Citrus Sinensis ID: 017111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHccccEEEEEEEEEEEEEcEEEEEccccEEEEccccEEEEcccEEEEcccEEEEEccEEEcccccccccEEEccccccEEEEcccccccccccEEEEccccEEEEEcEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEcEEEEccccEEEEEccccEEEEEcEEEEccccccEEEEEEccccccccccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEEEccccEEEEccccccccEEEEEEccccccccccEEEEEEccccccccEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEcccccccEEEEEEcccccHHcccccEcccccHHHHHccccEEccccccccccccHccccccccccHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mgnshghhhhhrneansyfphqtptptpppfkfgpsdhhqhqpaaqfqnnstmslpyahvdcSLRALAGqaegfgrlaigglhgplyhvttladdgpgslregcrmkepLWIVFEVSGtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdyddgliditrestditvsrchfsshdktmligadpshvadrcirvtihhcffdgtrqrhprvrYAKVHLYnnytrnwgIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKasdkeeartdcirsegdlsSLKLKAGLMAEagehnmfhpsehyyTWTVAERTDNLKQLLQRCtgwqdvqcpad
Flexible Loop (DISEMBL)
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSgtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdYDDGLIDITrestditvsrchfSSHDKTMLIGADPSHVADRCIRVTIHhcffdgtrqrhprVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEkasdkeeartdcirsegdlsslKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCtgwqdvqcpad
Low Complexity Region (SEG)
MGNShghhhhhRNEANSYFPHQtptptpppFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD
Disordered region (IsUnstruct)
******************************************************LPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLT****************************L****GEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDV*****
Disordered Region (DISOPRED)
****************************************************MSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQ****
Disordered Region (DISEMBL)
*************EANSYFPHQTPTPTPPPFKFG**********AQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEK***********IRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD
Disordered Region (DISPRO)
*****************************PFKFGP****QHQPA****NNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q9C8G4	368	Probable pectate lyase 4	no	no	0.610	0.625	0.414	3e-43
Q9FM66	392	Putative pectate lyase 21	no	no	0.679	0.653	0.382	5e-42
Q93Z04	501	Probable pectate lyase 13	no	no	0.673	0.506	0.394	7e-40
O65388	384	Putative pectate lyase 2	no	no	0.599	0.588	0.398	2e-39
Q9LTZ0	412	Putative pectate lyase 11	no	no	0.660	0.604	0.362	4e-37
P15721	398	Probable pectate lyase P5	N/A	no	0.729	0.690	0.370	1e-36
P40972	397	Pectate lyase OS=Nicotian	N/A	no	0.729	0.692	0.355	3e-36
P27762	397	Pollen allergen Amb a 2 O	N/A	no	0.777	0.738	0.329	6e-36
Q944R1	470	Probable pectate lyase 15	no	no	0.681	0.546	0.371	7e-36
P27760	398	Pollen allergen Amb a 1.2	N/A	no	0.681	0.645	0.354	1e-35

>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 145/241 (60%), Gaps = 11/241 (4%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
           +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I
Sbjct: 53  QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQ 175
            L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I+
Sbjct: 113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query: 176 IKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCI 235
           +  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +
Sbjct: 173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query: 236 RVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
           RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K
Sbjct: 232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query: 295 K 295
           +
Sbjct: 292 R 292

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2

>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 148/277 (53%), Gaps = 21/277 (7%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGT 119
           + LA  A GFGR +IGG  G  Y VT   DD P     G+LR      +PLWI+F+    
Sbjct: 66  KNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMV 125

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------G 166
           I L+  L V+SYKTIDGRG  V++  G  L L +  ++II NL                G
Sbjct: 126 IQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLG 185

Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226
              D D I I  +S+ IWID C+L    DGLID    STDIT+S  +  +H++ ML+G  
Sbjct: 186 GYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHS 244

Query: 227 PSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQ 285
             +  DR +RVTI   +F +G  QR PR R+   H+ NN  R+W +YA+  S +  I+SQ
Sbjct: 245 DEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQ 304

Query: 286 CNIYEAGQKKMAFKYLTEKASD-KEEARTDCIRSEGD 321
            N++ A   +   +    +++D  EE +    +SEGD
Sbjct: 305 GNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGD 341

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 149/274 (54%), Gaps = 20/274 (7%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
           LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I 
Sbjct: 99  LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query: 122 LRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDV 171
           L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D 
Sbjct: 159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
           D I I   S+ IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  
Sbjct: 219 DGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query: 232 DRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
           D  ++VTI  + F  G  QR PR R   +H+ NN    W +YA+  S +  I SQ N Y 
Sbjct: 278 DTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYS 337

Query: 291 AGQKKMAFKYLTEKASDKEEARTD--CIRSEGDL 322
           A     A K +T++   K++        R+EGDL
Sbjct: 338 APSDPSA-KEVTKRVDSKDDGEWSNWNWRTEGDL 370

Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 135/251 (53%), Gaps = 25/251 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG----PGSLREGCRMKEPLWIVFEVSGTI 120
           RALA  A GFG+ A+GG +G +Y VT  +DD     PG+LR      +PLWI F     I
Sbjct: 54  RALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVI 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE--------------- 164
            LR+ L ++SYKTIDGRG +V++  G  + ++   HVII  +                  
Sbjct: 114 VLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPT 173

Query: 165 ---GGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
                KG D DAI I   S HIWID C      DGLID+   ST +T+S  +F+ HDK M
Sbjct: 174 HVGSRKGSDGDAIAIF-DSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVM 232

Query: 222 LIGADPSHVADRCIRVTIHHCFFD-GTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+G + ++V D+ +RVTI    F  G  +R PRVR    H+ NN    W +YA+  S D 
Sbjct: 233 LLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADP 292

Query: 281 QIYSQCNIYEA 291
            I+S+ N + A
Sbjct: 293 TIFSEGNYFVA 303

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 146/287 (50%), Gaps = 38/287 (13%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
           LA  A GFG+ AIGG  G +Y VT  A+D P     G+LR     +EPLWI+F+    I 
Sbjct: 83  LADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIR 142

Query: 122 LRSHLSVSSYKTIDGRGQRVKLT-------------------------GKGLRLKECEHV 156
           L+  L ++S+KTIDGRG  V +T                         G G  +K+  H 
Sbjct: 143 LKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHH 202

Query: 157 IICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS 216
               ++ +G      DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + 
Sbjct: 203 TGWWMQSDG------DAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTH 255

Query: 217 HDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVC 275
           HDK ML+G   S+  D+ ++VTI  + F +G  QR PR R+   H+ NN   +W +YA+ 
Sbjct: 256 HDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 315

Query: 276 ASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
            S    IYSQ N + A   +   +    + + + + R    RSEGD+
Sbjct: 316 GSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDM 362

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 151/308 (49%), Gaps = 33/308 (10%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIH 121
           +A  A GFG  A+GG +GP Y VT  +DD      PG+LR G   K PLWI F  S  I 
Sbjct: 66  MADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIR 125

Query: 122 LRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE---------------- 164
           L   L VSS KTIDGRG+ V +  G G++++   +VII NL                   
Sbjct: 126 LTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDH 185

Query: 165 -GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML 222
            G +G D  DAI I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML
Sbjct: 186 LGLRGADEGDAISIF-NSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVML 244

Query: 223 IGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
            GA+     DR +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S  +
Sbjct: 245 FGANDHAEEDRGMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGA 303

Query: 281 QIYSQCNIYEAGQKKMA--FKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEH 338
            I SQ N + A  K +     Y  +  S  EE       ++GD             +G+ 
Sbjct: 304 TIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWITDGDDFE---NGATFTPSGDQ 360

Query: 339 NMFHPSEH 346
           N+    +H
Sbjct: 361 NLLSKIDH 368

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 157/312 (50%), Gaps = 37/312 (11%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           + +A  A GFG  AIGG  G +Y VT  +DD      PG+LR G   KEPLWI+F  +  
Sbjct: 63  QKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMK 122

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFE-------------- 164
           I L   L V+S KTIDGRG  V +  G G++++   ++II NL                 
Sbjct: 123 IKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESE 182

Query: 165 ---GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
              G +G D  D I I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K 
Sbjct: 183 DHVGLRGSDEGDGISIF-SSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKV 241

Query: 221 MLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASV 278
           ML GA+  +V D+ +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S 
Sbjct: 242 MLFGANDHYVLDKDMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSS 300

Query: 279 DSQIYSQCNIYEAGQKKMAFKYLTEK----ASDKEEARTDCIRSEGDLSSLKLKAGLMAE 334
            + I SQ N + A + ++  K +T +    AS  E  +   I    D+ +          
Sbjct: 301 GATIISQGNRFIA-EDELLVKEVTYREKLTASVAEWMKWTWISDGDDMEN----GATFTP 355

Query: 335 AGEHNMFHPSEH 346
           +G+ N+    +H
Sbjct: 356 SGDQNLLDKIDH 367

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P27762|MPAA2_AMBAR Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 157/322 (48%), Gaps = 29/322 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           +AL   A+GFG+   GG  G +Y VT+  DD       G+LR G     PLWI+F+    
Sbjct: 66  QALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMI 125

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE------FEGGK-----G 168
           I+L+  + V+S KTIDGRG +V+L   G+ L   ++VII N++        GG+     G
Sbjct: 126 IYLQQEMVVTSDKTIDGRGAKVELVYGGITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGG 185

Query: 169 P-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           P       D DAI +   S  IWID C+L    DGL+D+   ST +T+S C F+ H+K +
Sbjct: 186 PAIPRHQSDGDAIHVT-GSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAV 244

Query: 222 LIGADPSHVADRCIRVTIHHCFFDGT-RQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+GA  +H  D  + VT+ +  F  T  +R PR R+    + NN+   W  YA+  S + 
Sbjct: 245 LLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNNFYDRWDKYAIGGSSNP 304

Query: 281 QIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNM 340
            I SQ N + A              + + E  T   R++ D+    L+ G +  A   + 
Sbjct: 305 TILSQGNKFVAPDFIYKKNVCLRTGAQEPEWMTWNWRTQNDV----LENGAIFVASGSDP 360

Query: 341 FHPSEHYYTWTVAERTDNLKQL 362
              +E       AE  D + QL
Sbjct: 361 VLTAEQNAGMMQAEPGDMVPQL 382

Ambrosia artemisiifolia (taxid: 4212)

>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 141/283 (49%), Gaps = 26/283 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           + LA    GFGR AIGG  G  Y VT   D+      PG+LR     +EPLWIVF+    
Sbjct: 139 KRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMV 198

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLE---------------- 162
           I L+  L ++S+KTID RG  V +  G  + ++   +VII  L                 
Sbjct: 199 IELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSP 258

Query: 163 --FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
             F      D DA+ I   S HIWID  SL    DGL+D    ST ITVS  HF+ H++ 
Sbjct: 259 SHFGWRTMADGDAVSIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEV 317

Query: 221 MLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD 279
           ML+G   S+  D+ ++VTI +  F +G  QR PR R+   H+ NN   +W +YA+  S +
Sbjct: 318 MLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAE 377

Query: 280 SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
             I SQ N Y A   + A +      +D  E +    RSEGDL
Sbjct: 378 PTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDL 420

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P27760|MPA12_AMBAR Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 25/282 (8%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           +ALA  A+GF +   GG HG +Y VT+  DD       G+LR       PLWI+F+ +  
Sbjct: 67  QALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMV 126

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVI----------IC-NLEFEGGKG 168
           IHL   L V+S KTIDGRG +V +   GL L   +++I          +C     +   G
Sbjct: 127 IHLNQELVVNSDKTIDGRGVKVNIVNAGLTLMNVKNIIIHNINIHDIKVCPGGMIKSNDG 186

Query: 169 P-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           P       D DAI +   S  IWID CSL    DGL+DIT  S+ +TVS C F+ H   +
Sbjct: 187 PPILRQQSDGDAINVA-GSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVL 245

Query: 222 LIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+GAD +H  D+ +  T+  + F D   QR PR R+    + NN    WG YA+  S   
Sbjct: 246 LLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAP 305

Query: 281 QIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
            I SQ N + A    +    L    +   E+ +   R++ DL
Sbjct: 306 TILSQGNRFFAPDDIIKKNVLARTGTGNAESMSWNWRTDRDL 347

Ambrosia artemisiifolia (taxid: 4212)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
118483499	386	unknown [Populus trichocarpa]	0.989	0.966	0.75	1e-163
118488640	389	unknown [Populus trichocarpa]	0.992	0.961	0.746	1e-163
225439836	373	PREDICTED: probable pectate lyase 4-like	0.976	0.986	0.753	1e-161
224092007	333	predicted protein [Populus trichocarpa]	0.859	0.972	0.833	1e-159
224140117	333	predicted protein [Populus trichocarpa]	0.859	0.972	0.833	1e-159
297741529	329	unnamed protein product [Vitis vinifera]	0.851	0.975	0.842	1e-158
356548168	366	PREDICTED: probable pectate lyase 4-like	0.962	0.991	0.716	1e-156
255587404	389	Pollen allergen Amb a 1.1 precursor, put	1.0	0.969	0.747	1e-154
147866065	422	hypothetical protein VITISV_005608 [Viti	0.976	0.872	0.666	1e-154
157674317	393	pectate lyase 1 [Hevea brasiliensis]	0.915	0.877	0.748	1e-152

>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 288/384 (75%), Positives = 317/384 (82%), Gaps = 11/384 (2%)

Query: 1   MGNSH--GHHHHHRNEANSYFPHQT---PTPTPP--PFKFGPSDHHQHQPAAQFQNNSTM 53
           MGNSH  GH    R+  N  FP +T   P+ + P  PF + P    Q   ++        
Sbjct: 1   MGNSHDHGHRRKFRDNGNVPFPDKTAAVPSASQPVPPFIYQP----QIPTSSTRTPKMAT 56

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           +LPY HVD SLRALA QAEGFGR A GGLHGP+Y+VTTLADDGPGSLR+GCR KEPLWIV
Sbjct: 57  ALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWIV 116

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI LRS+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 117 FEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 176

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRC+F  HDKTMLIGADP+HV DR
Sbjct: 177 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCYFGQHDKTMLIGADPTHVGDR 236

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNYTRNWGIYAVCASV+SQIYSQ NIYEAGQ
Sbjct: 237 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQ 296

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA 353
           KK+AFKYL+EKA+DKE+AR+  IRSEGDL     +AGLM E GE  MFHPSE+Y TWTV 
Sbjct: 297 KKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVE 356

Query: 354 ERTDNLKQLLQRCTGWQDVQCPAD 377
             TD+LKQ+LQ CTGWQ V  PAD
Sbjct: 357 PPTDSLKQVLQHCTGWQCVPRPAD 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488640|gb|ABK96132.1| unknown [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 317/386 (82%), Gaps = 12/386 (3%)

Query: 1   MGNSHGHHHHH--RNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTM----- 53
           MGNSH H HH   RN  N   P +T +         P     +QP      NS++     
Sbjct: 1   MGNSHAHGHHRKFRNNGNVPSPDKTASAP---SPSQPVPPSIYQPEHPLIPNSSIHASSM 57

Query: 54  --SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLW 111
             SLPY+HVD +LRALA QAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR+GCR KEPLW
Sbjct: 58  ATSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLW 117

Query: 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDV 171
           IVFEVSGTI L S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDV
Sbjct: 118 IVFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDV 177

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
           D IQIKPKSKHIWIDRCSLRDYDDGLIDI RESTDITVSRCHF+ HDKT+LIGADP+HV 
Sbjct: 178 DGIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVG 237

Query: 232 DRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 291
           DRCIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNY RNWGIYAVCASV+SQIYSQCNIYEA
Sbjct: 238 DRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEA 297

Query: 292 GQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT 351
           GQKK+AFKYL+EKA+DKEEA + CIRSEGDL  +  +AGLMAE GE  MFHPSE+Y TWT
Sbjct: 298 GQKKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMAEDGEFCMFHPSEYYPTWT 357

Query: 352 VAERTDNLKQLLQRCTGWQDVQCPAD 377
           +   TD+LKQ+LQ CTGWQ V  PAD
Sbjct: 358 IEPPTDSLKQVLQHCTGWQCVPRPAD 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439836|ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 284/377 (75%), Positives = 307/377 (81%), Gaps = 9/377 (2%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MG +HG        + ++  H TP  T  P    P+      P+   + N +  LPYAHV
Sbjct: 1   MGGAHG------RCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMS-CLPYAHV 53

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVFEVSG I
Sbjct: 54  DSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGII 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
           HL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD IQIKP S
Sbjct: 114 HLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 173

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRCIRVTIH
Sbjct: 174 KHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIH 233

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG KK+AFKY
Sbjct: 234 HCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKY 293

Query: 301 LTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLK 360
           LTEKA+DKEE RT C+RSEGDL     +AGLM  A E  MFHP E Y TWTV   +D LK
Sbjct: 294 LTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEAPSDALK 351

Query: 361 QLLQRCTGWQDVQCPAD 377
           Q+L  CTGWQ V  PAD
Sbjct: 352 QVLHHCTGWQCVPRPAD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092007|ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|222855411|gb|EEE92958.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/324 (83%), Positives = 293/324 (90%)

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           SLPY+HVD +LRALA QAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR+GCR KEPLWIV
Sbjct: 4   SLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWIV 63

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI L S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 64  FEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 123

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDI RESTDITVSRCHF+ HDKT+LIGADP+HV DR
Sbjct: 124 IQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGDR 183

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNY RNWGIYAVCASV+SQIYSQCNIYEAGQ
Sbjct: 184 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAGQ 243

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA 353
           KK+AFKYL+EKA+DKEEA + CIRSEGDL  +  +AGLM E GE  MFHPSE+Y TWTV 
Sbjct: 244 KKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMTEDGEVCMFHPSEYYPTWTVE 303

Query: 354 ERTDNLKQLLQRCTGWQDVQCPAD 377
             TD+LKQ+LQ CTGWQ V  PAD
Sbjct: 304 PPTDSLKQVLQHCTGWQCVPRPAD 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140117|ref|XP_002323433.1| predicted protein [Populus trichocarpa] gi|222868063|gb|EEF05194.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/324 (83%), Positives = 292/324 (90%)

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           +LPY HVD SLRALA QAEGFGR A GGLHGP+Y+VTTLADDGPGSLR+GCR KEPLWIV
Sbjct: 4   ALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWIV 63

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI LRS+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 64  FEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 123

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRC+F  HDKTMLIGADP+HV DR
Sbjct: 124 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCYFGQHDKTMLIGADPTHVGDR 183

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNYTRNWGIYAVCASV+SQIYSQ NIYEAGQ
Sbjct: 184 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQ 243

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA 353
           KK+AFKYL+EKA+DKE+AR+  IRSEGDL     +AGLM E GE  MFHPSE+Y TWTV 
Sbjct: 244 KKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVE 303

Query: 354 ERTDNLKQLLQRCTGWQDVQCPAD 377
             TD+LKQ+LQ CTGWQ V  PAD
Sbjct: 304 PPTDSLKQVLQHCTGWQCVPRPAD 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741529|emb|CBI32661.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/323 (84%), Positives = 287/323 (88%), Gaps = 2/323 (0%)

Query: 55  LPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVF 114
           LPYAHVD +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVF
Sbjct: 4   LPYAHVDSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVF 63

Query: 115 EVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAI 174
           EVSG IHL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD I
Sbjct: 64  EVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGI 123

Query: 175 QIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC 234
           QIKP SKHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRC
Sbjct: 124 QIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRC 183

Query: 235 IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
           IRVTIHHCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG K
Sbjct: 184 IRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHK 243

Query: 295 KMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAE 354
           K+AFKYLTEKA+DKEE RT C+RSEGDL     +AGLM  A E  MFHP E Y TWTV  
Sbjct: 244 KVAFKYLTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEA 301

Query: 355 RTDNLKQLLQRCTGWQDVQCPAD 377
            +D LKQ+L  CTGWQ V  PAD
Sbjct: 302 PSDALKQVLHHCTGWQCVPRPAD 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548168|ref|XP_003542475.1| PREDICTED: probable pectate lyase 4-like [Glycine max]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/377 (71%), Positives = 304/377 (80%), Gaps = 14/377 (3%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MGNSHGH H  R   NS  P+  P P            H++ P     N++ +SLPY HV
Sbjct: 1   MGNSHGHRH--RKHGNSVPPNTVPPP------------HKYNPHPTTSNSTMLSLPYTHV 46

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LR+LA QAEGFGR AIGGLHGPL+ VT+LADDGPGSLR+ CR KEPLWIVFEVSGTI
Sbjct: 47  DTTLRSLAAQAEGFGRFAIGGLHGPLHPVTSLADDGPGSLRDACRRKEPLWIVFEVSGTI 106

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
            L S+L+VSS+KTIDGRGQR+KL+GKGLRLKECEHVIICNLEFEGG+G DVDAIQIKP S
Sbjct: 107 QLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNS 166

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRC+L D+DDGLIDITRESTDIT+SRCHFS HDK MLIGADP+HV DRC+RVTIH
Sbjct: 167 KHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPTHVGDRCMRVTIH 226

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFF+GTRQR PRVR+AKVHLYNNY RNWGIYAVCASV+SQI+SQ NIYEAGQKK+AFKY
Sbjct: 227 HCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKY 286

Query: 301 LTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLK 360
           LTEKA+DKE   T  IRSEGD+     + GLM E    NMFHPSEHY +WTV   TD+LK
Sbjct: 287 LTEKAADKEVGATGTIRSEGDIFLNGAQKGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLK 346

Query: 361 QLLQRCTGWQDVQCPAD 377
           Q+L  CTGWQ +  PAD
Sbjct: 347 QILHHCTGWQSLAKPAD 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587404|ref|XP_002534262.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis] gi|223525624|gb|EEF28121.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/384 (74%), Positives = 309/384 (80%), Gaps = 7/384 (1%)

Query: 1   MGNSHGHHHHHRNEA--NSYFPHQTPTPTPPPF-KFGPSDHHQHQPAAQFQNNSTMSLPY 57
           MGNSHGH HHHR     N   P     P PP   K G    +Q+Q     QN    SLPY
Sbjct: 1   MGNSHGHGHHHRKNPIHNGANPKTEAAPPPPAVNKHGLQPLNQNQNQDLKQNTMVTSLPY 60

Query: 58  AHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVS 117
           AHVD SLRALAGQAEGFGR AIGG HG LYHVTTL+DDGPGSLR+GCR KEPLWIVFEVS
Sbjct: 61  AHVDSSLRALAGQAEGFGRFAIGGFHGQLYHVTTLSDDGPGSLRDGCRKKEPLWIVFEVS 120

Query: 118 GTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP----DVDA 173
           GTIHL S+LSVSSYKTIDGRGQ++KLTGKGLRLKECEHVI+CNLEFEGG+G     DVDA
Sbjct: 121 GTIHLHSYLSVSSYKTIDGRGQQIKLTGKGLRLKECEHVIVCNLEFEGGRGXXRGHDVDA 180

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRCHFS HDKTMLIGADPSH+ DR
Sbjct: 181 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHIGDR 240

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGT QRHPRVR+ KVHLYNNYTRNWGIYAVCASV++QIYSQ NIYEA Q
Sbjct: 241 CIRVTIHHCFFDGTHQRHPRVRFGKVHLYNNYTRNWGIYAVCASVEAQIYSQYNIYEAAQ 300

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA 353
           KK+AFKYLTEKA+DKEEA +  IRSEGD      +AGLM+E  EH  F+P E+Y TWTV 
Sbjct: 301 KKVAFKYLTEKAADKEEAVSGFIRSEGDFFVSGTQAGLMSETVEHCTFNPREYYPTWTVE 360

Query: 354 ERTDNLKQLLQRCTGWQDVQCPAD 377
             TD LK +LQ  TGWQ V  P D
Sbjct: 361 APTDALKNVLQHYTGWQCVPRPTD 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866065|emb|CAN80964.1| hypothetical protein VITISV_005608 [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/426 (66%), Positives = 307/426 (72%), Gaps = 58/426 (13%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MG +HG        + ++  H TP  T  P    P+      P+   + N +  LPYAHV
Sbjct: 1   MGGAHG------RCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMS-CLPYAHV 53

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVFEVSG I
Sbjct: 54  DSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGII 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
           HL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD IQIKP S
Sbjct: 114 HLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 173

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRCIRVTIH
Sbjct: 174 KHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIH 233

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG KK+AFKY
Sbjct: 234 HCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKY 293

Query: 301 LTE-------------------------------------------------KASDKEEA 311
           LTE                                                 KA+DKEE 
Sbjct: 294 LTEKLLCYSVADYLDMNAYLPPYSWVSXMPVEHGCRPMVDVEGIPPIIYHLVKAADKEEE 353

Query: 312 RTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD 371
           RT C+RSEGDL     +AGLM  A E  MFHP E Y TWTV   +D LKQ+L  CTGWQ 
Sbjct: 354 RTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEAPSDALKQVLHHCTGWQC 411

Query: 372 VQCPAD 377
           V  PAD
Sbjct: 412 VPRPAD 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157674317|gb|ABV60263.1| pectate lyase 1 [Hevea brasiliensis]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/358 (74%), Positives = 292/358 (81%), Gaps = 13/358 (3%)

Query: 20  PHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAI 79
           P Q P+   PP    PS                ++LPYAHVDC+LRALAGQAEGFGR AI
Sbjct: 47  PPQVPSSAQPPHNQTPS-------------TMVITLPYAHVDCNLRALAGQAEGFGRHAI 93

Query: 80  GGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQ 139
           GG+ GPLYHVT+L DDGPGSLR+GCR KEPLWIVFEVSGTIHLRS LSVSSYKTIDGRGQ
Sbjct: 94  GGVRGPLYHVTSLLDDGPGSLRDGCRRKEPLWIVFEVSGTIHLRSFLSVSSYKTIDGRGQ 153

Query: 140 RVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199
            VKLTGKGLRLKECEHVIICNLE EGG+G DVD IQIKPKSKHIWIDR SLRDYDDGLID
Sbjct: 154 TVKLTGKGLRLKECEHVIICNLELEGGRGDDVDGIQIKPKSKHIWIDRRSLRDYDDGLID 213

Query: 200 ITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKV 259
           ITRESTDIT+SRC FS HDKT+LIG  P   +DR IRVTIHHCFFDGTRQRHPRVR+AKV
Sbjct: 214 ITRESTDITISRCRFSQHDKTILIGGHPPQSSDRYIRVTIHHCFFDGTRQRHPRVRFAKV 273

Query: 260 HLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSE 319
           HLYNNYTRNWGIYAVCASV+SQIYSQCNIY AG+KK+AFKYLTEKA DKE+A T  ++SE
Sbjct: 274 HLYNNYTRNWGIYAVCASVESQIYSQCNIYGAGEKKVAFKYLTEKAPDKEKAGTGYVKSE 333

Query: 320 GDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD 377
           GDL +   +AGLM+E+GEH  FHPSE+Y  WTV   T  LK+ LQ CTGWQ V  PAD
Sbjct: 334 GDLFTTGTQAGLMSESGEHCKFHPSEYYPEWTVEAPTAKLKKTLQHCTGWQCVPRPAD 391

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2100651	331	AT3G55140 [Arabidopsis thalian	0.859	0.978	0.768	1.3e-139
TAIR|locus:2074999	378	AT3G09540 [Arabidopsis thalian	0.883	0.880	0.692	2.6e-127
TAIR|locus:2204232	368	AT1G30350 [Arabidopsis thalian	0.631	0.646	0.408	1.2e-42
TAIR|locus:2086656	412	AT3G27400 [Arabidopsis thalian	0.397	0.364	0.416	1.7e-39
TAIR|locus:2082667	501	PMR6 "powdery mildew resistant	0.671	0.504	0.396	2.3e-39
TAIR|locus:2179949	518	AT5G04310 [Arabidopsis thalian	0.411	0.299	0.395	8.6e-36
TAIR|locus:2005487	470	AT4G13710 [Arabidopsis thalian	0.400	0.321	0.412	1.2e-34
TAIR|locus:2162182	392	AT5G55720 [Arabidopsis thalian	0.591	0.568	0.385	4.6e-34
TAIR|locus:2093761	452	AT3G24230 [Arabidopsis thalian	0.461	0.384	0.366	9.6e-34
TAIR|locus:2161992	432	AT5G63180 [Arabidopsis thalian	0.400	0.349	0.374	3.3e-32

TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 249/324 (76%), Positives = 281/324 (86%)

Query:    54 SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
             SLPYA  DCSLRALAG+AEGFGR A+GGLHG LY VT+LADDGPG+LREG R KEPLWIV
Sbjct:     3 SLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLWIV 62

Query:   114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
             F VSGTI+L S+LSVSSYKTIDGRGQR+KLTGKG+RLKECEH+IICNLEFEGG+G DVD 
Sbjct:    63 FAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDG 122

Query:   174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
             IQIKPKS+HIWIDRCSLRDYDDGLIDITR+STDITVSRC+F+ HDKTMLIGADPSHV DR
Sbjct:   123 IQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVEDR 182

Query:   234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
             CIRVTIHHCFFDGTRQR PR+R+ KVHLYNNYTRNWGIYAVCASV++Q++SQCNIYEAG 
Sbjct:   183 CIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEAGV 242

Query:   294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA 353
             KK  F+Y +EKA+DKEEART  +RSE DL     +  LM  A E  +FHPSEHY TWTV 
Sbjct:   243 KKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMTGASEECVFHPSEHYPTWTVE 302

Query:   354 ERTDNLKQLLQRCTGWQDVQCPAD 377
               ++ LKQ++Q CTGWQ +  P+D
Sbjct:   303 PPSETLKQIMQICTGWQSLSRPSD 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 232/335 (69%), Positives = 277/335 (82%)

Query:    43 PAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRE 102
             P++   ++ T+  PY HVD SLR+LAG+AEGFGR A+GGL+GP+ HVT+LAD+GPGSLRE
Sbjct:    40 PSSPSDHHMTVG-PYCHVDSSLRSLAGKAEGFGRAAVGGLNGPICHVTSLADEGPGSLRE 98

