~~~~~l~~e~~~~~~~~~~---s~d~~eg  254 (273)
T 2uzf_A          204 ------------------------QWCKEIMKHSPTALRFLKAAMNA--DTDGLAGLQQMAGDATLLYYT---TDEAKEG  254 (273)
T ss_dssp             ------------------------HHHHHHTTSCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhc---ChHHHHH
Confidence                                    35889999999999999999983  346889999998 88888876   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +++|+ +| |+|+|+++
T Consensus       255 i~af~-ek-r~p~f~~~  269 (273)
T 2uzf_A          255 RDAFK-EK-RDPDFDQF  269 (273)
T ss_dssp             HHHHH-TT-SCCCCSSS
T ss_pred             HHHHH-hc-CCCCCCCC
Confidence            99999 88 99999876

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=9.4e-55  Score=407.11  Aligned_cols=254  Identities=19%  Similarity=0.215  Sum_probs=226.1

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CC-CCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SG-RAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g-~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      |+.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+ +++||||| .| ++||+|+|++++...... .. 
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~-~~-   79 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRD-PL-   79 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----C-TT-
T ss_pred             cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCch-hH-
Confidence            567999999999999999999999999999999999999999999 99999999 99 999999999987542111 10 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                         .+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  156 (261)
T 1ef8_A           80 ---SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             ---CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence               1122356778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.++++||+.++|+||+++||||+|+|++++.+.                                              
T Consensus       157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~----------------------------------------------  190 (261)
T 1ef8_A          157 VKELIFTASPITAQRALAVGILNHVVEVEELEDF----------------------------------------------  190 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHH----------------------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHCCCcccccCHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999997665421                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HccccCCCCcHHhh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL--QGVSRLISGDFYEG  347 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~--~~~~~~~~~d~~eg  347 (378)
                                           +.+++++|++.||.+++.+|++++.....+++++++.|.+.+.  .++.   ++|++||
T Consensus       191 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~d~~eg  246 (261)
T 1ef8_A          191 ---------------------TLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             ---------------------HHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhc---CHHHHHH
Confidence                                 2236889999999999999999999888888999999999988  8886   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      +++|+ +| |+|+|+++
T Consensus       247 ~~af~-ek-r~p~~~~~  261 (261)
T 1ef8_A          247 MNAFL-EK-RKPNFVGH  261 (261)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHH-cc-CCCCCCCC
Confidence            99999 88 99999864

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1.5e-54  Score=403.97  Aligned_cols=249  Identities=21%  Similarity=0.258  Sum_probs=204.1

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      .++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...        
T Consensus         7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~--------   78 (256)
T 3pe8_A            7 DSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT--------   78 (256)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred             CCCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh--------
Confidence            356799999999999999999999999999999999999999999999999999999999999999987532        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                           ..+..+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 -----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  153 (256)
T 3pe8_A           79 -----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLA  153 (256)
T ss_dssp             -----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHH
T ss_pred             -----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHH
Confidence                 1122334667899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|++||+.++|+||+++||||+|+|++++.+...                                             
T Consensus       154 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  188 (256)
T 3pe8_A          154 RRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAAR---------------------------------------------  188 (256)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888753222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++|++.+|.+++.+|++++.....+++++++.|.+.+...+....++|++|++++
T Consensus       189 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~a  246 (256)
T 3pe8_A          189 ----------------------RVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRAS  246 (256)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence                                  3689999999999999999999998889999999999998777655568999999999


Q ss_pred             hhcCCCCCCCCC
Q 017069          351 RMVDRDIAPKVP  362 (378)
Q Consensus       351 fl~ek~r~P~~~  362 (378)
                      |+ +| ++|.|.
T Consensus       247 fl-ek-~k~~~~  256 (256)
T 3pe8_A          247 VI-ER-GRSQVR  256 (256)
T ss_dssp             ------------
T ss_pred             HH-hc-cCccCC
Confidence            99 88 899994

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=2.5e-54  Score=415.93  Aligned_cols=261  Identities=16%  Similarity=0.183  Sum_probs=190.3

Q ss_pred             CCCceEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-------CcccCCChhhHHH
Q 017069           32 LCNQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-------AFCAGGDIVSLYH  102 (378)
Q Consensus        32 ~~~~v~~~~~--~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-------~F~~G~Dl~~~~~  102 (378)
                      .++.|.++++  ++|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||||.|+       +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            3678999986  999999999999999999999999999999999999999999999995       8999999987642


Q ss_pred             hhc---cC----ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEe-CceEEeccccccCccC
Q 017069          103 FMN---QG----KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHP  174 (378)
Q Consensus       103 ~~~---~~----~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p  174 (378)
                      ...   ..    ..+........+..++..+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            100   00    001111112234567888999999999999999999999999999999999 9999999999999999


Q ss_pred             CcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCC
Q 017069          175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  253 (378)
Q Consensus       175 ~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (378)
                      ++|++++|+|++|.. |++|++||+.|+|+||+++||||+|||++++++...                            
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------  264 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL----------------------------  264 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHH----------------------------
Confidence            999999999999999 999999999999999999999999999988753222                            


Q ss_pred             chhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 017069          254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL  333 (378)
Q Consensus       254 ~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~  333 (378)
                                                             +++++|+.++|.+++.+|++++.... .+.+.+..|.+.+.
T Consensus       265 ---------------------------------------~~A~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~  304 (334)
T 3t8b_A          265 ---------------------------------------QWAAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATR  304 (334)
T ss_dssp             ---------------------------------------HHHHHHHTSCHHHHHHHHHHHHHTCC-CC------------
T ss_pred             ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHH
Confidence                                                   36899999999999999999998754 34455566666666


Q ss_pred             HccccCCCCcHHhhHhhhhcCCCCCCCCCCCC
Q 017069          334 QGVSRLISGDFYEGVRARMVDRDIAPKVPFHL  365 (378)
Q Consensus       334 ~~~~~~~~~d~~egv~afl~ek~r~P~~~~~~  365 (378)
                      .++.   ++|++||+++|+ || |+|+|++.+
T Consensus       305 ~~~~---s~d~~Eg~~AFl-eK-R~P~f~~~~  331 (334)
T 3t8b_A          305 LAYM---TDEAVEGRDAFL-QK-RPPDWSPFP  331 (334)
T ss_dssp             --------------------------------
T ss_pred             HHhc---CHHHHHHHHHHH-cC-CCCCCCCCC
Confidence            6666   999999999999 98 999998753

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=7.8e-55  Score=412.25  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=224.0

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCC-
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK-  108 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~-  108 (378)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++........ 
T Consensus         6 ~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   84 (287)
T 3gkb_A            6 DAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL   84 (287)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence            34678999999999999999998 7999999999999999999999999999999998 79999999998753210000 


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC-ceEEeccccccCccCCcchHHHHhhcch
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPG  187 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (378)
                      ......+...++.++.++.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  164 (287)
T 3gkb_A           85 AASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVG  164 (287)
T ss_dssp             HHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhC
Confidence            000011123356788889999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (378)
                      .. |++|++||++|+|+||+++||||+|||++++.+.                                           
T Consensus       165 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~-------------------------------------------  201 (287)
T 3gkb_A          165 RNRALEVVLTADLFDAETAASYGWINRALPADELDEY-------------------------------------------  201 (287)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHH-------------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHH-------------------------------------------
Confidence            99 9999999999999999999999999998776432                                           


Q ss_pred             cCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHh
Q 017069          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (378)
Q Consensus       267 f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  346 (378)
                                              +.+++++|++.||.+++.+|++++..   ...++++.|...+..++.   ++|++|
T Consensus       202 ------------------------a~~lA~~la~~~p~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~---s~d~~e  251 (287)
T 3gkb_A          202 ------------------------VDRVARNIAALPDGVIEAAKRSLPAD---DLKEGLLGENDAWAATFS---LPAAQQ  251 (287)
T ss_dssp             ------------------------HHHHHHHHHTSCTTHHHHHHHHSCCC---CCHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred             ------------------------HHHHHHHHHcCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhC---CHHHHH
Confidence                                    22368999999999999999999874   346899999999999887   999999


Q ss_pred             hHhhhhcCCC-CCCCCCCC
Q 017069          347 GVRARMVDRD-IAPKVPFH  364 (378)
Q Consensus       347 gv~afl~ek~-r~P~~~~~  364 (378)
                      |+++|+ +|+ +.|+|+.+
T Consensus       252 g~~AF~-ekr~~~P~f~~~  269 (287)
T 3gkb_A          252 LISGGL-KDGAQTPAGERD  269 (287)
T ss_dssp             HHHHHH-HTTTTSHHHHHT
T ss_pred             HHHHHH-hcCCCCCchhhh
Confidence            999999 762 34999865

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=8.7e-53  Score=396.12  Aligned_cols=249  Identities=20%  Similarity=0.237  Sum_probs=218.9

Q ss_pred             ccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh
Q 017069           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        30 ~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..|++.|.++++++|++||||||++ |+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++...    ..
T Consensus        20 ~~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~   94 (277)
T 4di1_A           20 GSMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTL----NA   94 (277)
T ss_dssp             ---CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTC----CH
T ss_pred             CCCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccccc----Ch
Confidence            3567789999999999999999998 999999999999999999999999999999999999999999998642    33


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      .....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~  174 (277)
T 4di1_A           95 PEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS  174 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence            44556667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |+++++||+.++|+||+++||||+|+|++++.+..                                            
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a--------------------------------------------  210 (277)
T 4di1_A          175 RAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSA--------------------------------------------  210 (277)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHH--------------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHH--------------------------------------------
Confidence             99999999999999999999999999988775322                                            


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                                             .+++++|++.||.+++.+|++++.+...+++++++.|...+..++.   ++      
T Consensus       211 -----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~------  258 (277)
T 4di1_A          211 -----------------------VAWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVELFA---AG------  258 (277)
T ss_dssp             -----------------------HHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTS---GG------
T ss_pred             -----------------------HHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---Cc------
Confidence                                   2368899999999999999999999999999999999999999886   55      


Q ss_pred             hhhhcCCCCCCC--CCCCC
Q 017069          349 RARMVDRDIAPK--VPFHL  365 (378)
Q Consensus       349 ~afl~ek~r~P~--~~~~~  365 (378)
                           || |+|+  |+++.
T Consensus       259 -----ek-R~P~~~f~g~~  271 (277)
T 4di1_A          259 -----QR-GPDGRGPGGGN  271 (277)
T ss_dssp             -----GC------------
T ss_pred             -----cc-CCCcCcCCCCC
Confidence                 77 9999  99863

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=7.7e-53  Score=391.78  Aligned_cols=245  Identities=15%  Similarity=0.221  Sum_probs=204.5

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      |.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++||||| .|++||+|+|++++...   ...+....
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~---~~~~~~~~   78 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEE   78 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhc---CchhhHHH
Confidence            678889999999999999999999999999999999999999999999999 89999999999987532   11222234


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                      +...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. +.++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l  157 (250)
T 2a7k_A           79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI  157 (250)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence            45567788899999999999999999999999999999999999999999999999999999999 999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      ++||+.++|+||+++||||+|+|++++.+.                                                  
T Consensus       158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~--------------------------------------------------  187 (250)
T 2a7k_A          158 IYQCQSLDAPRCVDYRLVNQVVESSALLDA--------------------------------------------------  187 (250)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHH--------------------------------------------------
T ss_pred             HHcCCcccHHHHHHcCCcceecCHHHHHHH--------------------------------------------------
Confidence            999999999999999999999997665432                                                  


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhc
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV  353 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~  353 (378)
                                       +.+++++|++.||.+++.+|++++.+...+++++++.|.+.+..++.   ++|++||+++|+ 
T Consensus       188 -----------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~-  246 (250)
T 2a7k_A          188 -----------------AITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQ---ARDAQGHFKNVL-  246 (250)
T ss_dssp             -----------------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             -----------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-
Confidence                             22368899999999999999999998877899999999998888886   999999999999 


Q ss_pred             CC
Q 017069          354 DR  355 (378)
Q Consensus       354 ek  355 (378)
                      +|
T Consensus       247 ek  248 (250)
T 2a7k_A          247 GK  248 (250)
T ss_dssp             --
T ss_pred             hc
Confidence            77

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8e-54  Score=400.05  Aligned_cols=247  Identities=22%  Similarity=0.219  Sum_probs=193.0

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      .++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++.........  
T Consensus        10 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   87 (258)
T 3lao_A           10 GPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGF--   87 (258)
T ss_dssp             SSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBC--
T ss_pred             CCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhH--
Confidence            567899999999999999999999999999999999999999999999999999999999999999998653221111  


Q ss_pred             HHHHHHHHHHHHHHH-hcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          112 CKDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i-~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        .+...+++++.++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        88 --~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  165 (258)
T 3lao_A           88 --RYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTD  165 (258)
T ss_dssp             --CCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence              1112233456677 899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |++|++||+.++|+||+++||||+|+|++++.+...                                            
T Consensus       166 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  201 (258)
T 3lao_A          166 AMRYILTGDEFDADEALRMRLLTEVVEPGEELARAL--------------------------------------------  201 (258)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988753222                                            


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                             +++++|++.||.+++.+|+++++....+++++++.|.+.+..++.   ++|++||++
T Consensus       202 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~  255 (258)
T 3lao_A          202 -----------------------EYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIG---SEDVREGVL  255 (258)
T ss_dssp             -----------------------HHHHHHHHSCHHHHHHHHHHHHHHTC-------------------------------
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   368999999999999999999999888999999999999998887   999999999


Q ss_pred             hhh
Q 017069          350 ARM  352 (378)
Q Consensus       350 afl  352 (378)
                      +|+
T Consensus       256 AF~  258 (258)
T 3lao_A          256 AMV  258 (258)
T ss_dssp             ---
T ss_pred             hhC
Confidence            996

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.4e-52  Score=390.67  Aligned_cols=244  Identities=14%  Similarity=0.181  Sum_probs=207.6

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      .|.++++++|++||||||++.|+||.+|+.+|.++++.++. +++++|||||.|++||+|+|++++...    .......
T Consensus         8 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~~~   82 (254)
T 3isa_A            8 PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ----SEGDLLL   82 (254)
T ss_dssp             SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS----CHHHHHH
T ss_pred             eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc----CchhHHH
Confidence            38999999999999999999999999999999999999987 589999999999999999999987532    2223333


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                      .+..++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|.. |.++
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l  159 (254)
T 3isa_A           83 RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSI  159 (254)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHH
Confidence            445567888999999999999999999999999999999999999999999999999998   378999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      ++||+.++|+||+++||||+|+|++++++...                                                
T Consensus       160 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------  191 (254)
T 3isa_A          160 LGSARAFDADEARRIGFVRDCAAQAQWPALID------------------------------------------------  191 (254)
T ss_dssp             HTTTCEEEHHHHHHTTSSSEECCGGGHHHHHH------------------------------------------------
T ss_pred             HHhCCCCcHHHHHHCCCccEEeChhHHHHHHH------------------------------------------------
Confidence            99999999999999999999999988754222                                                


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhc
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMV  353 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~  353 (378)
                                         ++++++++.+|.+++.+|++++.       +.++.|...+...+.   ++|++|||++|+ 
T Consensus       192 -------------------~~a~~la~~~~~a~~~~K~~l~~-------~~~~~e~~~~~~~~~---s~d~~egi~af~-  241 (254)
T 3isa_A          192 -------------------AAAEAATALDPATRATLHRVLRD-------DHDDADLAALARSAA---QPGFKARIRDYL-  241 (254)
T ss_dssp             -------------------HHHHHHTTSCHHHHHHHHHHHSC-------CCHHHHHHHHHHHHH---STTHHHHHHHHH-
T ss_pred             -------------------HHHHHHHcCCHHHHHHHHHHHhh-------hhHHHHHHHHHHHhC---CHHHHHHHHHHH-
Confidence                               35889999999999999999843       233456777777777   999999999999 


Q ss_pred             CCCCCCCCCCCC
Q 017069          354 DRDIAPKVPFHL  365 (378)
Q Consensus       354 ek~r~P~~~~~~  365 (378)
                      +| |+|.|++.+
T Consensus       242 ek-r~p~~~~~~  252 (254)
T 3isa_A          242 AQ-PAAEGHHHH  252 (254)
T ss_dssp             HC----------
T ss_pred             hc-CCCCCCCCC
Confidence            88 999999863

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=2.6e-52  Score=390.75  Aligned_cols=249  Identities=18%  Similarity=0.201  Sum_probs=210.0

Q ss_pred             CceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhh--ccCChH
Q 017069           34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM--NQGKLE  110 (378)
Q Consensus        34 ~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~--~~~~~~  110 (378)
                      +.+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++....  ......
T Consensus         6 ~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (263)
T 3l3s_A            6 DGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA   84 (263)
T ss_dssp             --CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHH
T ss_pred             cceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHH
Confidence            4455665 88999999999999 9999999999999999999999999999999999999999999875421  112344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. 
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~  163 (263)
T 3l3s_A           85 FVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRA  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHH
Confidence            556677778899999999999999999999999999999999999999999999999999999 577899999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      |+++++||+.++|+||+++||||+|+|++++.+.                                              
T Consensus       164 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~----------------------------------------------  197 (263)
T 3l3s_A          164 VTEMALTGATYDADWALAAGLINRILPEAALATH----------------------------------------------  197 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHH----------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998766432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                           +.+++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++||++
T Consensus       198 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~  253 (263)
T 3l3s_A          198 ---------------------VADLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFM---DPGRRHLDW  253 (263)
T ss_dssp             ---------------------HHHHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC------------
T ss_pred             ---------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                 22368999999999999999999999999999999999999999997   999999999


Q ss_pred             hhhcCC
Q 017069          350 ARMVDR  355 (378)
Q Consensus       350 afl~ek  355 (378)
                      +|. +.
T Consensus       254 Af~-~~  258 (263)
T 3l3s_A          254 IDE-GH  258 (263)
T ss_dssp             ------
T ss_pred             Hhh-cc
Confidence            998 53

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.8e-52  Score=391.28  Aligned_cols=250  Identities=15%  Similarity=0.163  Sum_probs=217.8

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCChhhHHHhhccCChHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      .+.++.+++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||. |++||+|+|++++..    .+.....
T Consensus         6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~~~~~~   80 (260)
T 1sg4_A            6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPAHYA   80 (260)
T ss_dssp             EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHHHHH
T ss_pred             EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhc----cCHHHHH
Confidence            3667778999999999996 799999999999999999999999999999999 699999999998742    1233344


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEe--CceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  160 (260)
T 1sg4_A           81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  160 (260)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            555667788999999999999999999999999999999999999  8999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .++++||+.++|+||+++||||+|+|++++.+..                                              
T Consensus       161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a----------------------------------------------  194 (260)
T 1sg4_A          161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTA----------------------------------------------  194 (260)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHH----------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987774322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                           .+++++|+..||.+++.+|++++.....+++++++.|.+.+..++.   ++|++||+++
T Consensus       195 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  250 (260)
T 1sg4_A          195 ---------------------LSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKSLQM  250 (260)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHHHTC
T ss_pred             ---------------------HHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                 2358899999999999999999988777788899999999998887   9999999999


Q ss_pred             hhcCCCCCCCC
Q 017069          351 RMVDRDIAPKV  361 (378)
Q Consensus       351 fl~ek~r~P~~  361 (378)
                      |+ +| |+|+-
T Consensus       251 f~-ek-r~~~~  259 (260)
T 1sg4_A          251 YL-ER-LKEEK  259 (260)
T ss_dssp             -----------
T ss_pred             HH-Hh-hcccC
Confidence            99 88 77764

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=6.5e-52  Score=392.60  Aligned_cols=247  Identities=16%  Similarity=0.132  Sum_probs=220.9

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCChhhHHHhhccCCh
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL  109 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~  109 (378)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|+ +||+|+|++++.....    
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~----   79 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTA----   79 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHH----
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCc----
Confidence            35678999999999999999998 89999999999999999999999999999999995 5566779998864311    


Q ss_pred             HHHH---HHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhc
Q 017069          110 EECK---DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHL  185 (378)
Q Consensus       110 ~~~~---~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (378)
                      ....   .+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~  159 (289)
T 3h0u_A           80 EAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL  159 (289)
T ss_dssp             HHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHH
Confidence            1100   22345677888999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             chHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHH
Q 017069          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (378)
Q Consensus       186 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (378)
                      +|.. |++|++||+.++|+||+++||||+|||++++.+.                                         
T Consensus       160 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~-----------------------------------------  198 (289)
T 3h0u_A          160 LGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEF-----------------------------------------  198 (289)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHH-----------------------------------------
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHH-----------------------------------------
Confidence            9999 9999999999999999999999999998776432                                         


Q ss_pred             HhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcH
Q 017069          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (378)
Q Consensus       265 ~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  344 (378)
                                                +.+++++|++.||.+++.+|++++.... +++++++.|...+..++.   ++|+
T Consensus       199 --------------------------a~~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~---s~d~  248 (289)
T 3h0u_A          199 --------------------------VAGIAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAALFQQLVR---GEKV  248 (289)
T ss_dssp             --------------------------HHHHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTT---SHHH
T ss_pred             --------------------------HHHHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhC---CHHH
Confidence                                      2236899999999999999999999887 899999999999999887   9999


Q ss_pred             HhhHhhhhcC
Q 017069          345 YEGVRARMVD  354 (378)
Q Consensus       345 ~egv~afl~e  354 (378)
                      +||+++|+ +
T Consensus       249 ~egi~AFl-e  257 (289)
T 3h0u_A          249 QQRTAELF-K  257 (289)
T ss_dssp             HHHHHHHH-H
T ss_pred             HHHHHHHh-C
Confidence            99999999 7

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.9e-51  Score=379.41  Aligned_cols=239  Identities=18%  Similarity=0.229  Sum_probs=215.2

Q ss_pred             ceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHH
Q 017069           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        35 ~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      ...++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ...     