Query:   103 GCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE 162
              C+  EPLWIVF+VSGTI+L S ++VSS+ T+DGRGQ+VK+TGKGLRLKECE+VIICNLE
Sbjct:    99 ACKRPEPLWIVFDVSGTINLSSFVNVSSHTTVDGRGQKVKITGKGLRLKECENVIICNLE 158

Query:   163 FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML 222
             FEGG GPD DAIQIKPKS +IWIDRCSL++Y DGLIDITRESTDITVSRCHF +H+KTML
Sbjct:   159 FEGGVGPDADAIQIKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRCHFMNHNKTML 218

Query:   223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQI 282
             IGAD SHV DRCIRVTIHHCFFDGTRQRHPRVR+AKVHL+NNYTR+W IYAV A V+SQI
Sbjct:   219 IGADTSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWAIYAVGAGVESQI 278

Query:   283 YSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFH 342
             +SQCNIYEAG+KK  FKY+TEKA+DKE+     +RSEGDL     K+ L ++ GE  +F 
Sbjct:   279 HSQCNIYEAGEKKTVFKYITEKAADKEKPGAGFVRSEGDLLLNGAKSCL-SQGGERYVFS 337

Query:   343 PSEHYYTWTVAERTDNLKQLLQRCTGWQDVQCPAD 377
             P +HY  WTV   TD LK  L+  TGWQ++  P D
Sbjct:   338 PIQHYSEWTVESPTDILKNYLKHSTGWQNLPLPLD 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 102/250 (40%), Positives = 151/250 (60%)

Query:    65 RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
             +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I
Sbjct:    53 QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query:   121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQ 175
              L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I+
Sbjct:   113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query:   176 IKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCI 235
             +  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +
Sbjct:   173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query:   236 RVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
             RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K
Sbjct:   232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query:   295 KMAFKYLTEK 304
             + + K +T++
Sbjct:   292 RSS-KQVTKR 300

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
 Identities = 65/156 (41%), Positives = 87/156 (55%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + HDK ML+G   S+
Sbjct:   210 DGDAVAIFG-GKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSY 268

Query:   230 VADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCN 287
               D+ ++VTI  +H F +G  QR PR R+   H+ NN   +W +YA+  S    IYSQ N
Sbjct:   269 TQDKNMQVTIAFNH-FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGN 327

Query:   288 IYEAGQKKMAFKYLTEKASDKEEARTDCI-RSEGDL 322
              + A   +   K +T+     E    D   RSEGD+
Sbjct:   328 RFLAPNTRFN-KEVTKHEDAPESKWRDWNWRSEGDM 362

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 109/275 (39%), Positives = 149/275 (54%)

Query:    67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
             LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I 
Sbjct:    99 LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query:   122 LRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDV 171
             L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D 
Sbjct:   159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query:   172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
             D I I    K IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  
Sbjct:   219 DGISIFGSQK-IWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query:   232 DRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289
             D  ++VTI  +H F  G  QR PR R   +H+ NN    W +YA+  S +  I SQ N Y
Sbjct:   278 DTGMQVTIAFNH-FGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRY 336

Query:   290 EAGQKKMAFKYLTEKASDKEEARTDCI--RSEGDL 322
              A     A K +T++   K++        R+EGDL
Sbjct:   337 SAPSDPSA-KEVTKRVDSKDDGEWSNWNWRTEGDL 370

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0042547 "cell wall modification involved in multidimensional cell growth" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 8.6e-36, Sum P(2) = 8.6e-36
 Identities = 64/162 (39%), Positives = 91/162 (56%)

Query:   165 GGKG-PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLI 223
             G +G  D D I +   S HIW+D CSL    DGLID+   ST +T+S  +FS HD+ ML+
Sbjct:   235 GFRGVSDGDGISVSA-SHHIWVDHCSLGYCADGLIDVILASTAVTISNNYFSHHDEVMLL 293

Query:   224 GADPSHVADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQ 281
             G D  + AD+ ++VTI  +H F +G  QR PR R+  +H+ NN    W +YA+  S    
Sbjct:   294 GHDDRYTADKGMQVTIAFNH-FGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPT 352

Query:   282 IYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCI-RSEGDL 322
             I SQ N Y A     A K +T++    E+  +    R+EGD+
Sbjct:   353 INSQGNRYTAPIDPNA-KEVTKRVDSNEKHWSGWNWRTEGDV 393

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
 Identities = 64/155 (41%), Positives = 89/155 (57%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D DA+ I   S HIWID  SL    DGL+D    ST ITVS  HF+ H++ ML+G   S+
Sbjct:   268 DGDAVSIFGSS-HIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSY 326

Query:   230 VADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNI 288
               D+ ++VTI ++ F +G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N 
Sbjct:   327 TKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNR 386

Query:   289 YEAGQKKMAFKYLTEKA-SDKEEARTDCIRSEGDL 322
             Y A   + A K +T++  +D  E +    RSEGDL
Sbjct:   387 YAAPMDRFA-KEVTKRVETDASEWKKWNWRSEGDL 420

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2162182 AT5G55720 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 93/241 (38%), Positives = 130/241 (53%)

Query:    97 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEH 155
             PG+LR      +PLWI+F+    I L+  L V+SYKTIDGRG  V++  G  L L +  +
Sbjct:   103 PGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSN 162

Query:   156 VIICNLEFEG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203
             +II NL                G   D D I I  +S+ IWID C+L    DGLID    
Sbjct:   163 IIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNG 221

Query:   204 STDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLY 262
             STDIT+S  +  +H++ ML+G    +  DR +RVTI   +F +G  QR PR R+   H+ 
Sbjct:   222 STDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIV 281

Query:   263 NNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLT--EKASDKEEARTDCIRSEG 320
             NN  R+W +YA+  S +  I+SQ N++ A   +   K +T  E A   EE +    +SEG
Sbjct:   282 NNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFT-KEVTKRESADGDEEWKEWNWKSEG 340

Query:   321 D 321
             D
Sbjct:   341 D 341

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 9.6e-34, Sum P(2) = 9.6e-34
 Identities = 67/183 (36%), Positives = 103/183 (56%)

Query:   147 GLRLKECE---HVIICNLEFEGG-KGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT 201
             GL + +C+   +V + +   + G +G  D DAI I   S HIWID  SL +  DGL+D+ 
Sbjct:   222 GLHIHDCKRTGNVTVRSSPSQAGFRGTADGDAINIFGSS-HIWIDHNSLSNCTDGLVDVV 280

Query:   202 RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVH 260
               ST IT+S  HF+ HD+ ML+G + S+  D+ ++VT+ ++ F +G  QR PR R+   H
Sbjct:   281 NGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFH 340

Query:   261 LYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCI-RSE 319
             + NN   +W +YA+  S +  I SQ N + A  K  + K +T++   K     +   RSE
Sbjct:   341 VVNNDYTHWKMYAIGGSANPTINSQGNRF-AAPKNHSAKEVTKRLDTKGNEWMEWNWRSE 399

Query:   320 GDL 322
              DL
Sbjct:   400 KDL 402

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 58/155 (37%), Positives = 88/155 (56%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D D + I   S H+W+D CSL + +DGLID  R ST IT+S  + + H+K ML+G   ++
Sbjct:   228 DGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTY 286

Query:   230 VADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCN 287
               D+ ++VTI  +H F +G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N
Sbjct:   287 EQDKNMQVTIAFNH-FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGN 345

Query:   288 IYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
              + A     + +    + + ++E R    RSEGDL
Sbjct:   346 RFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDL 380

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
smart00656	190	smart00656, Amb_all, Amb_all domain	2e-68
COG3866	345	COG3866, PelB, Pectate lyase [Carbohydrate transpo	3e-43
pfam00544	200	pfam00544, Pec_lyase_C, Pectate lyase	2e-38

>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain

 Score =  213 bits (544), Expect = 2e-68
 Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 13/179 (7%)

Query: 126 LSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG---GKGPDVDAIQIKPKSKH 182
           + ++S KTIDGRG +V++ G GL +K   +VII NL         G D DAI I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSN 70

Query: 183 IWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           +WID  SL             DGLIDI   ST +T+S  +F +H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292
            +RVTI H +F   RQR PRVR+  VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190

>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]

 Score =  153 bits (388), Expect = 3e-43
 Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 80  GGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL------RSHLSVSSYKT 133
           GG  G +  V T  D     L           ++  V GTI        +  + + S KT
Sbjct: 50  GGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKT 104

Query: 134 IDGRGQRVKLTGKGLRLKECEHVIICNLEFEG-GKG-PDVDAIQIKPKSKHIWIDRCSLR 191
           I G G    L G GL++++  +VII NL FEG  +G P+ DAI I     +IWID  +  
Sbjct: 105 IVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFS 164

Query: 192 DYD--------DGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADRCIRVTIHHC 242
                      DGL+DI +++  IT+S   F  HDK+ L+G +D S+  D   +VTIHH 
Sbjct: 165 GGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHN 224

Query: 243 FFDGTRQRHPRVRYAKVHLYNNYTRNWGIY--AVCASVDSQIYSQCNIYEAGQKKMAF 298
           +F    QR PR+R+  VH+YNNY      +  A+     ++IY + N +E G + + F
Sbjct: 225 YFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGF 282

Length = 345

>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase

 Score =  136 bits (343), Expect = 2e-38
 Identities = 78/201 (38%), Positives = 105/201 (52%), Gaps = 23/201 (11%)

Query: 107 KEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKE-CEHVIICNLEFEG 165
           K+PL  V   + TI   + ++V + KTI GRG  V L   G+R+ +   +VII NL    
Sbjct: 1   KQPL--VITSNKTIDSLTKVNVGANKTIIGRGANVSLANIGIRITKNSSNVIIQNLRIHH 58

Query: 166 -----------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD--------DGLIDITRESTD 206
                      G   D DAIQI   S +IWID CSL  ++        DGL+DI   ST 
Sbjct: 59  NIRVNPHHEGPGGAKDGDAIQID-NSGNIWIDHCSLSGHNFSDDDGSFDGLVDIKEGSTY 117

Query: 207 ITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYT 266
           +T+S C F++H K ML G   S+  D+ +RVT+ H +F+   QR PR RY   H+YNN  
Sbjct: 118 VTISNCLFTNHKKVMLFGHSDSNSQDKGMRVTLAHNYFNNVNQRMPRCRYGYFHVYNNLY 177

Query: 267 RNWGIYAVCASVDSQIYSQCN 287
            NW  YA   S +  I S+ N
Sbjct: 178 VNWFQYAFGGSQNGTILSEGN 198

This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	100.0
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	100.0
smart00656	190	Amb_all Amb_all domain.	100.0
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.19
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	98.96
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	98.37
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.29
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	98.19
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	98.17
PLN02218	431	polygalacturonase ADPG	98.13
PLN02218	431	polygalacturonase ADPG	98.02
PLN03003	456	Probable polygalacturonase At3g15720	98.01
PLN02793	443	Probable polygalacturonase	98.01
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.93
PLN02155	394	polygalacturonase	97.91
PLN02480	343	Probable pectinesterase	97.91
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	97.77
PLN03010	409	polygalacturonase	97.72
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	97.72
PLN02197	588	pectinesterase	97.71
PLN02793	443	Probable polygalacturonase	97.69
PLN03003	456	Probable polygalacturonase At3g15720	97.68
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.66
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	97.64
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.61
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.61
PLN03010	409	polygalacturonase	97.54
PLN02176	340	putative pectinesterase	97.38
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.35
PLN02155	394	polygalacturonase	97.32
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.3
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	97.28
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	97.26
PLN02432	293	putative pectinesterase	97.24
PLN02773	317	pectinesterase	97.23
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	97.22
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	97.21
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	97.12
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	97.08
PLN02497	331	probable pectinesterase	96.98
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	96.97
smart00656	190	Amb_all Amb_all domain.	96.97
PLN02301	548	pectinesterase/pectinesterase inhibitor	96.97
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	96.9
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	96.86
PLN02665	366	pectinesterase family protein	96.84
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	96.81
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	96.78
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	96.77
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	96.76
PLN02304	379	probable pectinesterase	96.76
PLN02313	587	Pectinesterase/pectinesterase inhibitor	96.74
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	96.68
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	96.68
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	96.64
PLN02682	369	pectinesterase family protein	96.64
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	96.61
PLN02314	586	pectinesterase	96.53
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	96.38
PLN02634	359	probable pectinesterase	96.26
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	96.17
PLN02916	502	pectinesterase family protein	96.07
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	95.83
PRK10531	422	acyl-CoA thioesterase; Provisional	95.68
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	95.68
PLN02671	359	pectinesterase	95.51
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	95.04
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	93.82
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	90.79
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	89.08
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	87.71
COG4677	405	PemB Pectin methylesterase [Carbohydrate transport	87.52

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-62  Score=466.98  Aligned_cols=285  Identities=31%  Similarity=0.492  Sum_probs=240.0

Q ss_pred             CcccccC-------CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec------ceeEeccCcceee
Q 017111           70 QAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVSSYKTIDG  136 (377)
Q Consensus        70 ~a~Gfg~-------~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~------~~l~V~sn~TI~G  136 (377)
                      ..+|||.       +||||.||.+++|+|.+|     |..++++.+|.++|+.|.|+|+++      ..|++.+||||.|
T Consensus        33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG  107 (345)
T COG3866          33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVG  107 (345)
T ss_pred             cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEe
Confidence            4678875       589999999999999999     999999999997777799999987      4577889999999


Q ss_pred             cccceEEeCCcEEEeeeccEEEeeeEEeCCCCCC--CCceEecCCCceEEEEceeeec--------CCCCceEeeeCCce
Q 017111          137 RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPD--VDAIQIKPKSKHIWIDRCSLRD--------YDDGLIDITRESTD  206 (377)
Q Consensus       137 ~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~~~--~DaI~i~~~s~nVwIDHcs~s~--------~~Dglidi~~~s~~  206 (377)
                      .|..++|.|++|.|+.+.|||||||+|++-...|  .|+|+|+..++|||||||+|..        ..||++||++++++
T Consensus       108 ~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any  187 (345)
T COG3866         108 SGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY  187 (345)
T ss_pred             eccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence            9999999999999999999999999999865433  5999997689999999999998        68999999999999


Q ss_pred             EEEeCceecCCCceeEecCCCCC-CCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeec--CCceEE
Q 017111          207 ITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCAS--VDSQIY  283 (377)
Q Consensus       207 vTIS~n~f~~h~k~~LiG~~d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~--~~a~v~  283 (377)
                      ||||||+|++|+|.+|+|++|+. .+|+..+||||||||+|+.||+||+|||.+||+||||+....|++..+  ..|+++
T Consensus       188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Akiy  267 (345)
T COG3866         188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIY  267 (345)
T ss_pred             EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEE
Confidence            99999999999999999999874 456779999999999999999999999999999999996655555444  459999


Q ss_pred             EEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeecccccccccccCCcccccCCCCCCcccccchHHHHHHHH
Q 017111          284 SQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLL  363 (377)
Q Consensus       284 ~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv  363 (377)
                      +|+|||+.+..+..|-.      +  ...+|||..+-+.|++.+......  .+...|.|+++| +|++++++ .||++|
T Consensus       268 vE~NyF~~~~~~~~f~d------t--~~~~GY~~~d~gsy~~~s~~~~~~--~~G~~w~ps~~Y-~Ytvd~~~-dVks~V  335 (345)
T COG3866         268 VENNYFENGSEGLGFLD------T--KGTSGYANQDSGSYLNSSKSMSVR--AGGVTWNPSSYY-SYTVDPPE-DVKSFV  335 (345)
T ss_pred             EecceeccCCCCceeee------c--CCccceEEeccCceecccCCcccc--cCCccCCCCCCc-ccccCChH-Hhhhhh
Confidence            99999999876654421      1  112499996555565544322112  233789999977 49999985 799999


Q ss_pred             HhCcCCCc
Q 017111          364 QRCTGWQD  371 (377)
Q Consensus       364 ~~~AG~~~  371 (377)
                      .++||++-
T Consensus       336 t~yAGaGk  343 (345)
T COG3866         336 TNYAGAGK  343 (345)
T ss_pred             hcccccee
Confidence            99999763

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=100.00  E-value=6.1e-52  Score=384.08  Aligned_cols=177  Identities=46%  Similarity=0.750  Sum_probs=158.1

Q ss_pred             EEEEeceEEEecceeEeccCcceeecccceEEeCCcEEEe-eeccEEEeeeEEeCC----------C--CCCCCceEecC
Q 017111          112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP  178 (377)
Q Consensus       112 IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g----------~--~~~~DaI~i~~  178 (377)
                      +||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+..          .  ..+.|+|+|+ 
T Consensus         3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-   81 (200)
T PF00544_consen    3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-   81 (200)
T ss_dssp             EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred             EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence            4677999999999999999999999999999999999997 899999999999981          1  2568999998 


Q ss_pred             CCceEEEEceeeecC--------CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCC
Q 017111          179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR  250 (377)
Q Consensus       179 ~s~nVwIDHcs~s~~--------~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R  250 (377)
                      +++|||||||+|+|+        .||++|++.++++||||||+|.+|+|++|+|+++....|.+++||||||||+++.+|
T Consensus        82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R  161 (200)
T PF00544_consen   82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR  161 (200)
T ss_dssp             STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred             ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence            889999999999999        999999999999999999999999999999998877777779999999999999999


Q ss_pred             CCccccCeeEEEcceEEcCccceeeecCCceEEEEceeE
Q 017111          251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY  289 (377)
Q Consensus       251 ~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F  289 (377)
                      +||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus       162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            999999999999999999999999999999999999999

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>smart00656 Amb_all Amb_all domain

Probab=100.00  E-value=6.5e-48  Score=354.66  Aligned_cols=168  Identities=45%  Similarity=0.699  Sum_probs=157.7

Q ss_pred             ceeEeccCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecC-------
Q 017111          124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY-------  193 (377)
Q Consensus       124 ~~l~V~sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~-------  193 (377)
                      .+|.|+|||||+|+|++++|.|.+|++++++|||||||+|+++..   .+.|+|+++ ++++||||||+|+|.       
T Consensus        10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~   88 (190)
T smart00656       10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD   88 (190)
T ss_pred             ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence            468899999999999999999999999889999999999998754   568999997 799999999999998       


Q ss_pred             --CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCcc
Q 017111          194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI  271 (377)
Q Consensus       194 --~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~  271 (377)
                        .|+++|++.++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus        89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~  168 (190)
T smart00656       89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS  168 (190)
T ss_pred             CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence              899999999999999999999999999999998876555578999999999999999999999999999999999998


Q ss_pred             ceeeecCCceEEEEceeEecC
Q 017111          272 YAVCASVDSQIYSQCNIYEAG  292 (377)
Q Consensus       272 ~ai~~~~~a~v~~e~N~F~~g  292 (377)
                      |+++++.++++++|+|||+..
T Consensus       169 ~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      169 YAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             EeEecCCCcEEEEECeEEECC
Confidence            999999999999999999874

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.19  E-value=1.9e-09  Score=106.74  Aligned_cols=119  Identities=26%  Similarity=0.322  Sum_probs=77.5

Q ss_pred             HHHhhhcCCCeEEEEEeceEEEecceeEec-cCcceeecccc-eEEe-------CCcEEEeeeccEEEeeeEEeCCCCCC
Q 017111          100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKGPD  170 (377)
Q Consensus       100 Lr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~-sn~TI~G~G~g-~~I~-------G~gl~i~~a~NVIIRnL~ir~g~~~~  170 (377)
                      ||+|+.+..|..+|+--.|+.++++.|.|. +++||.|.|.. ..|.       +.+|.+. ++||.|++|+++...   
T Consensus         1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~---   76 (314)
T TIGR03805         1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK---   76 (314)
T ss_pred             CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence            688998888876666678999888889887 89999998753 4443       2346554 788888888887642   


Q ss_pred             CCceEecCCCceEEEEceeeecC--------CCCceEeeeCCceEEEeCceecC-CCceeEecC
Q 017111          171 VDAIQIKPKSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSS-HDKTMLIGA  225 (377)
Q Consensus       171 ~DaI~i~~~s~nVwIDHcs~s~~--------~Dglidi~~~s~~vTIS~n~f~~-h~k~~LiG~  225 (377)
                      .+||.+. ++++|.|++|.+.|.        .+| |.+ ..+.+++|.+|.++. .+.+..++.
T Consensus        77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv~~  137 (314)
T TIGR03805        77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYVGQ  137 (314)
T ss_pred             CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEECC
Confidence            3566664 566666666666543        234 334 245666666666654 233444443

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=98.96  E-value=7.7e-09  Score=105.54  Aligned_cols=193  Identities=16%  Similarity=0.235  Sum_probs=97.6

Q ss_pred             ecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEec------cCcceeec-ccceEEeCCc-EEEeeeccEEEee
Q 017111           89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVIICN  160 (377)
Q Consensus        89 VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~------sn~TI~G~-G~g~~I~G~g-l~i~~a~NVIIRn  160 (377)
                      |+|+++     |++||++..|...|+..+|+.+ ...|.+.      ..+||..+ ..++.|.|.. |+|. ++.++|.+
T Consensus         1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G   73 (425)
T PF14592_consen    1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG   73 (425)
T ss_dssp             E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred             CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence            566666     9999998877777777899997 3356652      56899887 4578888874 7886 78999999


Q ss_pred             eEEeCCCCCC---------C-----CceEec-----------------------CCCceEEEEceeeecC--CCCceEee
Q 017111          161 LEFEGGKGPD---------V-----DAIQIK-----------------------PKSKHIWIDRCSLRDY--DDGLIDIT  201 (377)
Q Consensus       161 L~ir~g~~~~---------~-----DaI~i~-----------------------~~s~nVwIDHcs~s~~--~Dglidi~  201 (377)
                      |.|+.|....         .     +-.++.                       -.+++--||||.|..-  ..-+|-+.
T Consensus        74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~  153 (425)
T PF14592_consen   74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR  153 (425)
T ss_dssp             -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred             eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence            9998652100         0     011110                       0133444699999752  23333332


Q ss_pred             -------eCCceEEEeCceecC-------CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccCeeEEEcce
Q 017111          202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYAKVHLYNNY  265 (377)
Q Consensus       202 -------~~s~~vTIS~n~f~~-------h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~--r~G~~hv~NN~  265 (377)
                             ....+-+|.+|+|..       ...++-||.+.....+  -+.++-+|||.+|.+-.=-+  +-+...++||.
T Consensus       154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt  231 (425)
T PF14592_consen  154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT  231 (425)
T ss_dssp             -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred             ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence                   124577899999984       3457788876433222  27899999999999875444  33566777787


Q ss_pred             EEcCccceeeecCCceEEEEceeEec
Q 017111          266 TRNWGIYAVCASVDSQIYSQCNIYEA  291 (377)
Q Consensus       266 ~~n~~~~ai~~~~~a~v~~e~N~F~~  291 (377)
                      |++... .+..|-+-.-.+++|+|..
T Consensus       232 f~es~G-~ltlRHGn~n~V~gN~FiG  256 (425)
T PF14592_consen  232 FRESQG-SLTLRHGNRNTVEGNVFIG  256 (425)
T ss_dssp             EES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred             EEeccc-eEEEecCCCceEeccEEec
Confidence            776532 3444444444456666654

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=98.37  E-value=2e-05  Score=81.24  Aligned_cols=112  Identities=15%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             hhHHHhhhcCC-CeEEEEEeceEEEecceeEeccCcceeecccceE---EeCCc-EE-EeeeccEEEeeeEEeCCC---C
Q 017111           98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGK---G  168 (377)
Q Consensus        98 GSLr~Ai~~~~-Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~---I~G~g-l~-i~~a~NVIIRnL~ir~g~---~  168 (377)
                      -.|++||++.. +...|.-..|+. +..+|.+.+++||.|+ .+++   |.|.+ +. -..++||.|++|+|++..   .
T Consensus        55 ~ALQaAIdaAa~gG~tV~Lp~G~Y-~~G~L~L~spltL~G~-~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~  132 (455)
T TIGR03808        55 RALQRAIDEAARAQTPLALPPGVY-RTGPLRLPSGAQLIGV-RGATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP  132 (455)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCce-ecccEEECCCcEEEec-CCcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence            34999987632 332233366876 3377999999999998 3454   66654 22 236999999999999753   1


Q ss_pred             CCCCceEecCCCceEEEEceeeecC-CCCceEeeeCCceEEEeCceec
Q 017111          169 PDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       169 ~~~DaI~i~~~s~nVwIDHcs~s~~-~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      ...-+|.+. +++++-|.+|+|.+. ..| |.+. +++ ..|+.|.|.
T Consensus       133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~  176 (455)
T TIGR03808       133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTIT  176 (455)
T ss_pred             CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEe
Confidence            234578885 899999999999998 488 6663 455 444444443

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.29  E-value=1.6e-05  Score=68.09  Aligned_cols=133  Identities=18%  Similarity=0.267  Sum_probs=89.7

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      ||.+.+..++.|++.+|+..   ..+||.+. ....+.|+.|+|.+...+ |.+. ...+++|++|.|.+...+..+-..
T Consensus         2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~   75 (158)
T PF13229_consen    2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS   75 (158)
T ss_dssp             CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred             EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence            67787788899999999975   36899997 677789999999995555 6774 458999999999988754444322


Q ss_pred             CCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcceEEcCccceeeecCCc--eEEEEceeEecCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQ  293 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~ai~~~~~a--~v~~e~N~F~~g~  293 (377)
                              -.+++.+|.|.++..-.=.+.  ...+.+.||.+.+-...++......  .+.+++|.|....
T Consensus        76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~  138 (158)
T PF13229_consen   76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG  138 (158)
T ss_dssp             --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred             --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence                    267888888888765433333  2357899999988776777666655  8888999988754

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=98.19  E-value=0.00013  Score=72.43  Aligned_cols=154  Identities=15%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             cCcceeecccceEEe---CCcEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCceEeee
Q 017111          130 SYKTIDGRGQRVKLT---GKGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR  202 (377)
Q Consensus       130 sn~TI~G~G~g~~I~---G~gl~i~~a~NVIIRnL~ir~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~  202 (377)
                      +++||.+.    +|.   +.+|.+..++|++||++++.....    ...+||.+. .++++.|.+|.++...|--|-+ .
T Consensus        63 ~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~  136 (314)
T TIGR03805        63 DDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-G  136 (314)
T ss_pred             CCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-C
Confidence            56666654    222   347888889999999999974321    236789886 7999999999999887744667 4


Q ss_pred             CCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC--------CccccCeeEEEcceEEcCc----
Q 017111          203 ESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWG----  270 (377)
Q Consensus       203 ~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--------Pr~r~G~~hv~NN~~~n~~----  270 (377)
                      .+++++|++|.+.+..++..+-.+.        ++.+.+|.+.++..--        |......+.|+||.+.+..    
T Consensus       137 ~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~  208 (314)
T TIGR03805       137 QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNF  208 (314)
T ss_pred             CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCC
Confidence            6889999999998777777665432        3556666665543211        1111134667777665321    


Q ss_pred             ------------cceeeecCCceEEEEceeEecCCccce
Q 017111          271 ------------IYAVCASVDSQIYSQCNIYEAGQKKMA  297 (377)
Q Consensus       271 ------------~~ai~~~~~a~v~~e~N~F~~g~~~~~  297 (377)
                                  ..++.......+.+++|.|.......+
T Consensus       209 ~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i  247 (314)
T TIGR03805       209 APAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV  247 (314)
T ss_pred             cccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence                        112222233567888999988765433

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=98.17  E-value=0.00011  Score=67.26  Aligned_cols=173  Identities=17%  Similarity=0.239  Sum_probs=97.2

Q ss_pred             hHHHhh--hcCCCeEEEEEeceEEEecceeEeccCcceeecccce-EEe--CC--cE-------EEee-ecc--EEEeee
Q 017111           99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRV-KLT--GK--GL-------RLKE-CEH--VIICNL  161 (377)
Q Consensus        99 SLr~Ai--~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~-~I~--G~--gl-------~i~~-a~N--VIIRnL  161 (377)
                      .|++||  .+....-+|+-..|++.++..|.+.++++|.|.|... .+.  +.  .+       .+.. ..+  +-|+||
T Consensus        20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl   99 (225)
T PF12708_consen   20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL   99 (225)
T ss_dssp             HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred             HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence            499999  3333344555589999999999999999999997643 333  11  11       1111 122  449999


Q ss_pred             EEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEe------CceecCCCceeEecCCCCCCCC
Q 017111          162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS------RCHFSSHDKTMLIGADPSHVAD  232 (377)
Q Consensus       162 ~ir~g~~~---~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS------~n~f~~h~k~~LiG~~d~~~~d  232 (377)
                      +|......   ...+|.+. .++++||++|++.......+.+. ..+..++.      ++.|++..+             
T Consensus       100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------  164 (225)
T PF12708_consen  100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN-------------  164 (225)
T ss_dssp             EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred             EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence            99976532   24678886 78999999999998755556664 12222222      222222111             


Q ss_pred             cceeEEEecceecCCCCCCCcccc--CeeEEEcceEEcCccceeeecCCceEEEEceeEecC
Q 017111          233 RCIRVTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (377)
Q Consensus       233 ~~~~VT~hhNlf~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g  292 (377)
                         .+.+...++.....-   +..  -.+.+.||++.+....++....+..+.+++|.|+..
T Consensus       165 ---~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~  220 (225)
T PF12708_consen  165 ---NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENC  220 (225)
T ss_dssp             ---EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESS
T ss_pred             ---EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECC
Confidence               111111111111111   111  145677777776555677666666777777777764

...

>PLN02218 polygalacturonase ADPG

Probab=98.13  E-value=0.00023  Score=73.76  Aligned_cols=100  Identities=20%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             eeccEEEeeeEEeCC-CCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCC
Q 017111          152 ECEHVIICNLEFEGG-KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV  230 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g-~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~  230 (377)
                      .++||+|+||+|... .....|||.+. .++||+|.+|.+.-+.| .|.++.++.+|+|++|.+. +..++-||+-....
T Consensus       222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~  298 (431)
T PLN02218        222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDD-CISIESGSQNVQINDITCG-PGHGISIGSLGDDN  298 (431)
T ss_pred             ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCc-eEEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence            345555555555542 12457999996 89999999999988755 5999999999999999985 34456788743221


Q ss_pred             -CCcceeEEEecceecCCCCCCCccc
Q 017111          231 -ADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       231 -~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                       .+.-.+|++.++.|.++. +.=|++
T Consensus       299 ~~~~V~nV~v~n~~~~~t~-nGvRIK  323 (431)
T PLN02218        299 SKAFVSGVTVDGAKLSGTD-NGVRIK  323 (431)
T ss_pred             CCceEEEEEEEccEEecCC-cceEEe
Confidence             222248899998887753 444554

>PLN02218 polygalacturonase ADPG

Probab=98.02  E-value=9.3e-05  Score=76.61  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |++.+++||.|++|+|+....+   .|.+. .+++|+|++.++..     ..|| ||+ ..+.+|+|++|.|..-+-+.-
T Consensus       195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa  268 (431)
T PLN02218        195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS  268 (431)
T ss_pred             EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence            6778899999999999986543   57776 78999999999864     6899 999 468999999999998887777


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-ccCeeEEEcceEEcCcccee--e-----ecCCceEEEEce
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAV--C-----ASVDSQIYSQCN  287 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai--~-----~~~~a~v~~e~N  287 (377)
                      |.+..       .+|++.++++.....       +.+.- ..-.++|.|+.+.+.. .++  -     .+.-..|.+++.
T Consensus       269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni  340 (431)
T PLN02218        269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI  340 (431)
T ss_pred             ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence            76531       267887777643211       11100 0014677777776643 233  1     112235777777


Q ss_pred             eEecCCccceee
Q 017111          288 IYEAGQKKMAFK  299 (377)
Q Consensus       288 ~F~~g~~~~~~~  299 (377)
                      .+++...+..+.
T Consensus       341 ~m~~V~~pI~Id  352 (431)
T PLN02218        341 QMENVKNPIIID  352 (431)
T ss_pred             EEEcccccEEEE
Confidence            777776665543

>PLN03003 Probable polygalacturonase At3g15720

Probab=98.01  E-value=0.00016  Score=75.14  Aligned_cols=104  Identities=24%  Similarity=0.454  Sum_probs=78.4

Q ss_pred             EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      +.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus       164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl  240 (456)
T PLN03003        164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL  240 (456)
T ss_pred             EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence            45567889999999998753 3567999996 899999999999887665 9999999999999999863 346778864


Q ss_pred             CCCC-CCcceeEEEecceecCCCCCCCccc
Q 017111          227 PSHV-ADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       227 d~~~-~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                      .... .+.-.+|++.++.|.++. +.=|++
T Consensus       241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK  269 (456)
T PLN03003        241 GKDGETATVENVCVQNCNFRGTM-NGARIK  269 (456)
T ss_pred             cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence            3221 122358999999998763 344654

>PLN02793 Probable polygalacturonase

Probab=98.01  E-value=7.6e-05  Score=77.48  Aligned_cols=118  Identities=21%  Similarity=0.347  Sum_probs=81.5

Q ss_pred             EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      |.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|- |.++.++.+|+|++|.+.. ..++-||+-
T Consensus       203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl  279 (443)
T PLN02793        203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL  279 (443)
T ss_pred             EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence            44556778888888887543 3467999996 899999999999876555 9998889999999999853 335678874


Q ss_pred             CC-CCCCcceeEEEecceecCCCCCCCcccc-----Ce---eEEEcceEEcC
Q 017111          227 PS-HVADRCIRVTIHHCFFDGTRQRHPRVRY-----AK---VHLYNNYTRNW  269 (377)
Q Consensus       227 d~-~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-----G~---~hv~NN~~~n~  269 (377)
                      .. .....-.+|++.++.|.++. +.=|++.     |.   +.+.|-...+.
T Consensus       280 g~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni~m~nv  330 (443)
T PLN02793        280 GKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNIFMENV  330 (443)
T ss_pred             cCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeEEEecC
Confidence            21 11122358999999988764 4445531     22   35555555554

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.93  E-value=0.00013  Score=75.07  Aligned_cols=102  Identities=22%  Similarity=0.405  Sum_probs=72.4

Q ss_pred             EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCC
Q 017111          149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP  227 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d  227 (377)
                      .+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+.-+.| .|.++.++++|+|++|.+. +..++-||+-.
T Consensus       182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~-~ghGisiGSlG  258 (404)
T PLN02188        182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCG-PGHGISVGSLG  258 (404)
T ss_pred             EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEc-CCCcEEeCCCC
Confidence            3334667777777776432 2457999996 89999999999998877 5999989999999999885 34467788732


Q ss_pred             C-CCCCcceeEEEecceecCCCCCCCcc
Q 017111          228 S-HVADRCIRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       228 ~-~~~d~~~~VT~hhNlf~~~~~R~Pr~  254 (377)
                      . .....-.+|++.++.|.++. +.=|+
T Consensus       259 ~~~~~~~V~nV~v~n~~~~~t~-~Giri  285 (404)
T PLN02188        259 RYPNEGDVTGLVVRDCTFTGTT-NGIRI  285 (404)
T ss_pred             CCCcCCcEEEEEEEeeEEECCC-cEEEE
Confidence            1 11122348999999888763 33344

>PLN02155 polygalacturonase

Probab=97.91  E-value=0.00011  Score=75.25  Aligned_cols=103  Identities=17%  Similarity=0.352  Sum_probs=75.0

Q ss_pred             EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      +.+..++||.|+||+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus       171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~  247 (394)
T PLN02155        171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSL  247 (394)
T ss_pred             EEEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEeccc
Confidence            34445677777777776532 3457999996 899999999999988775 8999889999999998874 346778874


Q ss_pred             CCC-CCCcceeEEEecceecCCCCCCCcc
Q 017111          227 PSH-VADRCIRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       227 d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~  254 (377)
                      ... ....-.+|++.++.|.+.. |.=|+
T Consensus       248 g~~~~~~~V~nV~v~n~~~~~t~-~GirI  275 (394)
T PLN02155        248 AKELNEDGVENVTVSSSVFTGSQ-NGVRI  275 (394)
T ss_pred             cccCCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence            221 1222358999999998753 34444

>PLN02480 Probable pectinesterase

Probab=97.91  E-value=0.0012  Score=66.58  Aligned_cols=99  Identities=10%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             hhHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeecccc-eEEeCC----------cEEEeeeccEEEe
Q 017111           98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLKECEHVIIC  159 (377)
Q Consensus        98 GSLr~Ai~~~----~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g-~~I~G~----------gl~i~~a~NVIIR  159 (377)
                      -||++||++.    ..+++|+--.|+.+  ++|.|   .+|+||.|.|.. ..|.+.          .|.|. +++++++
T Consensus        61 ~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a~  137 (343)
T PLN02480         61 TSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVAF  137 (343)
T ss_pred             ccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEEE
Confidence            4799998752    23555555679884  67888   367999998733 344321          25554 8999999


Q ss_pred             eeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017111          160 NLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       160 nL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                      ||+|+...+      ...-||.+.-.++++.+.+|.|.-..|-|++
T Consensus       138 nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~  183 (343)
T PLN02480        138 GISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFD  183 (343)
T ss_pred             eeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEe
Confidence            999998632      1234666644688999999999887777664

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=97.77  E-value=0.0016  Score=62.76  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             hHHHhhhcCCCeEEEEEeceEEEecc----eeEeccCcceeec----cc----------ceEEeCCc-------EEEeee
Q 017111           99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC  153 (377)
Q Consensus        99 SLr~Ai~~~~Pr~IVf~vsG~I~l~~----~l~V~sn~TI~G~----G~----------g~~I~G~g-------l~i~~a  153 (377)
                      +|.+|++...|..+|.--.|++.-..    +|.+.+.+||.|.    |.          +..|.|.+       +.|..+
T Consensus        17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~   96 (246)
T PF07602_consen   17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA   96 (246)
T ss_pred             HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence            47789988777777766789987543    5888889999985    22          22334433       444557


Q ss_pred             ccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC-CCCceEeee-----CCceEEEeCceecCCCce
Q 017111          154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITR-----ESTDITVSRCHFSSHDKT  220 (377)
Q Consensus       154 ~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~-~Dglidi~~-----~s~~vTIS~n~f~~h~k~  220 (377)
                      ++..|+.++|+......+-||.|+ .+ +.-|..|+|..+ .+| |.+..     ...+++|+.|.+.....+
T Consensus        97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~G-I~v~g~~~~~~i~~~vI~GN~~~~~~~G  166 (246)
T PF07602_consen   97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREG-IFVTGTSANPGINGNVISGNSIYFNKTG  166 (246)
T ss_pred             CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCcccc-EEEEeeecCCcccceEeecceEEecCcC
Confidence            788889999987643346688886 44 778899999985 555 43322     224566777766543333

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PLN03010 polygalacturonase

Probab=97.72  E-value=0.0036  Score=64.56  Aligned_cols=99  Identities=23%  Similarity=0.423  Sum_probs=60.5

Q ss_pred             eccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCC-C
Q 017111          153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH-V  230 (377)
Q Consensus       153 a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~-~  230 (377)
                      ++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.| .|.++.++++++|.++... ...++-||+-... .
T Consensus       188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDD-cIaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~  264 (409)
T PLN03010        188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDD-CIAINSGSSNINITQINCG-PGHGISVGSLGADGA  264 (409)
T ss_pred             cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCC-eEEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence            334444444443321 2357999996 78999999998887755 4899888777776655543 2235667764221 1


Q ss_pred             CCcceeEEEecceecCCCCCCCccc
Q 017111          231 ADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       231 ~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                      .+.-.+|++.++.|.+.. +.=|++
T Consensus       265 ~~~V~nV~v~n~~i~~t~-~GirIK  288 (409)
T PLN03010        265 NAKVSDVHVTHCTFNQTT-NGARIK  288 (409)
T ss_pred             CCeeEEEEEEeeEEeCCC-cceEEE
Confidence            122247888888887653 334443

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=97.72  E-value=0.00042  Score=59.25  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCc-eeEecC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TMLIGA  225 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k-~~LiG~  225 (377)
                      +|.+....++.|++-+|+.    ...+|.+. ...++.|+.|.|++... .+.+. .+..++|++|.|.+... ++.+..
T Consensus        25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~-~i~~~-~~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGS-GIYVS-GSSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SE-EEECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred             EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccc-eEEEE-ecCCceecCcEEEcCCCccEEEec
Confidence            5677666667777888876    34677776 55778888888887773 35553 67788888888876544 444432


Q ss_pred             CCCCCCCcceeEEEecceecCCCCCCCcccc-C--eeEEEcceEEcCccceeeecCCce-EEEEceeE
Q 017111          226 DPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-A--KVHLYNNYTRNWGIYAVCASVDSQ-IYSQCNIY  289 (377)
Q Consensus       226 ~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~ai~~~~~a~-v~~e~N~F  289 (377)
                             ....+++.+|.|.++....=.+.. .  .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus        98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~  158 (158)
T PF13229_consen   98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF  158 (158)
T ss_dssp             -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred             -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence                   012577788887776643333322 2  466788887776667775555554 77777766

>PLN02197 pectinesterase

Probab=97.71  E-value=0.008  Score=64.60  Aligned_cols=133  Identities=22%  Similarity=0.347  Sum_probs=82.7

Q ss_pred             cccccccCCcccccCCCCCCCCCceEEecCCCCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cC
Q 017111           62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SY  131 (377)
Q Consensus        62 ~~~~~~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn  131 (377)
                      ..++.|.  +.+.|+.+-||.++.+-..-..+.+|.|   ++++||++    ...|+||+--.|++  .+.|.|.   +|
T Consensus       251 ~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~n  326 (588)
T PLN02197        251 ADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIY--NEQVTIPKKKNN  326 (588)
T ss_pred             cchhhhc--cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceE--EEEEEccCCCce
Confidence            3445454  3344445556665543322224555665   78889975    23455555567988  4667774   68


Q ss_pred             cceeecccceEEe-C-------Cc--------EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC
Q 017111          132 KTIDGRGQRVKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD  194 (377)
Q Consensus       132 ~TI~G~G~g~~I~-G-------~g--------l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~  194 (377)
                      +||+|.|.+-+|. +       .|        +.+ .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..
T Consensus       327 i~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ  405 (588)
T PLN02197        327 IFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ  405 (588)
T ss_pred             EEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC
Confidence            9999997654443 1       11        333 489999999999986432 2344544435789999999998766


Q ss_pred             CCceE
Q 017111          195 DGLID  199 (377)
Q Consensus       195 Dglid  199 (377)
                      |-|++
T Consensus       406 DTLy~  410 (588)
T PLN02197        406 DTLYV  410 (588)
T ss_pred             cceEe
Confidence            65543

>PLN02793 Probable polygalacturonase

Probab=97.69  E-value=0.0038  Score=65.00  Aligned_cols=137  Identities=15%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |++.+++||.|++|+++....+   .|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|++|.|...+-+..
T Consensus       180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa  253 (443)
T PLN02793        180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS  253 (443)
T ss_pred             EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence            6777899999999999986532   36665 78999999999953     6899 899 578999999999998888887


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-ccCeeEEEcceEEcCcccee--ee-----cCCceEEEEce
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAV--CA-----SVDSQIYSQCN  287 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai--~~-----~~~a~v~~e~N  287 (377)
                      +.+..       .+|++.++.+.....       +.... ..-.+.+.|+.+.+.. +++  -.     +.-..|.+++-
T Consensus       254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni  325 (443)
T PLN02793        254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI  325 (443)
T ss_pred             ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence            75431       257777766532211       11100 0114678888777643 232  11     11234566666


Q ss_pred             eEecCCcccee
Q 017111          288 IYEAGQKKMAF  298 (377)
Q Consensus       288 ~F~~g~~~~~~  298 (377)
                      ..++...+..+
T Consensus       326 ~m~nv~~pI~I  336 (443)
T PLN02793        326 FMENVSNPIII  336 (443)
T ss_pred             EEecCCceEEE
Confidence            66665555443

>PLN03003 Probable polygalacturonase At3g15720

Probab=97.68  E-value=0.0017  Score=67.66  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=76.9

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |++.+++||.|++|+++....   =.|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus       141 l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa  214 (456)
T PLN03003        141 LKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA  214 (456)
T ss_pred             EEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence            677889999999999998653   246675 78999999999864     5899 999 568999999999998888887


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCC-------CCCCcc-ccCeeEEEcceEEcC
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPRV-RYAKVHLYNNYTRNW  269 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~~-------~R~Pr~-r~G~~hv~NN~~~n~  269 (377)
                      +.+..       .+|++-++.+....       .+.... ..-.+++.|+.+.+.
T Consensus       215 iksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T  262 (456)
T PLN03003        215 INSGT-------SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGT  262 (456)
T ss_pred             eCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence            76542       14666665543211       111100 011467888887764

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.66  E-value=0.0022  Score=60.24  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=41.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      ||.+..+++++|++-.|+...    .||.+. .+.+..|..|.|+....| |.+ .++...+|+.|.|.+...++.+..+
T Consensus        59 GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~s  131 (236)
T PF05048_consen   59 GIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSSS  131 (236)
T ss_pred             EEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEeC
Confidence            344444445555555554321    455554 333345555555555554 333 2344555555555544444444322


Q ss_pred             CCCCCCcceeEEEecceecCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      .        +.++.+|.|.++
T Consensus       132 ~--------~n~I~~N~i~~n  144 (236)
T PF05048_consen  132 S--------NNTITGNTISNN  144 (236)
T ss_pred             C--------CCEEECeEEeCC
Confidence            1        345555555555

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=97.64  E-value=0.0031  Score=64.22  Aligned_cols=183  Identities=17%  Similarity=0.260  Sum_probs=134.4

Q ss_pred             ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeecccceEEeCC---cEEEe---------e
Q 017111           85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRLK---------E  152 (377)
Q Consensus        85 ~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~---gl~i~---------~  152 (377)
                      ++|.+-=.+|     |.+||.+-.  .|..+.+-++.++++|.|.+...|+|+|+.+.|.+.   +|++.         +
T Consensus        47 kt~~~~P~eD-----le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g  119 (386)
T PF01696_consen   47 KTYWMEPGED-----LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG  119 (386)
T ss_pred             EEEEcCCCcC-----HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence            3566666677     999999876  246678888888999999999999999988888543   25442         4


Q ss_pred             eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCC
Q 017111          153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD  232 (377)
Q Consensus       153 a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d  232 (377)
                      -.+|.+.|++|....  ...++-+. ...++.|-.|.|....--.|+..   ....|..|.|..-+|++...+       
T Consensus       120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~-------  186 (386)
T PF01696_consen  120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG-------  186 (386)
T ss_pred             eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence            579999999999754  23566665 67899999999999887778774   478899999998888775322       


Q ss_pred             cceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeecCCceEEEEceeEecCC
Q 017111          233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       233 ~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~  293 (377)
                       ..++++.+|.|+.+.-=-  +..|...+.+|...+-.= .+-...  ...+.+|.|....
T Consensus       187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~C-f~l~~g--~g~i~~N~v~~~~  241 (386)
T PF01696_consen  187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECGC-FVLMKG--TGSIKHNMVCGPN  241 (386)
T ss_pred             -cceEEeeheeeeheEEEE--EecCCeEEecceecccce-EEEEcc--cEEEeccEEeCCC
Confidence             246888999998876532  445888999998887642 222222  3344788887553

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.61  E-value=0.0012  Score=61.96  Aligned_cols=131  Identities=15%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEec
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG  224 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG  224 (377)
                      ..++.+..+.++.|++.+|+..    ..||.+. .++++-|..|.++....| |.+. .+.+.+|++|.|.+...++++.
T Consensus        35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~-~s~~~~I~~N~i~~n~~GI~l~  107 (236)
T PF05048_consen   35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLM-GSSNNTISNNTISNNGYGIYLY  107 (236)
T ss_pred             CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEE-cCCCcEEECCEecCCCceEEEe
Confidence            3456777899999999999976    5789887 788899999999999988 6664 4555599999999887777765


Q ss_pred             CCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccceee-ecCCceEEEEceeEec
Q 017111          225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYEA  291 (377)
Q Consensus       225 ~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~-~~~~a~v~~e~N~F~~  291 (377)
                      .+.        ..++-+|.|. ....-=.+.. ....+.+|.+.+-..+++. ........+.+|.|.+
T Consensus       108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N  167 (236)
T PF05048_consen  108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN  167 (236)
T ss_pred             eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence            442        3678888887 3333333332 4678999999887667877 5555567778999943

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.61  E-value=0.00022  Score=71.04  Aligned_cols=105  Identities=28%  Similarity=0.499  Sum_probs=75.7

Q ss_pred             cEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecC
Q 017111          147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA  225 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~  225 (377)
                      .+.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..+.| .|.++.++.+|+|++|.|.. ..++-||+
T Consensus       117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD-~Iaiks~~~ni~v~n~~~~~-ghGisiGS  193 (326)
T PF00295_consen  117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDD-CIAIKSGSGNILVENCTCSG-GHGISIGS  193 (326)
T ss_dssp             SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSE-SEEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred             EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccC-cccccccccceEEEeEEEec-cccceeee
Confidence            466777999999999998653 2457999997 78999999999987755 59998888899999999973 44577775


Q ss_pred             CCCCCC-CcceeEEEecceecCCCCCCCccc
Q 017111          226 DPSHVA-DRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       226 ~d~~~~-d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                      ...... ..-.+|+|.++.|.++. |.-|++
T Consensus       194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK  223 (326)
T PF00295_consen  194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK  223 (326)
T ss_dssp             ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred             ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence            322110 11248999999887753 555553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN03010 polygalacturonase

Probab=97.54  E-value=0.0036  Score=64.55  Aligned_cols=172  Identities=22%  Similarity=0.268  Sum_probs=108.5

Q ss_pred             EEEEeceEEEecce------------eEec--cCcceeecccceEEeCCc------EEEeeeccEEEeeeEEeCCCCCCC
Q 017111          112 IVFEVSGTIHLRSH------------LSVS--SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDV  171 (377)
Q Consensus       112 IVf~vsG~I~l~~~------------l~V~--sn~TI~G~G~g~~I~G~g------l~i~~a~NVIIRnL~ir~g~~~~~  171 (377)
                      |.|.+.|+|.....            +.+.  .|++|.|.|   +|.|.|      |++.+++||.|++|+++....+  
T Consensus       107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~--  181 (409)
T PLN03010        107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKN--  181 (409)
T ss_pred             EEEEEccEEEccCChhhccCCCCcceEEEecccccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCce--
Confidence            45666787765431            2222  678888853   577755      7788999999999999986532  


Q ss_pred             CceEecCCCceEEEEceeee-----cCCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecC
Q 017111          172 DAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~  246 (377)
                       .|.+. .+++|.|++..+.     ...|| ||+ ..+++|+|++|.|..-+-+.-+.+...     ..+|+.-.|...|
T Consensus       182 -~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gH  252 (409)
T PLN03010        182 -HISIK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGH  252 (409)
T ss_pred             -EEEEe-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcC
Confidence             46675 7899999999885     46899 899 568999999999999888888865421     1344444443221


Q ss_pred             C-----CCCCCc-cccCeeEEEcceEEcCccceee--ecC-----CceEEEEceeEecCCcccee
Q 017111          247 T-----RQRHPR-VRYAKVHLYNNYTRNWGIYAVC--ASV-----DSQIYSQCNIYEAGQKKMAF  298 (377)
Q Consensus       247 ~-----~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~--~~~-----~a~v~~e~N~F~~g~~~~~~  298 (377)
                      -     ..+... -..-.+++.|+.+.+.. +++.  ...     =..|.+|+-.++....+..+
T Consensus       253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I  316 (409)
T PLN03010        253 GISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENITLINTKNPIII  316 (409)
T ss_pred             CEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeEEEecCCccEEE
Confidence            1     001000 00114678888877642 2321  111     12466666666666555444

>PLN02176 putative pectinesterase

Probab=97.38  E-value=0.0025  Score=64.11  Aligned_cols=117  Identities=16%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--CC--------cEEEee
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE  152 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--G~--------gl~i~~  152 (377)
                      +.+|.|   |+++||++    ...+++|+--.|+.  .+.|.|.   +|+||.|.|.+-+|.  +.        .+.+ .
T Consensus        44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~  120 (340)
T PLN02176         44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y  120 (340)
T ss_pred             CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence            445555   78899965    22345555457988  4678884   689999998654443  11        2455 4


Q ss_pred             eccEEEeeeEEeCCCC-------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       153 a~NVIIRnL~ir~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      +++++.+||+|+...+       ...-|+-+.-.++.+-+.+|.|.-..|-|++-   ...--..+|.|.
T Consensus       121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe  187 (340)
T PLN02176        121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS  187 (340)
T ss_pred             CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence            8999999999997532       11234444335788999999998877776653   223444555555

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.35  E-value=0.0019  Score=64.41  Aligned_cols=88  Identities=22%  Similarity=0.461  Sum_probs=68.0

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |++.+++|+.|++|+++....+   .+.+. .+++|+|++.++..     ..|| ||+ ..+.+|+|.+|.|...+-+.-
T Consensus        95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia  168 (326)
T PF00295_consen   95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA  168 (326)
T ss_dssp             EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred             eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence            7888899999999999987543   47775 78999999999863     4789 899 468999999999998777776


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCC
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~~  248 (377)
                      +.+..       .+|++.+++|.+..
T Consensus       169 iks~~-------~ni~v~n~~~~~gh  187 (326)
T PF00295_consen  169 IKSGS-------GNILVENCTCSGGH  187 (326)
T ss_dssp             ESSEE-------CEEEEESEEEESSS
T ss_pred             ccccc-------cceEEEeEEEeccc
Confidence            65432       16888888886543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02155 polygalacturonase

Probab=97.32  E-value=0.0074  Score=62.00  Aligned_cols=137  Identities=12%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee-----cCCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s-----~~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |++.+++||.|++|+++....   =.|.+. .+++|.|++.++.     ...|| ||+ ..+++|+|++|.|..-+-+..
T Consensus       148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa  221 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA  221 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence            677789999999999997643   246665 7899999999995     35798 898 568999999999998887887


Q ss_pred             ecCCCCCCCCcceeEEEecceecC-------CCCCCCc-cccCeeEEEcceEEcCccceeee----c-CC---ceEEEEc
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDG-------TRQRHPR-VRYAKVHLYNNYTRNWGIYAVCA----S-VD---SQIYSQC  286 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~-------~~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~~----~-~~---a~v~~e~  286 (377)
                      ++...       -+|++.++.+..       ...+.+. -..-.+.+.|+.+.+.. +++..    + .+   ..|.+++
T Consensus       222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n  293 (394)
T PLN02155        222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD  293 (394)
T ss_pred             cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence            76542       257776665542       1112221 11125678888887643 34322    1 11   2455566


Q ss_pred             eeEecCCcccee
Q 017111          287 NIYEAGQKKMAF  298 (377)
Q Consensus       287 N~F~~g~~~~~~  298 (377)
                      -.++....+..+
T Consensus       294 i~m~~v~~pI~i  305 (394)
T PLN02155        294 LVMKNVENPIII  305 (394)
T ss_pred             EEEcCccccEEE
Confidence            666665555444

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.30  E-value=0.0098  Score=61.27  Aligned_cols=138  Identities=12%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |.+..++||.|++|+|+....+   .|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus       158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa  231 (404)
T PLN02188        158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS  231 (404)
T ss_pred             EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence            4667899999999999986543   46675 78999999999864     5799 899 568999999999998888888


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCCC-------CCCc-cccCeeEEEcceEEcCccceeee---------cCCceEEEE
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAVCA---------SVDSQIYSQ  285 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~ai~~---------~~~a~v~~e  285 (377)
                      +.+..       -+|++-++.+.....       +... -....+.+.|+.+.+.. +++..         +.-..|.++
T Consensus       232 iksg~-------~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~  303 (404)
T PLN02188        232 IGQGN-------SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE  303 (404)
T ss_pred             EccCC-------ccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence            86432       156666655532111       1000 00124678888887753 33321         111357777


Q ss_pred             ceeEecCCccceee
Q 017111          286 CNIYEAGQKKMAFK  299 (377)
Q Consensus       286 ~N~F~~g~~~~~~~  299 (377)
                      +-.+++...+..+.
T Consensus       304 ni~m~~v~~pI~i~  317 (404)
T PLN02188        304 NIVMNNVTNPIIID  317 (404)
T ss_pred             eEEecCccceEEEE
Confidence            77777766655543

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=97.28  E-value=0.0037  Score=64.80  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=93.4

Q ss_pred             cceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC--C-----------------CCCCceEecCCCceEEEEceeeec
Q 017111          132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK--G-----------------PDVDAIQIKPKSKHIWIDRCSLRD  192 (377)
Q Consensus       132 ~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~--~-----------------~~~DaI~i~~~s~nVwIDHcs~s~  192 (377)
                      +||.|.|....-...+|.++.|+++.|++.+|++..  +                 ....+|.+. .++++.|.+|+++.
T Consensus       122 LtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V~~N~I~g  200 (455)
T TIGR03808       122 LTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIVARNTIIG  200 (455)
T ss_pred             eEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEEECCEEEc
Confidence            344454543333344678888999999999998752  0                 012345554 56788999999988


Q ss_pred             CCCCceEeeeC-----------------------------------CceEEEeCceecCCCceeEecCCCCCC-------
Q 017111          193 YDDGLIDITRE-----------------------------------STDITVSRCHFSSHDKTMLIGADPSHV-------  230 (377)
Q Consensus       193 ~~Dglidi~~~-----------------------------------s~~vTIS~n~f~~h~k~~LiG~~d~~~-------  230 (377)
                      ..|+.|-+.+.                                   +.+++|+.|.++++.+-.+.+.+.+..       
T Consensus       201 ~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~  280 (455)
T TIGR03808       201 ANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSV  280 (455)
T ss_pred             cCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEe
Confidence            88865555422                                   457888888888877544433322211       


Q ss_pred             CC-c--ceeEEE-ec-ceecCCCCCCCccc-----c---Ce-eEEEcceEEcCc-----------cceeeecCCceEEEE
Q 017111          231 AD-R--CIRVTI-HH-CFFDGTRQRHPRVR-----Y---AK-VHLYNNYTRNWG-----------IYAVCASVDSQIYSQ  285 (377)
Q Consensus       231 ~d-~--~~~VT~-hh-Nlf~~~~~R~Pr~r-----~---G~-~hv~NN~~~n~~-----------~~ai~~~~~a~v~~e  285 (377)
                      .+ |  .++.-| ++ +.+.++....-...     |   |. .-+-.|++.|..           ..+++...++.-.+.
T Consensus       281 ~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ead~~~~  360 (455)
T TIGR03808       281 SDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEADTAVT  360 (455)
T ss_pred             eeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEecceec
Confidence            11 1  122222 22 45555544444432     2   33 356667766531           134555566666666


Q ss_pred             ceeEecCCc
Q 017111          286 CNIYEAGQK  294 (377)
Q Consensus       286 ~N~F~~g~~  294 (377)
                      +|+-|+.|.
T Consensus       361 ~n~~e~ap~  369 (455)
T TIGR03808       361 GNVVENAPS  369 (455)
T ss_pred             cceecCCcc
Confidence            888877764

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.015  Score=58.35  Aligned_cols=94  Identities=18%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             eceEEEecceeEeccCcceeecccceEEeCCc----EEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEce
Q 017111          116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRC  188 (377)
Q Consensus       116 vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~g----l~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHc  188 (377)
                      ++|..  ...+.|+.-+|+.|. .++++.|.+    +++. +.++|||.|++|+...   .-+-+|-+....+.--|.||
T Consensus        39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N  114 (408)
T COG3420          39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN  114 (408)
T ss_pred             Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence            44655  567888888999997 677787654    6775 9999999999996432   22456666556777889999