T Consensus         4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~-----   77 (243)
T 2q35_A            4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTR-GEV-----   77 (243)
T ss_dssp             EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHT-TCC-----
T ss_pred             eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccc-hhh-----
Confidence            45678899999999999999999999999999999999999999999999999999999999998764321 110     


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                         ..++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus        78 ---~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  154 (243)
T 2q35_A           78 ---EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM  154 (243)
T ss_dssp             ---CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence               124566788999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      ++||+.++|+||+++||||+|+|++++.+.                                                  
T Consensus       155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~--------------------------------------------------  184 (243)
T 2q35_A          155 IYTGENYRGKELAERGIPFPVVSRQDVLNY--------------------------------------------------  184 (243)
T ss_dssp             HHHCCCEEHHHHHHTTCSSCEECHHHHHHH--------------------------------------------------
T ss_pred             HHcCCCCCHHHHHHcCCCCEecChhHHHHH--------------------------------------------------
Confidence            999999999999999999999998766432                                                  


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                                       +.+++++|++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|++||+++|.
T Consensus       185 -----------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a~~  243 (243)
T 2q35_A          185 -----------------AQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFN---QPEIASRIQQEF  243 (243)
T ss_dssp             -----------------HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---STTHHHHHHTTC
T ss_pred             -----------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHhhcC
Confidence                             22368899999999999999999998877889999999999988887   999999999874

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2e-50  Score=389.80  Aligned_cols=265  Identities=18%  Similarity=0.203  Sum_probs=210.9

Q ss_pred             CCccccCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc
Q 017069           26 SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN  105 (378)
Q Consensus        26 ~~~~~~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~  105 (378)
                      .+.....++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.....
T Consensus        27 ~~~~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~  106 (333)
T 3njd_A           27 RPVDFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSS  106 (333)
T ss_dssp             --CCTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------
T ss_pred             CCCCCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccc
Confidence            34445678899999999999999999999999999999999999999999999999999999999999999998764321


Q ss_pred             cCCh--------------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC
Q 017069          106 QGKL--------------------------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG  159 (378)
Q Consensus       106 ~~~~--------------------------~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~  159 (378)
                      ....                          .....+...++.++..+.++||||||+|||+|+|||++|+++||+|||++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~  186 (333)
T 3njd_A          107 SAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAA  186 (333)
T ss_dssp             ------CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECT
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECC
Confidence            1000                          01234556677788899999999999999999999999999999999999


Q ss_pred             ceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHH
Q 017069          160 KTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVI  238 (378)
Q Consensus       160 ~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~  238 (378)
                      +++|++||+++|++|++|   +|++++|.. |++|++||+.|+|+||+++||||+|||++++++...             
T Consensus       187 ~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-------------  250 (333)
T 3njd_A          187 DAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTE-------------  250 (333)
T ss_dssp             TCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHH-------------
T ss_pred             CCeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHH-------------
Confidence            999999999999999876   478999999 999999999999999999999999999887753222             


Q ss_pred             HHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Q 017069          239 EACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF  318 (378)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~  318 (378)
                                                                            +++++|++.||.+++.+|++++++..
T Consensus       251 ------------------------------------------------------~lA~~ia~~~~~al~~~K~~l~~~~~  276 (333)
T 3njd_A          251 ------------------------------------------------------RLVERIAAMPVNQLIMAKLACNTALL  276 (333)
T ss_dssp             ------------------------------------------------------HHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                                                                  36899999999999999999998865


Q ss_pred             C-CHHHH--HHHHHHHHHHccccCCCCcH-----HhhHhhhhcCCCCCCCCCCC
Q 017069          319 Q-TFDEC--LVREYRMSLQGVSRLISGDF-----YEGVRARMVDRDIAPKVPFH  364 (378)
Q Consensus       319 ~-~~~~~--l~~e~~~~~~~~~~~~~~d~-----~egv~afl~ek~r~P~~~~~  364 (378)
                      . .+...  +............  ....|     .+|+++|+ +| |.|.|.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~--e~~~f~~~~~~~g~~a~~-ek-R~~~f~~~  326 (333)
T 3njd_A          277 NQGVATSQMVSTVFDGIARHTP--EGHAFVATAREHGFREAV-RR-RDEPMGDH  326 (333)
T ss_dssp             TTTHHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHHCHHHHH-HH-HHGGGTCC
T ss_pred             hcchhHHHHHHHHHHHHHhcCh--HHHHHHHHhhhHHHHHHH-Hh-cCCCCCCc
Confidence            3 44433  2111111111000  01223     79999999 88 99999985

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=4.3e-50  Score=379.11  Aligned_cols=250  Identities=15%  Similarity=0.124  Sum_probs=206.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCC---h
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK---L  109 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~---~  109 (378)
                      ++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........   .
T Consensus         8 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   87 (280)
T 1pjh_A            8 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   87 (280)
T ss_dssp             BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             CCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence            4679999999999999999999999999999999999999999999999999999999999999998753211110   0


Q ss_pred             HH----HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEe-CceEEeccccccCccCCcchHHHHhh
Q 017069          110 EE----CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSH  184 (378)
Q Consensus       110 ~~----~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (378)
                      ..    ...++...+.++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r  167 (280)
T 1pjh_A           88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL  167 (280)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHH
Confidence            11    11222334677889999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCC--hhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHH
Q 017069          185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEK--LPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (378)
Q Consensus       185 ~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~--l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (378)
                      ++|.. |.+|++||+.++|+||+++||||+|+|+++  ++++..                                    
T Consensus       168 ~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~------------------------------------  211 (280)
T 1pjh_A          168 KFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA------------------------------------  211 (280)
T ss_dssp             HHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHH------------------------------------
T ss_pred             HhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHH------------------------------------
Confidence            99999 999999999999999999999999999862  111111                                    


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhccCCCcHHH-HHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCC
Q 017069          262 IVDKCFGLDTVEEIIDSLESEASLINDPWC-GSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLI  340 (378)
Q Consensus       262 ~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a-~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~  340 (378)
                                                  .+ .+++++|++.||.+++.+|++++......++..            .   
T Consensus       212 ----------------------------~a~~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~------------~---  248 (280)
T 1pjh_A          212 ----------------------------KVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKA------------N---  248 (280)
T ss_dssp             ----------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHH------------H---
T ss_pred             ----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHh------------h---
Confidence                                        11 136889999999999999999987653222221            2   


Q ss_pred             CCcHHhhHhhhhcCCCCCC-CCCC
Q 017069          341 SGDFYEGVRARMVDRDIAP-KVPF  363 (378)
Q Consensus       341 ~~d~~egv~afl~ek~r~P-~~~~  363 (378)
                      ++|++||+.+|+ +| |+| .|..
T Consensus       249 ~~d~~e~~~af~-~k-r~~e~~~~  270 (280)
T 1pjh_A          249 SVEVNESLKYWV-DG-EPLKRFRQ  270 (280)
T ss_dssp             HHHHHHHHHHHH-HT-HHHHHHTC
T ss_pred             hHHHHHHHHHHh-CC-ccHHHHHH
Confidence            677777777777 66 666 5664

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1e-49  Score=372.75  Aligned_cols=247  Identities=16%  Similarity=0.141  Sum_probs=214.1

Q ss_pred             cCCCCccccCCCceEEEeeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHH
Q 017069           23 RTSSSVTDDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLY  101 (378)
Q Consensus        23 ~~~~~~~~~~~~~v~~~~~~-~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~  101 (378)
                      +.+.......++.|.++.++ +|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.
T Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~   91 (263)
T 2j5g_A           12 TLNQPEYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLG   91 (263)
T ss_dssp             ---CCGGGGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGC
T ss_pred             CCCcccccCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHh
Confidence            55566666678889999999 99999999999999999999999999999999999999999999999999999999875


Q ss_pred             HhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEec-cccccCccCCcchHH
Q 017069          102 HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASF  180 (378)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~  180 (378)
                      ..   .+.+....++..++.++.++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|+++
T Consensus        92 ~~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~  167 (263)
T 2j5g_A           92 DV---TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHI  167 (263)
T ss_dssp             CT---TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHH
T ss_pred             cc---CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHH
Confidence            31   122223344555677888999999999999999999 5999999999999999999999 999999999999999


Q ss_pred             HHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhH
Q 017069          181 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  259 (378)
Q Consensus       181 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (378)
                      +|++++|.. ++++++||+.++|+||+++||||+|+|++++.+...                                  
T Consensus       168 ~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------  213 (263)
T 2j5g_A          168 LWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAW----------------------------------  213 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHH----------------------------------
T ss_pred             HHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHH----------------------------------
Confidence            999999998 999999999999999999999999999887743222                                  


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccC
Q 017069          260 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  339 (378)
Q Consensus       260 ~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  339 (378)
                                                       +++++|++.+|.+++.+|++++.....+++++++.|.          
T Consensus       214 ---------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~----------  250 (263)
T 2j5g_A          214 ---------------------------------EIARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGYGL----------  250 (263)
T ss_dssp             ---------------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             ---------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHH----------
Confidence                                             3688999999999999999999877666666655543          


Q ss_pred             CCCcHHhhHhhhhcCC
Q 017069          340 ISGDFYEGVRARMVDR  355 (378)
Q Consensus       340 ~~~d~~egv~afl~ek  355 (378)
                          ..|||++|+ +|
T Consensus       251 ----~~eg~~af~-~~  261 (263)
T 2j5g_A          251 ----ALEGITATD-LR  261 (263)
T ss_dssp             ----HHHHHHHHH-TT
T ss_pred             ----HHhhHHHHH-hc
Confidence                469999999 76

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=1.9e-49  Score=365.06  Aligned_cols=228  Identities=19%  Similarity=0.159  Sum_probs=204.8

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |++.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++...    +...
T Consensus         3 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~   76 (233)
T 3r6h_A            3 MSGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG----EAKP   76 (233)
T ss_dssp             --CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHH
T ss_pred             CCCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc----ChHH
Confidence            4467999999999999999985 7999999999999999999987 58999999999999999999998642    2334


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+....++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a  156 (233)
T 3r6h_A           77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAY  156 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            456677788899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .++++||++++|+||+++||||+|+|++++.+..                                              
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------  190 (233)
T 3r6h_A          157 QQAAGLAKTFFGETALAAGFIDEISLPEVVLSRA----------------------------------------------  190 (233)
T ss_dssp             HHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHH----------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988775322                                              


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  332 (378)
                                           .+++++|++.||.+++.+|+++++....+++++++.|...|
T Consensus       191 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          191 ---------------------EEAAREFAGLNQQAHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             ---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                                 23689999999999999999999998888999999887765

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.7e-48  Score=372.12  Aligned_cols=252  Identities=13%  Similarity=0.167  Sum_probs=218.2

Q ss_pred             CCCceEE--EeeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecCCCCcccCCChhhH
Q 017069           32 LCNQVLV--EGKANSRMAILNRPSA----LNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGSGRAFCAGGDIVSL  100 (378)
Q Consensus        32 ~~~~v~~--~~~~~v~~Itln~p~~----~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vvl~g~g~~F~~G~Dl~~~  100 (378)
                      .|+.+.+  +.+++|++||||||+|    +|+||.+|+.+|.++|+.++.     |+++++|||||.|++||+|+|++++
T Consensus        28 ~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~  107 (305)
T 3m6n_A           28 IGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALF  107 (305)
T ss_dssp             -CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHH
T ss_pred             CCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHH
Confidence            3566655  6689999999999998    559999999999999999987     5899999999999999999999998


Q ss_pred             HHhhccCChHHHHHHHHHHHHHHHHH---hcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcc
Q 017069          101 YHFMNQGKLEECKDFFRTLYSFIYLL---GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG  177 (378)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~i---~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g  177 (378)
                      ..............+...+...+..+   ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          108 CQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             HhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            75433333334444555555555544   568999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchh
Q 017069          178 ASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV  256 (378)
Q Consensus       178 ~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (378)
                      ++++|++++|.. |++|++||+.|+|+||+++||||+|||++++++...                               
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------  236 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVE-------------------------------  236 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHH-------------------------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHH-------------------------------
Confidence            999999999999 999999999999999999999999999998854222                               


Q ss_pred             hhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcc
Q 017069          257 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGV  336 (378)
Q Consensus       257 ~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~  336 (378)
                                                          +++++|++ +|.+++.+|++++.....+++++++.|...+..++
T Consensus       237 ------------------------------------~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~  279 (305)
T 3m6n_A          237 ------------------------------------QVIRESKR-TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAM  279 (305)
T ss_dssp             ------------------------------------HHHHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------HHHHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Confidence                                                35788886 89999999999999999999999999999999999


Q ss_pred             ccCCCCcHHhhHhhhhcC
Q 017069          337 SRLISGDFYEGVRARMVD  354 (378)
Q Consensus       337 ~~~~~~d~~egv~afl~e  354 (378)
                      .   ++|....+.++++.
T Consensus       280 ~---s~d~~~~~m~~l~~  294 (305)
T 3m6n_A          280 Q---LGEKSLRTMDRLVR  294 (305)
T ss_dssp             T---CCHHHHHHHHHHHH
T ss_pred             c---CchHHHHHHHHHHH
Confidence            8   99998888877754

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=8.5e-49  Score=360.41  Aligned_cols=225  Identities=15%  Similarity=0.142  Sum_probs=204.0

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++.|  +++|||||.|++||+|+|++++..     .....
T Consensus         5 ~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~-----~~~~~   76 (232)
T 3ot6_A            5 SDLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTS-----SAEAA   76 (232)
T ss_dssp             HHHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHH-----CHHHH
T ss_pred             ccceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhh-----ChHHH
Confidence            356899999999999999985 7999999999999999999977  489999999999999999999864     23344


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ..+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|+++++++++|.. +
T Consensus        77 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a  156 (232)
T 3ot6_A           77 INLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAF  156 (232)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHH
Confidence            566777788999999999999999999999999999999999999998 89999999999998888889999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .++++||+.++|+||+++||||+|+|++++.+...                                             
T Consensus       157 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  191 (232)
T 3ot6_A          157 NRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAAL---------------------------------------------  191 (232)
T ss_dssp             HHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988854222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  332 (378)
                                            +++++|++.||.+++.+|++++.....+++++++.|.+.+
T Consensus       192 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          192 ----------------------AVAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence                                  3689999999999999999999998888999999998754

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=6.8e-48  Score=363.72  Aligned_cols=251  Identities=17%  Similarity=0.205  Sum_probs=202.1

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..........
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~   96 (279)
T 3t3w_A           17 RTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLE   96 (279)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHH
T ss_pred             ccCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999886532211211


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH
Q 017069          111 -ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       111 -~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                       ........++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++++..+ ++++|..
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~~-~~~vG~~  174 (279)
T 3t3w_A           97 FIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHGH-TWELGPR  174 (279)
T ss_dssp             HHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCCH-HHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHHH-HhhcCHH
Confidence             122233455678889999999999999999999999999999999999999999999999994 4444443 9999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       |+++++||++++|+||+++||||+|||++++.+...                                           
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------  211 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETR-------------------------------------------  211 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH-------------------------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888753222                                           


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                              +++++|++.+|.+++.+|+++++... .+++++++.++..          .++.++
T Consensus       212 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~  257 (279)
T 3t3w_A          212 ------------------------ALAGEIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDI----------HQTGHG  257 (279)
T ss_dssp             ------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH----------HHHHHH
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcccHHHHHHHHhhH----------HHHHHH
Confidence                                    36899999999999999999998765 4788888777654          334555


Q ss_pred             HhhhhcCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPF  363 (378)
Q Consensus       348 v~afl~ek~r~P~~~~  363 (378)
                      . +|. .. +.|.+++
T Consensus       258 ~-~~~-~~-~~~~~~~  270 (279)
T 3t3w_A          258 N-AMS-VS-GWPVLVD  270 (279)
T ss_dssp             H-HHH-HT-SSCC---
T ss_pred             H-HHH-hc-CCccccC
Confidence            5 444 33 4565554

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.7e-47  Score=356.71  Aligned_cols=225  Identities=16%  Similarity=0.225  Sum_probs=199.7

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      ++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..    .+.+..
T Consensus        15 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~   90 (257)
T 1szo_A           15 YENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPHDW   90 (257)
T ss_dssp             CTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc----CCHHHH
Confidence            4579999999999999999999999999999999999999999999999999999999999999998642    122223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEec-cccccCccCCcchHHHHhhcchHH-H
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ..+...+++++.++..+||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|.. +
T Consensus        91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A  169 (257)
T 1szo_A           91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG  169 (257)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            344455677888999999999999999999 5999999999999999999999 999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      +++++||+.++|+||+++||||+|+|++++.+.                                               
T Consensus       170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~-----------------------------------------------  202 (257)
T 1szo_A          170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPR-----------------------------------------------  202 (257)
T ss_dssp             HHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHH-----------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCceEEeChHHHHHH-----------------------------------------------
Confidence            999999999999999999999999997666421                                               


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHH
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY  329 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~  329 (378)
                                          +.+++++|++.+|.+++.+|+++++....+++++++.|.
T Consensus       203 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~~~  241 (257)
T 1szo_A          203 --------------------AWELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGL  241 (257)
T ss_dssp             --------------------HHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence                                223689999999999999999999887777777777654

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=1.2e-47  Score=378.80  Aligned_cols=248  Identities=19%  Similarity=0.150  Sum_probs=201.4

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--------C-CCcccCCChhhHHH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--------G-RAFCAGGDIVSLYH  102 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~--------g-~~F~~G~Dl~~~~~  102 (378)
                      .++.|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||||.        | ++||+|+|++++..
T Consensus       165 ~~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          165 EMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             ECSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CCceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            35679999999999999999999999999999999999999999999999999994        6 79999999998764


Q ss_pred             hhccCChHHHHHHHHHHHHHHHHH------------hcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccccc
Q 017069          103 FMNQGKLEECKDFFRTLYSFIYLL------------GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI  170 (378)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~i------------~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~  170 (378)
                      ................++.++..+            ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          245 GGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             TCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             cCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            211111100111122234454444            47999999999999999999999999999999999999999999


Q ss_pred             CccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhcccc
Q 017069          171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV  249 (378)
Q Consensus       171 Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  249 (378)
                      |++|++| +++|++++|.. +++|++||+.|+|+||+++||||+|||++++++...                        
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~------------------------  379 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIE------------------------  379 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHH------------------------
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHH------------------------
Confidence            9999887 68999999999 999999999999999999999999999866642111                        


Q ss_pred             CCCCchhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHH---HHHH
Q 017069          250 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFD---ECLV  326 (378)
Q Consensus       250 ~~~~~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~---~~l~  326 (378)
                                                                 +++++   .++.++..+|++++.... .++   +.+.
T Consensus       380 -------------------------------------------~~A~~---la~~Av~~~K~~l~~~~~-~~~~~~~~l~  412 (440)
T 2np9_A          380 -------------------------------------------RSLTR---LDGDAVLANRRMLNLADE-SPDGFRAYMA  412 (440)
T ss_dssp             -------------------------------------------HHHHT---TCSHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             -------------------------------------------HHHHH---hCHHHHHHHHHHHHhhhc-chhHHHHHHH
Confidence                                                       12333   356899999999998754 443   4555


Q ss_pred             HHHHHHHHccccCCCCcHHhhHhhhhcCC
Q 017069          327 REYRMSLQGVSRLISGDFYEGVRARMVDR  355 (378)
Q Consensus       327 ~e~~~~~~~~~~~~~~d~~egv~afl~ek  355 (378)
                      .|...+..++.   ++|++||+++|+ +|
T Consensus       413 ~e~~~~~~~~~---s~D~~Egv~AFl-eK  437 (440)
T 2np9_A          413 EFALMQALRLY---GHDVIDKVGRFG-GR  437 (440)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHTCC---
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHH-hC
Confidence            66666666666   999999999999 87

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=3.6e-46  Score=391.66  Aligned_cols=277  Identities=19%  Similarity=0.246  Sum_probs=217.4

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      ..++.+|+|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++....   ...     
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~---~~~-----   93 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFT---PGL-----   93 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSC---SCS-----
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccC---hhH-----
Confidence            345668999999999997 79999999999999999999999999999999999999999999875421   111     


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                        .+..++.++.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        94 --~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~  171 (742)
T 3zwc_A           94 --ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI  171 (742)
T ss_dssp             --HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH
Confidence              234577888999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||+.++|+||+++||||+|++++.+++..+...++..+++.....    .....                 ...+....