Q ss_pred             eeecCCCCceEeeeCCceEEEeCceec
Q 017111          189 SLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       189 s~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      ++..+..| |-+ .++.++-|--|.+.
T Consensus       115 ~l~~n~~G-i~l-~~s~d~~i~~n~i~  139 (408)
T COG3420         115 DLIGNSFG-IYL-HGSADVRIEGNTIQ  139 (408)
T ss_pred             cccccceE-EEE-eccCceEEEeeEEe
Confidence            98888888 445 46777777777765

>PLN02432 putative pectinesterase

Probab=97.24  E-value=0.018  Score=57.04  Aligned_cols=112  Identities=15%  Similarity=0.272  Sum_probs=73.3

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEe----C------CcEEEeeeccEEEee
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----G------KGLRLKECEHVIICN  160 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~----G------~gl~i~~a~NVIIRn  160 (377)
                      -|+++||+.    ...+++|+--.|+.  .+.|.|   .+|+||.|.+..-++.    +      ..+.+ .++|++++|
T Consensus        24 ~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n  100 (293)
T PLN02432         24 RKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF  100 (293)
T ss_pred             cCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence            468888865    22244444456887  566777   3789999997554443    1      11444 489999999


Q ss_pred             eEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          161 LEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       161 L~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      |+|+...+...-|+.+.-.++++.+.+|.|.-..|-|++-   ...--+.+|.|.
T Consensus       101 lt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~  152 (293)
T PLN02432        101 LTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE  152 (293)
T ss_pred             eEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence            9999865433345554435788999999998877776642   223444555555

>PLN02773 pectinesterase

Probab=97.23  E-value=0.024  Score=56.64  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=64.0

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEeC------------------C------
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLTG------------------K------  146 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~G------------------~------  146 (377)
                      -|+++||+.    ...+++||--.|+.  .+.|.|.   +|+||+|++..-+|.-                  .      
T Consensus        18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y--~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa   95 (317)
T PLN02773         18 CTVQDAIDAVPLCNRCRTVIRVAPGVY--RQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG   95 (317)
T ss_pred             cCHHHHHhhchhcCCceEEEEEeCceE--EEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence            468888865    22345555456887  4677773   5799999875433321                  0      


Q ss_pred             cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111          147 GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                      .+.+ .++|++.+||+|+...+. ..-|+.+.-.++.+-+.+|.|.-..|=|++
T Consensus        96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~  148 (317)
T PLN02773         96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYL  148 (317)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEe
Confidence            1334 489999999999976431 233444433578899999999766665553

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=97.22  E-value=0.026  Score=59.98  Aligned_cols=103  Identities=23%  Similarity=0.419  Sum_probs=68.2

Q ss_pred             CCCCCh---hHHHhhhc-----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc--------
Q 017111           93 ADDGPG---SLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------  147 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~-----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g--------  147 (377)
                      +.+|.|   ++++||+.     ...|++|+--.|++  .+.|.|.   +|+||+|.|.+-+|. +     .+        
T Consensus       230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT  307 (529)
T PLN02170        230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT  307 (529)
T ss_pred             cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence            445554   68889963     12356666567988  4667773   699999998655543 2     11        


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli  198 (377)
                      +.+ .+++++.|||+|+...+. ..-|+.++-.++.+.+.+|.|.-..|-|.
T Consensus       308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy  358 (529)
T PLN02170        308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLY  358 (529)
T ss_pred             EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence            333 489999999999986432 23344444357889999999976555544

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=97.21  E-value=0.021  Score=60.92  Aligned_cols=120  Identities=22%  Similarity=0.478  Sum_probs=76.9

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------E
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------L  148 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l  148 (377)
                      +.+|.|   ++++||++    ...|+||+--.|++  .+.|.|.   +|+||+|.|.+-+| .+.     +        +
T Consensus       235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~  312 (541)
T PLN02416        235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL  312 (541)
T ss_pred             CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence            334655   67888865    33466666667988  4667773   68999999865444 331     1        4


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEe
Q 017111          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVS  210 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS  210 (377)
                      .+ .+++++.|||+|+...+. ..-|+-++-.++.+-+-+|.|.-..|-|                 +|+.-+....-++
T Consensus       313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  391 (541)
T PLN02416        313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ  391 (541)
T ss_pred             EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence            44 489999999999976432 2234433334788999999997654444                 4443344455666


Q ss_pred             Cceec
Q 017111          211 RCHFS  215 (377)
Q Consensus       211 ~n~f~  215 (377)
                      +|.|.
T Consensus       392 ~c~i~  396 (541)
T PLN02416        392 ACNIV  396 (541)
T ss_pred             ccEEE
Confidence            66664

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=97.12  E-value=0.026  Score=61.47  Aligned_cols=197  Identities=19%  Similarity=0.370  Sum_probs=112.5

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------E
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l  148 (377)
                      +.+|.|   ++++||+.    ...|+||+--.|++  .+.|.|.   .|+||+|.|.+-+|. +.     |        +
T Consensus       255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~  332 (670)
T PLN02217        255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV  332 (670)
T ss_pred             CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence            445655   68889875    22355555557887  5677775   478999998655543 21     1        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeeeCCceEEEe
Q 017111          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS  210 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------glidi~~~s~~vTIS  210 (377)
                      .+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|                 |.+|+.-+....-++
T Consensus       333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  411 (670)
T PLN02217        333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ  411 (670)
T ss_pred             EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence            34 489999999999976532 23455554357889999999975443                 445554555567778


Q ss_pred             CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCCCCC------------CccccCeeEEEcceEEc-----
Q 017111          211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH------------PRVRYAKVHLYNNYTRN-----  268 (377)
Q Consensus       211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~------------Pr~r~G~~hv~NN~~~n-----  268 (377)
                      +|.|.-..     ++.+--.+... .+...-+.|++|.+.....-.            |.-.+.++-+.|.++.+     
T Consensus       412 ~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~  490 (670)
T PLN02217        412 NCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPE  490 (670)
T ss_pred             ccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcCc
Confidence            88876321     22222111000 011235788999886643211            11123456777776643     


Q ss_pred             -CccceeeecCCceEEEEceeEecCC
Q 017111          269 -WGIYAVCASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       269 -~~~~ai~~~~~a~v~~e~N~F~~g~  293 (377)
                       |..+.-......-.+.|.+-+.+|.
T Consensus       491 GW~~W~~~~~~~t~~yaEY~n~GpGa  516 (670)
T PLN02217        491 GWQPWLGDFGLNTLFYSEVQNTGPGA  516 (670)
T ss_pred             ccCccCCCCCCCceEEEEeccccCCC
Confidence             3222111222334566766666664

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=97.08  E-value=0.041  Score=58.51  Aligned_cols=103  Identities=22%  Similarity=0.402  Sum_probs=67.5

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--------CC------cE
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GL  148 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--------G~------gl  148 (377)
                      +.+|.|   ++++||++    ...|++|+--.|+++  +.|.|.   +|+||+|.|.+-++.        |.      .+
T Consensus       223 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~  300 (530)
T PLN02933        223 AIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATV  300 (530)
T ss_pred             CCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEE
Confidence            444555   68889865    223555555579884  667774   688999997554443        11      13


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli  198 (377)
                      .+ .+++++.|||+|+...+. ..-|+-++-.++.+-+.+|.|.-..|-|+
T Consensus       301 ~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy  350 (530)
T PLN02933        301 GV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLY  350 (530)
T ss_pred             EE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence            44 489999999999976432 23445444357889999999976655544

>PLN02497 probable pectinesterase

Probab=96.98  E-value=0.062  Score=54.08  Aligned_cols=111  Identities=13%  Similarity=0.221  Sum_probs=71.3

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eC---------CcEEEeeeccEEEeee
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG---------KGLRLKECEHVIICNL  161 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G---------~gl~i~~a~NVIIRnL  161 (377)
                      |+++||++    ...+++|+--.|+.  .+.|.|.   +++||.|+|..-++ ..         ..+.+ .+++++.+||
T Consensus        46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl  122 (331)
T PLN02497         46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI  122 (331)
T ss_pred             CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence            68888865    23344455457888  5667773   68999999753333 21         12444 4899999999


Q ss_pred             EEeCCCCC--------CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          162 EFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       162 ~ir~g~~~--------~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      +|+...+.        ..-|+.+.-.++++-+.+|.|.-..|-|++-   ...--..+|.|.
T Consensus       123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  181 (331)
T PLN02497        123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ  181 (331)
T ss_pred             EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence            99975321        1234444435788999999998887777643   223344555554

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=96.97  E-value=0.05  Score=57.83  Aligned_cols=102  Identities=20%  Similarity=0.431  Sum_probs=66.5

Q ss_pred             CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc--------EE
Q 017111           94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------LR  149 (377)
Q Consensus        94 dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g--------l~  149 (377)
                      .+|.|   ++++||++    ...|++|+--.|++  ++.|.|.   +|+||+|.|.+-+|. +     .|        +.
T Consensus       212 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~  289 (520)
T PLN02201        212 ADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA  289 (520)
T ss_pred             CCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE
Confidence            34544   68888865    22355555557988  4667774   589999997544433 1     11        33


Q ss_pred             EeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCce
Q 017111          150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (377)
Q Consensus       150 i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgli  198 (377)
                      + .+++++.+||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|+
T Consensus       290 v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy  338 (520)
T PLN02201        290 V-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLY  338 (520)
T ss_pred             E-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeE
Confidence            3 489999999999976432 23444444357889999999976555544

>smart00656 Amb_all Amb_all domain

Probab=96.97  E-value=0.016  Score=53.56  Aligned_cols=131  Identities=17%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             cCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC----C-CCCC-ceEecCCCceEEEEceeeecCCCCceEeeeC
Q 017111          130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK----G-PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRE  203 (377)
Q Consensus       130 sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~----~-~~~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~  203 (377)
                      .|++|.+........+.+|.+.+++||.|-+.+|..+.    . ...| .+.+..++.+|-|-.|.|....-++|--..+
T Consensus        45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d  124 (190)
T smart00656       45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD  124 (190)
T ss_pred             eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence            47777775332222356788888999999999999762    1 1133 4455546788888888887654444433222


Q ss_pred             Cc------eEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcC
Q 017111          204 ST------DITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW  269 (377)
Q Consensus       204 s~------~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~  269 (377)
                      .+      .||+.+|+|.+.. +.-++.         .-.+=+.+|+|.+.....--.+. +++.+.||||++.
T Consensus       125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r---------~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      125 SDTDDGKMRVTIAHNYFGNLRQRAPRVR---------FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             CccccccceEEEECcEEcCcccCCCccc---------CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence            22      6999999998531 111111         11567788999887644333332 5789999999864

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=96.97  E-value=0.051  Score=58.11  Aligned_cols=120  Identities=18%  Similarity=0.440  Sum_probs=77.7

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------Cc------E
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------L  148 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~g------l  148 (377)
                      +.+|.|   ++++||++    ...|.||+--.|++  ++.|.|.   +|+||+|.|.+.+|. +       .+      +
T Consensus       241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~  318 (548)
T PLN02301        241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV  318 (548)
T ss_pred             CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence            334655   68888865    23356666567998  4677774   689999998655443 2       11      2


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEe
Q 017111          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS  210 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS  210 (377)
                      .+ .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|-                 .+|+.-+....-++
T Consensus       319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  397 (548)
T PLN02301        319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ  397 (548)
T ss_pred             EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence            33 479999999999976432 224444443578899999999765544                 44444444456666


Q ss_pred             Cceec
Q 017111          211 RCHFS  215 (377)
Q Consensus       211 ~n~f~  215 (377)
                      +|.|.
T Consensus       398 ~c~i~  402 (548)
T PLN02301        398 NCKIV  402 (548)
T ss_pred             ccEEE
Confidence            77664

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=96.90  E-value=0.061  Score=56.87  Aligned_cols=153  Identities=17%  Similarity=0.362  Sum_probs=91.3

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------E
Q 017111           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l  148 (377)
                      +.+|.|   |+++||++    +..|++|+--.|++  .+.|.|.   +|+||+|.|.+-+|. +.     +        +
T Consensus       202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv  279 (509)
T PLN02488        202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV  279 (509)
T ss_pred             CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence            334554   68889865    22355555557888  4667774   689999998655543 21     1        2


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEe
Q 017111          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS  210 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS  210 (377)
                      .+ .++++|.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-                 .+|+.-+...+-++
T Consensus       280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq  358 (509)
T PLN02488        280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ  358 (509)
T ss_pred             EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence            33 478999999999976432 235555554578899999999765444                 44444444456677


Q ss_pred             CceecCC-----CceeEecCCCCCCCCcceeEEEecceecCCCC
Q 017111          211 RCHFSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDGTRQ  249 (377)
Q Consensus       211 ~n~f~~h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~  249 (377)
                      +|.|...     .++.+--.+-.. .+...-+.||+|.+.....
T Consensus       359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~~  401 (509)
T PLN02488        359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASSD  401 (509)
T ss_pred             ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCCc
Confidence            7877532     122222111100 0111347788887765443

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=96.86  E-value=0.067  Score=57.77  Aligned_cols=119  Identities=21%  Similarity=0.401  Sum_probs=75.8

Q ss_pred             CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------EE
Q 017111           94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LR  149 (377)
Q Consensus        94 dsg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l~  149 (377)
                      .+|.|   ++++||++    ...|++|+--.|++  .+.|.|.   +|+||+|.|.+-+|. +.     +        |.
T Consensus       291 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~  368 (596)
T PLN02745        291 KDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV  368 (596)
T ss_pred             CCCCCCcccHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE
Confidence            34544   78889875    22355555456988  4667774   589999998654443 21     1        33


Q ss_pred             EeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEeC
Q 017111          150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVSR  211 (377)
Q Consensus       150 i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS~  211 (377)
                      + .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|-|                 +|+.-+....-+++
T Consensus       369 v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~~  447 (596)
T PLN02745        369 A-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQN  447 (596)
T ss_pred             E-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEEe
Confidence            3 489999999999976432 2234444335788999999997655544                 44444444555666


Q ss_pred             ceec
Q 017111          212 CHFS  215 (377)
Q Consensus       212 n~f~  215 (377)
                      |.|.
T Consensus       448 C~i~  451 (596)
T PLN02745        448 CLIF  451 (596)
T ss_pred             cEEE
Confidence            6664

>PLN02665 pectinesterase family protein

Probab=96.84  E-value=0.076  Score=54.12  Aligned_cols=112  Identities=13%  Similarity=0.219  Sum_probs=71.2

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceE-EeCC------------cEEEeeeccEE
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK------------GLRLKECEHVI  157 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~-I~G~------------gl~i~~a~NVI  157 (377)
                      -|+++||++    ...|+||+--.|+.  .+.|.|.   +++||.|.+...+ |...            .+.+ .+++++
T Consensus        81 ~TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~  157 (366)
T PLN02665         81 KTITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFM  157 (366)
T ss_pred             cCHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeE
Confidence            378899975    22355555556988  4677774   6889999865333 3211            1344 489999


Q ss_pred             EeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          158 ICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       158 IRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      .+||+|+...+      ...-|+.++-.++.+-+.+|.|.-..|=|++-.   ..--..+|.|.
T Consensus       158 a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIe  218 (366)
T PLN02665        158 AANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIE  218 (366)
T ss_pred             EEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC---CCEEEEeeEEe
Confidence            99999997532      112344443347889999999988777776532   22334455554

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=96.81  E-value=0.078  Score=56.65  Aligned_cols=144  Identities=14%  Similarity=0.341  Sum_probs=87.0

Q ss_pred             hHHHhhhcC---C----CeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C------cEEEeeec
Q 017111           99 SLREGCRMK---E----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKECE  154 (377)
Q Consensus        99 SLr~Ai~~~---~----Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~------gl~i~~a~  154 (377)
                      ++++||++-   .    -|+||+--.|++  .+.|.|.   .|+||+|.|.+-+|. +       .      .+.+ .++
T Consensus       237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~  313 (538)
T PLN03043        237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE  313 (538)
T ss_pred             CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence            688888641   1    155666567988  4677773   689999998654443 2       1      1344 479


Q ss_pred             cEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeeeCCceEEEeCceecC
Q 017111          155 HVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       155 NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------lidi~~~s~~vTIS~n~f~~  216 (377)
                      ++|.|||+|+...+. ..-|+-++-.++...+.+|+|.-..|-                 .+|+.-+.-.+-+++|.|.-
T Consensus       314 ~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~~  393 (538)
T PLN03043        314 RFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYA  393 (538)
T ss_pred             CEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEEE
Confidence            999999999976432 234555544578899999999765444                 44444445556778887753


Q ss_pred             C-----CceeEecCCCCCCCCcceeEEEecceecC
Q 017111          217 H-----DKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       217 h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~  246 (377)
                      .     .++++--.+... .+...-+.||+|.+..
T Consensus       394 r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~  427 (538)
T PLN03043        394 RKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEA  427 (538)
T ss_pred             ecCCCCCCceEEecCCCC-CCCCceEEEEecEEec
Confidence            2     122222111100 0112357788887754

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=96.78  E-value=0.025  Score=55.98  Aligned_cols=111  Identities=16%  Similarity=0.333  Sum_probs=65.6

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceE-EeCC-------------cEEEeeeccE
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHV  156 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~-I~G~-------------gl~i~~a~NV  156 (377)
                      -++++||+.    ...+++|+--.|+.+  +.|.|.   +++||+|.|..-+ |.+.             .|.+. ++++
T Consensus        13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f   89 (298)
T PF01095_consen   13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF   89 (298)
T ss_dssp             SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred             cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence            358888875    223555665679884  667775   5899999975433 3331             14554 8999


Q ss_pred             EEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC
Q 017111          157 IICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       157 IIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~  216 (377)
                      +++||+|+...+   ...-||.+.  ++++.+.+|.|.-..|-|+.-   ....-+.+|.|..
T Consensus        90 ~~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG  147 (298)
T PF01095_consen   90 TAENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG  147 (298)
T ss_dssp             EEEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred             eeeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence            999999997432   123566664  678999999999888876643   3355667777763

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=96.77  E-value=0.075  Score=57.08  Aligned_cols=120  Identities=17%  Similarity=0.423  Sum_probs=76.7

Q ss_pred             CCCCCh---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C-----
Q 017111           93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K-----  146 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~-----  146 (377)
                      +.+|.|   ++++||++-       ..|+||+--.|++  .+.|.|.   +|+||+|.|.+-+|. +       .     
T Consensus       255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S  332 (566)
T PLN02713        255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS  332 (566)
T ss_pred             CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence            445555   678888652       1245555456988  4667773   688999998544433 2       1     


Q ss_pred             -cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceE
Q 017111          147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDI  207 (377)
Q Consensus       147 -gl~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~v  207 (377)
                       .+.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|                 +|+.-+.-.+
T Consensus       333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a  411 (566)
T PLN02713        333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV  411 (566)
T ss_pred             eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence             1344 479999999999986432 2345544445788999999997654444                 4444444556


Q ss_pred             EEeCceec
Q 017111          208 TVSRCHFS  215 (377)
Q Consensus       208 TIS~n~f~  215 (377)
                      -+++|.|.
T Consensus       412 vfq~C~i~  419 (566)
T PLN02713        412 VFQNCNLY  419 (566)
T ss_pred             EEeccEEE
Confidence            67777775

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=96.76  E-value=0.012  Score=62.79  Aligned_cols=103  Identities=18%  Similarity=0.337  Sum_probs=68.5

Q ss_pred             CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C------Cc-------
Q 017111           93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG-------  147 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~~-----~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G------~g-------  147 (377)
                      +.+|.|   ++++||++-     ..|.||+--.|+++  +.|.|.   .|+||+|.|.+-+|. +      .|       
T Consensus       246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa  323 (553)
T PLN02708        246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA  323 (553)
T ss_pred             CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence            334544   678888641     23556665679884  667763   689999998655443 1      12       


Q ss_pred             -EEEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCCCce
Q 017111          148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (377)
Q Consensus       148 -l~i~~a~NVIIRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~Dgli  198 (377)
                       +.+ .+++++.|||+|+...+.+ .-|+-++-.++.+.+.+|.|.-..|-|+
T Consensus       324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy  375 (553)
T PLN02708        324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLY  375 (553)
T ss_pred             EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence             334 4899999999999865422 3455554458899999999976555443

>PLN02304 probable pectinesterase

Probab=96.76  E-value=0.021  Score=58.37  Aligned_cols=111  Identities=14%  Similarity=0.185  Sum_probs=74.7

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEeC--------------CcEEEeeeccEE
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLTG--------------KGLRLKECEHVI  157 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~G--------------~gl~i~~a~NVI  157 (377)
                      |+++||++    +..+++|+--.|+.  .+.|.|   .+|+||+|+|.+-++.-              ..+.+ .+++++
T Consensus        89 TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~  165 (379)
T PLN02304         89 TVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI  165 (379)
T ss_pred             CHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence            78899975    22355555567887  467777   37899999975544321              11333 389999


Q ss_pred             EeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          158 ICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       158 IRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      .+||+|+....      ...-|+.+.-.++.+-+.+|.|.-..|-|++-   ...--+.+|.|.
T Consensus       166 a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe  226 (379)
T PLN02304        166 AKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ  226 (379)
T ss_pred             EEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence            99999997532      11234444435788999999999998888753   234446677776

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=96.74  E-value=0.1  Score=56.34  Aligned_cols=148  Identities=18%  Similarity=0.390  Sum_probs=89.4

Q ss_pred             CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-------------cEEE
Q 017111           95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GLRL  150 (377)
Q Consensus        95 sg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-------------gl~i  150 (377)
                      +|.|   ++++||+.    ...|.||+--.|++  .+.+.|.   .|++|+|.|.+-+|. +.             .+.+
T Consensus       282 dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v  359 (587)
T PLN02313        282 DGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA  359 (587)
T ss_pred             CCCCCCccHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE
Confidence            4544   67888865    22355565567887  4667774   589999998654443 21             1233


Q ss_pred             eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeeeCCceEEEeCc
Q 017111          151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRC  212 (377)
Q Consensus       151 ~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dglidi~~~s~~vTIS~n  212 (377)
                       .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..                 .|.+|+.-+...+-+++|
T Consensus       360 -~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c  438 (587)
T PLN02313        360 -VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDC  438 (587)
T ss_pred             -ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEcc
Confidence             478999999999986432 2234444335788999999997543                 445555555566778888


Q ss_pred             eecCC-----CceeEecCCCCCCCCcceeEEEecceecC
Q 017111          213 HFSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       213 ~f~~h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~  246 (377)
                      .|.-.     .++++--.+... .+...-+.||+|.+..
T Consensus       439 ~i~~r~~~~~~~~~iTAqgr~~-~~~~tG~v~~~c~i~~  476 (587)
T PLN02313        439 DINARRPNSGQKNMVTAQGRSD-PNQNTGIVIQNCRIGG  476 (587)
T ss_pred             EEEEecCCCCCcceEEecCCCC-CCCCceEEEEecEEec
Confidence            88632     122222111100 0112357888887754

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=96.68  E-value=0.023  Score=60.55  Aligned_cols=117  Identities=21%  Similarity=0.417  Sum_probs=76.3

Q ss_pred             CCCCCh---hHHHhhhcC------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-----Cc-------
Q 017111           93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG-------  147 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~~------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-----~g-------  147 (377)
                      +.+|.|   ++++||++-      ..|++|+--.|++  .+.|.|.   +|+||+|.|.+-+|. +     .+       
T Consensus       228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa  305 (539)
T PLN02995        228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA  305 (539)
T ss_pred             CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence            445665   788999752      2255555456988  4567774   699999998654443 2     11       


Q ss_pred             -EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       148 -l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                       +.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|.+-.   ..--..+|.|.
T Consensus       306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~---~Rqyy~~C~I~  371 (539)
T PLN02995        306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS---QRQFYRECYIY  371 (539)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC---CceEEEeeEEe
Confidence             334 489999999999976432 23455554457899999999988877766432   23344555554

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=96.68  E-value=0.07  Score=56.95  Aligned_cols=115  Identities=20%  Similarity=0.417  Sum_probs=73.8

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------EEEeeeccE
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHV  156 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l~i~~a~NV  156 (377)
                      -++++||++    +..|+|||--.|++  .+.|.|.   +|+||+|.|.+-++ .+.     +        +.+ .++++
T Consensus       245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F  321 (537)
T PLN02506        245 RTITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF  321 (537)
T ss_pred             cCHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence            357888865    23456666567988  4567774   68999999754444 321     1        233 48999


Q ss_pred             EEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCc-----------------eEeeeCCceEEEeCceec
Q 017111          157 IICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGL-----------------IDITRESTDITVSRCHFS  215 (377)
Q Consensus       157 IIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-----------------idi~~~s~~vTIS~n~f~  215 (377)
                      +.|||+|+...+. ..-|+-++-.++++-+.+|.|.-..|-|                 +|+.-+....-+++|.|.
T Consensus       322 ~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~  398 (537)
T PLN02506        322 IARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIY  398 (537)
T ss_pred             EEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEE
Confidence            9999999976432 2334444335789999999997655544                 444444444566666665

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=96.64  E-value=0.031  Score=59.56  Aligned_cols=101  Identities=22%  Similarity=0.465  Sum_probs=70.4

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeC-----------CceEEEeCceec
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHFS  215 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~-----------s~~vTIS~n~f~  215 (377)
                      ++.+..++|+.++||+|..-.....|||.+. .++||.|+.|.|+-+.| +|-++.+           +.+|+|++|+|.
T Consensus       263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~~~~~~~~~i~i~~c~~~  340 (542)
T COG5434         263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDD-CIAIKSGAGLDGKKGYGPSRNIVIRNCYFS  340 (542)
T ss_pred             EEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCc-eEEeecccCCcccccccccccEEEecceec
Confidence            4566689999999999987554467999996 89999999999987443 3655532           467999999998


Q ss_pred             CCCceeEecCCCCCCCCcc-eeEEEecceecCCCCCCCcc
Q 017111          216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       216 ~h~k~~LiG~~d~~~~d~~-~~VT~hhNlf~~~~~R~Pr~  254 (377)
                      .-.-+..+|+.-    +++ ..|++-.|-|.+ ..|-=|+
T Consensus       341 ~ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi  375 (542)
T COG5434         341 SGHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI  375 (542)
T ss_pred             ccccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence            433333444321    122 367777777776 4554555

>PLN02682 pectinesterase family protein

Probab=96.64  E-value=0.027  Score=57.35  Aligned_cols=112  Identities=15%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeecccceEEe------------CC--------cEEE
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRL  150 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~g~~I~------------G~--------gl~i  150 (377)
                      -|+++||++    +..+++|+--.|+.  .+.|.|   .+|+||.|.|..-++.            |.        .+.+
T Consensus        83 ~TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v  160 (369)
T PLN02682         83 TTIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV  160 (369)
T ss_pred             cCHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE
Confidence            368889875    22344444456888  466777   4789999997544332            10        1344


Q ss_pred             eeeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          151 KECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       151 ~~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                       .+++++.+||+|+....      ...-|+.+.-.++++.+.+|.|.-..|=|++-   ...--+.+|.|.
T Consensus       161 -~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  227 (369)
T PLN02682        161 -NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE  227 (369)
T ss_pred             -ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence             48899999999997532      11224444335789999999999888887653   234455666665

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=96.61  E-value=0.023  Score=60.99  Aligned_cols=104  Identities=21%  Similarity=0.408  Sum_probs=68.4

Q ss_pred             CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C------C--c------
Q 017111           93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------K--G------  147 (377)
Q Consensus        93 ~dsg~G---SLr~Ai~~~----~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G------~--g------  147 (377)
                      +.+|.|   ++++||++-    ..|+||+--.|++  .+.|.|.   +|+||+|.|.+-+|. +      +  +      
T Consensus       264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT  341 (572)
T PLN02990        264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT  341 (572)
T ss_pred             CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence            344555   788898752    2355555557888  4667774   689999998544433 1      1  1      


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                      +.+ .+++++.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|++
T Consensus       342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~  393 (572)
T PLN02990        342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYV  393 (572)
T ss_pred             EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence            233 489999999999976432 234554443578899999999876665543

>PLN02314 pectinesterase

Probab=96.53  E-value=0.019  Score=61.85  Aligned_cols=98  Identities=17%  Similarity=0.328  Sum_probs=66.5

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-----c--------EEEeeeccEE
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHVI  157 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-----g--------l~i~~a~NVI  157 (377)
                      ++++||+.    ...|+||+--.|++  .+.|.|.   .|+||+|.|.+-+| .+.     |        |.+ .+++++
T Consensus       292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~  368 (586)
T PLN02314        292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI  368 (586)
T ss_pred             CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence            68889865    23456666567988  4667774   58999999854444 321     1        333 489999


Q ss_pred             EeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCCCceE
Q 017111          158 ICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       158 IRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                      .|||+|+...+.. .-|+-++-.++...+.+|.|.-..|-|.+
T Consensus       369 a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~  411 (586)
T PLN02314        369 AKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA  411 (586)
T ss_pred             EEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence            9999999764322 34555544578899999999876666543

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=96.38  E-value=0.029  Score=60.19  Aligned_cols=102  Identities=19%  Similarity=0.347  Sum_probs=67.1

Q ss_pred             CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe--------CC------cEEE
Q 017111           95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRL  150 (377)
Q Consensus        95 sg~G---SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~--------G~------gl~i  150 (377)
                      +|.|   +.++||+.    ...|.||+--.|++  .+.|.|.   .|+||+|.|.+-+|.        |.      .+.+
T Consensus       265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v  342 (565)
T PLN02468        265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV  342 (565)
T ss_pred             CCCCCccCHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence            4555   67788865    23355565567988  4667774   588999998644443        11      1333


Q ss_pred             eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111          151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       151 ~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                       .+++++.|||+|+...+. ..-|+-++-.++.+.+.+|.|.-..|-|+.
T Consensus       343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~  391 (565)
T PLN02468        343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYA  391 (565)
T ss_pred             -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence             378999999999976432 224444443578899999999876666543

>PLN02634 probable pectinesterase

Probab=96.26  E-value=0.072  Score=54.12  Aligned_cols=111  Identities=16%  Similarity=0.244  Sum_probs=71.4

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe------------C--------CcEEEe
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT------------G--------KGLRLK  151 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~------------G--------~gl~i~  151 (377)
                      |+++||++    ...+++|+--.|+.  .+.|.|.   +|+||.|.|...+|.            |        ..+.+ 
T Consensus        70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V-  146 (359)
T PLN02634         70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV-  146 (359)
T ss_pred             CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence            47888865    22344444456887  4667773   689999998655553            1        01334 


Q ss_pred             eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      .+++++.+||+|+....      ...-|+.+.-.++++-+.+|.|.-..|-|++-   ...--..+|.|.
T Consensus       147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIe  213 (359)
T PLN02634        147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIE  213 (359)
T ss_pred             ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEc
Confidence            47899999999997632      11234444334788999999999888877643   234445566665

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=96.17  E-value=0.046  Score=58.93  Aligned_cols=100  Identities=20%  Similarity=0.343  Sum_probs=66.0

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-CC-----c--------EEEeeeccE
Q 017111           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------LRLKECEHV  156 (377)
Q Consensus        98 GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G~-----g--------l~i~~a~NV  156 (377)
                      -++++||++    ...|+||+--.|+++-+ .|.|.   +|+||+|.|.+-+|. +.     +        +.+ .++++
T Consensus       285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F  362 (587)
T PLN02484        285 KTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF  362 (587)
T ss_pred             ccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence            357789865    23356666567988431 47774   689999998654443 31     1        233 48999


Q ss_pred             EEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017111          157 IICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       157 IIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglid  199 (377)
                      +.|||+|+...+. ..-|+-++-.++...+.+|.|.-..|-|++
T Consensus       363 ~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~  406 (587)
T PLN02484        363 IARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYV  406 (587)
T ss_pred             EEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence            9999999976432 224444443578899999999876666554

>PLN02916 pectinesterase family protein

Probab=96.07  E-value=0.061  Score=56.86  Aligned_cols=100  Identities=16%  Similarity=0.296  Sum_probs=66.6

Q ss_pred             hhHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeecccceEEe-C-------C------cEEEeee
Q 017111           98 GSLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKEC  153 (377)
Q Consensus        98 GSLr~Ai~~~-------~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I~-G-------~------gl~i~~a  153 (377)
                      -++++||++-       ..|++|+--.|++  .+.+.|.   +|+||+|.|.+-+|. +       .      .+.+ .+
T Consensus       200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~  276 (502)
T PLN02916        200 RTINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG  276 (502)
T ss_pred             cCHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence            3688888642       2356665567988  4667774   589999997554443 2       1      1333 48


Q ss_pred             ccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceEe
Q 017111          154 EHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI  200 (377)
Q Consensus       154 ~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi  200 (377)
                      ++++.|||+|+...+. ..-|+-++-.++..-+.+|.|.-..|-|++-
T Consensus       277 ~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~  324 (502)
T PLN02916        277 DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH  324 (502)
T ss_pred             CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeC
Confidence            8999999999976432 2234444335788999999998777766543

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=95.83  E-value=0.03  Score=51.00  Aligned_cols=102  Identities=24%  Similarity=0.389  Sum_probs=56.8

Q ss_pred             CcceeecccceEEe--CCcEEEeeeccEEEeeeEEeCCCCCCCCceEe-------------------cCCCceEEEEcee
Q 017111          131 YKTIDGRGQRVKLT--GKGLRLKECEHVIICNLEFEGGKGPDVDAIQI-------------------KPKSKHIWIDRCS  189 (377)
Q Consensus       131 n~TI~G~G~g~~I~--G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i-------------------~~~s~nVwIDHcs  189 (377)
                      |++|.|.+..  ..  ..++.+..+.|+.|+|++++...   .++|.+                   +.++.+++++.|.
T Consensus        98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
T PF12708_consen   98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI  172 (225)
T ss_dssp             EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred             eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence            5777776322  22  34677777899999999999752   223322                   2111223334444


Q ss_pred             eecCCCCceEeeeCCceEEEeCceecC-CCceeEecCCCCCCCCcceeEEEecceecCCC
Q 017111          190 LRDYDDGLIDITRESTDITVSRCHFSS-HDKTMLIGADPSHVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       190 ~s~~~Dglidi~~~s~~vTIS~n~f~~-h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~  248 (377)
                      +..+.++ +.  .+.+++++++|.|.. ...+..+-...        .+++.+|.|.+|.
T Consensus       173 ~~~~~~g-~~--~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~  221 (225)
T PF12708_consen  173 FNGGDNG-II--LGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD  221 (225)
T ss_dssp             EESSSCS-EE--CEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred             ccCCCce-eE--eecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence            5555666 32  233678888888775 44454443221        3666666766654

...

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=95.68  E-value=0.27  Score=51.02  Aligned_cols=111  Identities=17%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             ceEEecCCCCCC---ChhHHHhhhcC-----CCeEEEEEeceEEEecceeEe---ccCcceeeccc---ceEEeCC----
Q 017111           85 PLYHVTTLADDG---PGSLREGCRMK-----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK----  146 (377)
Q Consensus        85 ~vv~VT~l~dsg---~GSLr~Ai~~~-----~Pr~IVf~vsG~I~l~~~l~V---~sn~TI~G~G~---g~~I~G~----  146 (377)
                      ..+.|-- +.+|   --|+++||++.     ..+++|+--.|+.  .+.|.|   .+++||.|.|.   +..|...    
T Consensus        80 ~~~vV~~-a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~  156 (422)
T PRK10531         80 PDFVVGP-AGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGE  156 (422)
T ss_pred             CcEEEec-CCCCCCCccCHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCccc
Confidence            4555642 2223   34788899741     2345555456888  466777   37899999763   3344321    


Q ss_pred             -------------------------------------c------EEEeeeccEEEeeeEEeCCCCC-----CCCceEecC
Q 017111          147 -------------------------------------G------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKP  178 (377)
Q Consensus       147 -------------------------------------g------l~i~~a~NVIIRnL~ir~g~~~-----~~DaI~i~~  178 (377)
                                                           +      +.+ .+++++.+||+|+...+.     ..-|+-+.-
T Consensus       157 ~~~~~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv  235 (422)
T PRK10531        157 MSPADWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT  235 (422)
T ss_pred             cccccccccccccccccccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE
Confidence                                                 0      223 479999999999976431     123444433


Q ss_pred             CCceEEEEceeeecCCCCceE
Q 017111          179 KSKHIWIDRCSLRDYDDGLID  199 (377)
Q Consensus       179 ~s~nVwIDHcs~s~~~Dglid  199 (377)
                      .++.+.+.+|.|.-..|=|+.
T Consensus       236 ~GDra~fy~C~flG~QDTLy~  256 (422)
T PRK10531        236 DGDKVQIENVNILGRQDTFFV  256 (422)
T ss_pred             cCCcEEEEeeEEecccceeee
Confidence            578899999999988888775

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=95.68  E-value=0.059  Score=50.23  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             Ccceeec---------ccceEEeCCcEEEeeeccEEEeeeEEeCCCC----C-CCCceEecCCCceEEEEceeeecCCCC
Q 017111          131 YKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----P-DVDAIQIKPKSKHIWIDRCSLRDYDDG  196 (377)
Q Consensus       131 n~TI~G~---------G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~----~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg  196 (377)
                      |++|-+.         +....-.+..|.|.+++||+|-|.+|..+..    . .+..|.+..++++|-|-+|-|......
T Consensus        52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~  131 (200)
T PF00544_consen   52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT  131 (200)
T ss_dssp             S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred             CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence            6777762         2233334567999999999999999998721    1 233456655789999999999764332


Q ss_pred             ceEe------eeCCceEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceE
Q 017111          197 LIDI------TRESTDITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT  266 (377)
Q Consensus       197 lidi------~~~s~~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~  266 (377)
                      ++.-      ......||+-.|+|.+.. +.=++.         .-.+-+.+|+|.+.....=.++. +++-+.||||
T Consensus       132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             cccCCCCCccccCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            2211      112358999999997431 111221         12678899999877777655554 4689999987

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PLN02671 pectinesterase

Probab=95.51  E-value=0.23  Score=50.61  Aligned_cols=111  Identities=13%  Similarity=0.238  Sum_probs=71.1

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeccc---ceEEeC-----------C--------cEE
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ---RVKLTG-----------K--------GLR  149 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~---g~~I~G-----------~--------gl~  149 (377)
                      |+++||++    ...+++|+--.|+.  .+.|.|.   +++||+|.|.   ...|..           .        .+.
T Consensus        73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~  150 (359)
T PLN02671         73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT  150 (359)
T ss_pred             CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence            68888865    22244455457887  5677773   6899999863   334441           0        133


Q ss_pred             EeeeccEEEeeeEEeCCCC-----CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          150 LKECEHVIICNLEFEGGKG-----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       150 i~~a~NVIIRnL~ir~g~~-----~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      + .+++++.+||+|+....     ...-|+.+.-.++++-+.+|.|.-..|-|++-   ...--+.+|.|.
T Consensus       151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe  217 (359)
T PLN02671        151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ  217 (359)
T ss_pred             E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence            3 47899999999997621     11233433334788999999999888888754   223445666665

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=95.04  E-value=0.52  Score=46.91  Aligned_cols=140  Identities=15%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCC-----CCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYD-----DGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~-----Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      +.|+.++|+-|-.+--..  .--+-++.|. .+.||+|...+|....     +..|.+..++.+|=|-.|.|..+....-
T Consensus        95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~  171 (345)
T COG3866          95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS  171 (345)
T ss_pred             EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence            566656666554332110  0114578886 6899999999998765     3448887788999999999987655321


Q ss_pred             ecCCCCCC--CCcceeEEEecceecCCCC---------CCCccccC--eeEEEcceEEcCccceeeecCCceEEEEceeE
Q 017111          223 IGADPSHV--ADRCIRVTIHHCFFDGTRQ---------RHPRVRYA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY  289 (377)
Q Consensus       223 iG~~d~~~--~d~~~~VT~hhNlf~~~~~---------R~Pr~r~G--~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F  289 (377)
                      --+.|..+  ....-.||+..|.|++..-         -++-  .|  .+.+-+|||.|.-...=..|-+ ++.+-+|||
T Consensus       172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriRfG-~vHvyNNYy  248 (345)
T COG3866         172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIRFG-MVHVYNNYY  248 (345)
T ss_pred             ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceEee-EEEEecccc
Confidence            11112111  1112479999999976432         2222  12  3678899999865443333332 566779999


Q ss_pred             ecCC
Q 017111          290 EAGQ  293 (377)
Q Consensus       290 ~~g~  293 (377)
                      +.-+
T Consensus       249 ~~~~  252 (345)
T COG3866         249 EGNP  252 (345)
T ss_pred             ccCc
Confidence            9443

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=93.82  E-value=0.25  Score=52.74  Aligned_cols=135  Identities=20%  Similarity=0.319  Sum_probs=85.7

Q ss_pred             CCCeEEEEEeceEEEecc------e---eE-e-ccCcceeecccceEEeC----CcEEEeeeccEEEeeeEEeCCCCCCC
Q 017111          107 KEPLWIVFEVSGTIHLRS------H---LS-V-SSYKTIDGRGQRVKLTG----KGLRLKECEHVIICNLEFEGGKGPDV  171 (377)
Q Consensus       107 ~~Pr~IVf~vsG~I~l~~------~---l~-V-~sn~TI~G~G~g~~I~G----~gl~i~~a~NVIIRnL~ir~g~~~~~  171 (377)
                      ..|+.+.|.--..+.+..      +   +. + .+|+||.+.  .+...+    .||.+..++||.|.+.+|..+    +
T Consensus       236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D  309 (542)
T COG5434         236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D  309 (542)
T ss_pred             cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence            467777765433333321      1   11 1 256677654  222223    388998999999999999975    4


Q ss_pred             CceEecC-----------CCceEEEEceeeecCCCCceEee---eCCceEEEeCceecCCCceeEecCCCCCCCCcceeE
Q 017111          172 DAIQIKP-----------KSKHIWIDRCSLRDYDDGLIDIT---RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV  237 (377)
Q Consensus       172 DaI~i~~-----------~s~nVwIDHcs~s~~~Dglidi~---~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~V  237 (377)
                      |+|.+..           -+++|||-||-|+.++-+++.-.   .+-.+|++.+|.|.+.+.+.-|....... ....+|
T Consensus       310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI  388 (542)
T COG5434         310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI  388 (542)
T ss_pred             ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence            6665541           24789999999998777755432   23579999999999877766665432211 112377


Q ss_pred             EEecceecCCC
Q 017111          238 TIHHCFFDGTR  248 (377)
Q Consensus       238 T~hhNlf~~~~  248 (377)
                      +|+.+...+..
T Consensus       389 ~~~~~~~~nv~  399 (542)
T COG5434         389 VFEDNKMRNVK  399 (542)
T ss_pred             EEecccccCcc
Confidence            77777666553

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=90.79  E-value=0.57  Score=48.65  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             eEEEecceecCCCCC--CCcccc-Cee-EEEcceEEcCc
Q 017111          236 RVTIHHCFFDGTRQR--HPRVRY-AKV-HLYNNYTRNWG  270 (377)
Q Consensus       236 ~VT~hhNlf~~~~~R--~Pr~r~-G~~-hv~NN~~~n~~  270 (377)
                      +-++..|+|-.+..+  ..-+|. |.- .|+|||+++..
T Consensus       246 ~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~  284 (425)
T PF14592_consen  246 RNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLT  284 (425)
T ss_dssp             S-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESS
T ss_pred             CceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccc
Confidence            446667777665543  455653 444 47888888653

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=89.08  E-value=2.3  Score=43.18  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             eeEeccCcceeecccceEEeCC--cEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCce
Q 017111          125 HLSVSSYKTIDGRGQRVKLTGK--GLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (377)
Q Consensus       125 ~l~V~sn~TI~G~G~g~~I~G~--gl~i~~a~NVIIRnL~ir~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dgli  198 (377)
                      .|.|....|-++. ....|.|.  ||.+.++..+.|+.-+|.+-..    ..++||.+. ++..+-|--++++...|+..
T Consensus        99 gI~v~~~at~A~V-r~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy  176 (408)
T COG3420          99 GIFVGRTATGAVV-RHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY  176 (408)
T ss_pred             eEEeccCcccceE-EcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence            4666666666665 22345554  5777889999999999987542    348999998 88999999999999999954


Q ss_pred             EeeeCCceEEEeCceecCCCce
Q 017111          199 DITRESTDITVSRCHFSSHDKT  220 (377)
Q Consensus       199 di~~~s~~vTIS~n~f~~h~k~  220 (377)
                       + .-+..-+++.|.|++-.++
T Consensus       177 -~-~~S~~~~~~gnr~~~~Ryg  196 (408)
T COG3420         177 -S-DTSQHNVFKGNRFRDLRYG  196 (408)
T ss_pred             -E-cccccceecccchhheeee
Confidence             3 3477888899988875443

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=87.71  E-value=3.6  Score=38.34  Aligned_cols=88  Identities=22%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             ceEEEeCceecCCCc--eeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccC-------eeEEEcceEEcCccce
Q 017111          205 TDITVSRCHFSSHDK--TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYA-------KVHLYNNYTRNWGIYA  273 (377)
Q Consensus       205 ~~vTIS~n~f~~h~k--~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~--r~G-------~~hv~NN~~~n~~~~a  273 (377)
                      ++|-|=+|.|.+-.-  ..|+|...+...+....|.+|||.|-.+.. +|.+  ..|       ..-+.||+|+..-..|
T Consensus         2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa   80 (198)
T PF08480_consen    2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA   80 (198)
T ss_pred             CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence            578888888886443  346777655555555689999999977543 4444  333       3478999998654333


Q ss_pred             ee----------ecCCceEEEEceeEecCC
Q 017111          274 VC----------ASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       274 i~----------~~~~a~v~~e~N~F~~g~  293 (377)
                      +.          .+.+-...+.+|.+.+..
T Consensus        81 i~~~y~~~~~sp~gsgyttivRNNII~NT~  110 (198)
T PF08480_consen   81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTR  110 (198)
T ss_pred             EEEEecccccCCCCCceEEEEEcceEeeee
Confidence            31          112334555677776654

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]

Probab=87.52  E-value=7.3  Score=39.45  Aligned_cols=147  Identities=11%  Similarity=0.129  Sum_probs=89.8

Q ss_pred             ChhHHHhhhc-----CCCeEEEEEeceEEEecceeEec-cC--cceeecccc--eEEe-----C---C--cEE-------
Q 017111           97 PGSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GLR-------  149 (377)
Q Consensus        97 ~GSLr~Ai~~-----~~Pr~IVf~vsG~I~l~~~l~V~-sn--~TI~G~G~g--~~I~-----G---~--gl~-------  149 (377)
                      --|.++||++     ...|.+++-..|.+  ++.|.|. ++  +|+.|.+..  -+.+     +   .  +..       
T Consensus        94 f~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss  171 (405)
T COG4677          94 FTTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSS  171 (405)
T ss_pred             hHHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccc
Confidence            3467888765     23466666667887  5667775 45  899998643  2222     1   1  111       


Q ss_pred             -------------EeeeccEEEeeeEEeCCCC--CC---CCceEecCCCceEEEEceeeecCCCCceEeeeCCc------
Q 017111          150 -------------LKECEHVIICNLEFEGGKG--PD---VDAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST------  205 (377)
Q Consensus       150 -------------i~~a~NVIIRnL~ir~g~~--~~---~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~------  205 (377)
                                   +...++.+++||+|+...+  ..   --|+-+...++.++|..|.+--..|-++.-..+..      
T Consensus       172 ~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn  251 (405)
T COG4677         172 RSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN  251 (405)
T ss_pred             hhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccC
Confidence                         1135789999999996432  11   13555655678899999999988888765543211      


Q ss_pred             ---eEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017111          206 ---DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       206 ---~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                         .--+.+|.|+.| --+++|+.         .+-||+|-|.-+..|.+-..
T Consensus       252 ~~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g  294 (405)
T COG4677         252 RQPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG  294 (405)
T ss_pred             cchhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence               122346666533 23455543         45678887877788875443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
1pxz_A	346	1.7 Angstrom Crystal Structure Of Jun A 1, The Majo		3e-35
1vbl_A	416	Structure Of The Thermostable Pectate Lyase Pl 47 L		2e-25
3zsc_A	340	Catalytic Function And Substrate Recognition Of The		7e-24
3vmv_A	326	Crystal Structure Of Pectate Lyase Bsp165pela From		2e-20
1bn8_A	420	Bacillus Subtilis Pectate Lyase Length = 420		2e-16
1pcl_A	355	Unusual Structural Features In The Parallel Beta-He		3e-16
2bsp_A	420	Bacillus Subtilis Pectate Lyase R279k Mutant Length		3e-16
3krg_A	399	Structural Insights Into Substrate Specificity And		8e-16
2nzm_A	399	Hexasaccharide I Bound To Bacillus Subtilis Pectate		1e-15
1jrg_A	361	Crystal Structure Of The R3 Form Of Pectate Lyase A		2e-13
1ooc_A	361	Mutations In The T1.5 Loop Of Pectate Lyase A Lengt		2e-13
2qxz_A	330	Pectate Lyase R236f From Xanthomonas Campestris Len		1e-07
2qy1_A	330	Pectate Lyase A31g/r236f From Xanthomonas Campestri		1e-07
2qx3_A	330	Structure Of Pectate Lyase Ii From Xanthomonas Camp		8e-07
1plu_A	353	Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu		3e-05
2ewe_A	353	Crystal Structure Of Pectate Lyase C R218k Mutant I		7e-05

>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 27/251 (10%)
Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHL 122
           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I L
Sbjct: 21  LADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL 80
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVII-------CNLEFEG-------- 165
           +  L V+ +KTIDGRG  V L   G  L +++  HVI+       CN    G        
Sbjct: 81  KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESI 140
Query: 166 GKGP----DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           G  P    D DAI ++    + WID  SL D  DGLID+T  ST IT+S  HF +H K M
Sbjct: 141 GVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVM 199
Query: 222 LIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+G D ++  D+ ++VT+  + F     QR PR RY  VH+ NN    W IYA+  S + 
Sbjct: 200 LLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNP 259
Query: 281 QIYSQCNIYEA 291
            I S+ N + A
Sbjct: 260 TILSEGNSFTA 270

>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 125/276 (45%), Gaps = 55/276 (19%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + V S  +I G G+  K+ G G  +K  ++VII N+EFE                G 
Sbjct: 125 RIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGE 184
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209
              + D+I I+  S HIWID  +  D D                 DG +DI   S  IT+
Sbjct: 185 WNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITI 243
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           S   F++HDK  LIGA  S +AD   +RVT+HH ++    QR PRVR+ +VH+YNNY   
Sbjct: 244 SYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEF 303
Query: 269 WGI------YAVCASVDSQIYSQCN------------IYEAGQKKMAFKYLTEKASDKEE 310
             +      YA    V SQIY+Q N            I +   K     Y T    D   
Sbjct: 304 SNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPN 363
Query: 311 AR--TDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPS 344
            R   D + S  + ++L+LK  +  +   +++ HP+
Sbjct: 364 GRRYIDLVASYNESNTLQLKKEVTWKPMFYHVIHPT 399

>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 34/243 (13%)
Query: 79  IGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--RSHLSVSSYKTIDG 136
           +GGL G +  V T  +    +  EG         V  V GTI    +  + V S KTI G
Sbjct: 22  VGGLGGEIVFVRTAEELEKYTTAEGKY-------VIVVDGTIVFEPKREIKVLSDKTIVG 74
Query: 137 RGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGPDVDAIQIKPKSKHIWIDRC 188
                K+ G GL +K+ ++VII N+ FEG        GK  D D I ++  S HIWID  
Sbjct: 75  I-NDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHI 132
Query: 189 SLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA----DPSHVADRCIRVTIHHCFF 244
           +  + +DG +DI + S  ITVS   F  HDK  L+G+    DP   A +  +VT HH +F
Sbjct: 133 TFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQ-AGQAYKVTYHHNYF 191
Query: 245 DGTRQRHPRVRYAKVHLYNNY----------TRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
               QR PR+R+   H++NN+             + IY V +++ ++++ + N +     
Sbjct: 192 KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGA 251
Query: 295 KMA 297
            MA
Sbjct: 252 VMA 254

>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 133 TIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSL-- 190
           +I G G   +  G G+RL    ++II N+     +  +  AI++   SK++WID      
Sbjct: 82  SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 191 -------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADRCIRVTIHHC 242
                   DY DGL+D+ R +  ITVS   F +H KTML+G  D + +A    ++T HH 
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD--KITYHHN 199
Query: 243 FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
           +F+    R P +RYA VH++NNY ++    A+ + V ++++ + N ++
Sbjct: 200 YFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFD 247

>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347

>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PD 170
           RS +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G   +
Sbjct: 73  RSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAE 132
Query: 171 VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCH 213
            DA  I   S ++W+D  ++ D                   DG +DI + S  +T+S   
Sbjct: 133 WDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSR 191
Query: 214 FSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct: 192 FELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244

>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    Q+ PRVR+ +VH+YNNY   
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347

>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 179 WASQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HD + + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326

>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    Q  PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326

>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 54/227 (23%)
Query: 86  LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
           +Y VT +++    +L  G   K     + ++ GTI +              RS +++ + 
Sbjct: 35  IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
            T+ G G   K     L +   +   +VII N+           +E G G   + DA+ I
Sbjct: 89  TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
              + H+WID  ++ D +                 DG +DI R S  +T+S      HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           TMLIG  D +   D+  + VT+ +  F+   +R PRVRY  +H +NN
Sbjct: 209 TMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255

>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 54/227 (23%)
Query: 86  LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
           +Y VT +++    +L  G   K     + ++ GTI +              RS +++ + 
Sbjct: 35  IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
            T+ G G   K     L +   +   +VII N+           +E G G   + DA+ I
Sbjct: 89  TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
              + H+WID  ++ D +                 DG +DI R S  +T+S      HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           TMLIG +D +   D+  + VT+ +  F+   +R PRVRY  +H +NN
Sbjct: 209 TMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255

>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R+   H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R+   H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R    H+YNNY  N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225

>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
           G+ +K+   V++ N+   +  G   D D I++   S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
              +  +DI   S  +TVS  +     K   +G D S  +D    +T HH +++    R 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 252 PRVRYAKVHLYNNYTRN 268
           P  R   VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236

>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
           G+ +K+   V++ N+   +  G   D D I++   S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
              +  +DI   S  +TVS  +     K   +G D S  +D    +T HH +++    + 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 252 PRVRYAKVHLYNNYTRN 268
           P  R   VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	3e-81
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	4e-81
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	5e-75
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	6e-65
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	1e-62
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	9e-62
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	2e-60
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	2e-54
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	3e-54
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	9e-54
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	9e-51
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	3e-06
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	6e-05
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	1e-04
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	7e-04

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340

 Score =  251 bits (641), Expect = 3e-81
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 41/320 (12%)

Query: 66  ALAGQAEGFGRL--------AIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVS 117
           +L  +  GF  +         +GGL G +  V T  +     L +    +    IV + +
Sbjct: 1   SLNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIVVDGT 55

Query: 118 GTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGP 169
                +  + V S KTI G     K+ G GL +K+ ++VII N+ FEG        GK  
Sbjct: 56  IVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKY 114

Query: 170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
           D D I ++  S HIWID  +  + +DG +DI + S  ITVS   F  HDK  L+G+    
Sbjct: 115 DFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKE 173

Query: 230 VAD---RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNW----------GIYAVCA 276
             +   +  +VT HH +F    QR PR+R+   H++NN+               IY V +
Sbjct: 174 DPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233

Query: 277 SVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLS----SLKLKAGLM 332
           ++ ++++ + N +      MA   +    +         +      +        +  + 
Sbjct: 234 AMGAKVHVEGNYFMGYGAVMAEAGIAFLPTRIMGPVEGYLTLGEGDAKNEFYYCKEPEVR 293

Query: 333 AEAGEHNMFHPSEHYYTWTV 352
                     P E YY +T+
Sbjct: 294 PVEEGKPALDPRE-YYDYTL 312

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346

 Score =  251 bits (641), Expect = 4e-81
 Identities = 101/320 (31%), Positives = 145/320 (45%), Gaps = 28/320 (8%)

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEV 116
           D +   LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  
Sbjct: 15  DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQ 74

Query: 117 SGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVIICNLEFEGGK------- 167
           +  I L+  L V+ +KTIDGRG  V L   G  L +++  HVI+ +L   G         
Sbjct: 75  NMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDV 134

Query: 168 ------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215
                         D DAI ++    + WID  SL D  DGLID+T  ST IT+S  HF 
Sbjct: 135 LVSESIGVEPVHAQDGDAITMRN-VTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFF 193

Query: 216 SHDKTMLIGADPSHVADRCIRVTIHHC-FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAV 274
           +H K ML+G D ++  D+ ++VT+    F     QR PR RY  VH+ NN    W IYA+
Sbjct: 194 NHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI 253

Query: 275 CASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKE-EARTDCIRSEGDLSSLKLKAGLMA 333
             S +  I S+ N + A  +    +       +          RS  D            
Sbjct: 254 GGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSG 313

Query: 334 EAGEHNMFHPSEHYYTWTVA 353
           +  E N+++ +E +      
Sbjct: 314 KTEETNIYNSNEAFKVENGN 333

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326

 Score =  234 bits (599), Expect = 5e-75
 Identities = 68/286 (23%), Positives = 116/286 (40%), Gaps = 34/286 (11%)

Query: 68  AGQAEGFGRL---AIGGLHGPLYHVTTLAD--DGPGSLREGCRMKEPLWIVFEVSGTIHL 122
           +   +G+  +     GG  G + + +T A       +        EPL I   V+GTI  
Sbjct: 1   SNGPQGYASMNGGTTGGAGGRVEYASTGAQIQQLIDNRSRSNNPDEPLTIY--VNGTITQ 58

Query: 123 RSH-------------LSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP 169
            +                     +I G G   +  G G+RL    ++II N+     +  
Sbjct: 59  GNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREG 118

Query: 170 DVDAIQIKPKSKHIWIDRCSL---------RDYDDGLIDITRESTDITVSRCHFSSHDKT 220
           +  AI++   SK++WID              DY DGL+D+ R +  ITVS   F +H KT
Sbjct: 119 EGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKT 178

Query: 221 MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           ML+G   +       ++T HH +F+    R P +RYA VH++NNY ++    A+ + V +
Sbjct: 179 MLVGHTDNASLAP-DKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGA 237

Query: 281 QIYSQCNIYEAG----QKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
           +++ + N ++                          T      G++
Sbjct: 238 RVFVENNYFDNVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNV 283

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355

 Score =  209 bits (533), Expect = 6e-65
 Identities = 80/359 (22%), Positives = 131/359 (36%), Gaps = 62/359 (17%)

Query: 63  SLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL 122
           +  A  G A   G    G        V  ++D      ++     +    + +V+G I +
Sbjct: 4   TDAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDI 58

Query: 123 --------------RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG--- 165
                         RS +S+ S  TI G G   K T   L +K  ++VI+ NL  E    
Sbjct: 59  SGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVD 118

Query: 166 ---------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLID 199
                    G   + DA  I   S ++W+D  ++ D                   DG +D
Sbjct: 119 VAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALD 177

Query: 200 ITRESTDITVSRCHFSSHDKTMLIGADPSHVADR--CIRVTIHHCFFDGTRQRHPRVRYA 257
           I + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+ 
Sbjct: 178 IKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFG 237

Query: 258 KVHLYNNYTRN-------WGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE 310
            +H YNN             +Y+        I S+ N +     K       E +  K+ 
Sbjct: 238 SIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNPECSIVKQ- 296

Query: 311 ARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGW 369
                + S+   S +        +      + P+   Y ++    T +L   +    G+
Sbjct: 297 -FNSKVFSDKG-SLVNGSTTTKLDTCGLTAYKPTL-PYKYSAQTMTSSLATSINNNAGY 352