T Consensus       172 ltG~~i~a~eA~~~GLv~~vv~~d~~~~A~~~A~~ia~~~~~~~~~----~~~~~-----------------~~~~~~~~  230 (742)
T 3zwc_A          172 TSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRI----FNKPV-----------------PSLPNMDS  230 (742)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEESSCHHHHHHHHHHHHTTSCSGGGCG----GGSCC-----------------CCCTTHHH
T ss_pred             HcCCchhHHHHHHcCCccEecCchhhHHHHHHHHHHhcCCchhhhh----hcccc-----------------cccchhhh
Confidence            9999999999999999999999876543222222232222211100    00000                 00011111


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHh--cCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhh
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKE--ASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARM  352 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~--~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl  352 (378)
                      ...               ....++.+  ..+.|...++++++.+...+++++++.|.+.|..++.   +++.++++++|+
T Consensus       231 ~~~---------------~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~---s~~~k~~~~aFf  292 (742)
T 3zwc_A          231 VFA---------------EAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRA---SGQAKALQYAFF  292 (742)
T ss_dssp             HHH---------------HHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH
T ss_pred             hHH---------------HHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence            111               11122222  2345888889999999999999999999999999998   999999999999


Q ss_pred             cCCCCCCCCCC
Q 017069          353 VDRDIAPKVPF  363 (378)
Q Consensus       353 ~ek~r~P~~~~  363 (378)
                       .+.+..+|..
T Consensus       293 -~~r~~~k~~~  302 (742)
T 3zwc_A          293 -AEKSANKWST  302 (742)
T ss_dssp             -HHHHTTSCBC
T ss_pred             -HHhhcccccc
Confidence             4423445543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=6.2e-45  Score=383.50  Aligned_cols=292  Identities=15%  Similarity=0.106  Sum_probs=225.8

Q ss_pred             CceEEE-eeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCChhhHHHhhccCChH
Q 017069           34 NQVLVE-GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        34 ~~v~~~-~~~~v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +.+.++ .+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++||||| |+ .||+|+|++++..... ...+
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~-~~~~   83 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFK-LPDA   83 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTT-SCHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhccc-CCHH
Confidence            467888 78899999999998 899999999999999999999999999999999 76 9999999998864311 1222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~  163 (715)
T 1wdk_A           84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence            3344556678889999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhh-hcCCC-HHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK-LVTDD-PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      |.+|++||+.++|+||+++||||+|+|++++.+...++++ +.... +.....   +....+.. .+ ..          
T Consensus       164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~---~~~~~p~~-~~-~~----------  228 (715)
T 1wdk_A          164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR---QPKLEKLK-LN-AI----------  228 (715)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH---GGGGSCCS-CC-HH----------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc---ccccCccc-cC-ch----------
Confidence            9999999999999999999999999998887654444432 11110 000000   00000000 00 00          


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                         .....+            ..+++.+.+-.+....|.+.+|++++.+...+++++++.|.+.+..++.   ++|++++
T Consensus       229 ---~~~~~~------------~~~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~  290 (715)
T 1wdk_A          229 ---EQMMAF------------ETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCL  290 (715)
T ss_dssp             ---HHHHHH------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ---hHHHHH------------HHHHHHHHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---chhHHHH
Confidence               000000            0111122233333344777889999999888999999999999999987   9999999


Q ss_pred             HhhhhcCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVP  362 (378)
Q Consensus       348 v~afl~ek~r~P~~~  362 (378)
                      +++|+ +| |+|+..
T Consensus       291 ~~aF~-~k-r~~~~~  303 (715)
T 1wdk_A          291 IGLFL-ND-QELKKK  303 (715)
T ss_dssp             HHHHH-HH-HHHHHH
T ss_pred             HHHHH-hh-hhhhcc
Confidence            99999 77 665543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-45  Score=386.95  Aligned_cols=290  Identities=18%  Similarity=0.181  Sum_probs=221.9

Q ss_pred             CceEEE-eeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCChhhHHHhhccCChHH
Q 017069           34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        34 ~~v~~~-~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +.+.++ .+++|++|||||| +.|+||.+|+.+|.++++.++.|+++++||||| |+ .||+|+|++++...... ....
T Consensus         7 ~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~-~~~~   83 (725)
T 2wtb_A            7 GKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKG-NVKE   83 (725)
T ss_dssp             CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-------------C
T ss_pred             CeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccch-hhhh
Confidence            357888 7889999999999 799999999999999999999999999999999 75 99999999987532100 0000


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |
T Consensus        84 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A  163 (725)
T 2wtb_A           84 PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKA  163 (725)
T ss_dssp             CSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHH
Confidence            011233456667788999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc--C
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF--G  268 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~  268 (378)
                      .+|++||+.++|+||+++||||+|+|++++.+...++++              +......+......         |  .
T Consensus       164 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~--------------~la~~~~p~~~~~~---------~~~~  220 (725)
T 2wtb_A          164 LEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWAL--------------DIVGRRKPWVSSVS---------KTDK  220 (725)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHH--------------HHHTTSSCCCCGGG---------CCTT
T ss_pred             HHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHH--------------HHHhcCCChhhhhh---------hccc
Confidence            999999999999999999999999999888654443321              11110000000000         0  0


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                      .+......+.         -+++.+.+++..+.+| +...+|++++.+...+++++++.|.+.+..++.   ++|+++++
T Consensus       221 ~~~~~~~~~~---------~~~a~~~~~~~~~g~p-A~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~~  287 (725)
T 2wtb_A          221 LPPLGEAREI---------LTFAKAQTLKRAPNMK-HPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVK---LDTTKGLI  287 (725)
T ss_dssp             SCCHHHHHHH---------HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             cCccchHHHH---------HHHHHHHHHHhccCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---chhHHHHH
Confidence            0001111111         1245555666666666 556689999999989999999999999999987   99999999


Q ss_pred             hhhhcCCCCCCCCCCC
Q 017069          349 RARMVDRDIAPKVPFH  364 (378)
Q Consensus       349 ~afl~ek~r~P~~~~~  364 (378)
                      ++|+ +| |+|++...
T Consensus       288 ~aF~-~k-r~~~~~~~  301 (725)
T 2wtb_A          288 HVFF-SQ-RGTAKVPG  301 (725)
T ss_dssp             HHHH-HH-HGGGCCTT
T ss_pred             HHhh-hh-hhhcccCC
Confidence            9999 77 77776543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.1e-41  Score=339.33  Aligned_cols=187  Identities=15%  Similarity=0.178  Sum_probs=170.5

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEec-CCCCcccCCChh
Q 017069           31 DLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKG-SGRAFCAGGDIV   98 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~----------~~Nal~~~~~~eL~~~l~~~~~d-~~v~~vvl~g-~g~~F~~G~Dl~   98 (378)
                      ..++.|.++.+++|++||||||+          +.|+||.+|+.+|.++++.++.| ++|++||||| .|++||+|+|++
T Consensus        18 ~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~   97 (556)
T 2w3p_A           18 SQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIF   97 (556)
T ss_dssp             GGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHH
T ss_pred             CcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHH
Confidence            46678999999999999999998          89999999999999999999999 9999999999 889999999999


Q ss_pred             hHHHhhccCChHHHHHHHHHHHHHHHHH----hcCCCcEEEEEcceeechhhcccccCCeEEEeCc--eEEeccccc-cC
Q 017069           99 SLYHFMNQGKLEECKDFFRTLYSFIYLL----GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IG  171 (378)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~G  171 (378)
                      ++...    .......+...++.++..+    .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|
T Consensus        98 el~~~----~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LG  173 (556)
T 2w3p_A           98 MLGLS----THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG  173 (556)
T ss_dssp             HHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHS
T ss_pred             HHhhc----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccC
Confidence            88642    1222233445567788888    9999999999999999999999999999999999  999999999 99


Q ss_pred             ccCCcchHHHHh--hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          172 FHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       172 l~p~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      ++|++|++++|+  |++|.. |.++++||+.++|+||+++||||+|+|++++.
T Consensus       174 L~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~  226 (556)
T 2w3p_A          174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFD  226 (556)
T ss_dssp             SCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHH
T ss_pred             CCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHH
Confidence            999999999999  999998 99999999999999999999999999977664

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.82  E-value=1.2e-20  Score=194.77  Aligned_cols=163  Identities=17%  Similarity=0.167  Sum_probs=133.7

Q ss_pred             eeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHH
Q 017069           40 GKANSRMAILNRPSALNA--LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  117 (378)
Q Consensus        40 ~~~~v~~Itln~p~~~Na--l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~  117 (378)
                      .+++|++|++|+|...|+  ++..+..+|.++|+.+..|+++++|||++.+    .|+|+...                .
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~----------------~  358 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS----------------E  358 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH----------------H
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH----------------H
Confidence            457899999999988888  6889999999999999999999999999974    57787542                1


Q ss_pred             HHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccc------------ccCccCCc---------
Q 017069          118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDA---------  176 (378)
Q Consensus       118 ~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~---------  176 (378)
                      .+++.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++            ++|+.|..         
T Consensus       359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~  438 (593)
T 3bf0_A          359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV  438 (593)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred             HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence            234455667788999999999999999999999999999999999999985            58887542         


Q ss_pred             ----chH---------------HHHhhcchHH------HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 017069          177 ----GAS---------------FYLSHLPGHL------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       177 ----g~~---------------~~l~r~~g~~------a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                          +++               ..+.+.++..      +.+++++|+.++|+||+++||||++++.+++.+
T Consensus       439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~  509 (593)
T 3bf0_A          439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  509 (593)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHH
Confidence                222               3444555432      577899999999999999999999998666543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.80  E-value=4.9e-19  Score=162.86  Aligned_cols=161  Identities=12%  Similarity=0.061  Sum_probs=121.6

Q ss_pred             eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHH
Q 017069           41 KANSRMAILNRPSALNALNTN-------MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~-------~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (378)
                      +++|++|+++.+=..+.-...       .+.+|.++|+.+..|+++++|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            467899999876422210111       35889999999999999999999997    6788876431            


Q ss_pred             HHHHHHHHHHHHHhc-CCCcEEEEEcceeechhhcccccCCeEEEeCceEEecc---------------------ccccC
Q 017069          114 DFFRTLYSFIYLLGT-HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP---------------------ETLIG  171 (378)
Q Consensus       114 ~~~~~~~~l~~~i~~-~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p---------------------e~~~G  171 (378)
                          .+.+.+..+.. ++|||||+|+|.|.|||+.|+++||++||++++.|+.+                     +++.|
T Consensus        66 ----~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G  141 (240)
T 3rst_A           66 ----EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG  141 (240)
T ss_dssp             ----HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred             ----HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence                23344555666 89999999999999999999999999999999999999                     55677


Q ss_pred             ccCCcchH--------------------------HHHhhcchHHHHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          172 FHPDAGAS--------------------------FYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       172 l~p~~g~~--------------------------~~l~r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      -.+..+..                          ..-.|.+......-+++|+.+++++|+++||||++.+.+++.
T Consensus       142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~  217 (240)
T 3rst_A          142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTI  217 (240)
T ss_dssp             TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHH
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence            66665522                          122344444433347899999999999999999999865553

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=1.1e-18  Score=158.65  Aligned_cols=147  Identities=12%  Similarity=0.189  Sum_probs=123.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (378)
                      .+.|++|++++     +++..+...|.++|+.++++ ++++|||+..    |.|+|+...                   .
T Consensus         7 ~~~V~vI~i~g-----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-------------------~   57 (230)
T 3viv_A            7 KNIVYVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-------------------M   57 (230)
T ss_dssp             CCEEEEEEEES-----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred             CCeEEEEEEeC-----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-------------------H
Confidence            45799999984     69999999999999999864 6999999986    778876532                   2


Q ss_pred             HHHHHHhcCCCcEEEEE---cceeechhhcccccCCeEEEeCceEEeccccccCccCCcchH---------------HHH
Q 017069          121 SFIYLLGTHLKPHVAIL---NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS---------------FYL  182 (378)
Q Consensus       121 ~l~~~i~~~~kP~Iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l  182 (378)
                      .++..|..+++|||+.|   +|.|.|+|+.|+++||+++|+++++|+.+++..+. |..|.+               ..+
T Consensus        58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l  136 (230)
T 3viv_A           58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL  136 (230)
T ss_dssp             HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence            45566778999999999   99999999999999999999999999999987533 444431               246


Q ss_pred             hhcchH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 017069          183 SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       183 ~r~~g~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      ++..|.  . +.+++.++..++|+||+++||||+|+++
T Consensus       137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            677774  5 8999999999999999999999999986

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.57  E-value=5.8e-15  Score=139.61  Aligned_cols=145  Identities=15%  Similarity=0.168  Sum_probs=115.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++..|..-..|+++..+...+.++++.+.++ .+.+|+|++.|     |+|+.+...        .    +..+.+++
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~--------~----l~~~~~i~  181 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM--------S----LMQMAKTS  181 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH--------H----HHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH--------H----HHHHHHHH
Confidence            666667766678999999999999999999988 89999999966     888865321        1    12234455


Q ss_pred             HHH---hcCCCcEEEEEcceeechh-hcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCC
Q 017069          124 YLL---GTHLKPHVAILNGVTMGGG-AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK  199 (378)
Q Consensus       124 ~~i---~~~~kP~Iaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~  199 (378)
                      ..+   ...++|+|++|+|+|.||| +.++++||++||.++|+|++.           +...+.+.+|..     ++++.
T Consensus       182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~  245 (304)
T 2f9y_B          182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF  245 (304)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred             HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence            555   4559999999999999999 788999999999999999987           345566666643     56889


Q ss_pred             CCHHHHHHcCccceecCCCChhH
Q 017069          200 LNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       200 ~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      .+|+++.++|+||.|++++++.+
T Consensus       246 ~~Ae~~~~~Glvd~Vv~~~el~~  268 (304)
T 2f9y_B          246 QRSEFLIEKGAIDMIVRRPEMRL  268 (304)
T ss_dssp             TBHHHHGGGTCCSEECCHHHHHH
T ss_pred             CCHHHHHhcCCccEEeCcHHHHH
Confidence            99999999999999998865543

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.56  E-value=1.6e-14  Score=130.56  Aligned_cols=139  Identities=12%  Similarity=0.102  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+.+++...|..++.++.++.|+|.-    .|.|+++..                   ...++..|..+++||++.|
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a-------------------g~~I~~~i~~~~~pV~t~v  110 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA-------------------GLAIVDTMNFIKADVQTIV  110 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            78999999999999999887778777764    356665542                   1224455677899999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccCCcch------------------HHHHhhcchH--H-HHHHH
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA------------------SFYLSHLPGH--L-GEFLA  194 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~------------------~~~l~r~~g~--~-a~~l~  194 (378)
                      +|.|.++|+.|+++||.  |+|.+++.|++++.. |..|..|.                  ...+++..|.  . +.+++
T Consensus       111 ~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~  189 (218)
T 1y7o_A          111 MGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA  189 (218)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             ccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999  999999999999987 44442332                  2446666665  3 77788


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCCh
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                      .+|+.++|+||+++||||+|++++++
T Consensus       190 ~~~~~~ta~EA~e~GLVD~v~~~~~~  215 (218)
T 1y7o_A          190 ERDNWMSAQETLEYGFIDEIMANNSL  215 (218)
T ss_dssp             HSCCCBCHHHHHHHTSCSEECCCC--
T ss_pred             hCCCEEcHHHHHHCCCCcEEcCcCCC
Confidence            89999999999999999999987653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.52  E-value=1.7e-13  Score=130.84  Aligned_cols=152  Identities=12%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           41 KANSRMAILNRPS---------ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        41 ~~~v~~Itln~p~---------~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      +|.-+.|.-|++.         ..++++++......+.++.+++.. +-+|.|.-.++++. |.....            
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~------------  180 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEE------------  180 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHH------------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhh------------
Confidence            4444445555554         347899999999999999888764 45665554433222 211110            


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                       ......+.+++..+..+++|+|++|+|.|.|||+.++++||++||++++.|++      +.|.+++..++.+..+.. +
T Consensus       181 -~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A  253 (327)
T 2f9i_A          181 -RGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA  253 (327)
T ss_dssp             -TTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred             -hhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence             11223445667788999999999999999999999999999999999999885      345555555444444445 6


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      .++    +.++|++|+++|+||+|++.
T Consensus       254 ~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          254 AET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HHH----cCCCHHHHHHcCCceEEecC
Confidence            665    78999999999999999984

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.49  E-value=3.2e-13  Score=129.28  Aligned_cols=139  Identities=12%  Similarity=0.018  Sum_probs=107.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 017069           54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH  133 (378)
Q Consensus        54 ~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~  133 (378)
                      ..+++++.......++++.+++.. +-+|.|.-.++++. |.....             ......+.+++..+..+++|+
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~-------------~g~~~~~a~~l~al~~~~vPv  215 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEE-------------RGQSEAIARNLREMSRLGVPV  215 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHH-------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHH-------------HHHHHHHHHHHHHHHhCCCCE
Confidence            347899999999999999888764 55666555433322 211110             112334556677889999999


Q ss_pred             EEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccc
Q 017069          134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLAT  212 (378)
Q Consensus       134 Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~  212 (378)
                      |++|+|.|.|||+.++++||++||+++++|++      +.|.++++.++.+..+.. +.++    ..++|++|+++|+||
T Consensus       216 IavV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd  285 (339)
T 2f9y_A          216 VCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLID  285 (339)
T ss_dssp             EEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCS
T ss_pred             EEEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCee
Confidence            99999999999999999999999999999996      467777777777777666 7776    679999999999999


Q ss_pred             eecCC
Q 017069          213 HYSVS  217 (378)
Q Consensus       213 ~vv~~  217 (378)
                      +|++.
T Consensus       286 ~VV~e  290 (339)
T 2f9y_A          286 SIIPE  290 (339)
T ss_dssp             CCCCC
T ss_pred             EEecC
Confidence            99984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.98  E-value=3.9e-09  Score=94.50  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+.+.+...|..++.++.++.|+|.=.    |.|+++..                   ...++..|..+++||++.+
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v   92 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA-------------------GMAIYDTMVLAPCDIATYA   92 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHCSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            678999999999999987766666655432    44444422                   1234455677899999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchH------------------HHHhhcch--HH-HHHHH
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPG--HL-GEFLA  194 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g--~~-a~~l~  194 (378)
                      .|.|.++|..++++||.  |++.+++.++.....-|.   .|-.                  ..+.+..|  .. ...++
T Consensus        93 ~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  169 (208)
T 2cby_A           93 MGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  169 (208)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            99999999999999998  999999999987765332   1110                  11222222  22 45567


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      ..|..++|+||+++||||++....
T Consensus       170 ~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          170 DRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             HTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             hCCcEEcHHHHHHcCCCcEecCch
Confidence            889999999999999999999754

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.69  E-value=2.3e-07  Score=82.48  Aligned_cols=140  Identities=14%  Similarity=0.072  Sum_probs=96.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaa  136 (378)
                      .++..+...+...|..++.++..+.|+|.=.    |.|+++..                   ...++..|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~-------------------~~~I~~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTA-------------------GFAIYDTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence            3789999999999999987665665555433    44454432                   123445566789999999


Q ss_pred             EcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchH----HHH-----------hhcch--HH-HHHHHhc
Q 017069          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----FYL-----------SHLPG--HL-GEFLALT  196 (378)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~l-----------~r~~g--~~-a~~l~lt  196 (378)
                      +.|.|.++|.-|+++||  .|++.+++.|.+....-|..-...-.    ..+           .+.-|  .. ...++-.
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~  171 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDR  171 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence            99999999999999999  69999999999876543321111000    011           11112  12 3455555


Q ss_pred             CCCCCHHHHHHcCccceecCCCC
Q 017069          197 GAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       197 G~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                      ...++|+||+++||||+|+.+..
T Consensus       172 d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          172 DNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             CCCEEHHHHHHHTSCSEECCCCC
T ss_pred             CceecHHHHHHcCCcCEecCCcc
Confidence            67799999999999999998754

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.62  E-value=1.3e-07  Score=83.57  Aligned_cols=134  Identities=16%  Similarity=0.064  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+...+...|..++.++.++.|+|.=.    |-|+++..                   ...++..|..+++||++.+
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v   91 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-------------------GMSIYDTMQFIKPDVSTIC   91 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            788899999999998887666676666543    44555432                   1234455667889999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchH---H----H-----------Hhhcch--HH-HHHHH
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS---F----Y-----------LSHLPG--HL-GEFLA  194 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~---~----~-----------l~r~~g--~~-a~~l~  194 (378)
                      .|.|..+|.-++++||.  |++.+++.++......|.   .|-.   .    .           +.+..|  .. ...++
T Consensus        92 ~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  168 (193)
T 1yg6_A           92 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  168 (193)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             eeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            99999999999999999  999999999876654332   1110   0    0           111112  12 23333


Q ss_pred             hcCCCCCHHHHHHcCccceecCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      -.+..++|+||+++||||++..+
T Consensus       169 ~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          169 ERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCC
T ss_pred             cCCeEEcHHHHHHcCCCCEecCC
Confidence            33556799999999999999875

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.62  E-value=2.4e-07  Score=83.11  Aligned_cols=138  Identities=13%  Similarity=0.056  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+...+...|..++.++. +.|+|.=.    |-|+++..                   ...++..|..+++||++.+
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a-------------------~~~I~~~i~~~~~pV~t~v  103 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINE-------------------GLAILDIFNYIKSDIQTIS  103 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            688889999999998876554 65555433    44454432                   1234455667889999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccC---Ccch----HHHHh--------hcch--HH-HHHHHhcC
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHP---DAGA----SFYLS--------HLPG--HL-GEFLALTG  197 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l~--------r~~g--~~-a~~l~ltG  197 (378)
                      .|.|..+|.-++++||.  |+|.+++.+++.....|...   +...    ...+.        +..|  .. ...++-.+
T Consensus       104 ~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~  183 (215)
T 2f6i_A          104 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRD  183 (215)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred             eeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCC
Confidence            99999999999999999  99999999987765433211   0000    00011        1111  12 33344344


Q ss_pred             CCCCHHHHHHcCccceecCCCC
Q 017069          198 AKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                      ..++|+||+++||||++.++..