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361

 Score =  203 bits (518), Expect = 1e-62
 Identities = 71/347 (20%), Positives = 121/347 (34%), Gaps = 58/347 (16%)

Query: 71  AEGFGRLAIGGLHGPLYHVTTLADD--------GPGSLREGCRMKEPLWIVFEVSGTIHL 122
             GF           +Y VT +++             ++    +       +        
Sbjct: 20  QNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKA 79

Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECE---HVIICNLEFE------------GGK 167
           RS +++ +  T+ G G   K     L +   +   +VII N+  +             G 
Sbjct: 80  RSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGW 139

Query: 168 GPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210
             + DA+ I   + H+WID  ++ D +                 DG +DI R S  +T+S
Sbjct: 140 NAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTIS 199

Query: 211 RCHFSSHDKTMLIGA-DPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
                 HDKTMLIG  D +   D+  + VT+ +  F+   +R PRVRY  +H +NN  + 
Sbjct: 200 NSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKG 259

Query: 269 -------WGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGD 321
                     Y+        + S+ N +              KA    +     I S+  
Sbjct: 260 DAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA------NLSASKACKVVKKFNGSIFSDNG 313

Query: 322 LSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTG 368
                L    +  +G     + S+  Y + V   T  L Q +    G
Sbjct: 314 SV---LNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAG 357

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330

 Score =  200 bits (510), Expect = 9e-62
 Identities = 59/330 (17%), Positives = 99/330 (30%), Gaps = 40/330 (12%)

Query: 71  AEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRS------ 124
             G+G    GG +    +V T                    +V   +G     +      
Sbjct: 2   PVGYGAGTTGGGNKVPVNVATFEAMQSAI----DSYSGSGGLVLNYTGKFDFGTIKDVCA 57

Query: 125 ---------HLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKGP-DVDA 173
                     +   S  TI G          G+R+     +VII N+     +G  D D+
Sbjct: 58  QWKLPAKTVQIKNKSDVTIKGAN--GSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADS 115

Query: 174 IQI----KPKSKHIWIDRCSL-----------RDYDDGLIDITRESTDITVSRCHFSSHD 218
           I +      +   IW+D  ++               DG ID+ +    +TVS  +  ++ 
Sbjct: 116 ISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQ 175

Query: 219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASV 278
           K  L G   S   +   R T HH  F+    R P  R+   H+YNNY  N     +   +
Sbjct: 176 KVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRM 235

Query: 279 DSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEH 338
                 + N +E  +  +  +  +E                                   
Sbjct: 236 GGIAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWGTPDGSKPYANATNWIST 295

Query: 339 NMFHPSEHYYTWTVAERTDNLKQLLQRCTG 368
            +F  S   Y +T       +K  +    G
Sbjct: 296 KVFPESL-GYIYT-VTPAAQVKAKVIATAG 323

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353

 Score =  197 bits (502), Expect = 2e-60
 Identities = 50/270 (18%), Positives = 88/270 (32%), Gaps = 39/270 (14%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMK-----EPLWIVFEVSGTI 120
              G A   G    G +      +  + +    +  +    K      PL I +  +   
Sbjct: 3   DTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDS 62

Query: 121 HLRSHLS---------------VSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG 165
            + +  +                   K I   G        G+ +K+   V++ N+    
Sbjct: 63  LINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGY 122

Query: 166 GKG--PDVDAIQIKPKSKHIWIDRCSLRDYD-------------DGLIDITRESTDITVS 210
             G   D D I++   S ++W+D   L   +             +  +DI   S  +TVS
Sbjct: 123 LPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVS 181

Query: 211 RCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG 270
             +     K  L G+  S   D    +T HH +++    R P  R   VH YNN   N  
Sbjct: 182 YNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNIT 238

Query: 271 IYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
              +    + Q   + N +E     +  +Y
Sbjct: 239 GSGLNVRQNGQALIENNWFEKAINPVTSRY 268

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416

 Score =  184 bits (466), Expect = 2e-54
 Identities = 81/289 (28%), Positives = 120/289 (41%), Gaps = 43/289 (14%)

Query: 68  AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL-RSHL 126
               +    +       P +       +   +      ++ PL      S      R  +
Sbjct: 69  LNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMV 128

Query: 127 SVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPD 170
            V S  +I G G+  K+ G G  +K  ++VII N+EFE                G    +
Sbjct: 129 YVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSE 188

Query: 171 VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCH 213
            D+I I+  S HIWID  +  D D                 DG +DI   S  IT+S   
Sbjct: 189 YDSISIEGSS-HIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNV 247

Query: 214 FSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI- 271
           F++HDK  LIGA  S +AD   +RVT+HH ++    QR PRVR+ +VH+YNNY     + 
Sbjct: 248 FTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLA 307

Query: 272 -----YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDC 315
                YA    V SQIY+Q N +      +    + +  S  EE+  + 
Sbjct: 308 DYDFQYAWGVGVFSQIYAQNNYFSFD-WDIDPSLIIKVWSKNEESMYET 355

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359

 Score =  181 bits (461), Expect = 3e-54
 Identities = 52/314 (16%), Positives = 96/314 (30%), Gaps = 61/314 (19%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVT----------------------------------- 90
            + G AEGF     GG      + T                                   
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTT 61

Query: 91  -----------TLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQ 139
                       +A +              + + ++ +G + +     V+S K+I G+G 
Sbjct: 62  GCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPIT----VNSNKSIVGQGT 117

Query: 140 RVKLTGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDYD 194
           +  + GKGLR+    ++VII N+         V   DAI +   S  +WID  +  R   
Sbjct: 118 KGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD-SDLVWIDHVTTARIGR 176

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA----DRCIRVTIHHCFFDGTRQR 250
             ++  T     +T+S                  +           VT+   +F     R
Sbjct: 177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGR 236

Query: 251 HPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKE 309
            P+V+    +H  NN   N+  +A        + ++ N+++     +      +  S  +
Sbjct: 237 MPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPD 296

Query: 310 EARTDCIRSEGDLS 323
                   S    S
Sbjct: 297 ANTNQQCASVFGRS 310

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359

 Score =  180 bits (458), Expect = 9e-54
 Identities = 53/307 (17%), Positives = 93/307 (30%), Gaps = 53/307 (17%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTT-------LADDGPG-------------------- 98
            ++G AEGF +   GG      +  T       L DD                       
Sbjct: 2   GVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGT 61

Query: 99  ---------------SLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL 143
                             + C   EP      V         ++V+S K++ G G    +
Sbjct: 62  GCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAI 121

Query: 144 TGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDYDDGLI 198
            GKGLR+    E++II N+         V   DAI +      +WID  +  R      +
Sbjct: 122 KGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQHYV 180

Query: 199 DITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQRHPRV 254
             T     ++++  +               +    +      VT+   +   T  R P+V
Sbjct: 181 LGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240

Query: 255 RYAK-VHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEART 313
           +    +H  NNY  +   +A        + ++ N+++     +              A  
Sbjct: 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGE 300

Query: 314 DCIRSEG 320
            C    G
Sbjct: 301 VCSTYLG 307

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399

 Score =  173 bits (440), Expect = 9e-51
 Identities = 62/280 (22%), Positives = 99/280 (35%), Gaps = 47/280 (16%)

Query: 69  GQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSV 128
            +  G             Y    L    P +  +                    R  + +
Sbjct: 70  LKPLGLNDYKDPEYDLDKY----LKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDI 125

Query: 129 SSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVD 172
            +  TI G G   K+ G   ++K  ++VII N+EF+                G      D
Sbjct: 126 PANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYD 184

Query: 173 AIQIKPKSKHIWIDRCSLR-----------------DYDDGLIDITRESTDITVSRCHFS 215
            I I   + HIWID C+                    + DG  D +  +  IT+S  ++ 
Sbjct: 185 NITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243

Query: 216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG---- 270
            HDK+ + G+  S  +D   +++T+HH  +    Q  PRVR+ +VH+YNNY         
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSS 303

Query: 271 ---IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASD 307
               YA      S+IY+Q N+ +      A          
Sbjct: 304 YPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGT 343

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL---------I 198
           +   E  +V+   L  +     + D I+    S+++ +        DD +          
Sbjct: 357 IMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDDCINFAAGTGEKA 415

Query: 199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR 248
                     +   +F      ++ G   SH       +   +     T 
Sbjct: 416 QEQEPMKGAWLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTD 462

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Length = 506

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 22/173 (12%)

Query: 118 GTIHLRSHLSVSSYKTIDG-RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP-----DV 171
             + + +        TI      +V  TG        EH+I+  + F+ G          
Sbjct: 57  VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSH 116

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDG--------LIDITRESTDITVSRCHF---SSHDKT 220
               +     +  I  C    +D+         L +  +      +  C F    + D+ 
Sbjct: 117 GPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQV 176

Query: 221 MLIGADPSHVAD-----RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           + +      + D       +   + HCFF   ++        ++  Y N    
Sbjct: 177 INLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGR 229

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 153 CEHVIICNLEFEG-GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI-----TRESTD 206
            +         +      + D I     SK+I I   ++   DD  + I       E+ +
Sbjct: 182 GDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAYKGRAETRN 239

Query: 207 ITVSRCHF-SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
           I++    F + H   M IG++   V +    VT+     +GT
Sbjct: 240 ISILHNDFGTGH--GMSIGSETMGVYN----VTVDDLKMNGT 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	100.0
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	100.0
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	100.0
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	100.0
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	100.0
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	100.0
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	100.0
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	100.0
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	100.0
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	100.0
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	100.0
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	98.81
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	98.77
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	98.71
2inu_A	410	Insulin fructotransferase; right-handed parallel b	98.69
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.68
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.67
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.54
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.4
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.32
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.25
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.24
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	98.24
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.13
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.13
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.13
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.08
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.04
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	98.01
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.88
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	97.83
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	97.79
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	97.77
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	97.75
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	97.74
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.71
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	97.67
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	97.66
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	97.64
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	97.62
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.58
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.45
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	97.38
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.37
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.29
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	97.28
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.2
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	97.13
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.02
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	97.0
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	96.91
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	96.89
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	96.86
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	96.8
2inu_A	410	Insulin fructotransferase; right-handed parallel b	96.66
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	96.63
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	96.45
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	96.44
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	96.42
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	96.29
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	96.18
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	96.03
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	95.98
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	95.47
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	95.08
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	94.84
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	93.91
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	93.85
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	82.91

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=100.00  E-value=6.6e-71  Score=547.21  Aligned_cols=301  Identities=34%  Similarity=0.505  Sum_probs=257.8

Q ss_pred             cccccccCCcccccCCCCCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeec
Q 017111           62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGR  137 (377)
Q Consensus        62 ~~~~~~a~~a~Gfg~~ttGG~gG~vv~VT~l~ds----g~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~  137 (377)
                      .++|+|++||||||++||||+||+||+||+|+|+    +|||||+||++++||||||+++|+|+|+++|.|.|||||+|+
T Consensus        16 ~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~   95 (346)
T 1pxz_A           16 QNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGR   95 (346)
T ss_dssp             TCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECT
T ss_pred             hhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEcc
Confidence            5678888899999999999999999999999998    899999999999999999999999999999999999999999


Q ss_pred             ccceEEeC--CcEEEeeeccEEEeeeEEeCCC-------------------CCCCCceEecCCCceEEEEceeeecCCCC
Q 017111          138 GQRVKLTG--KGLRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDG  196 (377)
Q Consensus       138 G~g~~I~G--~gl~i~~a~NVIIRnL~ir~g~-------------------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg  196 (377)
                      |..++|.|  .+|+|+.++|||||||+|+...                   ..+.|||.|. ++++||||||+|+|+.||
T Consensus        96 ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg  174 (346)
T 1pxz_A           96 GADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDG  174 (346)
T ss_dssp             TSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSE
T ss_pred             CCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCCC
Confidence            99999997  5899999999999999999752                   2568999997 899999999999999999


Q ss_pred             ceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeccee-cCCCCCCCccccCeeEEEcceEEcCccceee
Q 017111          197 LIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVC  275 (377)
Q Consensus       197 lidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf-~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~  275 (377)
                      ++|+++++++||||||+|++|+|++|||++|+...|+.++||||||+| +++.+|+||+|+|++|++||||++|+.|+++
T Consensus       175 ~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~  254 (346)
T 1pxz_A          175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG  254 (346)
T ss_dssp             EEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEE
T ss_pred             cEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEe
Confidence            999999999999999999999999999999877777789999999999 9999999999999999999999999999999


Q ss_pred             ecCCceEEEEceeEecCCcc---ceeeeeccccCCcccCCCceEEecCCeeecccccccccccCCcccccCCCCCCcccc
Q 017111          276 ASVDSQIYSQCNIYEAGQKK---MAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTV  352 (377)
Q Consensus       276 ~~~~a~v~~e~N~F~~g~~~---~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~  352 (377)
                      +++++++++|+|||+.++.+   .+.+.+...  .......++|++++|+|+||+.............|.++  | .|++
T Consensus       255 ~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~--~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~y~~~--~-~~~~  329 (346)
T 1pxz_A          255 GSSNPTILSEGNSFTAPSESYKKEVTKRIGCE--SPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSN--E-AFKV  329 (346)
T ss_dssp             EESCCEEEEESCEEECCSCGGGCBSEEECSCS--CHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTT--T-CCCC
T ss_pred             ccCCceEEEECCEEECCCCCcccccEEEeccC--CccccccccEecCCCeEEeceEecCCCCCccCCCCCcc--c-cccc
Confidence            99999999999999999752   233222100  00111345799999999999875321110111123333  3 5899


Q ss_pred             cchHHHHHHHHHhCcCCC
Q 017111          353 AERTDNLKQLLQRCTGWQ  370 (377)
Q Consensus       353 ~~As~avk~vv~~~AG~~  370 (377)
                      ++|+ +|+.+ .++||+.
T Consensus       330 ~~~~-~v~~~-~~~aG~~  345 (346)
T 1pxz_A          330 ENGN-AAPQL-TKNAGVV  345 (346)
T ss_dssp             CCGG-GHHHH-TTTCSSC
T ss_pred             CCHH-HHHHH-hhhccCC
Confidence            9986 78866 7799985

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-70  Score=541.30  Aligned_cols=292  Identities=27%  Similarity=0.409  Sum_probs=248.7

Q ss_pred             cccc-CCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--ceeEeccCcceeecccce
Q 017111           65 RALA-GQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--SHLSVSSYKTIDGRGQRV  141 (377)
Q Consensus        65 ~~~a-~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~--~~l~V~sn~TI~G~G~g~  141 (377)
                      ..|| -.|||||++||||+||++|+||||+|     ||+||++++||||+  |+|+|+++  ++|+|.|||||+|+|.. 
T Consensus         7 ~G~As~~AeG~g~~ttGG~gG~v~~VTtl~d-----Lr~al~~~~PriIv--v~G~I~~~~~~~l~v~snkTI~G~ga~-   78 (340)
T 3zsc_A            7 VGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIV--VDGTIVFEPKREIKVLSDKTIVGINDA-   78 (340)
T ss_dssp             CSGGGCCCSSCTTSCCTTTTSEEEEECSHHH-----HHHHHTSSSCEEEE--EEEEEEEEEEEEEEECSSEEEEEEEEE-
T ss_pred             ceeecccccccCCCCccCCCceEEEeCCHHH-----HHHHHhCCCCEEEE--ECcEEEeCCcceEEecCCCEEEeccCc-
Confidence            3444 36999999999999999999999999     99999999999998  68999998  89999999999999877 


Q ss_pred             EEeCCcEEEeeeccEEEeeeEEeCCCC--------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCce
Q 017111          142 KLTGKGLRLKECEHVIICNLEFEGGKG--------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (377)
Q Consensus       142 ~I~G~gl~i~~a~NVIIRnL~ir~g~~--------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~  213 (377)
                      +|.|.+|+|++++|||||||+||.+..        .+.|||+|. +++|||||||+|+|+.||+||+++++++||||||+
T Consensus        79 ~I~G~Gi~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~  157 (340)
T 3zsc_A           79 KIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNK  157 (340)
T ss_dssp             EEEEEEEEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEE-SCEEEEEESCEEESCSSCSEEEETTCEEEEEESCE
T ss_pred             EEecCceEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEe-cCCcEEEEeeeeccCCccceEEecCCceEEEECcE
Confidence            899999999999999999999998741        268999997 79999999999999999999999899999999999


Q ss_pred             ecCCCceeEecCCCCCC--CCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEEc----------CccceeeecCCc
Q 017111          214 FSSHDKTMLIGADPSHV--ADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN----------WGIYAVCASVDS  280 (377)
Q Consensus       214 f~~h~k~~LiG~~d~~~--~d~-~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n----------~~~~ai~~~~~a  280 (377)
                      |++|+|+||+|++|+..  +|. .++||||||||+++.+|+||+|+|++|++||||++          |..|++++++++
T Consensus       158 f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~a  237 (340)
T 3zsc_A          158 FVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGA  237 (340)
T ss_dssp             EESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEESSEEEEESCEEECCCCCSCSSCCSCCEEEEEETTC
T ss_pred             eccCceeeEeCcCCCCccccccCCcEEEEECeEecCCCCCCCcccCCeEEEEccEEECCccccccccceeeeeEecCCCC
Confidence            99999999999988652  343 48999999999999999999999999999999999          999999999999


Q ss_pred             eEEEEceeEecCCc-----cceeeeeccccCCcccCCCceEEecC----CeeecccccccccccCCcccccCCCCCCccc
Q 017111          281 QIYSQCNIYEAGQK-----KMAFKYLTEKASDKEEARTDCIRSEG----DLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT  351 (377)
Q Consensus       281 ~v~~e~N~F~~g~~-----~~~~~~~~~~~~~~~~~~~G~~~~~g----n~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt  351 (377)
                      ++++|+|||++...     ..++.+.+.     ..+..|||...+    |.|.++.............+|.|.++| .|+
T Consensus       238 ~i~~E~N~F~~~~~~~~~~~~~~p~~~~-----~~~~~G~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~pY-~Y~  311 (340)
T 3zsc_A          238 KVHVEGNYFMGYGAVMAEAGIAFLPTRI-----MGPVEGYLTLGEGDAKNEFYYCKEPEVRPVEEGKPALDPREYY-DYT  311 (340)
T ss_dssp             EEEEESCEEECSCHHHHHTTCCBEEEEE-----CTTTBCEEEECCGGGCCEEESBCCCCCBCSSTTSCSCCGGGTC-CCC
T ss_pred             EEEEECcEEECCCccccccccccccccc-----CCCCceEEEecCcccceeeccCCCCccccccCCccccccCCCc-eee
Confidence            99999999999866     111122111     235789999999    888876432111101123456666656 499


Q ss_pred             ccchHHHHHHHHHhCcCCCcc
Q 017111          352 VAERTDNLKQLLQRCTGWQDV  372 (377)
Q Consensus       352 ~~~As~avk~vv~~~AG~~~~  372 (377)
                      +++|+ +||++|+..||++-.
T Consensus       312 l~~a~-~v~~~V~~~AG~gk~  331 (340)
T 3zsc_A          312 LDPVQ-DVPKIVVDGAGAGKL  331 (340)
T ss_dssp             CCCGG-GHHHHHHHHCSTTCC
T ss_pred             cCcHH-HhhHHHhhcCCCCee
Confidence            99985 899999999999754

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=100.00  E-value=4.3e-70  Score=536.81  Aligned_cols=286  Identities=27%  Similarity=0.405  Sum_probs=245.6

Q ss_pred             CcccccC---CCCCCCCCceEEecCCCCCCChhHHHhhh-------cCCCeEEEEEeceEEEec----ceeEec------
Q 017111           70 QAEGFGR---LAIGGLHGPLYHVTTLADDGPGSLREGCR-------MKEPLWIVFEVSGTIHLR----SHLSVS------  129 (377)
Q Consensus        70 ~a~Gfg~---~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~-------~~~Pr~IVf~vsG~I~l~----~~l~V~------  129 (377)
                      +|+|||+   +||||+||+||+||||+|     ||+||+       +++||+|+  |+|+|+|+    ++|+|.      
T Consensus         3 ~~~Gfa~~nggTtGG~gG~vv~Vttl~d-----L~~Al~~~~~~~~~~~p~iI~--V~G~I~l~~~~~~~i~v~~~~~~~   75 (326)
T 3vmv_A            3 GPQGYASMNGGTTGGAGGRVEYASTGAQ-----IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVKNHRGKA   75 (326)
T ss_dssp             CCSGGGGSTTCCCTTTTSEEEEESSHHH-----HHHHHHHHHHSSCTTSCEEEE--ECSEEESTTCSSSSEEESCTTCTT
T ss_pred             CCceeeecCCCCccCCCCeEEEECCHHH-----HHHHHhhcccccCCCCCEEEE--EeeEEecCCCCCceEEEecccccc
Confidence            5899999   599999999999999999     999999       88999887  99999998    789998      


Q ss_pred             ---cCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC---------CCCc
Q 017111          130 ---SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY---------DDGL  197 (377)
Q Consensus       130 ---sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~---------~Dgl  197 (377)
                         |||||+|+|.+++|.|.+|+|++++|||||||+|+.+..++.|+|+|...++|||||||+|+|+         .||+
T Consensus        76 ~~~sn~TI~G~g~~~~i~G~gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl  155 (326)
T 3vmv_A           76 HEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGL  155 (326)
T ss_dssp             SCEEEEEEEECTTCCEEESCCEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCS
T ss_pred             cCCCCeEEEecCCCeEEeCcEEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcc
Confidence               9999999999999999999999999999999999998877899999973389999999999975         4999


Q ss_pred             eEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeec
Q 017111          198 IDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCAS  277 (377)
Q Consensus       198 idi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~  277 (377)
                      ||+++++++||||||+|++|+|+||||++|+...+ ..+||||||||+++.+|+||+|+|++|++||||++|..|+++++
T Consensus       156 ~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~~-~~~vT~~~N~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~  234 (326)
T 3vmv_A          156 VDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLA-PDKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSR  234 (326)
T ss_dssp             EEECTTCEEEEEESCEEEEEEECEEECSSSCGGGC-CEEEEEESCEEEEEEECTTEEESCEEEEESCEEEEESSCSEEEE
T ss_pred             eEecCCCceEEEEceEEecCceEEEECCCCCCccc-CccEEEEeeEecCCcCcCCcccCCcEEEEccEEECCCceEEeec
Confidence            99999999999999999999999999998764321 35999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEceeEecCCccce---eeeeccc-cCCcccCCCceEEecCCeeecccccccccccCCcccccCCCCCCccccc
Q 017111          278 VDSQIYSQCNIYEAGQKKMA---FKYLTEK-ASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA  353 (377)
Q Consensus       278 ~~a~v~~e~N~F~~g~~~~~---~~~~~~~-~~~~~~~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~  353 (377)
                      +++++++|+|||+++....+   ...+... ....+++..|||...++.|+++....    ..+...|+|+  | .|+++
T Consensus       235 ~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~n~~~n~~~~~----~~~~~~~~p~--Y-~y~l~  307 (326)
T 3vmv_A          235 VGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPNSH----LNSTTNFTPP--Y-SYQVQ  307 (326)
T ss_dssp             TTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSCSSSBCEEEEESCEEESSCCTT----CCCCCCCCCS--S-CCCCC
T ss_pred             CCcEEEEEceEEECCcCccccccccccccceeeccCCCCceEEEEECCeEccCcCcc----cCCCcccccc--C-eeecC
Confidence            99999999999999821000   0000000 00113457899999999999874321    2345788887  5 48999


Q ss_pred             chHHHHHHHHHhCcCCCc
Q 017111          354 ERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       354 ~As~avk~vv~~~AG~~~  371 (377)
                      +|+ +||++|.+.||++-
T Consensus       308 ~a~-~V~~~V~~~AG~Gk  324 (326)
T 3vmv_A          308 SAT-QAKSSVEQHSGVGV  324 (326)
T ss_dssp             CHH-HHHHHHHHHCSSSS
T ss_pred             CHH-HhhHHHhccCCCcc
Confidence            985 89999999999974

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=100.00  E-value=1.2e-67  Score=521.03  Aligned_cols=281  Identities=21%  Similarity=0.274  Sum_probs=240.6

Q ss_pred             CcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhc---CCCeEEEEEeceEEEecc---------------eeEeccC
Q 017111           70 QAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRM---KEPLWIVFEVSGTIHLRS---------------HLSVSSY  131 (377)
Q Consensus        70 ~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~---~~Pr~IVf~vsG~I~l~~---------------~l~V~sn  131 (377)
                      +|||||++||||++|++|+||||+|     ||+||++   ++||||+|  +|+|++.+               +|+|.||
T Consensus         1 ga~Gfa~~ttGG~gg~~~~Vtt~~~-----L~~al~~~~~~~p~iI~~--~G~i~~~~~~~~c~~~~~~~~~~~l~v~sn   73 (330)
T 2qy1_A            1 GPVGYGAGTTGGGNKVPVNVATFEA-----MQSAIDSYSGSGGLVLNY--TGKFDFGTIKDVCAQWKLPAKTVQIKNKSD   73 (330)
T ss_dssp             CCCSTTTTCCTTTTSCCEEECSHHH-----HHHHHHHSCSSSCEEEEE--CCBCCGGGCCCGGGSTTSCCCEEEEESCCS
T ss_pred             CCceeecCCCCCCCceEEEcCCHHH-----HHHHHhccCCCCCEEEEE--ccEEecccccccccccccccceeEEEcCCC
Confidence            5899999999999999999999997     9999985   89999996  89999985               7888999


Q ss_pred             cceeecccceEEeCCcEEEe-eeccEEEeeeEEeCCCC-CCCCceEecC----CCceEEEEceeeecCC-----------
Q 017111          132 KTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG-PDVDAIQIKP----KSKHIWIDRCSLRDYD-----------  194 (377)
Q Consensus       132 ~TI~G~G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g~~-~~~DaI~i~~----~s~nVwIDHcs~s~~~-----------  194 (377)
                      |||+|+  +++|.|.+|+|+ +++|||||||+|+.+.. ++.|+|+|+.    .++|||||||+|+|..           
T Consensus        74 ~TI~G~--~a~i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~  151 (330)
T 2qy1_A           74 VTIKGA--NGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASF  151 (330)
T ss_dssp             EEEEEC--TTCBBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSS
T ss_pred             eEEECC--CcEEeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCccee
Confidence            999886  567999999998 89999999999998764 4789999974    5999999999999876           


Q ss_pred             CCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCcccee
Q 017111          195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAV  274 (377)
Q Consensus       195 Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai  274 (377)
                      ||+||+++++++||||||+|.+|+|++|||++|+...|+.++||||||||+++.+|+||+|+|++|++||||++|..|++
T Consensus       152 Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~i  231 (330)
T 2qy1_A          152 DGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGI  231 (330)
T ss_dssp             CCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGCEEEEESCEEEEEEECTTEEESSEEEEESCEEEEECSCSE
T ss_pred             ecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCceEEEECcEEcCCCCCCCceecceEEEEeeEEEcccceEe
Confidence            99999999999999999999999999999999887666678999999999999999999999999999999999999999


Q ss_pred             eecCCceEEEEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeec--cccccccc--------ccCCcccccCC
Q 017111          275 CASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSL--KLKAGLMA--------EAGEHNMFHPS  344 (377)
Q Consensus       275 ~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~n--g~~~~~~~--------~~~~~~~~~P~  344 (377)
                      ++++++++++|+|||++++.+...+         .++..|+|..++| |++  +.......        ...+...|.|+
T Consensus       232 ~~~~~~~i~~e~N~F~~~~~p~~~~---------~~~~~g~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (330)
T 2qy1_A          232 NVRMGGIAKIESNYFENIKNPVTSR---------DSSEIGYWDLINN-YVGSGITWGTPDGSKPYANATNWISTKVFPES  301 (330)
T ss_dssp             EEETTCEEEEESCEEEEEESSEEEC---------SSSSBCEEEEESC-EECSCEECCCCSSSSCCEECTTCCCSSCCCSC
T ss_pred             ccCCCcEEEEEccEEECCCCceeec---------cCCCceeEEEeCC-cccccccccccCcccccccccccCcccccccC
Confidence            9999999999999999986653321         1245688988888 877  42211000        01123457655


Q ss_pred             CCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          345 EHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       345 ~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      +.|+ |++++|+ +|+++|++.||++-
T Consensus       302 ~~Y~-y~~~~a~-~V~~~V~~~AGag~  326 (330)
T 2qy1_A          302 LGYI-YTVTPAA-QVKAKVIATAGAGK  326 (330)
T ss_dssp             CCSC-CCCCCGG-GHHHHHHHHCSTTS
T ss_pred             CCce-eeeCCHH-HHHHhhHhccCCCc
Confidence            5564 8999996 89999999999863

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=100.00  E-value=5.9e-65  Score=506.57  Aligned_cols=279  Identities=25%  Similarity=0.413  Sum_probs=230.3

Q ss_pred             CcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhh-hcCCCeEEEEEeceEEEecc--------------eeEe
Q 017111           70 QAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGC-RMKEPLWIVFEVSGTIHLRS--------------HLSV  128 (377)
Q Consensus        70 ~a~Gfg~---~ttGG~gG---~vv~VT~l~dsg~GSLr~Ai-~~~~Pr~IVf~vsG~I~l~~--------------~l~V  128 (377)
                      .++|||+   +||||++|   +||+||||+|     ||+|| ++++||+|+  |+|+|++..              +|+|
T Consensus        13 ~~~Gfa~~~~gtTGG~~g~~~~v~~Vtt~~d-----L~~al~~~~~p~vI~--V~GtI~~~~~~~~~s~~~~~~~~~l~v   85 (361)
T 1pe9_A           13 PTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKIIQ--IKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEEE--ECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             CCCceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhcCCCcEEEE--ECCEEecCCccccccccccccceeEEe
Confidence            4899994   89999998   7899999999     99999 899999765  899999974              7889