T Consensus       184 ~~lta~eA~e~GLiD~I~~~~~  205 (215)
T 2f6i_A          184 YYMNALEAKQYGIIDEVIETKL  205 (215)
T ss_dssp             CEECHHHHHHHTSCSEECCCSS
T ss_pred             eecCHHHHHHCCCCCEecCCcc
Confidence            5579999999999999997643

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.52  E-value=7.6e-07  Score=82.46  Aligned_cols=146  Identities=12%  Similarity=0.054  Sum_probs=97.1

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 017069           46 MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (378)
Q Consensus        46 ~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (378)
                      +|.++.+     ++..+...+...|..++.++..+.|+|.=.    |-|+++..                   ...++..
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~a-------------------g~aIyd~  135 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTA-------------------GLAIYDT  135 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHH
Confidence            4555544     788899999999988866544566666543    44554432                   1224445


Q ss_pred             HhcCCCcEEEEEcceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHHH---------------Hhhcch-
Q 017069          126 LGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPG-  187 (378)
Q Consensus       126 i~~~~kP~Iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~---------------l~r~~g-  187 (378)
                      |..+++||++.|.|.|..+|.-|+++||.  |++.+++.++......|......-...               +.+..| 
T Consensus       136 I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~  215 (277)
T 1tg6_A          136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQ  215 (277)
T ss_dssp             HHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            66788999999999999999999999999  999999999876654332111000000               001111 


Q ss_pred             -HH-HHHHHhcCCCCCHHHHHHcCccceecCCCC
Q 017069          188 -HL-GEFLALTGAKLNGAEMMACGLATHYSVSEK  219 (378)
Q Consensus       188 -~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~  219 (378)
                       .. ...++-.+..++|+||+++||||+|....+
T Consensus       216 ~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~  249 (277)
T 1tg6_A          216 SLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP  249 (277)
T ss_dssp             CHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC
T ss_pred             CHHHHHHHHhcCcccCHHHHHHCCCCCEecCcch
Confidence             12 344444456679999999999999997643

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.46  E-value=3e-07  Score=81.57  Aligned_cols=135  Identities=16%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav  137 (378)
                      ++..+...+...|..++.++..+.|+|.=.    |.|+++..                   ...++..+..+++|+++.+
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------~~~I~~~i~~~~~~v~t~~   95 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTA-------------------GMGVYDTMQFIKPDVSTIC   95 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHHhCCCeEEEE
Confidence            788999999999999887665665555443    44555432                   1234455667889999999


Q ss_pred             cceeechhhcccccCCe--EEEeCceEEeccccccCccCCcchHH-------HHh-----------hcch--HH-HHHHH
Q 017069          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF-------YLS-----------HLPG--HL-GEFLA  194 (378)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-------~l~-----------r~~g--~~-a~~l~  194 (378)
                      .|.|.++|.-+++++|.  |++.+++.+.+....-|.   .|-..       .+.           +..|  .. ...++
T Consensus        96 ~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~  172 (201)
T 3p2l_A           96 IGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDT  172 (201)
T ss_dssp             EEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             cCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence            99999999999999998  999999999887665332   12110       011           1111  12 33333


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      -....++|+||+++||||+|+++.
T Consensus       173 ~~~~~lta~EA~e~GliD~I~~~~  196 (201)
T 3p2l_A          173 DRDNFMMADEAKAYGLIDHVIESR  196 (201)
T ss_dssp             SSCEEEEHHHHHHHTSCSEECCCS
T ss_pred             hcCeeecHHHHHHcCCccEecCCH
Confidence            334457999999999999999763

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.38  E-value=2.2e-05  Score=78.67  Aligned_cols=178  Identities=12%  Similarity=0.093  Sum_probs=129.5

Q ss_pred             EEeeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEecCCCCcccCCChhhHHHh
Q 017069           38 VEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSGRAFCAGGDIVSLYHF  103 (378)
Q Consensus        38 ~~~~~~v~~Itln~p~~~-------------Nal~~~~~~eL~~~l~~~~-~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~  103 (378)
                      +++..+++.++...|...             +..-..|..||.+++-.+. ++.++...++...|+.       ..+...
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~~~  344 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLLAA  344 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHhhh
Confidence            344557888899886532             2223457889977776665 4678888888877642       332211


Q ss_pred             ----hccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cceeechh-hcccccCCeEEEeC-------ceEEecccccc
Q 017069          104 ----MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVACG-------KTVFATPETLI  170 (378)
Q Consensus       104 ----~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav-~G~a~GgG-~~lal~~D~~ia~~-------~a~f~~pe~~~  170 (378)
                          ....+.....+....+.+.+.++.-.+.-++|.| .|.|+.|- +||+++||..++-+       .+.+.+.+.++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (556)
T 2w3p_A          345 DASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNF  424 (556)
T ss_dssp             HHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGG
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecccc
Confidence                1123344556667777888888988999999999 79998775 69999999999853       37899999999


Q ss_pred             CccCCcchHHHHhhcchH-H-HH--HHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 017069          171 GFHPDAGASFYLSHLPGH-L-GE--FLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (378)
Q Consensus       171 Gl~p~~g~~~~l~r~~g~-~-a~--~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  222 (378)
                      |.+|..-+..+|.++.-. . ..  --...|+++++++|.++|||+...++-+.++
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (556)
T 2w3p_A          425 GLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWAD  480 (556)
T ss_dssp             TTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHH
T ss_pred             CcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHH
Confidence            999998888888776532 2 22  2245699999999999999999888776654

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.13  E-value=2.1e-05  Score=69.60  Aligned_cols=143  Identities=10%  Similarity=0.068  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCc----ccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCC
Q 017069           57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAF----CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  130 (378)
Q Consensus        57 al~~~~~~eL~~~l~~~~~d~~v~--~vvl~g~g~~F----~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  130 (378)
                      .++.++...+...|..++.++..+  .|.|-+.|..-    -.-+|+.                   ....++..|...+
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~-------------------aglaIyd~m~~~~   96 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT-------------------DVISIVDVINYIS   96 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH-------------------HHHHHHHHHHHSS
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH-------------------HHHHHHHHHHhcC
Confidence            389999999999998887543223  23344444110    0002221                   1233555667789


Q ss_pred             CcEEEEEcceeechhhcccccCC--eEEEeCceEEeccccccCc-cCCcchH-------HHHhhc--------chH--H-
Q 017069          131 KPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGF-HPDAGAS-------FYLSHL--------PGH--L-  189 (378)
Q Consensus       131 kP~Iaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl-~p~~g~~-------~~l~r~--------~g~--~-  189 (378)
                      .||...+-|.|.+.|..|++++|  .|++.+++++.+-....|. .-...-.       ..+.+.        -|.  . 
T Consensus        97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~  176 (205)
T 4gm2_A           97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV  176 (205)
T ss_dssp             SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999  5999999999877665444 1111000       011111        111  1 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSE  218 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~  218 (378)
                      ...++-...-++|+||+++||||+|++.+
T Consensus       177 I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          177 ISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            23344445669999999999999999753

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.94  E-value=0.00041  Score=64.57  Aligned_cols=147  Identities=9%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++..|..-..-+++....+.+.++++.+.+.. +-+|.|.-.|+     +-..+   .     ..... .........
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgG-----ar~qE---G-----i~sl~-q~aki~~~l  187 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGG-----ARMQE---G-----IISLM-QMGKTSVSL  187 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECS-----CCGGG---H-----HHHHH-HHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-----cchhh---h-----hhhHh-HHHHHHHHH
Confidence            5555555443567899999999999999888764 67777776443     32222   0     01111 122333455


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcc-cccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      .++....+|.|+.+.|+|.||+... ++.+|+++|.++|.+++-..       -+....+.+.+.         -+--+|
T Consensus       188 ~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP-------~vi~~~~~~~~~---------e~~~~A  251 (285)
T 2f9i_B          188 KRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGR-------RVIEQTINEKLP---------DDFQTA  251 (285)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-------HHHHHHHTSCCC---------TTTTBH
T ss_pred             HHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCH-------HHHHHHhcccch---------HhHhhH
Confidence            6666789999999999999998654 78999999999987775322       111121211111         011247


Q ss_pred             HHHHHcCccceecCCCChh
Q 017069          203 AEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       203 ~eA~~~Glv~~vv~~~~l~  221 (378)
                      +.+.+.|+||.|++++++.
T Consensus       252 e~~~~~G~iD~Iv~~~e~r  270 (285)
T 2f9i_B          252 EFLLEHGQLDKVVHRNDMR  270 (285)
T ss_dssp             HHHHHTTCCSEECCGGGHH
T ss_pred             HHHHhcCCccEEeChHHHH
Confidence            7788999999999987543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.91  E-value=1.9e-05  Score=80.53  Aligned_cols=155  Identities=11%  Similarity=0.036  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++-.+..-..-++.+.....+..+++.+.+.. +-+|.|.-     |+|+.+.+-......  .....+    +..-.
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~----i~~~~  174 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGT----PFFRN  174 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSS--TTSTTH----HHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhccc--cccHHH----HHHHH
Confidence            5566666555667889999999999999888764 56776665     556666543221100  000011    22223


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEecccc--ccCccCCcchHHHHhhcchHH-HHHHH-hcCC
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPET--LIGFHPDAGASFYLSHLPGHL-GEFLA-LTGA  198 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~--~~Gl~p~~g~~~~l~r~~g~~-a~~l~-ltG~  198 (378)
                      ..+....+|+|++|.|+|.|||... ..||++|++++ +.+++.-.  --++.|-        -.++.. |.+++ .||+
T Consensus       175 ~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~~A~el~~~tge  245 (587)
T 1pix_A          175 AELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDR  245 (587)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchhHHHHHHHHhCC
Confidence            4456788999999999999999999 88999998874 88877322  1111110        125666 88888 8898


Q ss_pred             CCCHHH-----H--HHcCccceecCCCC
Q 017069          199 KLNGAE-----M--MACGLATHYSVSEK  219 (378)
Q Consensus       199 ~~~a~e-----A--~~~Glv~~vv~~~~  219 (378)
                      .+++++     .  .+.|++|.++++++
T Consensus       246 ~v~~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          246 TGKTEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             TCCCCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             ccChhhcccHHHHHhhcCceeEecCCHH
Confidence            887665     2  36999999999765

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.78  E-value=0.0001  Score=75.79  Aligned_cols=87  Identities=14%  Similarity=-0.038  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEecCCCCcccC-CChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcce
Q 017069           62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG-GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (378)
Q Consensus        62 ~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~  140 (378)
                      ...++.+.|+.+..|+.++.|+|.-.    |.| +++....                .+++.+..+....|||||.+++ 
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~----------------~I~~~i~~~k~~gkpvva~~~~-  129 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQ----------------YIGKALKEFRDSGKPVYAVGEN-  129 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHH----------------HHHHHHHHHHHTTCCEEEEESC-
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHH----------------HHHHHHHHHHhcCCeEEEEEcc-
Confidence            46778889999999999999999876    444 5654322                2333344445557999999876 


Q ss_pred             eechhhcccccCCeEEEeCceEEeccccc
Q 017069          141 TMGGGAGVSIPGTFRVACGKTVFATPETL  169 (378)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~  169 (378)
                      +.-+|+-|+.+||.+++.+.+.++...+.
T Consensus       130 aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          130 YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            56688999999999999999998876654

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.77  E-value=0.00047  Score=69.40  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=94.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++..|..-..-++.......+..+++.+.++ .+-+|.|.-.     .|+.+.+-        ......    +.+++
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg--------~~~l~~----~~~i~  160 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEG--------VASLGA----YGEIF  160 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGT--------HHHHHH----HHHHH
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhh--------hhhHHH----HHHHH
Confidence            555555555577889999999999999998876 4667777764     44444321        111112    22233


Q ss_pred             HHHhc--CCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCC
Q 017069          124 YLLGT--HLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL  200 (378)
Q Consensus       124 ~~i~~--~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~  200 (378)
                      ..+..  -.+|+|++|.|+|.|||......||++|++++ +.+.+.                    |+..-+ ..+|+.+
T Consensus       161 ~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~-~~~ge~v  219 (530)
T 3iav_A          161 RRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK-TVTGEDV  219 (530)
T ss_dssp             HHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCC
T ss_pred             HHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH-HHhCCcC
Confidence            33222  23999999999999999988889999999885 877763                    222111 2578899


Q ss_pred             CHHHH-------HHcCccceecCCCC
Q 017069          201 NGAEM-------MACGLATHYSVSEK  219 (378)
Q Consensus       201 ~a~eA-------~~~Glv~~vv~~~~  219 (378)
                      ++++.       ...|++|.++++++
T Consensus       220 ~~e~LGGa~~h~~~sGv~d~va~de~  245 (530)
T 3iav_A          220 GFEELGGARTHNSTSGVAHHMAGDEK  245 (530)
T ss_dssp             CHHHHHBHHHHHHTSCCCSEEESSHH
T ss_pred             ChhhcchHHHHHhccCceeEEecChH
Confidence            98876       68999999998753

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.68  E-value=0.0005  Score=69.18  Aligned_cols=139  Identities=10%  Similarity=0.111  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-++.....+.+..+++.+.+.. +-+|.|.-     |.|+.+.+-.        .....+-+.+....
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~d-----SGGARmqeg~--------~sl~~~~~i~~~~~  172 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGIND-----SGGARIQEGV--------DSLAGYGEVFQRNI  172 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCCBCGGGTH--------HHHHHHHHHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeC-----CCccccCccc--------chhhhHHHHHHHHH
Confidence            5555565555678899999999999999887653 56777766     3444444311        11112211111111


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                       . .+-..|+|++|.|+|.|||......||++|+.++ +.+++.                    |+..-+ ..+|+.+++
T Consensus       173 -~-~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~  229 (531)
T 3n6r_B          173 -M-ASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK-TVTNEQVSA  229 (531)
T ss_dssp             -H-TTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCH
T ss_pred             -H-HhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH-HHhCCccCh
Confidence             1 1245999999999999999988888999999985 665542                    111111 257899999


Q ss_pred             HHH-------HHcCccceecCCCC
Q 017069          203 AEM-------MACGLATHYSVSEK  219 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~~  219 (378)
                      ++.       .+.|++|.++++++
T Consensus       230 E~LGGa~~h~~~sG~~d~v~~~e~  253 (531)
T 3n6r_B          230 EELGGATTHTRKSSVADAAFENDV  253 (531)
T ss_dssp             HHHHBHHHHHHTTSCCSEEESSHH
T ss_pred             hhcchHHHHhhccCcceEEeCCHH
Confidence            998       89999999998754

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.58  E-value=0.001  Score=67.00  Aligned_cols=138  Identities=14%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-++.....+.+..+++.+.++ .+-+|.|..     |+|+.+.+-.        ....++-+.+..+.
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~--------~sl~~~~~i~~~~~  162 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGI--------DSLSGYGKMFFANV  162 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHH--------HHHHHHHHHHHHHH
Confidence            555666655567889999999999999998875 466777776     5566665421        11122222222222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCHH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  203 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  203 (378)
                       .+ .-..|+|+++.|+|.||+......||++|+.+++.+++.                    |+..-+ -.+|+.++.+
T Consensus       163 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~-~~~ge~~~~e  219 (523)
T 1on3_A          163 -KL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIK-SVTGEDVTAD  219 (523)
T ss_dssp             -HH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             -Hh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHH-HHhCCcCChH
Confidence             22 345999999999999999988889999999999887765                    111111 1357777764


Q ss_pred             -----HHH--HcCccceecCCC
Q 017069          204 -----EMM--ACGLATHYSVSE  218 (378)
Q Consensus       204 -----eA~--~~Glv~~vv~~~  218 (378)
                           +.+  +.|++|.+++++
T Consensus       220 ~lggae~h~~~~G~vd~vv~d~  241 (523)
T 1on3_A          220 ELGGAEAHMAISGNIHFVAEDD  241 (523)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSH
T ss_pred             hcccHHHHhhccCceEEEeCCH
Confidence                 323  699999999964

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.48  E-value=0.002  Score=65.01  Aligned_cols=138  Identities=11%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-++.....+.+..+++.+.++ .+-+|.|..     |+|+.+.+-.        .....+-+.+..+.
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~--------~sl~~~~~i~~~~~  158 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGA--------LSLEGYGAVFKMNV  158 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTH--------HHHHHHHHHHHHHH
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHH--------HHHHHHHHHHHHHH
Confidence            555556555467789999999999999998875 466788776     5566665421        11112222222222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-e-EEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCC
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-T-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN  201 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~  201 (378)
                       .+ +-..|.|+++.|+|.||+......||++|+.++ + .+++.           +...+.          -.+|+.++
T Consensus       159 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a-----------GP~vI~----------~~~ge~~~  215 (522)
T 1x0u_A          159 -MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT-----------GPEITK----------VVLGEEVS  215 (522)
T ss_dssp             -HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS-----------CHHHHH----------HTTCCCCC
T ss_pred             -Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec-----------CHHHHH----------HHhCCcCC
Confidence             22 345999999999999999988889999999997 7 66652           111111          14577777


Q ss_pred             HH-----HHH--HcCccceecCCC
Q 017069          202 GA-----EMM--ACGLATHYSVSE  218 (378)
Q Consensus       202 a~-----eA~--~~Glv~~vv~~~  218 (378)
                      .+     +.+  +.|++|.+++++
T Consensus       216 ~e~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          216 FQDLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             HHHHHBHHHHHHTTCCCSEEESCH
T ss_pred             hhhcchHHHHhhcCceeEEEeCCH
Confidence            54     322  699999999964

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.47  E-value=0.0019  Score=65.45  Aligned_cols=136  Identities=13%  Similarity=0.088  Sum_probs=92.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-++.....+.+..+++.+.++ .+-+|.|.-     |.|+.+.+-.        .....+    .+++
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~--------~sl~~~----~~i~  171 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGV--------VSLGLY----SRIF  171 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTT--------HHHHHH----HHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHH--------HHHHHH----HHHH
Confidence            555555555567789999999999999998875 466777776     5566654311        111122    2233


Q ss_pred             HHHh--cCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCC
Q 017069          124 YLLG--THLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL  200 (378)
Q Consensus       124 ~~i~--~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~  200 (378)
                      .++.  +-..|.|+++.|+|.||+......||++|+.++ +.+++.                    |+..-+ -.+|+.+
T Consensus       172 ~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~-~~~ge~v  230 (548)
T 2bzr_A          172 RNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK-TVTGEEV  230 (548)
T ss_dssp             HHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCC
T ss_pred             HHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHH-HHhCCcC
Confidence            3322  344999999999999999988889999999996 877654                    112111 1357777


Q ss_pred             CHH-----HHH--HcCccceecCCC
Q 017069          201 NGA-----EMM--ACGLATHYSVSE  218 (378)
Q Consensus       201 ~a~-----eA~--~~Glv~~vv~~~  218 (378)
                      +.+     +.+  +.|++|.+++++
T Consensus       231 ~~e~lggae~h~~~sG~~d~vv~d~  255 (548)
T 2bzr_A          231 TMEELGGAHTHMAKSGTAHYAASGE  255 (548)
T ss_dssp             CHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             ChHhcccHHHHhhccCceeEEeCCH
Confidence            764     222  699999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.24  E-value=0.0011  Score=66.86  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |++|-.|..-..-+++.+......+.++.+++. .+-+|.|.-.++ |..|.+-             +.......+.+++
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~-------------E~~G~~~~~Ak~l  391 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQ-------------EYKGIIRHGAKML  391 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHH-------------HHTTHHHHHHHHH
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHH-------------HHHHHHHHHHHHH
Confidence            444444332234579999999999999988754 567777766432 3333211             1112233445567


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccc----cCCeEEEeCceEEeccccccCccCCcchHHHHhhc-chH-----H-HHH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L-GEF  192 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~-----~-a~~  192 (378)
                      ..+....+|.|+.|-|.|.|||+....    .+|+++|.+++.+++-       .+-|++..+.+. +-.     . ..+
T Consensus       392 ~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~  464 (522)
T 1x0u_A          392 YAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQ  464 (522)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHH
T ss_pred             HHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHH
Confidence            778889999999999999999764433    4999999988777643       223333333322 110     0 001


Q ss_pred             HHh--cCCCCCHHHHHHcCccceecCCCChh
Q 017069          193 LAL--TGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       193 l~l--tG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      +.-  .-..-++..+.+.|+||.|+++.++.
T Consensus       465 l~~~y~~~~~~~~~~~~~G~iD~II~p~~tR  495 (522)
T 1x0u_A          465 RIAEYRKLFANPYWAAEKGLVDDVIEPKDTR  495 (522)
T ss_dssp             HHHHHHHHHSSSHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHhcCCHHHHHhcCCCcEeECHHHHH
Confidence            110  00123567799999999999987654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.13  E-value=0.0053  Score=61.87  Aligned_cols=138  Identities=15%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.+..-+.-++.....+.+..+++.+.+. .+-+|.|.-.     .|+.+.+-.        .....+-+.+....
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS-----gGAR~qeg~--------~~l~g~~~~~~~~~  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDS-----GGARIQEGV--------DALAGYGEIFLRNT  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-----CSBCGGGTH--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCCCccchh--------HHHHHHHHHHHHHH
Confidence            555666644467789999999999999988765 3556766653     444443211        11112222222222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                        ......|+|++|.|+|.|||......||++|+.++ +.+++.                    |+...+ ..+|+.++.
T Consensus       166 --~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~-~~~ge~v~~  222 (527)
T 1vrg_A          166 --LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIK-AVTGEEISQ  222 (527)
T ss_dssp             --HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCH
T ss_pred             --HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHH-HHhCCCCCc
Confidence              22556999999999999999988889999999987 664431                    111111 135677775


Q ss_pred             H-----HHH--HcCccceecCCC
Q 017069          203 A-----EMM--ACGLATHYSVSE  218 (378)
Q Consensus       203 ~-----eA~--~~Glv~~vv~~~  218 (378)
                      +     +..  +.|++|.+++++
T Consensus       223 e~lggae~~~~~~G~vd~vv~d~  245 (527)
T 1vrg_A          223 EDLGGAMVHNQKSGNAHFLADND  245 (527)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cccccHHHHhhcccceEEEecCH
Confidence            3     222  699999999964

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.03  E-value=0.0023  Score=64.66  Aligned_cols=144  Identities=16%  Similarity=0.108  Sum_probs=93.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++-.|..-+.-++.+.....+..+++.+.+. .+-+|.|.-.|+..     +..-.....  .......    +..-.
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGAR-----l~~q~~~~~--~~~~~~~----i~~~~  190 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGAN-----LPRQDEVFP--DREHFGR----IFFNQ  190 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCBC-----GGGGGGTSS--STTSTTH----HHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCC-----CCCcceeec--ccccHHH----HHHHH
Confidence            555556655567789999999999999998876 35677666544433     211000000  0000011    11122


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC-ceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      ..+.....|+|++|.|+|.|||......||++|+.+ ++.+.+          +          |+...+ ..+|+.+++
T Consensus       191 ~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~----------a----------GP~vik-~~~ge~~~~  249 (555)
T 3u9r_B          191 ANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL----------A----------GPPLVK-AATGEVVSA  249 (555)
T ss_dssp             HHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS----------S----------CHHHHH-HHHCCCCCH
T ss_pred             HHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE----------c----------cHHHHH-HHhcCccCh
Confidence            334557899999999999999999999999998876 454332          1          111111 257899999


Q ss_pred             HHH-------HHcCccceecCCCCh
Q 017069          203 AEM-------MACGLATHYSVSEKL  220 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~~l  220 (378)
                      ++.       ...|++|.++++++.
T Consensus       250 e~LGGa~~h~~~sGv~d~v~~de~~  274 (555)
T 3u9r_B          250 EELGGADVHCKVSGVADHYAEDDDH  274 (555)
T ss_dssp             HHHHBHHHHHHTTCSCSEEESSHHH
T ss_pred             hhccchhhhhhccCceeEEeCCHHH
Confidence            998       789999999987653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.87  E-value=0.011  Score=59.60  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-.++++-.....+.++.+++ ..+-+|.|.-. ..|..|.+-.             .........+++..+....+|+|
T Consensus       343 ~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDt-pG~~~G~~~E-------------~~g~~~~~A~~~~a~~~~~vP~i  407 (527)
T 1vrg_A          343 AGVLDIDSSDKAARFIRFLDA-FNIPILTFVDT-PGYLPGVAQE-------------HGGIIRHGAKLLYAYSEATVPKI  407 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecC-CCCcCchhhH-------------HhHHHHHHHHHHHHHhcCCCCEE
Confidence            357999999999999988764 44566665543 2344443221             11223444567777788999999


Q ss_pred             EEEcceeechhhcccc----cCCeEEEeCceEEeccccccCccCCcchHHHHhhcc-h----HH-H-HHHH--hcCCCCC
Q 017069          135 AILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G----HL-G-EFLA--LTGAKLN  201 (378)
Q Consensus       135 aav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g----~~-a-~~l~--ltG~~~~  201 (378)
                      +.|-|.|.|||+.-..    .+|+++|.+++.++       +.++-|++..+.+.- -    .. . .++.  +.-..-+
T Consensus       408 svI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~  480 (527)
T 1vrg_A          408 TVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFAN  480 (527)
T ss_dssp             EEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSS
T ss_pred             EEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCC
Confidence            9999999988764332    38988888777765       443344444343321 1    11 1 1121  1112356


Q ss_pred             HHHHHHcCccceecCCCChh
Q 017069          202 GAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       202 a~eA~~~Glv~~vv~~~~l~  221 (378)
                      +..+.+.|+||.|+++.+..
T Consensus       481 p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          481 PYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHcCCCCeeeCHHHHH
Confidence            78899999999999986653

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.81  E-value=0.0091  Score=60.12  Aligned_cols=144  Identities=14%  Similarity=0.045  Sum_probs=91.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.++++-.....+.++.++. ..+-+|.|.-. ..|..|.+-.             .....+...+++..+....+|+|+
T Consensus       340 G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E-------------~~Gi~~~~A~~l~a~a~~~vP~it  404 (523)
T 1on3_A          340 GCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQE-------------YGGIIRHGAKMLYAYSEATVPKIT  404 (523)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHH-------------HhhHHHHHHHHHHHHhcCCCCEEE
Confidence            47999999999999988764 45666665543 3455554322             122334456677778889999999


Q ss_pred             EEcceeechhhccccc----CCeEEEeCceEEeccccccCccCCcchHHHHhhcc-hH----H-H-HHHHh--cCCCCCH
Q 017069          136 ILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH----L-G-EFLAL--TGAKLNG  202 (378)
Q Consensus       136 av~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g~----~-a-~~l~l--tG~~~~a  202 (378)
                      .|-|.+.|||+.-...    +|+++|.+++.++       +.++-|++..+.+.- ..    . . .++.-  .-..-++
T Consensus       405 vI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p  477 (523)
T 1on3_A          405 VVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTP  477 (523)
T ss_dssp             EEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSH
T ss_pred             EEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCH
Confidence            9999999988754433    8888887777665       443444444443321 11    1 1 11211  1112566


Q ss_pred             HHHHHcCccceecCCCChh
Q 017069          203 AEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       203 ~eA~~~Glv~~vv~~~~l~  221 (378)
                      ..+.+.|+||.|+++.+..
T Consensus       478 ~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          478 YVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHHHHTTSSSEECCGGGHH
T ss_pred             HHHHhcCCCCEeeCHHHHH
Confidence            7899999999999986653

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.55  E-value=0.016  Score=58.66  Aligned_cols=145  Identities=16%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-.++.+-.....+.++.+++. .+-+|.|.-. ..|..|.+-.+             ....+...+++..+....+|+|
T Consensus       360 ~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~-------------~Gi~~~ga~~l~a~~~~~VP~i  424 (548)
T 2bzr_A          360 AGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEY-------------NGIIRRGAKLLYAYGEATVPKI  424 (548)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHH-------------hhHHHHHHHHHHHHhCCCCCEE
Confidence            3579999999999988888654 4566655543 33555543221             1223334556677788999999


Q ss_pred             EEEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHhhc-chH------H-H---HHHHh--cC
Q 017069          135 AILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH------L-G---EFLAL--TG  197 (378)
Q Consensus       135 aav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~------~-a---~~l~l--tG  197 (378)
                      +.|-|.|.|||+.-.    +.+|+++|.+++.++       +..+-|++..+.+. +..      . +   .++.-  .-
T Consensus       425 svI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~  497 (548)
T 2bzr_A          425 TVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYED  497 (548)
T ss_dssp             EEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHHHHHH
T ss_pred             EEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHH
Confidence            999999999886443    348998888877765       33334444444332 110      1 1   11111  00


Q ss_pred             CCCCHHHHHHcCccceecCCCChh
Q 017069          198 AKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       198 ~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      ..-++..+.+.|+||.|+++.+..
T Consensus       498 ~~~~p~~~a~~g~iD~II~p~~tR  521 (548)
T 2bzr_A          498 TLVNPYVAAERGYVGAVIPPSHTR  521 (548)
T ss_dssp             HHSBSHHHHHTTSSSEECCGGGHH
T ss_pred             hhCCHHHHHhcCCCceeeCHHHHH
Confidence            123557799999999999986653

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.28  E-value=0.051  Score=55.38  Aligned_cols=151  Identities=15%  Similarity=0.092  Sum_probs=97.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-.++++-.....+.++.++. ..+-+|.|.-. ..|..|.+-             +.....+...+++..+..+.+|+|
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~-------------E~~Gi~~~gA~~~~a~a~a~vP~i  448 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDA-------------EKAELLGLGQSLIYSIQTSHIPQF  448 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHH-------------HHTTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHH-------------HHHHHHHHHHHHHHHHHhCCCCEE
Confidence            346999999999999986654 45677777654 345555432             222344556778888999999999


Q ss_pred             EEEcceeechhhccccc-----C--CeEEEeCceEEeccccccCccCCcchHHHHhhcc-hH-----------HH--HHH
Q 017069          135 AILNGVTMGGGAGVSIP-----G--TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH-----------LG--EFL  193 (378)
Q Consensus       135 aav~G~a~GgG~~lal~-----~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g~-----------~a--~~l  193 (378)
                      +.|-|.+.|||+- +++     +  |+++|.+++.++       +..+-|++..+.+.- ..           .+  .++
T Consensus       449 tvI~g~~~Ggg~~-am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~  520 (587)
T 1pix_A          449 EITLRKGTAAAHY-VLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNL  520 (587)
T ss_dssp             EEECSEEETTHHH-HTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             EEEcCCCccHHHH-HhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHH
Confidence            9999999988753 333     5  888888777766       333344443333221 10           00  101


Q ss_pred             Hh-cCCCCCHHHHHHcCccceecCCCChhH-HHHHHh
Q 017069          194 AL-TGAKLNGAEMMACGLATHYSVSEKLPL-IEEELG  228 (378)
Q Consensus       194 ~l-tG~~~~a~eA~~~Glv~~vv~~~~l~~-~~~~l~  228 (378)
                      .- --+..++..|.+.|+||.|+++.+... +..+|+
T Consensus       521 ~~~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~  557 (587)
T 1pix_A          521 IQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTE  557 (587)
T ss_dssp             HHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHH
Confidence            00 012478899999999999999877643 334443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.23  E-value=0.039  Score=56.14  Aligned_cols=161  Identities=12%  Similarity=0.017  Sum_probs=93.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++-.|..-+.-++.+...+.+.++++.+.+.. +-+|.|.-.|+     +.+.+-.... . ......+.+    .-.
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgG-----Arl~~qe~~~-~-~l~~~g~if----~~~  175 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSG-----VEFPNQDKVY-P-NRRGGGTPF----FRN  175 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCC-----BCGGGHHHHS-S-STTSTTHHH----HHH
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cCcccccccc-c-chhhHHHHH----HHH
Confidence            4555555544667888999999999999887653 56777766444     3332100000 0 000001111    112


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecccccc--CccCCcchHHHHhhc---chHH-HHHHHhcC
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI--GFHPDAGASFYLSHL---PGHL-GEFLALTG  197 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~--Gl~p~~g~~~~l~r~---~g~~-a~~l~ltG  197 (378)
                      ..+....+|+|++|.|+|.|||.-.++++|++++.+++.+.+.-..+  |+.|.+   .+.+.-   +... ..+-..+.
T Consensus       176 ~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~~vs~  252 (588)
T 3gf3_A          176 SELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENSKLKV  252 (588)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc---cccccchhhhhhhhccccccCh
Confidence            33445689999999999999988668888888888898888754331  211110   001110   1111 12222467


Q ss_pred             CCCCHHHHH--HcCccceecCCCC
Q 017069          198 AKLNGAEMM--ACGLATHYSVSEK  219 (378)
Q Consensus       198 ~~~~a~eA~--~~Glv~~vv~~~~  219 (378)
                      +.+.+.+..  ..|++|.++++++
T Consensus       253 eeLGGa~~h~~~sGv~d~~a~de~  276 (588)
T 3gf3_A          253 PAPGSVPIHYDETGFFREVYQNDL  276 (588)
T ss_dssp             CCTTBHHHHTTTSCCSCEEESSHH
T ss_pred             hhccchhhhccccccceEEeCCHH
Confidence            778777777  5899999998764

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.22  E-value=0.032  Score=56.06  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=94.8

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 017069           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (378)
Q Consensus        47 Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (378)
                      |.=|+|. ..-.++.+-.....+.++.++. ..+-+|.|.-.. .|..|.+-             +.....+...+++..
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtp-Gf~~G~~~-------------E~~Gi~~~gAk~l~a  406 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVP-GFLPGTSQ-------------EYGGVIKHGAKLLYA  406 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-SBCCSHHH-------------HHTTHHHHHHHHHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCC-CCCCCHHH-------------HHhhHHHHHHHHHHH
Confidence            3344443 2347999999999998887765 346676665432 34444332             222335556778888


Q ss_pred             HhcCCCcEEEEEcceeechhhcccc----cCCeEEEeCceEEeccccccCccCCcchHHHHhh-cch----H-H-HHHHH
Q 017069          126 LGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----H-L-GEFLA  194 (378)
Q Consensus       126 i~~~~kP~Iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g----~-~-a~~l~  194 (378)
                      +....+|+|+.|-|.+.|||+.-..    .+|+++|.+++.++       +.++-|++..+.+ -+.    . . ..++ 
T Consensus       407 ~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y-  478 (531)
T 3n6r_B          407 YGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADY-  478 (531)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHH-
T ss_pred             HHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHH-
Confidence            8999999999999999998864333    38999888777665       3333344333332 111    1 1 1111 


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChh
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                       .-+.-++-.|.+.|+||.|+++.+..
T Consensus       479 -~~~~~~p~~aa~~~~vD~vIdP~~TR  504 (531)
T 3n6r_B          479 -EERFANPFVASERGFVDEVIQPRSTR  504 (531)
T ss_dssp             -HHHHSSSHHHHHHTSSSEECCGGGHH
T ss_pred             -HHHhcCHHHHHhcCccCcccCHHHHH
Confidence             11223556788999999999987754

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.13  E-value=0.065  Score=53.89  Aligned_cols=152  Identities=16%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHH
Q 017069           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (378)
Q Consensus        47 Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (378)
                      |.=|+|. ..-.++++......+.++.++.. .+-+|.|.-..+ |..|.+-.             .....+...+++..
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E-------------~~gi~~~~Ak~l~a  400 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQE-------------HDGIIRRGAKLIFA  400 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHH-------------HTTHHHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHH-------------HhhHHHHHHHHHHH
Confidence            3444543 23579999999999999877754 466776655432 65554321             23345566778888


Q ss_pred             HhcCCCcEEEEEcceeechhhccccc-----CCeEEEeCceEEeccccccCccCCcchHHHHhhc-ch------HH-HHH
Q 017069          126 LGTHLKPHVAILNGVTMGGGAGVSIP-----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG------HL-GEF  192 (378)
Q Consensus       126 i~~~~kP~Iaav~G~a~GgG~~lal~-----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g------~~-a~~  192 (378)
                      +....+|+|+.|-|.+.|||+ ++++     +|+++|.+++.++       +.++-|++..+.+. +-      .. -.+
T Consensus       401 ~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~-------Vm~~egaa~il~r~~~~~~~~d~~~~~~~  472 (530)
T 3iav_A          401 YAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIA-------VMGAQGAVNILHRRTIADAGDDAEATRAR  472 (530)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTSTTTSTTCTTCHHHHHH
T ss_pred             HHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEe-------cCCHHHHHHHHhhhhhhhcccCHHHHHHH
Confidence            899999999999999998776 3333     7999888887766       33333333333221 10      00 111


Q ss_pred             HH--hcCCCCCHHHHHHcCccceecCCCChh
Q 017069          193 LA--LTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       193 l~--ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      +.  +.-+.-++..|.+.|+||.|+++.+..
T Consensus       473 ~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR  503 (530)
T 3iav_A          473 LIQEYEDALLNPYTAAERGYVDAVIMPSDTR  503 (530)
T ss_dssp             HHHHHHHHHSSSHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHhcCCHHHHHhcCCCCcccCHHHHH
Confidence            11  111123667788999999999987754

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=94.33  E-value=0.56  Score=47.29  Aligned_cols=144  Identities=10%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.++.+-.....+.++.++. ..+-+|.|.-.+ .|..|.+-.             .....+...+++..+....+|+|+
T Consensus       366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp-Gf~~G~~~E-------------~~Gi~~~gAk~~~a~~~a~vP~it  430 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNIT-GFMVGQKYE-------------AGGIAKHGAKLVTAVACARVPKFT  430 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEEC-CBCCSHHHH-------------HTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCc-CCCCCHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEE
Confidence            57899999998888888765 346777776543 355554321             122344566778889999999999


Q ss_pred             EEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHhhc-------ch----H-H--HH--HHH-
Q 017069          136 ILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-------PG----H-L--GE--FLA-  194 (378)
Q Consensus       136 av~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-------~g----~-~--a~--~l~-  194 (378)
                      .|-|.++|||..-.    +.+|+++|.+++.++.       ..+-|++..|...       .|    . .  +.  ++. 
T Consensus       431 vi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  503 (555)
T 3u9r_B          431 VLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILE  503 (555)
T ss_dssp             EEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             EEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHH
Confidence            99999998864322    3479999888777763       3333333333210       00    0 0  00  000 


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChh
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      .--+..++-.|-+.|+||.|+++.+..
T Consensus       504 ~y~~~~~p~~aa~r~~vD~vIdP~~TR  530 (555)
T 3u9r_B          504 QYEHQGHPYYSSARLWDDGVIDPAQTR  530 (555)
T ss_dssp             HHHHHHSHHHHHHTTSSSCBCCGGGHH
T ss_pred             HHHHhCCHHHHhhccccCcccChHHHH
Confidence            001124666777899999999987753

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=92.61  E-value=1.2  Score=45.22  Aligned_cols=140  Identities=13%  Similarity=0.128  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.++++-...-.+.++.++.. ++-+|.|.-. ..|..|.+-.             .....+...+++..+..+.+|+|+
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pGf~~G~~aE-------------~~Gi~~~gAk~l~a~a~a~VP~it  451 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TGIDVGDEAE-------------KAELLGLGQSLIYSIENSKLPSLE  451 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CCCCCCHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEE
Confidence            468899999999988888764 5677777654 3465554322             223455566788889999999999


Q ss_pred             EEcceeechhhcccccC-------CeEEEeCceEEeccccccCccCCcchHHHHh-hcchH----------------H-H
Q 017069          136 ILNGVTMGGGAGVSIPG-------TFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGH----------------L-G  190 (378)
Q Consensus       136 av~G~a~GgG~~lal~~-------D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~g~----------------~-a  190 (378)
                      .|-|.+.|||. +++++       |+++|.+++.++       +.++-|++..+. +.+..                . .
T Consensus       452 vI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (588)
T 3gf3_A          452 ITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI  523 (588)
T ss_dssp             EESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred             EEcCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHH
Confidence            99999988876 33332       377777766655       443334433333 21110                0 1


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      .++-   +..++--|-+.|+||.|+++.+..