Q ss_pred             ccCcceeecccceEEeCCcEEE---eeeccEEEeeeEEeCCCC------------CCCCceEecCC-CceEEEEceeeec
Q 017111          129 SSYKTIDGRGQRVKLTGKGLRL---KECEHVIICNLEFEGGKG------------PDVDAIQIKPK-SKHIWIDRCSLRD  192 (377)
Q Consensus       129 ~sn~TI~G~G~g~~I~G~gl~i---~~a~NVIIRnL~ir~g~~------------~~~DaI~i~~~-s~nVwIDHcs~s~  192 (377)
                      .|||||+|+|.+++|.|.+|+|   ++++|||||||+|+.+..            .+.|+|+|+ + ++|||||||+|+|
T Consensus        86 ~snkTI~G~G~~~~i~g~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~-~~s~nVWIDHcs~s~  164 (361)
T 1pe9_A           86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNIT-NGAHHVWIDHVTISD  164 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEE-TTCEEEEEESCEEEC
T ss_pred             cCCcEEEccCCCeEEecCEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEee-cCCceEEEEccEeec
Confidence            9999999999999999999999   789999999999997531            458999998 6 9999999999999


Q ss_pred             C-----------------CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCC-CC-cceeEEEecceecCCCCCCCc
Q 017111          193 Y-----------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV-AD-RCIRVTIHHCFFDGTRQRHPR  253 (377)
Q Consensus       193 ~-----------------~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~-~d-~~~~VT~hhNlf~~~~~R~Pr  253 (377)
                      +                 .||+||+++++++||||||+|++|+|+||||++|+.. .| +.++||||||||+++.+|+||
T Consensus       165 ~~~~~~~~~~~~G~~~~~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr  244 (361)
T 1pe9_A          165 GNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPR  244 (361)
T ss_dssp             TTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSE
T ss_pred             ccccccccccccCcceeeccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcCccccCcc
Confidence            6                 6999999999999999999999999999999998754 44 358999999999999999999


Q ss_pred             cccCeeEEEcceEEc---Cc----cceeeecCCceEEEEceeEecCCcc-----ceeeeeccccCCcccCCCce-EEecC
Q 017111          254 VRYAKVHLYNNYTRN---WG----IYAVCASVDSQIYSQCNIYEAGQKK-----MAFKYLTEKASDKEEARTDC-IRSEG  320 (377)
Q Consensus       254 ~r~G~~hv~NN~~~n---~~----~~ai~~~~~a~v~~e~N~F~~g~~~-----~~~~~~~~~~~~~~~~~~G~-~~~~g  320 (377)
                      +|+|++|+|||||++   |+    .|++++++++++++|+|||++++.+     .++..           ..|. +...+
T Consensus       245 ~R~G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~~-----------~~~~~~~~~g  313 (361)
T 1pe9_A          245 VRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKK-----------FNGSIFSDNG  313 (361)
T ss_dssp             ESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEE-----------SSCCEEEEES
T ss_pred             cccceEEEEcceEecccCCCccccceEecCCCCcEEEEECCEEECCCCccccCceeEEe-----------cCCcEEEecC
Confidence            999999999999974   44    6899999999999999999998422     11111           1222 34445


Q ss_pred             CeeecccccccccccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          321 DLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       321 n~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      + +++|+...... .+ ...|.|...| .|+++.+.++|+++|+++||++-
T Consensus       314 n-~~~g~~~~~~~-~g-~~~~~~~~~y-~y~~~~~a~~V~~~V~~~AGag~  360 (361)
T 1pe9_A          314 S-VLNGSAVDLSG-CG-FSAYTSKIPY-IYDVQPMTTELAQSITDNAGSGK  360 (361)
T ss_dssp             C-EETTEECCCTT-SS-CBCCCSCCCS-CCCCCCCCHHHHHHHHHHCSTTC
T ss_pred             c-cccCcCcccCC-CC-ccccccCCCC-ccccCCcHHHHHHHHHhccCCCc
Confidence            5 55665432211 11 2457666545 47665433589999999999863

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=100.00  E-value=3.1e-64  Score=500.66  Aligned_cols=291  Identities=25%  Similarity=0.382  Sum_probs=231.4

Q ss_pred             cCCcccccC---CCCCCCCCc-eEEecCCCCCCChhHHHhh--hcCCCeEEEEEeceEEEecc--------------eeE
Q 017111           68 AGQAEGFGR---LAIGGLHGP-LYHVTTLADDGPGSLREGC--RMKEPLWIVFEVSGTIHLRS--------------HLS  127 (377)
Q Consensus        68 a~~a~Gfg~---~ttGG~gG~-vv~VT~l~dsg~GSLr~Ai--~~~~Pr~IVf~vsG~I~l~~--------------~l~  127 (377)
                      ..+++|||+   +||||++|+ +|+||||+|     ||+||  ++++||+|  .|+|+|++.+              +|+
T Consensus         5 ~~~~~G~a~~~~gtTGG~~g~~v~~Vtt~~~-----L~~al~~~~~~p~VI--~V~GtI~~~~~~~~~s~~~~~~~~~l~   77 (355)
T 1pcl_A            5 DAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKII--KVTGPIDISGGKAYTSFDDQKARSQIS   77 (355)
T ss_pred             ccCCcceeecCCCCccCCCCceEEEeCCHHH-----HHHHHhhCCCCcEEE--EECCEEecCCccccccccccccceeEE
Confidence            346899998   799999997 799999999     99999  77899954  5999999974              688


Q ss_pred             eccCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC------------CCCCCceEecCCCceEEEEceeeecC--
Q 017111          128 VSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK------------GPDVDAIQIKPKSKHIWIDRCSLRDY--  193 (377)
Q Consensus       128 V~sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~------------~~~~DaI~i~~~s~nVwIDHcs~s~~--  193 (377)
                      |.|||||+|+|.+++|.|.+|+|++++|||||||+|+.+.            ..+.|+|+|+ +++|||||||+|+|+  
T Consensus        78 v~sn~TI~G~G~~~~i~g~gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~-~s~nVWIDH~s~s~~~~  156 (355)
T 1pcl_A           78 IPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSF  156 (355)
T ss_pred             eCCCeEEEEecCCeEEecCEEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEec-CCCcEEEEeeEEecccc
Confidence            9999999999999999999999999999999999999752            1458999997 899999999999996  


Q ss_pred             ---------------CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCC-CCc-ceeEEEecceecCCCCCCCcccc
Q 017111          194 ---------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV-ADR-CIRVTIHHCFFDGTRQRHPRVRY  256 (377)
Q Consensus       194 ---------------~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~-~d~-~~~VT~hhNlf~~~~~R~Pr~r~  256 (377)
                                     .||+||+++++++||||||+|.+|+|+||||++|+.. .|+ .++||||||||+++.+|+||+|+
T Consensus       157 ~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~  236 (355)
T 1pcl_A          157 TDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF  236 (355)
T ss_pred             CccccccccCccccccccceeeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec
Confidence                           6999999999999999999999999999999998754 564 58999999999999999999999


Q ss_pred             CeeEEEcceEEcC---c----cceeeecCCceEEEEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeeccccc
Q 017111          257 AKVHLYNNYTRNW---G----IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKA  329 (377)
Q Consensus       257 G~~hv~NN~~~n~---~----~~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~  329 (377)
                      |++|++||||+++   +    .|++++++++++++|+|||+++..+.+.....  ....-+...|......+.+++|...
T Consensus       237 G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gn~~~g~~~  314 (355)
T 1pcl_A          237 GSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNP--ECSIVKQFNSKVFSDKGSLVNGSTT  314 (355)
T ss_pred             ceEEEEcceEEcccCCCccccceEecCCCCcEEEEEccEEECCCccccccccc--cccccccccCceEEecCccccCcCc
Confidence            9999999999754   4    68899999999999999999984322211100  0000011222211344556677554


Q ss_pred             ccccccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCC
Q 017111          330 GLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQ  370 (377)
Q Consensus       330 ~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~  370 (377)
                      .... .....+|.+...| .|+++.++++|+++|+.+||+.
T Consensus       315 ~~~~-~~~~~~~~~~~~y-~y~~~~~a~~v~~~V~~~AGag  353 (355)
T 1pcl_A          315 TKLD-TCGLTAYKPTLPY-KYSAQTMTSSLATSINNNAGYG  353 (355)
T ss_pred             cccc-cCCccccccCCCC-CccCCCcHHHHHHHHHhccCCC
Confidence            1111 1112456665445 4766554469999999999986

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=100.00  E-value=9.2e-64  Score=505.85  Aligned_cols=288  Identities=32%  Similarity=0.489  Sum_probs=236.4

Q ss_pred             ccccccCCcccccC---CCCCCCCCc---eEEecCCCCCCChhHHHhhhc--------CCCeEEEEEeceEEEecc----
Q 017111           63 SLRALAGQAEGFGR---LAIGGLHGP---LYHVTTLADDGPGSLREGCRM--------KEPLWIVFEVSGTIHLRS----  124 (377)
Q Consensus        63 ~~~~~a~~a~Gfg~---~ttGG~gG~---vv~VT~l~dsg~GSLr~Ai~~--------~~Pr~IVf~vsG~I~l~~----  124 (377)
                      .++.|+ +|+|||+   +||||++|+   ||+|||++|     |++||++        ++||+|+  |+|+|++.+    
T Consensus         4 ~~~~~~-~~~GfA~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~~~~~~priI~--V~GtId~~~~~~g   75 (416)
T 1vbl_A            4 GHEVLK-PYDGWAAYGEGTTGGAMASPQNVFVVTNRTE-----LIQALGGNNHTNQYNSVPKIIY--VKGTIDLNVDDNN   75 (416)
T ss_dssp             GGCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHTTSCTTGGGGCCSCEEEE--ECSEEESSBCTTS
T ss_pred             cccccC-CCcceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhccccccccCCCCEEEE--ECCEEecccCCCC
Confidence            456666 7999999   999999995   899999999     9999985        4899988  899999752    


Q ss_pred             ---------------------------------------------------eeEeccCcceeecccceEEeCCcEEEeee
Q 017111          125 ---------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLKEC  153 (377)
Q Consensus       125 ---------------------------------------------------~l~V~sn~TI~G~G~g~~I~G~gl~i~~a  153 (377)
                                                                         +|+|.|||||+|+|.+++|.|.+|+|+++
T Consensus        76 ~~~~c~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~~  155 (416)
T 1vbl_A           76 QPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIKNV  155 (416)
T ss_dssp             CBCCHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEECTTCCEEESCEEEEESC
T ss_pred             ccccccccccCCcchhhhhhhhCccccccccCCCCcccccccccccccceeEEEeCCCeeEEecCCCeEEecCEEEeecC
Confidence                                                               57889999999999999999999999999


Q ss_pred             ccEEEeeeEEeCCCC----------------CCCCceEecCCCceEEEEceeeecC-----------------CCCceEe
Q 017111          154 EHVIICNLEFEGGKG----------------PDVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLIDI  200 (377)
Q Consensus       154 ~NVIIRnL~ir~g~~----------------~~~DaI~i~~~s~nVwIDHcs~s~~-----------------~Dglidi  200 (377)
                      +|||||||+|+.+..                .+.|+|+|. +++|||||||+|+|+                 .||+||+
T Consensus       156 ~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~Di  234 (416)
T 1vbl_A          156 DNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDI  234 (416)
T ss_dssp             EEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEE
T ss_pred             ceEEEeCeEEEcCccccccccccccccccccCCCceEEec-CCceEEEEccEEecCCCcccccccccCcceeecccceee
Confidence            999999999997531                357999997 899999999999996                 5999999


Q ss_pred             eeCCceEEEeCceecCCCceeEecCCCCCCCCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEEcCc------cce
Q 017111          201 TRESTDITVSRCHFSSHDKTMLIGADPSHVADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG------IYA  273 (377)
Q Consensus       201 ~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~-~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~------~~a  273 (377)
                      ++++++||||||+|.+|+|+||||++|+...|+ .++||||||||+++.+|+||+|+|++|+|||||+++.      .|+
T Consensus       235 ~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~ya  314 (416)
T 1vbl_A          235 KNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYA  314 (416)
T ss_dssp             ESSCEEEEEESCEEEEEEECCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEEECTTSSSCCCCS
T ss_pred             ecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCCceEEEEECcEecCCccCCcccccceEEEEcceEECCCCCcccceeE
Confidence            999999999999999999999999998776665 4899999999999999999999999999999999753      389


Q ss_pred             eeecCCceEEEEceeEecCCc---cceeeeeccccCCcccCCCceEEecCCeee--cc-cccccc-------c-ccCCcc
Q 017111          274 VCASVDSQIYSQCNIYEAGQK---KMAFKYLTEKASDKEEARTDCIRSEGDLSS--LK-LKAGLM-------A-EAGEHN  339 (377)
Q Consensus       274 i~~~~~a~v~~e~N~F~~g~~---~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~--ng-~~~~~~-------~-~~~~~~  339 (377)
                      ++++++++|++|+|||+.++.   +.+...+.        .....+...++.|.  +| ....+.       . ...+..
T Consensus       315 ~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~~--------~~~~~~~~~gn~~~~~ng~~~~d~~~~~n~~~~~~~~~~~  386 (416)
T 1vbl_A          315 WGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWS--------KNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEV  386 (416)
T ss_dssp             EEEETTCEEEEESCEEEESSCCCGGGSEEEEC--------SSCCEEEEESCEEEETTEEEECCHHHHHHHHCSSCCEECC
T ss_pred             eccCCCcEEEEECCEEECCCCCCccceeeeec--------cCCceEEecCCEEeecCCCcccccccccccCCcccccCCc
Confidence            999999999999999999853   11222221        12224556777775  34 211110       0 011234


Q ss_pred             cccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          340 MFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       340 ~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      .|.|+  | .|++++|+ +|+.+|+++||++-
T Consensus       387 ~~~P~--~-~y~~~~a~-~V~~~V~~~AGag~  414 (416)
T 1vbl_A          387 TWKPM--F-YHVIHPTP-SVPALVKAKAGAGN  414 (416)
T ss_dssp             SCCCC--C-CSCCCCGG-GHHHHHHHHCSTTC
T ss_pred             ccCCc--c-ccccCCHH-HHHHHHhhccCCCc
Confidence            56665  3 27999996 89999999999864

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=100.00  E-value=1.8e-63  Score=501.61  Aligned_cols=287  Identities=27%  Similarity=0.452  Sum_probs=234.9

Q ss_pred             ccccccccCCcccccC---CCCCCCCCc---eEEecCCCCCCChhHHHhh---hcCCCeEEEEEeceEEEecc-------
Q 017111           61 DCSLRALAGQAEGFGR---LAIGGLHGP---LYHVTTLADDGPGSLREGC---RMKEPLWIVFEVSGTIHLRS-------  124 (377)
Q Consensus        61 d~~~~~~a~~a~Gfg~---~ttGG~gG~---vv~VT~l~dsg~GSLr~Ai---~~~~Pr~IVf~vsG~I~l~~-------  124 (377)
                      |-.++.|+ +|+|||+   +||||++|+   ||+|||++|     |++||   ++++||+|+  |+|+|++.+       
T Consensus         2 ~~~~~~~~-~a~Gfa~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~priI~--v~GtId~~~~~~g~~~   73 (399)
T 2o04_A            2 DLGHQTLG-SNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPL   73 (399)
T ss_dssp             CTTTCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBC
T ss_pred             CccccccC-CCcceeecCCCCcCCCCCccceEEEeCCHHH-----HHHHHHhccCCCCEEEE--EcCEEecccCCccccc
Confidence            34456666 7999999   899999996   899999999     99999   789999988  899999741       


Q ss_pred             ------------------------------------------------eeEeccCcceeecccceEEeCCcEEEeeeccE
Q 017111          125 ------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLKECEHV  156 (377)
Q Consensus       125 ------------------------------------------------~l~V~sn~TI~G~G~g~~I~G~gl~i~~a~NV  156 (377)
                                                                      +|+|.|||||+|+|.+++|.|.+|+|+. +||
T Consensus        74 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~-~NV  152 (399)
T 2o04_A           74 GLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNV  152 (399)
T ss_dssp             CHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEESSSCCEEESCEEEECS-EEE
T ss_pred             cccccccCCcchhhhhhcccccccccccCCCcccccccccccccccceEEEeCCCceEEeccCCeEEeeCEEEeeC-CCE
Confidence                                                            5788999999999999999999999997 999


Q ss_pred             EEeeeEEeCCC----------------CCCCCceEecCCCceEEEEceeeecC-----------------CCCceEeeeC
Q 017111          157 IICNLEFEGGK----------------GPDVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLIDITRE  203 (377)
Q Consensus       157 IIRnL~ir~g~----------------~~~~DaI~i~~~s~nVwIDHcs~s~~-----------------~Dglidi~~~  203 (377)
                      |||||+|+.+.                ..+.|+|+|. +++|||||||+|+|+                 .||+||++++
T Consensus       153 IIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~  231 (399)
T 2o04_A          153 IIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNG  231 (399)
T ss_dssp             EEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETT
T ss_pred             EEeCeEEecCccccccccccccccccccCCCCeEEec-CCCcEEEEeeeeecCCCccccccccccceeeccccceeeecc
Confidence            99999999753                1357999997 899999999999996                 5999999999


Q ss_pred             CceEEEeCceecCCCceeEecCCCCCCCCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEEcCc-------cceee
Q 017111          204 STDITVSRCHFSSHDKTMLIGADPSHVADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG-------IYAVC  275 (377)
Q Consensus       204 s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~-~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~-------~~ai~  275 (377)
                      +++||||||+|.+|+|+||||++|+...|+ .++||||||||+++.+|+||+|+|++|+|||||++|.       .|+++
T Consensus       232 s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~vT~h~N~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~~ya~g  311 (399)
T 2o04_A          232 ANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWG  311 (399)
T ss_dssp             CEEEEEESCEEEEEEECCEESCCTTCGGGTTCCCEEEESCEEEEEEECTTEESSCEEEEESCEEECCTTCSSSCCCCSEE
T ss_pred             CCcEEEEeeEEcCCCceeEeCCCCCCccccCceeEEEECcEecCCcccCCCcccceEEEEcceEECCCCCCccceeeEec
Confidence            999999999999999999999998776665 5899999999999999999999999999999999874       38999


Q ss_pred             ecCCceEEEEceeEecCCcc--ceeeeeccccCCcccCCCceEEecCCeeeccccccccc--ccCCcccccCCCCCCccc
Q 017111          276 ASVDSQIYSQCNIYEAGQKK--MAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMA--EAGEHNMFHPSEHYYTWT  351 (377)
Q Consensus       276 ~~~~a~v~~e~N~F~~g~~~--~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~--~~~~~~~~~P~~~y~~yt  351 (377)
                      +++++++++|+|||+++..+  .++..+.         ....+...++.+. |....+..  .......|.|+.   .|+
T Consensus       312 ~~~~~~i~~e~N~F~~~~~~~~~~~~~~s---------~~~~~~~~gn~~~-g~~~d~~~~~~~~~~~~~~p~~---~y~  378 (399)
T 2o04_A          312 IGKSSKIYAQNNVIDVPGLSAAKTISVFS---------GGTALYDSGTLLN-GTQINASAANGLSSSVGWTPSL---HGS  378 (399)
T ss_dssp             ECTTCEEEEESCEEECTTCCSGGGEEECT---------TCCBCEEESCEET-TEECCHHHHTTCBSCCSCCCCC---CCC
T ss_pred             cCCCcEEEEEceEEECCCCCccceeeecc---------CCceEEEeCceec-CcccccccccccCCCcccCCcc---ccc
Confidence            99999999999999997322  2222221         1111234555443 43222111  112334566763   268


Q ss_pred             ccchHHHHHHHHHhCcCCCc
Q 017111          352 VAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       352 ~~~As~avk~vv~~~AG~~~  371 (377)
                      +++|+ +|+.+|.++||++-
T Consensus       379 ~~~a~-~V~~~V~~~AGag~  397 (399)
T 2o04_A          379 IDASA-NVKSNVINQAGAGK  397 (399)
T ss_dssp             CCCHH-HHHHHHHHHCSTTS
T ss_pred             cCCHH-HHHHhHHhcCCCCc
Confidence            89885 89999999999864

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=100.00  E-value=2.1e-60  Score=473.84  Aligned_cols=284  Identities=18%  Similarity=0.190  Sum_probs=226.8

Q ss_pred             cccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec----------------------
Q 017111           66 ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR----------------------  123 (377)
Q Consensus        66 ~~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~----------------------  123 (377)
                      +++++|||||++||||++|++|+||+++|     ||+||++++||||+|  +|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~~g~~~~Vtt~~d-----L~~al~~~~prvIvv--~gti~~~~~~G~~t~~~c~~~~~~~~~~~   74 (359)
T 1idk_A            2 GVSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTASACQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CCCCCCccccCCCCCCCCceEEecCCHHH-----HHHHHcCCCceEEEE--CCEEEeccccCcccccccccccccccccc
Confidence            46789999999999999999999999999     999999999999995  8999974                      


Q ss_pred             ---------------------------ceeEeccCcceeecccceEEeCCcEEEe-eeccEEEeeeEEeCCCC---CCCC
Q 017111          124 ---------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG---PDVD  172 (377)
Q Consensus       124 ---------------------------~~l~V~sn~TI~G~G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g~~---~~~D  172 (377)
                                                 .+|+|.|||||+|+|.+++|.|.+|+|+ +++|||||||+||.+..   ++.|
T Consensus        75 ~~~~~~w~~~~~~~~~~~~~t~~~~~~~~l~v~snkTI~G~G~~~~i~G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~D  154 (359)
T 1idk_A           75 AIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCC
T ss_pred             ccccccccccccccCccccccccccccceEEeCCCceEEEecCCeEEecceEEEecCCCcEEEeCeEEEcccccccccCC
Confidence                                       3589999999999999999999999998 89999999999998643   5689


Q ss_pred             ceEecCCCceEEEEceeeecCCCCceEe-eeCCceEEEeCceecCC------------CceeEecCCCCCCCCcceeEEE
Q 017111          173 AIQIKPKSKHIWIDRCSLRDYDDGLIDI-TRESTDITVSRCHFSSH------------DKTMLIGADPSHVADRCIRVTI  239 (377)
Q Consensus       173 aI~i~~~s~nVwIDHcs~s~~~Dglidi-~~~s~~vTIS~n~f~~h------------~k~~LiG~~d~~~~d~~~~VT~  239 (377)
                      +|.|+ ++++||||||+|+|..|++++. ++++++||||||+|.+|            +|++|+|++|        +|||
T Consensus       155 aI~i~-~s~nVwIDHcs~s~~~d~~~~~g~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd--------~vT~  225 (359)
T 1idk_A          155 AITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDAD--------LVTM  225 (359)
T ss_dssp             SEEEC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSC--------EEEE
T ss_pred             ceeec-CCCcEEEEeeEeecCCCCcEEecccCcceEEEECcEecCCcccccccCccccceEEEEecCC--------CeEE
Confidence            99997 7999999999999999999987 67899999999999743            3799999865        8999


Q ss_pred             ecceecCCCCCCCccccC-eeEEEcceEEcCccceeeecCCceEEEEceeEecCCccceee----eeccccCCcc--cCC
Q 017111          240 HHCFFDGTRQRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFK----YLTEKASDKE--EAR  312 (377)
Q Consensus       240 hhNlf~~~~~R~Pr~r~G-~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~~~----~~~~~~~~~~--~~~  312 (377)
                      |||||+++.+|+||+|+| ++|++||||++|..|++.+++++++++|+|||++++.+....    +....+....  ++.
T Consensus       226 hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~G~~~~~~~~~~~~~c~~~  305 (359)
T 1idk_A          226 KGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTY  305 (359)
T ss_dssp             ESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHH
T ss_pred             EceEeecCcccCccccCCceEEEECCEEecccceEEeccCCcEEEEEccEEECCCCceecCCCCEEeecCcccchhhhhc
Confidence            999999999999999998 599999999999999999999999999999999986553210    0000000000  011


Q ss_pred             CceEEecCCeeecccccccccccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          313 TDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       313 ~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      .|++. ..|.|.+....  .. . ....++++..|+.|++++|+ +|+..|...||+.-
T Consensus       306 lg~~~-~~N~~~~sg~~--~~-~-~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~g~  358 (359)
T 1idk_A          306 LGRDC-VINGFGSSGTF--SE-D-STSFLSDFEGKNIASASAYT-SVASRVVANAGQGN  358 (359)
T ss_dssp             HSSCC-CCCEEESSCCC--CC-B-CCTTGGGGTTSCCCCCCCGG-GHHHHHHHHCSTTC
T ss_pred             cCcce-eecccccCCcc--cc-C-CcccccccCCccccccCCHH-HhhhhhhccCCCcc
Confidence            12222 23555432111  01 1 11223343334457999996 79999999999863

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=100.00  E-value=2.5e-59  Score=466.22  Aligned_cols=282  Identities=21%  Similarity=0.222  Sum_probs=221.9

Q ss_pred             cccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec----------------------
Q 017111           66 ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR----------------------  123 (377)
Q Consensus        66 ~~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~----------------------  123 (377)
                      ++.++|||||++||||++|++++||||+|     ||+||++++||+||  |+|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~gg~~v~Vtt~~~-----L~~al~~~~prvIv--v~gtid~~g~~g~~~~~~c~~~~~~~~~~~   74 (359)
T 1qcx_A            2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVII--LDQTFDFTGTEGTETTTGCAPWGTASQCQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEE--ECSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CcCCCcceeecCCcCCCCcceEEeCCHHH-----HHHHHcCCCCeEEE--ECcEEeeccccccccccccccccccccccc
Confidence            35688999999999999999999999999     99999999999999  35555531                      


Q ss_pred             ---------------------------ceeEeccCcceeecccceEEeCCcEEEe-eeccEEEeeeEEeCCCC---CCCC
Q 017111          124 ---------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG---PDVD  172 (377)
Q Consensus       124 ---------------------------~~l~V~sn~TI~G~G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g~~---~~~D  172 (377)
                                                 ..|.|.|||||+|+|.+++|.|.+|+|+ +++|||||||+||.+..   +++|
T Consensus        75 ~i~~~~~~~~~~~~~p~~ti~~~~a~~~~i~v~snkTI~G~g~~~~I~G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~D  154 (359)
T 1qcx_A           75 AINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCC
T ss_pred             eecccccccccccCCccceeeecccccceEEeCCCceEEecCCceEEecceEEEecCCCCEEEeCcEEEecCCcccccCc
Confidence                                       2588899999999999999999999998 89999999999998753   5689


Q ss_pred             ceEecCCCceEEEEceeeecCCCCceE-eeeCCceEEEeCceecC-----------C-CceeEecCCCCCCCCcceeEEE
Q 017111          173 AIQIKPKSKHIWIDRCSLRDYDDGLID-ITRESTDITVSRCHFSS-----------H-DKTMLIGADPSHVADRCIRVTI  239 (377)
Q Consensus       173 aI~i~~~s~nVwIDHcs~s~~~Dglid-i~~~s~~vTIS~n~f~~-----------h-~k~~LiG~~d~~~~d~~~~VT~  239 (377)
                      +|.|+ ++++||||||+|+|..||+++ .++++++||||||+|.+           | +++||+|++|        +|||
T Consensus       155 aI~i~-~s~nvwIDHcs~s~~~d~~~~~~~~~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd--------~vT~  225 (359)
T 1qcx_A          155 AITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSND--------MVTL  225 (359)
T ss_dssp             SEEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSE--------EEEE
T ss_pred             eeEec-CCceEEEEeeEeeccCcCceeecccccccEEEECcEecCCccccccCcccccceeEEecCCC--------Ceeh
Confidence            99998 799999999999999999984 56789999999999973           5 5789999764        7999


Q ss_pred             ecceecCCCCCCCccccC-eeEEEcceEEcCccceeeecCCceEEEEceeEecCCccceeeeecccc-CCcc-------c
Q 017111          240 HHCFFDGTRQRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKA-SDKE-------E  310 (377)
Q Consensus       240 hhNlf~~~~~R~Pr~r~G-~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~-~~~~-------~  310 (377)
                      |||||.++.+|+||+|++ ++|++||||++|..|++++++++++++|+|||++++.+..... .... ...+       +
T Consensus       226 ~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~a~~~~~~~~i~~e~N~F~~~~~~~~~~~-~g~~f~~~~~~~~~~c~  304 (359)
T 1qcx_A          226 KGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPI-SGQLFSSPDANTNQQCA  304 (359)
T ss_dssp             ESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSC-SSEEECCCSHHHHGGGH
T ss_pred             cccEeccCcccCceecCCceEEEEccEEECccCeEEecCCCceEEEEeeEEECCCcccCcCC-CCceeecccccccchhh
Confidence            999999999999999986 6999999999999999999999999999999999876532100 0000 0000       0


Q ss_pred             CCCceEEecCCeeecccccccccccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCC
Q 017111          311 ARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQ  370 (377)
Q Consensus       311 ~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~  370 (377)
                      ...|++. ..|.|.+....   . ......+.++..|+.|++++|+ +|++.|...||+.
T Consensus       305 ~~lgr~~-~~N~~~~sg~~---~-~~~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~g  358 (359)
T 1qcx_A          305 SVFGRSC-QLNAFGNSGSM---S-GSDTSIISKFAGKTIAAAHPPG-AIAQWTMKNAGQG  358 (359)
T ss_dssp             HHHSSCC-CCCEEESCCCC---C-CBCGGGGGGGTTSCCCCCCCGG-GHHHHHHHHSSTT
T ss_pred             hccCccc-cccccccCCcc---c-CCCcccccccCCccccccccHH-HhhhhhhccCCCC
Confidence            0011111 13444432111   1 1111234444445457999996 8999999999975

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=100.00  E-value=4.5e-58  Score=456.10  Aligned_cols=279  Identities=19%  Similarity=0.236  Sum_probs=218.9