T Consensus       524 ~~y~---~~~~p~~aA~r~~vD~VIdP~~TR  551 (588)
T 3gf3_A          524 QMYT---DKSRPKYCTEKGMVDEIVDMTEVR  551 (588)
T ss_dssp             HHHH---HTTSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHH---HhCCHHHHHhcCCCCeeeCHHHHH
Confidence            1111   135788889999999999987753

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=91.75  E-value=0.083  Score=54.90  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcceeechhhcccccCCeEEEeCceEE
Q 017069          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF  163 (378)
Q Consensus       129 ~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f  163 (378)
                      ...|+|+.|.|+|.|||..+...||++|+.+++.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~i  279 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  279 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceE
Confidence            56899999999999999999999999999998643

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.05  E-value=0.16  Score=53.27  Aligned_cols=37  Identities=11%  Similarity=0.075  Sum_probs=33.5

Q ss_pred             CCCcEEEEEcceeechhhcccccCCeEEEeCceEEec
Q 017069          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT  165 (378)
Q Consensus       129 ~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~  165 (378)
                      ...|+|+.|.|+|.|||..++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            4699999999999999999999999999999876554

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=88.46  E-value=1.2  Score=46.25  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.++++-.....+.++.++....+-+|.|.-. ..|..|.+-             +.....+...+++..+..+.+|+|+
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pGf~~G~~a-------------E~~Gi~k~gAkll~A~a~a~VP~it  512 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRD-------------MFNEVLKYGSFIVDALVDYKQPIII  512 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CEECCSHHH-------------HHTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CCCCCCHHH-------------HHccHHHHHHHHHHHHHhCCCCEEE
Confidence            46889999999999998887455667666543 456666432             2223455667788889999999999


Q ss_pred             EEc--ceeechhhccccc----CCe--EEEeCceEEeccccccCccCCcchHHHH
Q 017069          136 ILN--GVTMGGGAGVSIP----GTF--RVACGKTVFATPETLIGFHPDAGASFYL  182 (378)
Q Consensus       136 av~--G~a~GgG~~lal~----~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  182 (378)
                      .|-  |-+.||++ ++++    +|+  ++|.++|.+       |+.++-|++..+
T Consensus       513 VI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~i-------sVM~pEgaa~Il  559 (758)
T 3k8x_A          513 YIPPTGELRGGSW-VVVDPTINADQMEMYADVNARA-------GVLEPQGMVGIK  559 (758)
T ss_dssp             EECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEE-------ESSCHHHHHHHH
T ss_pred             EEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEE-------EccCHHHHHHHH
Confidence            998  99988877 4444    555  666655555       454444444433

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=86.27  E-value=5.2  Score=41.90  Aligned_cols=94  Identities=13%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.++++-.....+.++.++. ..+-+|.|.-. ..|..|.+-             +.....+...+++..+..+.+|+|+
T Consensus       462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~a-------------E~~Gi~~~gAkll~A~a~a~VP~it  526 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKD-------------MYDQVLKFGAYIVDGLRKYRQPVLI  526 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHH-------------HHTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHH-------------HHhhHHHHHHHHHHHHHhcCCCEEE
Confidence            46899999999999999864 45667766543 446665432             2223455567788889999999999


Q ss_pred             EE--cceeechhhccc---ccCCe--EEEeCceEEe
Q 017069          136 IL--NGVTMGGGAGVS---IPGTF--RVACGKTVFA  164 (378)
Q Consensus       136 av--~G~a~GgG~~la---l~~D~--~ia~~~a~f~  164 (378)
                      .|  .|-+.||++.++   +..|+  ++|.+++.++
T Consensus       527 vI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~  562 (793)
T 2x24_A          527 YIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRAS  562 (793)
T ss_dssp             EECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEE
T ss_pred             EEecCCcccchhHHhhhcccCccHHHHhhhccCEEE
Confidence            99  898887765433   34566  5666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	2e-27
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	2e-18
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	6e-15
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	7e-14
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-13
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	8e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-10
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	9e-10
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	1e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	7e-07
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	8e-07
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-05
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	2e-05
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	6e-05
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (266), Expect = 2e-27
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                 +     S    +    KP +A +NG  +GGG  +++      A  K  F  PE 
Sbjct: 78  --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
           L+G  P AG +  L+   G  L   + LTG +++  +    G
Sbjct: 136 LLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 1/167 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LN P   N L+  M   L +     E DP +  V + G G+AF AG D+  L      G
Sbjct: 13  FLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELG 72

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E
Sbjct: 73  A-EENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTE 131

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
             IGF     +   +  +     + L LTG  +   E  A GL    
Sbjct: 132 VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.1 bits (175), Expect = 6e-15
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 109 L-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                      +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH 188
            F   E  +G   D G    L  + G+
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGN 165

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 7e-14
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 3/170 (1%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR    N+L+ N+   L+K   A ++D  +  + ++         G          +  
Sbjct: 21  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGAD---LKERAKMS 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             E   F   + + I  +     P +A ++G+ +GGG  +++    RVA         ET
Sbjct: 78  SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET 137

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSE 218
            +   P  G +  L    G       +  A++   +         + + +
Sbjct: 138 KLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           + NRP   NA+NT M  ++ +  KA   D +I  V + G+G  + +G D+ +       G
Sbjct: 17  MFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGG 75

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP 
Sbjct: 76  VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF 135

Query: 168 TLIGFHPDAGASFYLSH 184
           + +G  P+  +S+    
Sbjct: 136 SHLGQSPEGCSSYTFPK 152

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.2 bits (152), Expect = 8e-12
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
            NRP   NA   +   +L ++       P++G V + G+G +   GG             
Sbjct: 35  FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94

Query: 106 -----------QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
                         ++  +     +     L+    K  + ++NG   G
Sbjct: 95  RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAG 143

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 9/181 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P  LNAL       L +L +  + + ++ F  ++ SGR F +G D   +        
Sbjct: 20  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 79

Query: 109 LEECK-------DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            +          +F             H K  +  LNG  +G  A +        +    
Sbjct: 80  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 139

Query: 162 VFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
           V+             G +     L    +      +         M   G  +       
Sbjct: 140 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 199

Query: 220 L 220
            
Sbjct: 200 S 200

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 56.7 bits (135), Expect = 9e-10
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QG 107
           +  P   NAL+     ++       E D ++G V + G+  AFCAG  +  +       G
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             +  +      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137

Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             IG   D   S+ L+ + G 
Sbjct: 138 HTIGIGNDTATSYSLARIVGM 158

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 49/315 (15%), Positives = 96/315 (30%), Gaps = 33/315 (10%)

Query: 50  NRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109
            +  ++N  N     +L +   A + D ++  V +      F  G DI            
Sbjct: 24  LKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDA 83

Query: 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 169
           E                     P VA +NG+ +GGG  + +   FRV         PE  
Sbjct: 84  ELI-AGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK 142

Query: 170 IGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229
           +G +P  G +  L  L G                +     +A+      +  L    +  
Sbjct: 143 LGIYPGFGGTVRLPRLIGV---------------DNAVEWIASGKENRAEDALKVSAVDA 187

Query: 230 LVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDP 289
           +VT D  +  A L+     +  + +    R   ++K                E  +  + 
Sbjct: 188 VVTAD-KLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAI----------EQMMAFET 236

Query: 290 WCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR 349
             G          P  ++  +++I++      D+ L  E     +      +      + 
Sbjct: 237 AKGFVAGQAGPNYPAPVEA-IKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCLIG 292

Query: 350 ARMVDRDIA--PKVP 362
             + D+++    KV 
Sbjct: 293 LFLNDQELKKKAKVY 307

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 1/167 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           +  R +  NALNT +  ++     +   D +   +         C       + H  N  
Sbjct: 17  LSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDR 76

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                 +   T+ +F+       KP V  +NG  +G GA +        A  K  F TP 
Sbjct: 77  N-TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPY 135

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
           T  G  PD  +S     + G       L   +   A           
Sbjct: 136 TTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 182

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 35  QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
           +VLVE  A + +A+     P  +N+L+     +L    +  END +   V +        
Sbjct: 3   RVLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLY 120
           + G  ++     +           + L+
Sbjct: 62  SAGLDLTEMCGRSPAHYAGYWKAVQELW 89

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 7/58 (12%), Positives = 20/58 (34%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
           L+ P+  N  +  +   +         D ++  V + G      + G   +    +++
Sbjct: 15  LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR 72

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + +E      +  ++         +    +L   F     D     V + G+G +FC   
Sbjct: 15  IRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEI 74

Query: 96  DIVSLYHFMNQGKLEECKDFFR 117
           D  S          E   +  R
Sbjct: 75  DFTSFNLGTPHDWDEIIFEGQR 96

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           I  R   LNA+   +   L ++++  E    +  V ++G G  F AGG    +       
Sbjct: 23  ITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASH 82

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +       F      +       +P VA +  V +G 
Sbjct: 83  E--ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGA 117

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 9/58 (15%), Positives = 15/58 (25%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
            N    LNAL+      L +             +    SG    + G  +       +
Sbjct: 19  FNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGR 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.23
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.22
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.09
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.03
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.89
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.75
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.73
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.56
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.53
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.53
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.46
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.18
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.89
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.83
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.66
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.27
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.88
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	93.64
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	82.43

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-56  Score=416.85  Aligned_cols=255  Identities=24%  Similarity=0.332  Sum_probs=232.5

Q ss_pred             CCCceEEEee---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCC
Q 017069           32 LCNQVLVEGK---ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        32 ~~~~v~~~~~---~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      .|+.|.++++   ++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++...    .
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~----~   77 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T   77 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhcc----c
Confidence            4789999986   48999999999999999999999999999999999999999999999999999999987531    1


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                        ....+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~  155 (260)
T d1mj3a_          78 --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK  155 (260)
T ss_dssp             --HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred             --hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCH
Confidence              122344556677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +.+++++|++++|+||+++|||++|++++++.+...                                          
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~------------------------------------------  193 (260)
T d1mj3a_         156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI------------------------------------------  193 (260)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCcccCchhhccCCCceeeecccccccccc------------------------------------------
Confidence            8 999999999999999999999999999998853222                                          


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                               ++++++++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||
T Consensus       194 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~eg  245 (260)
T d1mj3a_         194 -------------------------QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREG  245 (260)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHH
T ss_pred             -------------------------cccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     358899999999999999999999999999999999999999998   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      |++|+ || |+|+|+++
T Consensus       246 i~aFl-eK-R~P~f~~~  260 (260)
T d1mj3a_         246 MSAFV-EK-RKANFKDH  260 (260)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHh-CC-CCCCCCCC
Confidence            99999 98 99999864

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-56  Score=412.65  Aligned_cols=256  Identities=20%  Similarity=0.246  Sum_probs=236.2

Q ss_pred             CCceEEEeeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHH
Q 017069           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (378)
                      |+.|.++++++|++|++| ||++.|+||.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++...........
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccch
Confidence            678999999999999997 79999999999999999999999987 4699999999999999999999876544444445


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-H
Q 017069          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (378)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (378)
                      ..++...+++++..+.++||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a  159 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA  159 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence            567778889999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCC
Q 017069          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (378)
Q Consensus       191 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  270 (378)
                      .+|++||++++|++|+++||||+|||++++.+...                                             
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  194 (258)
T d2fw2a1         160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM---------------------------------------------  194 (258)
T ss_dssp             HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHH---------------------------------------------
T ss_pred             chhhccCcccccccccccccccccccccccccccc---------------------------------------------
Confidence            99999999999999999999999999998753222                                             


Q ss_pred             CHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhh
Q 017069          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRA  350 (378)
Q Consensus       271 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~a  350 (378)
                                            +++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++|||++
T Consensus       195 ----------------------~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~Egi~a  249 (258)
T d2fw2a1         195 ----------------------IQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQGIESMLK  249 (258)
T ss_dssp             ----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------hhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  358899999999999999999999888899999999999999987   9999999999


Q ss_pred             hhcCCCCCCCC
Q 017069          351 RMVDRDIAPKV  361 (378)
Q Consensus       351 fl~ek~r~P~~  361 (378)
                      |+ || |+|+|
T Consensus       250 f~-EK-R~p~f  258 (258)
T d2fw2a1         250 YV-EN-KIDEF  258 (258)
T ss_dssp             HH-HS-SCCCC
T ss_pred             Hh-CC-CCCCC
Confidence            99 98 99998

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.1e-55  Score=413.15  Aligned_cols=266  Identities=21%  Similarity=0.270  Sum_probs=237.8

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhc-cCChH
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLE  110 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~~~~~  110 (378)
                      ||+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++++..... ....+
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999998742110 01112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++|||||++++++|++||.++|+.|++|+++++++++|.. 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~  160 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence            2333445577899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      ++++++||+.++|+||+++||||+|++++++.+..                                             
T Consensus       161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------  195 (269)
T d1nzya_         161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVA---------------------------------------------  195 (269)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHH---------------------------------------------
T ss_pred             hhhccccccccchhHHHHcCCccccccccccccch---------------------------------------------
Confidence            99999999999999999999999999987764322                                             


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVR  349 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~  349 (378)
                                            .+++++|++.||.+++.+|+.+++....+++++++.|.+.+...+.   ++|++|||+
T Consensus       196 ----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~e~v~  250 (269)
T d1nzya_         196 ----------------------WKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLT  250 (269)
T ss_dssp             ----------------------HHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHH
T ss_pred             ----------------------hhhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                  2358899999999999999999999999999999999999999998   999999999


Q ss_pred             hhhcCCCCCCCCCCCCCCCCC
Q 017069          350 ARMVDRDIAPKVPFHLSLPKG  370 (378)
Q Consensus       350 afl~ek~r~P~~~~~~~~~~~  370 (378)
                      +|+ || |+|+|. +..+|.|
T Consensus       251 afl-ek-rkp~~~-~~~~~~~  268 (269)
T d1nzya_         251 RFL-DG-HRADRP-QVELPAG  268 (269)
T ss_dssp             HHH-TT-CCTTCC-SSCCCCC
T ss_pred             HHH-CC-CCCCcC-CCCCCCC
Confidence            999 98 999994 3455543

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-55  Score=408.65  Aligned_cols=257  Identities=17%  Similarity=0.213  Sum_probs=233.0

Q ss_pred             ccCCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCC
Q 017069           30 DDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (378)
Q Consensus        30 ~~~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (378)
                      ...|+.+.++. ++||++||| ||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....  ..
T Consensus         5 ~~~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~--~~   81 (263)
T d1wz8a1           5 EARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMR--AS   81 (263)
T ss_dssp             HHHCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHH--HC
T ss_pred             ccCCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhc--cc
Confidence            34577888987 678999999 788999999999999999999999999999999999999999999999986542  23


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchH
Q 017069          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      .+....++...++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~  161 (263)
T d1wz8a1          82 HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGM  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCH
T ss_pred             ccccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45566777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +.+|+++|++++|+||+++||||+|||++++.+                                             
T Consensus       162 ~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~---------------------------------------------  196 (263)
T d1wz8a1         162 AKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYE---------------------------------------------  196 (263)
T ss_dssp             HHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHH---------------------------------------------
T ss_pred             chhhhhcccccccchhHHHhcCCcccccchhhhhH---------------------------------------------
Confidence            9 999999999999999999999999999887753                                             


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                            .+.+++++|++.||.+++.+|+++++...... +.++.|.......+.   ++|++||
T Consensus       197 ----------------------~a~~~a~~la~~~~~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~---s~d~~Eg  250 (263)
T d1wz8a1         197 ----------------------KALEVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFS---GKELEEG  250 (263)
T ss_dssp             ----------------------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGG---SHHHHHH
T ss_pred             ----------------------HHHHHHHHhhccHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHcc---CHHHHHH
Confidence                                  22346899999999999999999998877555 458889888888887   9999999


Q ss_pred             HhhhhcCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVP  362 (378)
Q Consensus       348 v~afl~ek~r~P~~~  362 (378)
                      ++||+ || |+|+|.
T Consensus       251 i~Af~-eK-R~P~f~  263 (263)
T d1wz8a1         251 LKALK-EK-RPPEFP  263 (263)
T ss_dssp             HHHHH-TT-SCCCCC
T ss_pred             HHHHh-CC-CCCCCC
Confidence            99999 99 999995

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-55  Score=407.24  Aligned_cols=252  Identities=21%  Similarity=0.264  Sum_probs=232.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      ++||++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++.+..    ........+...+
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~----~~~~~~~~~~~~~   88 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAK----MSSSEVGPFVSKI   88 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTT----SCHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccccccccccc----ccchhhhhhhhHH
Confidence            467999999999999999999999999999999999999999999998 68999999998764    2345556777888


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCC
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (378)
                      +.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +.++++||+
T Consensus        89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHHHHHH
Q 017069          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (378)
Q Consensus       199 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~  278 (378)
                      .++|++|+++||||+|||++++.+...                                                     
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~-----------------------------------------------------  195 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  195 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHH-----------------------------------------------------
Confidence            999999999999999999988743111                                                     


Q ss_pred             HHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcCCCCC
Q 017069          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVDRDIA  358 (378)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~ek~r~  358 (378)
                                ++|.++++++++.||.+++.+|++++++...++.++++.|...+..++.   ++|++||++||+ || |+
T Consensus       196 ----------~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~-eK-R~  260 (266)
T d1hzda_         196 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFK-EK-RP  260 (266)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHT-TT-SC
T ss_pred             ----------HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-CC-CC
Confidence                      2444578999999999999999999999999999999999999999887   999999999999 98 99


Q ss_pred             CCCCCC
Q 017069          359 PKVPFH  364 (378)
Q Consensus       359 P~~~~~  364 (378)
                      |+|++|
T Consensus       261 P~f~Gk  266 (266)
T d1hzda_         261 PRYKGE  266 (266)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999986

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.8e-54  Score=401.27  Aligned_cols=261  Identities=20%  Similarity=0.243  Sum_probs=232.4

Q ss_pred             CCCceEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCCh-
Q 017069           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL-  109 (378)
Q Consensus        32 ~~~~v~~~~-~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~-  109 (378)
                      .|+.+.++. +++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|+.++......... 
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            478888864 789999999999999999999999999999999999999999999999999999999998765333211 


Q ss_pred             ------HHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHh
Q 017069          110 ------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS  183 (378)
Q Consensus       110 ------~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  183 (378)
                            .....+...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~  160 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             cccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccc
Confidence                  12334455677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchHH--HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHH
Q 017069          184 HLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (378)
Q Consensus       184 r~~g~~--a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (378)
                      +++|..  +.+++++|+.++|+||+++||||+|+|+++..  ..                                    
T Consensus       161 ~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l--~~------------------------------------  202 (275)
T d1dcia_         161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVM--LN------------------------------------  202 (275)
T ss_dssp             GTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHH--HH------------------------------------
T ss_pred             cccccccccccccccccccchhhhccCCCceeeeehhhhh--hh------------------------------------
Confidence            999954  56899999999999999999999999976542  11                                    


Q ss_pred             HHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCC
Q 017069          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (378)
Q Consensus       262 ~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  341 (378)
                                                  .+.+++++|++.+|.+++.+|+.++++...+++++++.|.+.+..++.   +
T Consensus       203 ----------------------------~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~  251 (275)
T d1dcia_         203 ----------------------------AAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             ----------------------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             ----------------------------cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---C
Confidence                                        112368899999999999999999999999999999999999999987   9


Q ss_pred             CcHHhhHhhhhcCCCCCCCCCC
Q 017069          342 GDFYEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       342 ~d~~egv~afl~ek~r~P~~~~  363 (378)
                      +|++|||+||+ || |+|+|..
T Consensus       252 ~d~~Egi~Afl-eK-R~pk~~~  271 (275)
T d1dcia_         252 QDIIKSVQAAM-EK-KDSKSIT  271 (275)
T ss_dssp             HHHHHHHHHHH-TT-CCGGGCC
T ss_pred             HHHHHHHHHHh-CC-CCCCCCC
Confidence            99999999999 99 9999986

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-53  Score=395.47  Aligned_cols=251  Identities=25%  Similarity=0.299  Sum_probs=228.9

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (378)
                      |.+++ |+|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++.+.... .........+
T Consensus         2 v~ie~-G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~-~~~~~~~~~~   79 (253)
T d1uiya_           2 VQVEK-GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVT-ELGAEENYRH   79 (253)
T ss_dssp             EEEEC-SSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHT-TSCHHHHHHH
T ss_pred             EEEee-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcc-ccCcccccch
Confidence            45653 789999999999999999999999999999999999999999999999999999999886543 2344455666


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHH
Q 017069          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (378)
Q Consensus       116 ~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (378)
                      ....+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|. |++++|++++|.. |++|+
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~  158 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred             hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence            777888999999999999999999999999999999999999999999999999998875 6688899999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHHH
Q 017069          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (378)
                      +||++++|+||+++||||+|++++++.+.                                                   
T Consensus       159 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~---------------------------------------------------  187 (253)
T d1uiya_         159 LTGRLVEAREAKALGLVNRIAPPGKALEE---------------------------------------------------  187 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHH---------------------------------------------------
T ss_pred             hcCcCCCHHHHHHhCCCcccccccccchh---------------------------------------------------
Confidence            99999999999999999999999988532                                                   


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhHhhhhcC
Q 017069          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGVRARMVD  354 (378)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv~afl~e  354 (378)
                                      +.++++++++.+|.+++.+|+++++....+++++++.|.+.+..++.   ++|++||+++|+ |
T Consensus       188 ----------------a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~af~-e  247 (253)
T d1uiya_         188 ----------------AKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFF-E  247 (253)
T ss_dssp             ----------------HHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHH-T
T ss_pred             ----------------HHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHh-C
Confidence                            22468999999999999999999999999999999999999999887   999999999999 9


Q ss_pred             CCCCCCC
Q 017069          355 RDIAPKV  361 (378)
Q Consensus       355 k~r~P~~  361 (378)
                      | |+|+|
T Consensus       248 K-R~P~f  253 (253)
T d1uiya_         248 K-RPPRF  253 (253)
T ss_dssp             T-SCCCC
T ss_pred             C-CCCCC
Confidence            8 99998

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-54  Score=400.02  Aligned_cols=254  Identities=19%  Similarity=0.223  Sum_probs=220.2

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--CCCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--GRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~--g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      |+.|.++.+|+|++||||||++.|+||.+|+.+|.++|+++++ +++++|||+|.  |++||+|+|++++.....+.   
T Consensus         3 ~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~---   78 (261)
T d1ef8a_           3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP---   78 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT---
T ss_pred             CCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc---
Confidence            5789999999999999999999999999999999999999974 57999999986  47999999999886432111   


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                        ..+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        79 --~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          79 --LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             --TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             --cccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence              12334567788999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  269 (378)
                      +.+++++|+.++|+||+++||||+|++++++.+.                                              
T Consensus       157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~----------------------------------------------  190 (261)
T d1ef8a_         157 VKELIFTASPITAQRALAVGILNHVVEVEELEDF----------------------------------------------  190 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHH----------------------------------------------
T ss_pred             cccccccCceEcHHHHHHcCCcceeeechhhhhh----------------------------------------------
Confidence            9999999999999999999999999998776432                                              


Q ss_pred             CCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF--DECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       270 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~--~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                           +.+++++|++.+|.+++.+|++++...+...  ...++.+......++.   ++|++||
T Consensus       191 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~D~~Eg  246 (261)
T d1ef8a_         191 ---------------------TLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             ---------------------HHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ---------------------hHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                 2246899999999999999999998765443  4455555566666676   9999999


Q ss_pred             HhhhhcCCCCCCCCCCC
Q 017069          348 VRARMVDRDIAPKVPFH  364 (378)
Q Consensus       348 v~afl~ek~r~P~~~~~  364 (378)
                      |+||+ || |+|+|+++
T Consensus       247 i~Afl-eK-R~P~f~G~  261 (261)
T d1ef8a_         247 MNAFL-EK-RKPNFVGH  261 (261)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHh-CC-CCCcCCCC
Confidence            99999 99 99999974

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.4e-51  Score=387.04  Aligned_cols=259  Identities=16%  Similarity=0.192  Sum_probs=210.2

Q ss_pred             CCCceEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCChhhHHH
Q 017069           32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYH  102 (378)
Q Consensus        32 ~~~~v~~~~--~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-------~~F~~G~Dl~~~~~  102 (378)
                      .+..|.|++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|       +.||+|.|++....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            345677875  589999999999999999999999999999999999999999999984       56777777766542


Q ss_pred             hhcc-------CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccC
Q 017069          103 FMNQ-------GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHP  174 (378)
Q Consensus       103 ~~~~-------~~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p  174 (378)
                      ....       ...+........+..++..|..+||||||+|||+|+|||++|+++||+||++++ +.|++||+++|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p  175 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  175 (297)
T ss_dssp             ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence            2110       111122233344667888999999999999999999999999999999999875 57999999999999


Q ss_pred             CcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCC
Q 017069          175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  253 (378)
Q Consensus       175 ~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (378)
                      ++|++++|+|++|.. +.++++||+.++|+||+++||||+|+|++++++...                            
T Consensus       176 ~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~----------------------------  227 (297)
T d1q52a_         176 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL----------------------------  227 (297)
T ss_dssp             CSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHH----------------------------
T ss_pred             ccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHH----------------------------
Confidence            999999999999999 999999999999999999999999999988753222                            


Q ss_pred             chhhhHHHHHHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 017069          254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL  333 (378)
Q Consensus       254 ~~~~~~~~~~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~  333 (378)
                                                             ++++++++.+|.+++.+|++++... ..+.+....+.+.+.
T Consensus       228 ---------------------------------------~~a~~l~~~~~~a~~~~K~~~~~~~-~~~~~~~~~~~~~~~  267 (297)
T d1q52a_         228 ---------------------------------------QWAAEINAKSPQAQRMLKFAFNLLD-DGLVGQQLFAGEATR  267 (297)
T ss_dssp             ---------------------------------------HHHHHHHTSCHHHHHHHHHHHHHTT-THHHHHHHHHHHHHH
T ss_pred             ---------------------------------------HHhhhhccCCHHHHHHHHHHHHHhh-cChHHHHHHHHHHHH
Confidence                                                   3589999999999999999998754 345555556667776


Q ss_pred             HccccCCCCcHHhhHhhhhcCCCCCCCCCC
Q 017069          334 QGVSRLISGDFYEGVRARMVDRDIAPKVPF  363 (378)
Q Consensus       334 ~~~~~~~~~d~~egv~afl~ek~r~P~~~~  363 (378)
                      .++.   ++|++|||+||+ || |+|+|++
T Consensus       268 ~~~~---s~d~~Egv~AF~-eK-R~P~f~~  292 (297)
T d1q52a_         268 LAYM---TDEAVEGRDAFL-QK-RPPDWSP  292 (297)
T ss_dssp             HHHT---SHHHHHHHHHHH-TT-SCCCCTT
T ss_pred             HHhc---CHHHHHHHHHHh-CC-CCCCCCC
Confidence            7776   999999999999 99 9999964

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=373.98  Aligned_cols=242  Identities=21%  Similarity=0.269  Sum_probs=215.8

Q ss_pred             CCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHH
Q 017069           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (378)
Q Consensus        33 ~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (378)
                      |+.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|++++............
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA   80 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence            67899999999999999999999999999999999999999999877 89999999999999999998654222222334


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HH
Q 017069          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (378)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (378)
                      ......+++++.++.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~  160 (245)
T d2f6qa1          81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence            45556678899999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  271 (378)
                      +++++|+.++|+||+++||||+|+|++++++...                                              
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  194 (245)
T d2f6qa1         161 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW----------------------------------------------  194 (245)
T ss_dssp             HHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHH----------------------------------------------
T ss_pred             hhcccccccccccccccccccccCCcchHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988854222                                              


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHH
Q 017069          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (378)
Q Consensus       272 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  345 (378)
                                           +++++|++.||.+++.+|+++++.....+++.++.|.+.+..++.   ++|++
T Consensus       195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  244 (245)
T d2f6qa1         195 ---------------------TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECT  244 (245)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc---CcccC
Confidence                                 358899999999999999999998888899999999999999997   88875

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.6e-48  Score=371.09  Aligned_cols=289  Identities=15%  Similarity=0.152  Sum_probs=227.2

Q ss_pred             CCceEEEe-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           33 CNQVLVEG-KANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        33 ~~~v~~~~-~~~v~~Itln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ++.+.++. +++|++|+|| +|++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ...
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~   83 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL-PDA   83 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS-CHH
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc-cch
Confidence            45777776 7789999998 78899999999999999999999999999999999999999999999998764332 223


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (378)
                      ........+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~  163 (310)
T d1wdka4          84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhh
Confidence            3334445578899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHh-hhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                      +.+++++|+.++|+||+++||||+|||++++.+....++ ++...+.........                   ......
T Consensus       164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~-------------------~~~~~~  224 (310)
T d1wdka4         164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQP-------------------KLEKLK  224 (310)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGG-------------------GGSCCS
T ss_pred             hhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhh-------------------hccccc
Confidence            999999999999999999999999999999876554443 222221111110000                   000001


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhhH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEGV  348 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egv  348 (378)
                      .+.+++.+. .        ..+-..+.++...+.|.. ..+.+.+..+.+.+++++++.|.+.|.+++.   +++.+++|
T Consensus       225 ~~~~~~~~~-~--------~~~~~~~~~~~~~~~pA~-~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~---t~~a~~~i  291 (310)
T d1wdka4         225 LNAIEQMMA-F--------ETAKGFVAGQAGPNYPAP-VEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCLI  291 (310)
T ss_dssp             CCHHHHHHH-H--------HHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHHH
T ss_pred             ccchhhhHH-H--------HHhhhhhhhhccCCChHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence            111111110 0        011112344445555644 4457889999999999999999999999998   99999999


Q ss_pred             hhhhcCC
Q 017069          349 RARMVDR  355 (378)
Q Consensus       349 ~afl~ek  355 (378)
                      ++|+ +|
T Consensus       292 ~aF~-~k  297 (310)
T d1wdka4         292 GLFL-ND  297 (310)
T ss_dssp             HHHH-HH
T ss_pred             HHHH-hh
Confidence            9999 65

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=359.43  Aligned_cols=241  Identities=17%  Similarity=0.188  Sum_probs=216.8

Q ss_pred             CceEEEee--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCChhhHHHhhccCChH
Q 017069           34 NQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        34 ~~v~~~~~--~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      +.|.++.+  +||++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|+ +||+|+|++++..    ....
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~----~~~~   76 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPA   76 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc----cccc
Confidence            34566654  679999999996 69999999999999999999999999999999984 7999999998753    3456


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEE--eccccccCccCCcchHHHHhhcchH
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF--ATPETLIGFHPDAGASFYLSHLPGH  188 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (378)
                      ....++..+++++.++.++||||||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|.
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~  156 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH  156 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence            66778888999999999999999999999999999999999999999999876  7899999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhc
Q 017069          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (378)
Q Consensus       189 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  267 (378)
                      . +++++++|++++|++|+++||||+|+|++++++...                                          
T Consensus       157 ~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~------------------------------------------  194 (249)
T d1sg4a1         157 RAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTAL------------------------------------------  194 (249)
T ss_dssp             HHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHH------------------------------------------
T ss_pred             ccccccccccccccHHHHHhhccccccCChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999887753222                                          


Q ss_pred             CCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHccccCCCCcHHhh
Q 017069          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEG  347 (378)
Q Consensus       268 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  347 (378)
                                               ++++++++.||.+++.+|+++++.....+.+.++.|.+.+...+.   +++++++
T Consensus       195 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---~e~~~~~  246 (249)
T d1sg4a1         195 -------------------------SAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKS  246 (249)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHh
Confidence                                     358899999999999999999998888899999999999988876   8888888


Q ss_pred             Hh
Q 017069          348 VR  349 (378)
Q Consensus       348 v~  349 (378)
                      |+
T Consensus       247 le  248 (249)
T d1sg4a1         247 LQ  248 (249)
T ss_dssp             HT
T ss_pred             cC
Confidence            74

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=7.2e-48  Score=351.80  Aligned_cols=224  Identities=16%  Similarity=0.231  Sum_probs=199.9

Q ss_pred             eEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCChhhHHHhhccCChHHHHH
Q 017069           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKD  114 (378)
Q Consensus        36 v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (378)
                      +..+.+++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++...   ...+....
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~---~~~~~~~~   78 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEE   78 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhccccccccc---cccccccc
Confidence            34566889999999999999999999999999999999999999999999987 799999999998753   23455667


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHH
Q 017069          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (378)
Q Consensus       115 ~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (378)
                      +...+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|.. ++++
T Consensus        79 ~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l  157 (230)
T d2a7ka1          79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEI  157 (230)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHH
T ss_pred             chhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccc
Confidence            7788899999999999999999999999999999999999999999999999999999998765 5799999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcCCCCHH
Q 017069          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (378)
Q Consensus       194 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  273 (378)
                      +++|+.++|+||+++||||+|+|++++++.                                                  
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~--------------------------------------------------  187 (230)
T d2a7ka1         158 IYQCQSLDAPRCVDYRLVNQVVESSALLDA--------------------------------------------------  187 (230)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHH--------------------------------------------------
T ss_pred             ccccccchHHHHHHhhhcccCCChHHHHHH--------------------------------------------------
Confidence            999999999999999999999998766432                                                  


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 017069          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR  330 (378)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~  330 (378)
                                       +.+++++|++.||.+++.+|+++++.....+++.++.|..
T Consensus       188 -----------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         188 -----------------AITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             -----------------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                             1235889999999999999999999887778888776654

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-47  Score=357.81  Aligned_cols=241  Identities=16%  Similarity=0.113  Sum_probs=203.6

Q ss_pred             CCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccC----
Q 017069           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG----  107 (378)
Q Consensus        32 ~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~----  107 (378)
                      .++.|.++.+|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.......    
T Consensus         3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986432111    


Q ss_pred             ---ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC-ceEEeccccccCccCCcchHHHHh
Q 017069          108 ---KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLS  183 (378)
Q Consensus       108 ---~~~~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~  183 (378)
                         .......++.....++..+.++||||||+|||+|+|||++|+++||+|||++ .++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~  162 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP  162 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence               1223445667778899999999999999999999999999999999999965 688999999999999999999999


Q ss_pred             hcchHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHH
Q 017069          184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  262 (378)
Q Consensus       184 r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (378)
                      |++|.. +.+|++||+.++|+||+++||||+|+++++...  +++.                                  
T Consensus       163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~--~~~~----------------------------------  206 (266)
T d1pjha_         163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA--EAFN----------------------------------  206 (266)
T ss_dssp             HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCH--HHHH----------------------------------
T ss_pred             cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhH--HHHH----------------------------------
Confidence            999999 999999999999999999999999999877642  1110                                  


Q ss_pred             HHHhcCCCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 017069          263 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL  333 (378)
Q Consensus       263 ~~~~f~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~  333 (378)
                                               .+.+.++++++...++.++..+|++++......+..++..|.+...
T Consensus       207 -------------------------~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~  252 (266)
T d1pjha_         207 -------------------------AKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESL  252 (266)
T ss_dssp             -------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                                     1123346788888999999999999987666555555555544433

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2.4e-46  Score=345.52  Aligned_cols=226  Identities=16%  Similarity=0.222  Sum_probs=202.6

Q ss_pred             cCCCceEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChH
Q 017069           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (378)
Q Consensus        31 ~~~~~v~~~~~~~v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (378)
                      ..|+.|+++++|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.    ....+
T Consensus        10 ~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~----~~~~~   85 (249)
T d1szoa_          10 QKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFN----LGTPH   85 (249)
T ss_dssp             TSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSC----CSSHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhh----ccccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999874    33556


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEe-ccccccCccCCcchHHHHhhcchHH
Q 017069          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPETLIGFHPDAGASFYLSHLPGHL  189 (378)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (378)
                      ....+...++.++..+.++||||||+|+|+|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++|..
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~  164 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN  164 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence            66777788889999999999999999999885 477899999999999999995 7999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHhhhcCCCHHHHHHHHHHhccccCCCCchhhhHHHHHHHhcC
Q 017069          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (378)
Q Consensus       190 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  268 (378)
                       +++|++||+.++|+||+++||||+|||++++.+.                                             
T Consensus       165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~---------------------------------------------  199 (249)
T d1szoa_         165 RGRYFLLTGQELDARTALDYGAVNEVLSEQELLPR---------------------------------------------  199 (249)
T ss_dssp             HHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHH---------------------------------------------
T ss_pred             ceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHH---------------------------------------------
Confidence             9999999999999999999999999998766431                                             


Q ss_pred             CCCHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCchHHHHHHHHHHHhhcCCHHHHHHHH
Q 017069          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE  328 (378)
Q Consensus       269 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e  328 (378)
                                            +.++++++++.||.+++.+|+++++.....++..++.+
T Consensus       200 ----------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~e~~l~~~  237 (249)
T d1szoa_         200 ----------------------AWELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLG  237 (249)
T ss_dssp             ----------------------HHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence                                  22468999999999999999999987765566555543

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2e-06  Score=73.02  Aligned_cols=132  Identities=16%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      ++.++..++...+..++.++..+  .|.|.+      .|+|+..-                   ..++..|..++.|+..
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS------~GG~v~~g-------------------~~i~d~i~~~~~~v~t   79 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINS------PGGVITAG-------------------MSIYDTMQFIKPDVST   79 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE------CCBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeC------CCccHHHH-------------------HHHHHHHHhCCCCEEE
Confidence            68888888888887776433222  234444      35554432                   2344556778999999


Q ss_pred             EEcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchHHHHhh------------------cch--HH-HHH
Q 017069          136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYLSH------------------LPG--HL-GEF  192 (378)
Q Consensus       136 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r------------------~~g--~~-a~~  192 (378)
                      .+.|.|.+.|.-+.+++|  .|++.++++|.+-+...|..   |...-+..                  ..|  .. -..
T Consensus        80 v~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~  156 (183)
T d1yg6a1          80 ICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER  156 (183)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999988  79999999999888776642   22211111                  011  11 233


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      ++-.-.-++|+||+++||||+|+..
T Consensus       157 ~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         157 DTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HhccCccccHHHHHHcCCCcEEecc
Confidence            3333445799999999999999975

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=4.7e-06  Score=70.46  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           58 LNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d---~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      +|.++..++...|..++.+   ..+. |.|.+      .|+|+...                   ..++..+..++.||.
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS------~GG~v~~g-------------------l~i~d~i~~~~~~v~   75 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINS------PGGSISAG-------------------MAIYDTMVLAPCDIA   75 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEE------CCBCHHHH-------------------HHHHHHHHHCSSCEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeC------CCCCHHHH-------------------HHHHHHHHhhcccee
Confidence            6888888888877555432   2333 34444      45555432                   124445667899999


Q ss_pred             EEEcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchH----HHHh-----------hcch--HH-HHHHH
Q 017069          135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----FYLS-----------HLPG--HL-GEFLA  194 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~l~-----------r~~g--~~-a~~l~  194 (378)
                      ..+.|.|.+.|.-+++++|  .|++.++++|-+.+...|+.-...-.    ..+.           +..|  .. -...+
T Consensus        76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~  155 (179)
T d2cbya1          76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  155 (179)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            9999999999999999999  89999999999988765552211100    0011           1111  11 23445


Q ss_pred             hcCCCCCHHHHHHcCccceecCC
Q 017069          195 LTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       195 ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      -...-++|+||+++||||+|+..
T Consensus       156 ~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         156 DRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HTTCEEEHHHHHHHTSCSEECSC
T ss_pred             cCCceecHHHHHHcCCCcEEecC
Confidence            56777999999999999999875

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.09  E-value=1.8e-05  Score=67.46  Aligned_cols=134  Identities=12%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHHHHHhc-CC--CceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           58 LNTNMGAKLNKLFKAWEN-DP--NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~-d~--~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      ++.++...+...|..++. ++  .+. +.|.+.      |+|+..-                   ..++..+..++.||.
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~------GG~v~~g-------------------lai~d~i~~~~~~v~   86 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTP------GGSVSAG-------------------LAIVDTMNFIKADVQ   86 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEEC------CBCHHHH-------------------HHHHHHHHHSSSCEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCcee-eeecCC------CCCHHHH-------------------HHHHHHHHhcCcceE
Confidence            688888888887776653 22  333 444544      4444321                   234455677899999


Q ss_pred             EEEcceeechhhccccc--CCeEEEeCceEEeccccccCccCCcchH------HHHhh---c--------ch--HH-HHH
Q 017069          135 AILNGVTMGGGAGVSIP--GTFRVACGKTVFATPETLIGFHPDAGAS------FYLSH---L--------PG--HL-GEF  192 (378)
Q Consensus       135 aav~G~a~GgG~~lal~--~D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l~r---~--------~g--~~-a~~  192 (378)
                      ..+.|.|.+.|.-|+++  +|.|++.++++|-+-+...|........      ..+.+   .        .|  .. ...
T Consensus        87 t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~  166 (192)
T d1y7oa1          87 TIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHA  166 (192)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             EEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999888775  6799999999999998877664321111      01111   1        11  11 244


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 017069          193 LALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       193 l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      .+-...-++|+||+++||||+|+.+
T Consensus       167 ~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         167 DAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hhcCCceecHHHHHHcCCCcEEecC
Confidence            4556677999999999999999865

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.03  E-value=4.6e-05  Score=64.77  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           58 LNTNMGAKLNKLFKAWEND--PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d--~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      +|.++..++...|..++..  ..+.+ .|.      |.|+|+...                   ..++..+..++.|+..
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~l-~IN------S~GG~v~~g-------------------~ai~d~i~~~~~~v~t   80 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIKI-YIN------SPGGSINEG-------------------LAILDIFNYIKSDIQT   80 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEEE-EEE------ECCBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeEE-EEe------CchhhhhHH-------------------HHHHHHHHhhCCceEE
Confidence            7888888888888777542  23433 333      455665432                   2244456678999999


Q ss_pred             EEcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcch----HHHH-----------hhcchH--H-HHHHHh
Q 017069          136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA----SFYL-----------SHLPGH--L-GEFLAL  195 (378)
Q Consensus       136 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~----~~~l-----------~r~~g~--~-a~~l~l  195 (378)
                      .+.|.|.+.|..++++++  .|++.++++|-+.....|..-...-    ...+           .+..|.  . -...+-
T Consensus        81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~  160 (190)
T d2f6ia1          81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSD  160 (190)
T ss_dssp             EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcc
Confidence            999999999999999988  6999999999999887765321110    0101           111111  1 223333


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 017069          196 TGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       196 tG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      .-.-++|+||+++||||+|+++
T Consensus       161 ~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         161 RDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             TTCEECHHHHHHHTSCSEECCC
T ss_pred             CCeeecHHHHHHcCCCcEEccc
Confidence            4556999999999999999975

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.89  E-value=5.4e-05  Score=64.48  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           58 LNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        58 l~~~~~~eL~~~l~~~~~d---~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      ++..+...+...|..++..   ..+.+ .|.+.|      +|+..                   ...++..+..++.||.
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS~G------G~v~~-------------------g~~i~d~i~~~~~~V~   88 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHM-YINSPG------GVVTA-------------------GLAIYDTMQYILNPIC   88 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEECC------BCHHH-------------------HHHHHHHHHHSCSCEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEE-EeecCc------ccHHH-------------------HHHHHHHHHhhcCceE
Confidence            6788888888777666532   23443 345444      44332                   1234455677899999


Q ss_pred             EEEcceeechhhcccccCC--eEEEeCceEEeccccccCccCCcchHHHHh----------hc--------ch--HH-HH
Q 017069          135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYLS----------HL--------PG--HL-GE  191 (378)
Q Consensus       135 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~----------r~--------~g--~~-a~  191 (378)
                      ..+.|.|.+.|.-|.+++|  .|++.++|+|-+-+...|..   |-..-+.          ..        .|  .. ..
T Consensus        89 tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~  165 (193)
T d1tg6a1          89 TWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIE  165 (193)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             EEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            9999999999999999998  59999999999988876653   2211111          00        11  11 23


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC
Q 017069          192 FLALTGAKLNGAEMMACGLATHYSVS  217 (378)
Q Consensus       192 ~l~ltG~~~~a~eA~~~Glv~~vv~~  217 (378)
                      .++-...-++|+||+++||||+|+..
T Consensus       166 ~~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         166 SAMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHhccCccCCHHHHHHcCCCCEEccC
Confidence            33334455999999999999999864

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=0.00011  Score=67.06  Aligned_cols=137  Identities=11%  Similarity=0.001  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -+++++-...-.+.++.++.- .+-+|-|--.++ |-.|.+-.+             ......+.+.+..+..+.+|+|+
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG-~~~g~~~E~-------------~g~~~~~a~~~~~~~~~~vP~i~  194 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPG-AYPGVGAEE-------------RGQSEAIARNLREMSRLGVPVVC  194 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESC-SCCSHHHHH-------------TTHHHHHHHHHHHHHTCSSCEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCc-ccCCccccc-------------ccHHHHHHHHHHHHHhCCCceEE
Confidence            357888888888888887764 355555544333 333332221             22334556677888999999999


Q ss_pred             EEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 017069          136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY  214 (378)
Q Consensus       136 av~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~v  214 (378)
                      .|-|-+.|||+--...+|.+++.++|+++.      +.|.++++..+...--.. +.+.    ..+++++.+++|+||+|
T Consensus       195 vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeI  264 (316)
T d2f9ya1         195 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI  264 (316)
T ss_dssp             EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred             EEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhc
Confidence            999999999998888899999999999982      356665655554433333 4333    35889999999999999


Q ss_pred             cCC
Q 017069          215 SVS  217 (378)
Q Consensus       215 v~~  217 (378)
                      ++.
T Consensus       265 I~E  267 (316)
T d2f9ya1         265 IPE  267 (316)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            975

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.73  E-value=0.00035  Score=61.75  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++-.|..-+.-+++......+..+.+.+.++. +-+|.+.-     |+|+.+.+-.        .....+-..+..+ 
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~--------~~l~~~~~~~~~~-  155 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGI--------DSLSGYGKMFFAN-  155 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHHH-
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCcccccc--------eeccccceehHHH-
Confidence            5555555555778899999999999998887654 45555543     4444444311        1111121222222 


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCHH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  203 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  203 (378)
                      ..+.. .+|+|+++.|+|.||+.....+||++|+++++.+.+.-.           ..+.          ..+|+.++.+
T Consensus       156 ~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP-----------~vVe----------~~~ge~~~~e  213 (253)
T d1on3a1         156 VKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP-----------QVIK----------SVTGEDVTAD  213 (253)
T ss_dssp             HHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH-----------HHHH----------HHHCCCCCHH
T ss_pred             HHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEecCc-----------chhh----------hhhCCcCChH
Confidence            22333 499999999999999999999999999999877664311           1111          1356777765


Q ss_pred             HH-------HHcCccceecCCCCh
Q 017069          204 EM-------MACGLATHYSVSEKL  220 (378)
Q Consensus       204 eA-------~~~Glv~~vv~~~~l  220 (378)
                      |.       ..-|.+|.++++++.
T Consensus       214 elGga~~h~~~sG~iD~v~~~e~~  237 (253)
T d1on3a1         214 ELGGAEAHMAISGNIHFVAEDDDA  237 (253)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSHHH
T ss_pred             hccCHHHhhhccccceEEECCHHH
Confidence            43       357999999998654

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.56  E-value=0.00086  Score=59.35  Aligned_cols=138  Identities=16%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-+.-+++....+.+..+.+.+.++. +-+|.|.-.     .|+.+.+-..        ....+ ..+....
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~ds-----gGarm~e~~~--------~~~~~-~~~~~~~  154 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS-----GGARIQEGVA--------SLGAY-GEIFRRN  154 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGTHH--------HHHHH-HHHHHHH
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecC-----CCcccCcccc--------cccch-hHHHHHH
Confidence            6666666666778899999999999999888754 567777663     4444443211        11111 1122222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC-ceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      .. ..-.+|+|+++.|+|.||+.....+||++|+.+ .+.+++.-.               +++     + ..+|+.++.
T Consensus       155 ~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP---------------~vv-----~-~~~ge~i~~  212 (258)
T d1xnya1         155 TH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP---------------DVI-----K-TVTGEDVGF  212 (258)
T ss_dssp             HH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH---------------HHH-----H-HHHCCCCCH
T ss_pred             HH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH---------------HHH-----H-HHhcCccCh
Confidence            22 234699999999999999999888899988876 555543211               111     1 357888888


Q ss_pred             HHH-------HHcCccceecCCC
Q 017069          203 AEM-------MACGLATHYSVSE  218 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~  218 (378)
                      +|+       ..-|++|.+++++
T Consensus       213 eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         213 EELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             HHHHBHHHHHHTSSCCSEEESSH
T ss_pred             HHhccHHHHHhcCCeeEEEeCCH
Confidence            875       4569999999864

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=0.00072  Score=59.64  Aligned_cols=139  Identities=14%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-+++......+..+.+.+.+.. +-+|.|..     |+|..+.+-..        ....+-. +....
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~--------~l~~~~~-~~~~~  152 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVD--------ALAGYGE-IFLRN  152 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH--------HHHHHHH-HHHHH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCcccccccc--------ccccchH-HHHHH
Confidence            5555555555677889988899999888887654 45665555     44555543211        1111111 11112


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCc-eEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      . ...-.+|+|+++.|+|.||+.....+||++|+.++ +.+.       +.+        |+++.      ..+|+.++.
T Consensus       153 ~-~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~-------~aG--------p~vv~------~~~ge~~~~  210 (251)
T d1vrga1         153 T-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMF-------ITG--------PNVIK------AVTGEEISQ  210 (251)
T ss_dssp             H-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB-------SSC--------HHHHH------HHHCCCCCH
T ss_pred             H-HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEE-------ecC--------chhhh------hhcCCcCCh
Confidence            2 23457999999999999999999999999998764 4432       211        11111      257888998


Q ss_pred             HHH-------HHcCccceecCCCC
Q 017069          203 AEM-------MACGLATHYSVSEK  219 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~~  219 (378)
                      ++.       .+-|.+|.++++++
T Consensus       211 eelGga~~h~~~sG~~D~v~~de~  234 (251)
T d1vrga1         211 EDLGGAMVHNQKSGNAHFLADNDE  234 (251)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSHH
T ss_pred             HHccchhhhhhccccceEEECCHH
Confidence            875       45799999998753

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00037  Score=62.05  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |+++-.|..-..-+++....+.+..+.+.+.+.. +-+|.++-     |+|..+.+-.        ..... ........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~--------~sl~~-~~~~~~~~  162 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEAL--------MSLMQ-MAKTSAAL  162 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTH--------HHHHH-HHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCccccccc--------chhhc-chhHHHHH
Confidence            5556666555778899999999999998887653 45666654     4455554321        11111 22222333


Q ss_pred             HHHhcCCCcEEEEEcceeechhh-cccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCC--
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--  200 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~--  200 (378)
                      ..+....+|+|+++.|+|.||+. .+++++|++++.+.+.+++.-.+           .+..          .+|+.+  
T Consensus       163 ~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~-----------vve~----------~~ge~~~e  221 (263)
T d2f9yb1         163 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQ----------TVREKLPP  221 (263)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-----------HHHH----------HHTSCCCT
T ss_pred             HHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHH-----------HHhh----------hcCCcCCh
Confidence            44456779999999999999986 57778888888888776653211           1111          223333  


Q ss_pred             ---CHHHHHHcCccceecCCCCh
Q 017069          201 ---NGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       201 ---~a~eA~~~Glv~~vv~~~~l  220 (378)
                         +++-..+.|+||.++++++.
T Consensus       222 ~~g~a~~~~~~G~iD~vv~~ee~  244 (263)
T d2f9yb1         222 GFQRSEFLIEKGAIDMIVRRPEM  244 (263)
T ss_dssp             TTTBHHHHGGGTCCSEECCHHHH
T ss_pred             hhccHHHHHhCCCCCEEECCHHH
Confidence               44445678999999986553

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=0.00089  Score=59.24  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++-.|..-+.-+++......+..+.+.+.++. +.+|.|.-     |+|..+.+-.       . ....+ ..+....
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~-------~-~~~~~-~~~~~~~  155 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGV-------V-SLGLY-SRIFRNN  155 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCT-------H-HHHHH-HHHHHHH
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccc-------c-cccch-hhHHHHH
Confidence            6666666666778899999999999999887764 55666554     4444544311       1 11111 1122222


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeC-ceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCCCH
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a  202 (378)
                      . ...-.+|+|+++.|+|.||+......||++|+.+ .+.+.+.           +...+         + ..+|+.++.
T Consensus       156 ~-~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a-----------GP~vV---------~-~~~ge~~~~  213 (258)
T d2a7sa1         156 I-LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT-----------GPDVI---------K-TVTGEEVTM  213 (258)
T ss_dssp             H-HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS-----------CHHHH---------H-HHHCCCCCH
T ss_pred             H-HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc-----------ChhHH---------H-HhcCCccCh
Confidence            2 2345699999999999999999988999999866 4544322           11111         1 247888887


Q ss_pred             HHH-------HHcCccceecCCC
Q 017069          203 AEM-------MACGLATHYSVSE  218 (378)
Q Consensus       203 ~eA-------~~~Glv~~vv~~~  218 (378)
                      +|.       .+.|.+|.+++++
T Consensus       214 eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         214 EELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             hhccCHhHhhhhccccceEeCCH
Confidence            764       4579999999864

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.18  E-value=0.00054  Score=61.66  Aligned_cols=161  Identities=14%  Similarity=0.071  Sum_probs=90.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (378)
Q Consensus        44 v~~Itln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (378)
                      |.++--|..-+.-++++...+.+.++++.+.+.. +-+|.|.-     |.|+.+..-....  .........+.    -.
T Consensus       106 v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~d-----s~Ga~~~~~~e~~--~~~~~~g~~~~----~~  173 (287)
T d1pixa2         106 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVY--PNRRGGGTPFF----RN  173 (287)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHS--SSTTSTTHHHH----HH
T ss_pred             EEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEec-----CCcccCCcchhhc--cchhhHHHHHH----HH
Confidence            4444444333667888999999999988887653 55666654     3444443211110  00000011111    12


Q ss_pred             HHHhcCCCcEEEEEcceeechhhcccccCCeEEEeCceEEecc--ccccCccCCcchHHHHhhcchHH-HHHHHhcCCCC
Q 017069          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP--ETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKL  200 (378)
Q Consensus       124 ~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p--e~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~~  200 (378)
                      ..+....+|+|++|.|+|.|||.-.+++||++++.+++.+.+.  .+--+..+..+........+... ...  .+-+.+
T Consensus       174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge~--~~~eeL  251 (287)
T d1pixa2         174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRT--GKTEPP  251 (287)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTT--CCCCCS
T ss_pred             HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhccc--cccccc
Confidence            2345678999999999999999888888888888888877663  22223333322222112211111 111  133444


Q ss_pred             CHHHH--HHcCccceecCCC
Q 017069          201 NGAEM--MACGLATHYSVSE  218 (378)
Q Consensus       201 ~a~eA--~~~Glv~~vv~~~  218 (378)
                      .+.+.  ..-|.+|.+++++
T Consensus       252 GGa~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         252 GAVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             SBHHHHTTTSCCSCEEESSH
T ss_pred             ccHHHhhhhcccceeecCCH
Confidence            44443  3569999999874

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.0069  Score=53.42  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      .|...-|.-|+|. ...+++.+-.....+.++.++.. ++-.|.|.-. ..|..|.+..             .....+..
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E-------------~~g~~~~g  129 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQE-------------HGGIIRHG  129 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHH-------------HHhHHHHH
Confidence            3433334445554 34579999999999999888764 4667766653 3455554322             22345667


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhc-cc---ccCCeEEEeCceEEeccccccCccCCcchHHHHhhc-chH-----H
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAG-VS---IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L  189 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~-la---l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~-----~  189 (378)
                      .+++..+..+.+|.|+.|-|.++|+|.. ++   +.+|++++.+++.++.       ..+-++...+.+. +-.     .
T Consensus       130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHH
Confidence            7888999999999999999999998762 22   3588888887777663       3333333333221 110     0


Q ss_pred             -HHHH--HhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          190 -GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       190 -a~~l--~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                       ...+  .+.-+.-++-.+...|++|.|+++.+..
T Consensus       203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR  237 (264)
T d1vrga2         203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETR  237 (264)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence             0000  0111223677888999999999987653

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.0085  Score=53.03  Aligned_cols=159  Identities=15%  Similarity=0.172  Sum_probs=101.0

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHH
Q 017069           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (378)
Q Consensus        41 ~~~v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (378)
                      +|...-|.-|+|. ....++.+......+.++.++.. ++-+|.|.-. ..|..|.+..             .....+..
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E-------------~~g~~~~g  132 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQE-------------YNGIIRRG  132 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HHCHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHH-------------HhhHHHHH
Confidence            4443334445554 33589999999999999888764 5777777654 3455554322             23345566


Q ss_pred             HHHHHHHhcCCCcEEEEEcceeechhhcc----cccCCeEEEeCceEEeccccccCccCCcchHHHHhh-cchHH-----
Q 017069          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGV----SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL-----  189 (378)
Q Consensus       120 ~~l~~~i~~~~kP~Iaav~G~a~GgG~~l----al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g~~-----  189 (378)
                      .+++.++..+.+|.|+.|-|.++|+|...    .+.+|++++.+++.++.       .++-|+...+.+ .+...     
T Consensus       133 a~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~  205 (271)
T d2a7sa2         133 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGE  205 (271)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSC
T ss_pred             HHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhccc
Confidence            78888999999999999999999987432    23478888887777663       333333333332 22110     


Q ss_pred             -------HHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          190 -------GEFLALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       190 -------a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                             ....-.....-++-.|.+.|++|.|+++.+..
T Consensus       206 ~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR  244 (271)
T d2a7sa2         206 DIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTR  244 (271)
T ss_dssp             CTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence                   01111223334667788899999999987753

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.66  E-value=0.0065  Score=53.55  Aligned_cols=153  Identities=15%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  122 (378)
Q Consensus        44 v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  122 (378)
                      |++| -|+|. ...+++.+......+.++.++.. ++-+|.|.-. ..|..|.+-.             .....+...++
T Consensus        67 vgvi-a~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E-------------~~g~~~~ga~~  130 (263)
T d1xnya2          67 VGIV-ANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQE-------------HDGIIRRGAKL  130 (263)
T ss_dssp             EEEE-EECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHHHHH
T ss_pred             EEEE-ecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHH-------------HHhHHHHHHHH
Confidence            4444 44443 34589999999999999888765 4667766654 3355554322             22345667788


Q ss_pred             HHHHhcCCCcEEEEEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHhhcch-----------
Q 017069          123 IYLLGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-----------  187 (378)
Q Consensus       123 ~~~i~~~~kP~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g-----------  187 (378)
                      +.++..+.+|.|+.|-|.++|||....    +..|+++|.+++.++.       .++-|+...+.+.-.           
T Consensus       131 ~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~  203 (263)
T d1xnya2         131 IFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATR  203 (263)
T ss_dssp             HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSH
T ss_pred             HHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHH
Confidence            889999999999999999999876432    2468888887777663       333333333322111           


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 017069          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       188 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      .. ..++  .-...++-.+...|++|.|+++.+..
T Consensus       204 ~~~~~~~--~~~~~~p~~aA~~g~iD~VIdP~dTR  236 (263)
T d1xnya2         204 ARLIQEY--EDALLNPYTAAERGYVDAVIMPSDTR  236 (263)
T ss_dssp             HHHHHHH--HHHHSSSHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHHH--HHHhcCHHHHHHcccCCcccCHHHHH
Confidence            00 0111  01123466778899999999987763

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.27  E-value=0.02  Score=50.29  Aligned_cols=154  Identities=15%  Similarity=0.097  Sum_probs=97.4

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHH
Q 017069           44 SRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  122 (378)
Q Consensus        44 v~~Itln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  122 (378)
                      |++| =|+|. ...+++.+-.....+.++.++.. ++-+|.|.-. ..|..|.+-.             .....+...++
T Consensus        69 vgvi-an~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E-------------~~g~i~~ga~~  132 (264)
T d1on3a2          69 VGIV-ANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQE-------------YGGIIRHGAKM  132 (264)
T ss_dssp             EEEE-EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHHHHH
T ss_pred             EEEE-eccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHH-------------HHHHHHHHHHH
Confidence            4444 44554 45679999999999988888764 5677777654 3466654422             22345667788


Q ss_pred             HHHHhcCCCcEEEEEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHhhc-chH----HH--H
Q 017069          123 IYLLGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH----LG--E  191 (378)
Q Consensus       123 ~~~i~~~~kP~Iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~----~a--~  191 (378)
                      +.++.++.+|.|+.|-|.++|+|..-.    +.+|++++.+++.++       ..++-|+...+.+. +..    ..  .
T Consensus       133 ~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~  205 (264)
T d1on3a2         133 LYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRA  205 (264)
T ss_dssp             HHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHH
T ss_pred             HHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhH
Confidence            899999999999999999999875332    246777777666655       44444444433321 110    00  0


Q ss_pred             H-H-HhcCCCCCHHHHHHcCccceecCCCCh
Q 017069          192 F-L-ALTGAKLNGAEMMACGLATHYSVSEKL  220 (378)
Q Consensus       192 ~-l-~ltG~~~~a~eA~~~Glv~~vv~~~~l  220 (378)
                      + + -...+.-++-.|...|++|+|+++.+.
T Consensus       206 ~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eT  236 (264)
T d1on3a2         206 EKIEEYQNAFNTPYVAAARGQVDDVIDPADT  236 (264)
T ss_dssp             HHHHHHHHHHSSHHHHHHTTSSSEECCGGGH
T ss_pred             HHHHHHHHHhcCHHHHHHcCCCCeeECHHHH
Confidence            0 0 011112356678889999999988764

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.88  E-value=0.34  Score=42.81  Aligned_cols=147  Identities=16%  Similarity=0.054  Sum_probs=90.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 017069           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (378)
Q Consensus        55 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I  134 (378)
                      .-+++.+......+.++.++.. .+-+|.|.-. ..|..|.+-.             .....+...+++.++..+.+|.|
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E-------------~~g~~r~ga~~~~a~~~~~VP~i  160 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF  160 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH-------------hhhHHHHHHHHHHHHHhhcceeE
Confidence            4568899999999999888865 4666766543 3355553322             12345556778888999999999


Q ss_pred             EEEcceeechhhccc----ccCCeEEEeCceEEeccccccCccCCcchHHHHh-hcchHH-------------HHHHHh-
Q 017069          135 AILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHL-------------GEFLAL-  195 (378)
Q Consensus       135 aav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~g~~-------------a~~l~l-  195 (378)
                      +.|-|.++|||....    ...|++++     +..|..++|+.++-++...+. +.+...             -.+++- 
T Consensus       161 svi~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~  235 (299)
T d1pixa3         161 EITLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  235 (299)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             EEEecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999885322    22343331     123444556655444444332 222110             011110 


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChh
Q 017069          196 TGAKLNGAEMMACGLATHYSVSEKLP  221 (378)
Q Consensus       196 tG~~~~a~eA~~~Glv~~vv~~~~l~  221 (378)
                      .-+.-++-.|.+.|+||+|+++.+..
T Consensus       236 ~~~~~sp~~aAs~~~iD~IIDP~dTR  261 (299)
T d1pixa3         236 FYTKSRPKVCAELGLVDEIVDMNKIR  261 (299)
T ss_dssp             HHHTTSHHHHHHHTSSSEECCTTTHH
T ss_pred             HHHhcCHHHHHHhCCcCeeECHHHHH
Confidence            01235777888999999999998754

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.015  Score=52.63  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             CCCcEEEEEcceeechhhcccccCCeEEEeCceEEeccccccCccCCcchHHHHhhcchHHHHHHHhcCCCC--C-----
Q 017069          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--N-----  201 (378)
Q Consensus       129 ~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~~--~-----  201 (378)
                      -..|+|++|.|+|+|+|.-++..||++|+.+++.+.+.           +...+..          .+|+.+  +     
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~----------~lG~eVy~s~~eLG  297 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINK----------MLGREVYTSNLQLG  297 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHH----------HSSSCCCSCTHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHH----------hcCccccCChhHhC
Confidence            46999999999999999999999999999998776543           1111222          345544  3     


Q ss_pred             -HHHHHHcCccceecCCC
Q 017069          202 -GAEMMACGLATHYSVSE  218 (378)
Q Consensus       202 -a~eA~~~Glv~~vv~~~  218 (378)
                       ++-..+-|++|.+++++
T Consensus       298 G~~i~~~nGv~h~~a~dd  315 (333)
T d1uyra1         298 GTQIMYNNGVSHLTAVDD  315 (333)
T ss_dssp             SHHHHHHHTSSSEEESSH
T ss_pred             CHhHHhhCCCceEEeCCH
Confidence             33345789999999865

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.43  E-value=0.87  Score=41.54  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCChhhHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 017069           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (378)
Q Consensus        56 Nal~~~~~~eL~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~Ia  135 (378)
                      -.+.++-...-.+.+..+.+..++-+|+|.-. .+|+.|-+-.             ....++....++..+..+.+|+|.
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E-------------~~gilr~GA~iv~A~~~~~vP~i~  173 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM-------------FNEVLKYGSFIVDALVDYKQPIII  173 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHH-------------HHHHHHHHHHHHHHHHhcCCCEEE
Confidence            45778888888898888776666777777644 6688876532             123445566788889999999999


Q ss_pred             EE--cceeechhhcccc---cCCeEEEeCceEEeccccccCccCCcchHHHH
Q 017069          136 IL--NGVTMGGGAGVSI---PGTFRVACGKTVFATPETLIGFHPDAGASFYL  182 (378)
Q Consensus       136 av--~G~a~GgG~~lal---~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  182 (378)
                      .|  .|.+.||.+.++-   ..|..     ..|+.|..++|+.++-|+....
T Consensus       174 vI~~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         174 YIPPTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             EECTTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred             EEeCCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence            99  6777776654432   12221     2344555566666666665544