Q ss_pred             CcccccC---CCCCCCCCceEEecCCCCCCChhHHHhhhc-----------CCCeEEEEEeceEEEec------------
Q 017111           70 QAEGFGR---LAIGGLHGPLYHVTTLADDGPGSLREGCRM-----------KEPLWIVFEVSGTIHLR------------  123 (377)
Q Consensus        70 ~a~Gfg~---~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~-----------~~Pr~IVf~vsG~I~l~------------  123 (377)
                      ..+|||.   +|+||  +.+++|||+++     |++|+++           .+++.+||.|+|+|++.            
T Consensus         3 ~~~G~at~~Ggt~gg--~~~~tvtt~~~-----L~~al~~~~~~~~g~~~~~~~~p~vi~v~GtId~~~~~~~~~~~~~~   75 (353)
T 1air_A            3 DTGGYAATAGGNVTG--AVSKTATSMQD-----IVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQW   75 (353)
T ss_dssp             BCSSSCBCCTTCSTT--CEEEEESSHHH-----HHHHHHHTTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTSGGGST
T ss_pred             CCCcceecCCCCCCC--cceEEeCCHHH-----HHHHHHhhccccccccccCCCceEEEEEccEEecccccccccccccc
Confidence            3678876   23333  46789999997     9999965           34566678899999883            


Q ss_pred             ----ceeEe---ccCcceeecccceEEeCCcEEEeeeccEEEeeeEEeCCCC--CCCCceEecCCCceEEEEceeeecC-
Q 017111          124 ----SHLSV---SSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRDY-  193 (377)
Q Consensus       124 ----~~l~V---~sn~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~~--~~~DaI~i~~~s~nVwIDHcs~s~~-  193 (377)
                          +.|+|   .+||||+|+..  .+.|.+|+|++++|||||||+|+.++.  .+.|+|+|+ +++|||||||+|+|. 
T Consensus        76 ~~~~~~~~i~~~~sn~TI~G~~~--~~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~-~s~nVWIDH~s~s~~~  152 (353)
T 1air_A           76 SKDPRGVEIKEFTKGITIIGANG--SSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAAN  152 (353)
T ss_dssp             TSCCCEEEEESBCSCEEEEECTT--CCBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEE-SCCSEEEESCEEECCS
T ss_pred             ccCCCceEEEecCCCEEEEeccC--CCCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEee-CCCcEEEEeeEEecCC
Confidence                45777   58999999843  366889999999999999999997653  568999997 899999999999985 


Q ss_pred             ------------CCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEE
Q 017111          194 ------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHL  261 (377)
Q Consensus       194 ------------~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv  261 (377)
                                  .||++|+++++++||||||+|.+|+|++|+|++++...   ++||||||||+++.+|+||+|+|++|+
T Consensus       153 ~~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g---~~vT~hhN~f~~~~~R~Pr~r~G~~Hv  229 (353)
T 1air_A          153 HECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTG---RNITYHHNYYNDVNARLPLQRGGLVHA  229 (353)
T ss_dssp             CCCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCC---CEEEEESCEEEEEEECSCEEESSEEEE
T ss_pred             cccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCC---ceEEEEceEEcCCcCCCCCCcCceEEE
Confidence                        39999999999999999999999999999999875332   699999999999999999999999999


Q ss_pred             EcceEEcCccceeeecCCceEEEEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeec--------ccc--cc-
Q 017111          262 YNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSL--------KLK--AG-  330 (377)
Q Consensus       262 ~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~n--------g~~--~~-  330 (377)
                      +||||++|..|++++++++++++|+|||+++..+...++        +.+..|+|+..+|.|.+        ...  .+ 
T Consensus       230 ~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~p~~~~~--------~~~~~g~~~~~~n~~~~~~d~~~~~~~~~s~~~  301 (353)
T 1air_A          230 YNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY--------DGKNFGTWVLKGNNITKPADFSTYSITWTADTK  301 (353)
T ss_dssp             ESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECS--------SSSSCCEEEEESCSCCSTHHHHHHTEECCCCSS
T ss_pred             EccEEECCCCceeccCCCcEEEEEceEEECCCCceEecC--------CCCCCceeEecccccccccccceecccccCCCc
Confidence            999999999999999999999999999999865533211        12346888877776642        110  00 


Q ss_pred             -cccccC-CcccccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          331 -LMAEAG-EHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       331 -~~~~~~-~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                       +..... ...-+.|+..| .|++++|+ +|++.|+++||++-
T Consensus       302 ~~~~~~~~~~~g~~~~~~Y-~y~~~~a~-~V~~~V~~~AGag~  342 (353)
T 1air_A          302 PYVNADSWTSTGTFPTVAY-NYSPVSAQ-CVKDKLPGYAGVGK  342 (353)
T ss_dssp             CCEECTTCCCCSCCCCCCS-CCCCCCHH-HHHHHGGGTSSSSS
T ss_pred             cccccccccccCCccccce-EEecCCHH-HhhhhhhhccCCCc
Confidence             000000 00111133445 48999985 89999999999864

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=98.81  E-value=2e-07  Score=91.56  Aligned_cols=137  Identities=11%  Similarity=0.076  Sum_probs=90.3

Q ss_pred             eeccEEEeeeEEeCCCC---------------------CCCCceEecCCCceEEEEcee-eecCCCCceEeeeCCceEEE
Q 017111          152 ECEHVIICNLEFEGGKG---------------------PDVDAIQIKPKSKHIWIDRCS-LRDYDDGLIDITRESTDITV  209 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~~---------------------~~~DaI~i~~~s~nVwIDHcs-~s~~~Dglidi~~~s~~vTI  209 (377)
                      .++|+.|++++|+....                     ...|||.+. .++++.|.+|. +....|| |++...+++++|
T Consensus       132 ~~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~-~s~~~~i~~N~~~~~~~~G-I~~~~~s~~v~I  209 (377)
T 2pyg_A          132 ADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD-YLVDSVFENNVAYANDRHG-FNVVTSTHDFVM  209 (377)
T ss_dssp             CEEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEE-SEEEEEEESCEEESCSSCS-EEEETTCEEEEE
T ss_pred             cccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEe-ccCCcEEECcEEEccccCc-EEEEeccCCeEE
Confidence            36788888888875421                     224666665 56666677774 3445666 777666899999


Q ss_pred             eCceecCCCceeEe---cCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccceeeecCCceEEEE
Q 017111          210 SRCHFSSHDKTMLI---GADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQ  285 (377)
Q Consensus       210 S~n~f~~h~k~~Li---G~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~~~~~a~v~~e  285 (377)
                      ++|.+.+...+..+   |+...   ....++++.+|.+.++..+-..+.. ..+.+.||.+.+....++.......+.++
T Consensus       210 ~nN~i~~~~~g~~~~~~g~~~~---~~s~nv~i~~N~~~~n~~~Gi~~~~~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~  286 (377)
T 2pyg_A          210 TNNVAYGNGSSGLVVQRGLEDL---ALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQIL  286 (377)
T ss_dssp             ESCEEESCSSCSEEEECCSSCC---CCCEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESCSSCSEEEEEEEEEEEE
T ss_pred             ECCEEECccCceEEEeccccCC---CCCccEEEECCEEEcCccCceEeccccCeEEECCEEECCCCceEEEecCCCcEEE
Confidence            99999876554444   22211   1123789999987766555444432 35789999998875567665555678889


Q ss_pred             ceeEecCC
Q 017111          286 CNIYEAGQ  293 (377)
Q Consensus       286 ~N~F~~g~  293 (377)
                      +|.|....
T Consensus       287 ~N~i~~n~  294 (377)
T 2pyg_A          287 DNQIHDNA  294 (377)
T ss_dssp             SCEEESCC
T ss_pred             CcEEECCc
Confidence            99998643

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=98.77  E-value=2.1e-07  Score=97.89  Aligned_cols=117  Identities=16%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             EEEeeeccEEEeeeEEeCCCC--------CCCCceEecCC------CceEEEEceeeecCCCCceEeeeCCceEEEeCce
Q 017111          148 LRLKECEHVIICNLEFEGGKG--------PDVDAIQIKPK------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~--------~~~DaI~i~~~------s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~  213 (377)
                      |.+..++||.|++|+|+....        ...|+|.++ +      ++||||++|.+....|..|.+ +.+.+|+|++|.
T Consensus       137 I~f~~c~NV~I~gVti~NSp~~gI~I~~~~~NDGid~D-Gi~fd~~S~NV~I~Nc~I~~tGDDcIaI-ksseNI~I~Nc~  214 (609)
T 3gq8_A          137 LSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD-GTTAPNPSENIWIENCEATGFGDDGITT-HHSQYINILNCY  214 (609)
T ss_dssp             EEEESCEEEEEEEEEEESCSSCSEEEECSSSSCCCCCT-TCCCSSCCEEEEEESCEEESCSSCSEEE-CSCEEEEEESCE
T ss_pred             EEEEeeceEEEEeeEEEeCCCCCeEEeCCCCCccccCC-CccccccceeEEEEeeEEEecCCCEEEe-cCCeeEEEEeEE
Confidence            567788999999999987532        112455443 4      899999999998877777999 469999999999


Q ss_pred             ecCC-----CceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc----C---eeEEEcceEE-cCcccee
Q 017111          214 FSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY----A---KVHLYNNYTR-NWGIYAV  274 (377)
Q Consensus       214 f~~h-----~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~----G---~~hv~NN~~~-n~~~~ai  274 (377)
                      +.+.     .-++-||..       ..+|++.+|.|.++. |-=|++.    +   .+++.||+.+ |+..|.+
T Consensus       215 ~~gp~G~S~~~GIsIGsg-------s~NVtV~Nc~i~nt~-~GIrIKt~~~~~~v~NV~I~n~vs~~nvrsyn~  280 (609)
T 3gq8_A          215 SHDPRLTANCNGFEIDDG-------SRHVVLSNNRSKGCY-GGIEIKAHGDAPAAYNISINGHMSVEDVRSYNF  280 (609)
T ss_dssp             EECCSSCSSCCSEEECTT-------CEEEEEESEEEESSS-EEEEEEECTTSCCCEEEEEEEEEEESCSEEEEE
T ss_pred             EECCCCCCCcccEEccCC-------cccEEEEeeEEECCC-CEEEEEecCCCCccccEEEECCEeecCceEecc
Confidence            9543     235555531       248999999998764 4445542    1   4788888654 4444443

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=98.69  E-value=5.4e-08  Score=97.75  Aligned_cols=183  Identities=13%  Similarity=0.174  Sum_probs=122.6

Q ss_pred             CCCeEEEEEeceEEEecceeEeccC-cceeecccceE---Ee------C------Cc--EEEeee---------------
Q 017111          107 KEPLWIVFEVSGTIHLRSHLSVSSY-KTIDGRGQRVK---LT------G------KG--LRLKEC---------------  153 (377)
Q Consensus       107 ~~Pr~IVf~vsG~I~l~~~l~V~sn-~TI~G~G~g~~---I~------G------~g--l~i~~a---------------  153 (377)
                      ..|.-++.-..|+++|+.+|.|... +||.|.+.+.+   |.      |      +|  |++..+               
T Consensus        54 A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~  133 (410)
T 2inu_A           54 ARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDP  133 (410)
T ss_dssp             SCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSS
T ss_pred             CCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCc
Confidence            3466666667899999999999865 99999875654   66      3      22  455443               


Q ss_pred             --ccEEEeeeEEeCCC--------CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCc-eeE
Q 017111          154 --EHVIICNLEFEGGK--------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TML  222 (377)
Q Consensus       154 --~NVIIRnL~ir~g~--------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k-~~L  222 (377)
                        ++|.|++|+|++..        ....-||.+...++++.|.+|.|.+...| |.+ +++++++|.+|.|.+..- .-|
T Consensus       134 r~s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~~fG-I~l-~~a~~~~I~~N~I~e~GNgI~L  211 (410)
T 2inu_A          134 RLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHA-LIV-RGADALRVNDNMIAECGNCVEL  211 (410)
T ss_dssp             CEECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESCSEE-EEE-TTEESCEEESCEEESSSEEEEE
T ss_pred             ccCCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecccEE-EEE-ccCCCcEEECCEEEecCCceee
Confidence              78888888888752        13366888875588889999999999999 788 689999999999995433 347


Q ss_pred             ecCC-CC-----C--CCCcc--eeEEE-ecceecCCCC-CCCccc--c---CeeEEEcceEEcCccceeeecC--CceEE
Q 017111          223 IGAD-PS-----H--VADRC--IRVTI-HHCFFDGTRQ-RHPRVR--Y---AKVHLYNNYTRNWGIYAVCASV--DSQIY  283 (377)
Q Consensus       223 iG~~-d~-----~--~~d~~--~~VT~-hhNlf~~~~~-R~Pr~r--~---G~~hv~NN~~~n~~~~ai~~~~--~a~v~  283 (377)
                      ||.+ .+     .  ...++  +.+.. +++++.++.. +.=|..  +   ....+.+|.+.+.. |++..-.  ....+
T Consensus       212 ~G~~~~~~I~~N~i~~~~dG~gIyl~ns~~~~I~~N~i~~~~R~gIh~m~s~~~~i~~N~f~~~~-~Gi~~M~s~~~~n~  290 (410)
T 2inu_A          212 TGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFY-PGMLRLLNGCKENL  290 (410)
T ss_dssp             CSCEESCEEESCEEECCTTSEEEEEESEESCEEESCEECSCSSEEEEEESCBSCEEESCEEEESS-SCSEEEESSCBSCE
T ss_pred             ccccccceEecceeeecCCCCEEEEEeCCCCEEECCCcccCcceEEEEEccCCCEEECCEEecce-eEEEEEEcCCCCCE
Confidence            7722 21     1  11222  55555 5677777644 323321  1   23578888887653 4443222  23677


Q ss_pred             EEceeEecC
Q 017111          284 SQCNIYEAG  292 (377)
Q Consensus       284 ~e~N~F~~g  292 (377)
                      +++|.|...
T Consensus       291 v~~N~f~~~  299 (410)
T 2inu_A          291 ITANHIRRT  299 (410)
T ss_dssp             EESCEEEEE
T ss_pred             EECCEEecc
Confidence            889998754

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.68  E-value=3.2e-06  Score=85.05  Aligned_cols=203  Identities=9%  Similarity=0.039  Sum_probs=129.4

Q ss_pred             CCceEEec-CCCCCCCh-------hHHHhhhcCCCeEEEEEeceEEE--ec----ceeEec------cCcceeecc-cce
Q 017111           83 HGPLYHVT-TLADDGPG-------SLREGCRMKEPLWIVFEVSGTIH--LR----SHLSVS------SYKTIDGRG-QRV  141 (377)
Q Consensus        83 gG~vv~VT-~l~dsg~G-------SLr~Ai~~~~Pr~IVf~vsG~I~--l~----~~l~V~------sn~TI~G~G-~g~  141 (377)
                      .+++|+|. +-.|+++|       +|++|++...|...|+--.|++.  +.    ..|.+.      ..+||.|.+ ...
T Consensus        13 ~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~g~~~   92 (400)
T 1ru4_A           13 TKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRA   92 (400)
T ss_dssp             CSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCCE
T ss_pred             CccEEEEcCCCCCCCCCccccCCccHHHHHhhCCCCCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEecCCCC
Confidence            34567775 34566666       89999998777666665789998  43    346653      348999984 567


Q ss_pred             EEe-----C------CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEe
Q 017111          142 KLT-----G------KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS  210 (377)
Q Consensus       142 ~I~-----G------~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS  210 (377)
                      +|.     +      .+|.| .++++.|++|+|+...   ..||.+. + .++.|++|.|.+..+.-|.+...+.+.+|.
T Consensus        93 vI~~~~~~g~~~~~~~~i~i-~~~~~~i~gl~I~n~g---~~GI~v~-g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~  166 (400)
T 1ru4_A           93 VFDFSFPDSQWVQASYGFYV-TGDYWYFKGVEVTRAG---YQGAYVI-G-SHNTFENTAFHHNRNTGLEINNGGSYNTVI  166 (400)
T ss_dssp             EEECCCCTTCCCTTCCSEEE-CSSCEEEESEEEESCS---SCSEEEC-S-SSCEEESCEEESCSSCSEEECTTCCSCEEE
T ss_pred             EEeCCccCCccccceeEEEE-ECCeEEEEeEEEEeCC---CCcEEEe-C-CCcEEEeEEEECCCceeEEEEcccCCeEEE
Confidence            775     2      45888 4899999999998643   2389996 4 677899999999988557886555588899


Q ss_pred             CceecCCCc---------ee-EecCC--CCC---------CCC------cceeEEEecceecCCCCC-CC---------c
Q 017111          211 RCHFSSHDK---------TM-LIGAD--PSH---------VAD------RCIRVTIHHCFFDGTRQR-HP---------R  253 (377)
Q Consensus       211 ~n~f~~h~k---------~~-LiG~~--d~~---------~~d------~~~~VT~hhNlf~~~~~R-~P---------r  253 (377)
                      +|.+.+...         ++ ++-..  .+.         ..|      ..-.|+|.+|+..++... -.         -
T Consensus       167 nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnG  246 (400)
T 1ru4_A          167 NSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNG  246 (400)
T ss_dssp             SCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCS
T ss_pred             ceEEEcccCccccCcccceEEEEecccCCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCC
Confidence            998864320         11 11110  000         001      112467888766444321 10         0


Q ss_pred             cccC------eeEEEcceEEcCccceeeecCCc-eEEEEceeEec
Q 017111          254 VRYA------KVHLYNNYTRNWGIYAVCASVDS-QIYSQCNIYEA  291 (377)
Q Consensus       254 ~r~G------~~hv~NN~~~n~~~~ai~~~~~a-~v~~e~N~F~~  291 (377)
                      ++.|      ...|.||+.++...+++...... .+.+++|.+..
T Consensus       247 f~lgg~~~~~~~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~  291 (400)
T 1ru4_A          247 FKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYK  291 (400)
T ss_dssp             EECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEES
T ss_pred             EEEeccCCcCCEEEEeeEEECCcCcCEeecCCCCCEEEECeEEEC
Confidence            1211      35688888887777777765554 36778885443

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.67  E-value=5.2e-07  Score=93.41  Aligned_cols=200  Identities=20%  Similarity=0.232  Sum_probs=121.7

Q ss_pred             eEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEe------ccCcceeecc-cceEEeCCc-EEEeeeccEE
Q 017111           86 LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSV------SSYKTIDGRG-QRVKLTGKG-LRLKECEHVI  157 (377)
Q Consensus        86 vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V------~sn~TI~G~G-~g~~I~G~g-l~i~~a~NVI  157 (377)
                      ++.|.+..     +|++|+++..|...|+--.|+++- ..|.+      ...+||.|.+ .+++|.|.. |.|. +++|.
T Consensus        25 ~i~V~~~~-----~Lq~Ai~~A~pGDtI~L~~GtY~~-~~i~i~~sGt~~~pItl~~~~~~~~vi~G~~~l~i~-g~~v~   97 (506)
T 1dbg_A           25 GQVVASNE-----TLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLI   97 (506)
T ss_dssp             -CEECSHH-----HHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEE
T ss_pred             EEEeCCHH-----HHHHHHHhCCCCCEEEECCCEEec-ceEEEecCCcCCCCEEEECCCCCccEEeCCceEEEE-cCCEE
Confidence            35676543     599999987776666657899862 25666      5679999973 467888764 7775 79999


Q ss_pred             EeeeEEeCCCCC-------CCCceEecCCCceEEEEceeeecCCCCc-eEee-------eCCceEEEeCceecCC-Ccee
Q 017111          158 ICNLEFEGGKGP-------DVDAIQIKPKSKHIWIDRCSLRDYDDGL-IDIT-------RESTDITVSRCHFSSH-DKTM  221 (377)
Q Consensus       158 IRnL~ir~g~~~-------~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-idi~-------~~s~~vTIS~n~f~~h-~k~~  221 (377)
                      |++|+|+++...       +..+|.+.  ++++.|.+|.|....++. +.+.       ..+.+.+|.+|.|.+. ..++
T Consensus        98 i~GL~i~~~~~~~~~~~~~~~~~iav~--G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~  175 (506)
T 1dbg_A           98 LEGIWFKDGNRAIQAWKSHGPGLVAIY--GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQ  175 (506)
T ss_dssp             EESCEEEEECCCTTTCCTTSCCSEEEC--SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSC
T ss_pred             EECeEEECCCcceeeeecccccceEEe--cCCeEEEeeEEEcCCCCceeeEeecccceeeeccccEEECcEEECCcCcce
Confidence            999999976421       12456665  477889999999876651 2222       1345668999999852 3344


Q ss_pred             Ee----cCCCCCCC---CcceeEEEecceecCCCCCCC---ccccC-------eeEEEcceEEcC-ccceeeecCCceEE
Q 017111          222 LI----GADPSHVA---DRCIRVTIHHCFFDGTRQRHP---RVRYA-------KVHLYNNYTRNW-GIYAVCASVDSQIY  283 (377)
Q Consensus       222 Li----G~~d~~~~---d~~~~VT~hhNlf~~~~~R~P---r~r~G-------~~hv~NN~~~n~-~~~ai~~~~~a~v~  283 (377)
                      ++    |-.-....   +......++||+|.+...+.-   -+|+|       ...+.||++++. +.+++.........
T Consensus       176 ~i~gnngI~l~~~~~~~~~~~~~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~  255 (506)
T 1dbg_A          176 VINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENV  255 (506)
T ss_dssp             SEEECSSCCCSCCCSCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCE
T ss_pred             EEecCceeEeccCcccccccCCeEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEE
Confidence            43    11100000   111256788888876421111   13333       457788887754 23454433333345


Q ss_pred             EEceeEecCCc
Q 017111          284 SQCNIYEAGQK  294 (377)
Q Consensus       284 ~e~N~F~~g~~  294 (377)
                      +.+|.|.....
T Consensus       256 i~~N~~~~~~g  266 (506)
T 1dbg_A          256 YYGNTYLNCQG  266 (506)
T ss_dssp             EESCEEESCSS
T ss_pred             EECCEEEcccC
Confidence            56666665433

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.54  E-value=1.6e-06  Score=85.24  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=62.2

Q ss_pred             eeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          152 ECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      .++||.|++++|....     ....|||.+. .+++|+|++|.+....|. |.++. ..+|+|++|.+.... ++.||+-
T Consensus       130 ~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~gh-GisiGSl  205 (339)
T 2iq7_A          130 SATTLGVYDVIIDNSAGDSAGGHNTDAFDVG-SSTGVYISGANVKNQDDC-LAINS-GTNITFTGGTCSGGH-GLSIGSV  205 (339)
T ss_dssp             SCEEEEEESCEEECGGGGGTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESSC-CEEEEEE
T ss_pred             ccCCEEEEEEEEECCccccccCCCCCcEEEc-CcceEEEEecEEecCCCE-EEEcC-CccEEEEeEEEECCc-eEEECcC
Confidence            3444555555554321     2347899986 789999999999876665 88864 589999999998632 6777763


Q ss_pred             CCCCCCcceeEEEecceecCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      .......-.+|++.++.|.++
T Consensus       206 g~~~~~~v~nV~v~n~~~~~~  226 (339)
T 2iq7_A          206 GGRSDNTVKTVTISNSKIVNS  226 (339)
T ss_dssp             SSSSCCEEEEEEEEEEEEESC
T ss_pred             CcccCCCEEEEEEEeeEEECC
Confidence            211222235899999988775

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.40  E-value=2.3e-05  Score=79.22  Aligned_cols=96  Identities=13%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      +|.+..++||.|+|++|..+.....|||.+. . ++|+|.+|.+..+. ..|.++..+.+|+|++|.+.... ++-||+-
T Consensus       152 ~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~-~-~nV~I~n~~i~~gD-D~Iai~s~~~nI~I~n~~~~~~~-GisIGS~  227 (422)
T 1rmg_A          152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNKD-ECVTVKSPANNILVESIYCNWSG-GCAMGSL  227 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESSS-EEEEEEEEEEEEEEEEEEEESSS-EEEEEEE
T ss_pred             EEEEeCcCCEEEEeEEEECCCCCCCccEeec-C-CeEEEEeeEEeCCC-CeEEeCCCCcCEEEEeEEEcCCc-ceeeccc
Confidence            4566667778888888876433357999997 6 99999999998654 45999877899999999987543 7777763


Q ss_pred             CCCCCCcceeEEEecceecCCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~~  248 (377)
                      ...  ..-.+|++.+|.|.++.
T Consensus       228 g~~--~~v~nV~v~n~~~~~~~  247 (422)
T 1rmg_A          228 GAD--TDVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             CTT--EEEEEEEEEEEEEESSS
T ss_pred             CCC--CcEEEEEEEeEEEeccc
Confidence            211  11248999999888753

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.32  E-value=2.3e-05  Score=76.88  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             eeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          152 ECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      .++||.|+|++|....     ....|||.+. .+++|+|++|.++...| .|.++. ..+|+|++|.+... .++-||+-
T Consensus       134 ~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD-cIaiks-g~nI~i~n~~~~~g-hGisiGS~  209 (339)
T 1ia5_A          134 GSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDD-CVAVNS-GENIYFSGGYCSGG-HGLSIGSV  209 (339)
T ss_dssp             SCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSC-SEEESS-EEEEEEESCEEESS-SCEEEEEE
T ss_pred             cccCeEEeeEEEECCccccccCCCCCcEEec-CCceEEEEeeEEEcCCC-eEEEeC-CeEEEEEeEEEECC-ceEEECcC
Confidence            3444455555554321     2347889886 78999999999986655 488864 58999999998853 25777763


Q ss_pred             CCCCCCcceeEEEecceecCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      .......-.+|++.++.|.++
T Consensus       210 g~~~~~~v~nV~v~n~~~~~t  230 (339)
T 1ia5_A          210 GGRSDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             CSSSCCEEEEEEEEEEEEESC
T ss_pred             CcccCCCEEEEEEEeeEEECC
Confidence            221222234888988888774

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.25  E-value=3.4e-05  Score=75.64  Aligned_cols=160  Identities=15%  Similarity=0.221  Sum_probs=99.4

Q ss_pred             eceEEEec-----ce-eEec-cCcceeecccceEEeCCc------------------EEEeeeccEEEeeeEEeCCCCCC
Q 017111          116 VSGTIHLR-----SH-LSVS-SYKTIDGRGQRVKLTGKG------------------LRLKECEHVIICNLEFEGGKGPD  170 (377)
Q Consensus       116 vsG~I~l~-----~~-l~V~-sn~TI~G~G~g~~I~G~g------------------l~i~~a~NVIIRnL~ir~g~~~~  170 (377)
                      .+|++.+.     .+ |.+. +|+||.|.| +.+|.|.|                  |.+..++||.|++|+|+....  
T Consensus        47 ~~g~~~~~~~~w~g~li~~~~~nv~I~G~~-gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp~--  123 (336)
T 1nhc_A           47 FEGTTSFGYKEWKGPLIRFGGKDLTVTMAD-GAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPV--  123 (336)
T ss_dssp             EESEEEECCCCSCCCSEECCEESCEEEECT-TCEEECCGGGTCCSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSS--
T ss_pred             EeceEEcccccccCcEEEEecCCEEEEcCC-CeEEECCccccccccCcCCCCCCceEEEEeeeCcEEEEEEEEEeCCc--
Confidence            45776542     12 3333 788888863 23565543                  677778899999999987543  


Q ss_pred             CCceEecCCCceEEEEceeeec---------CCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEec
Q 017111          171 VDAIQIKPKSKHIWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHH  241 (377)
Q Consensus       171 ~DaI~i~~~s~nVwIDHcs~s~---------~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hh  241 (377)
                       -+|.+.  +++|+|+++++..         ..|| ||+ ..+++|+|++|.|...+-+.-|+++        .+|++.+
T Consensus       124 -~~i~i~--~~nv~i~~~~I~~~~~d~~~~~ntDG-idi-~~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n  190 (336)
T 1nhc_A          124 -QAISVQ--ATNVHLNDFTIDNSDGDDNGGHNTDG-FDI-SESTGVYISGATVKNQDDCIAINSG--------ESISFTG  190 (336)
T ss_dssp             -CCEEEE--EEEEEEESCEEECTTHHHHTCCSCCS-EEE-CSCEEEEEESCEEESSSEEEEESSE--------EEEEEES
T ss_pred             -cEEEEE--eCCEEEEEEEEECCCcccccCCCCCc-EEe-cCCCeEEEEeCEEEcCCCEEEEeCC--------eEEEEEe
Confidence             357774  7888888888864         2677 788 4678888888888776666666543        3678877


Q ss_pred             ceecCCCCCCCcc------ccC---eeEEEcceEEcCccceee--ecCC-----ceEEEEceeEecCCc
Q 017111          242 CFFDGTRQRHPRV------RYA---KVHLYNNYTRNWGIYAVC--ASVD-----SQIYSQCNIYEAGQK  294 (377)
Q Consensus       242 Nlf~~~~~R~Pr~------r~G---~~hv~NN~~~n~~~~ai~--~~~~-----a~v~~e~N~F~~g~~  294 (377)
                      |.+.....  =.+      ..+   .+.|.|+.+.+.. +++.  ...+     ..|.+++..++....
T Consensus       191 ~~~~~ghG--isiGS~g~~~~~~v~nV~v~n~~~~~t~-~girIkt~~g~~G~v~nI~~~ni~~~~v~~  256 (336)
T 1nhc_A          191 GTCSGGHG--LSIGSVGGRDDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITYSNIQLSGITD  256 (336)
T ss_dssp             CEEESSSE--EEEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEESS
T ss_pred             EEEECCcC--ceEccCccccCCCEEEEEEEeeEEECCC-cEEEEEEECCCCCEEeeeEEeeEEeecccc
Confidence            77765321  111      001   3578888877643 3432  1111     245556666555443

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.24  E-value=1.1e-05  Score=80.06  Aligned_cols=95  Identities=15%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             EEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeE
Q 017111          148 LRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML  222 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~L  222 (377)
                      |.+. ++||.|+|++|....     ....|||.+. .++||+|.+|.+....|. |.++. ..+|+|++|.+... .++-
T Consensus       152 i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~~~~g-hGis  226 (362)
T 1czf_A          152 FSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVNS-GENIWFTGGTCIGG-HGLS  226 (362)
T ss_dssp             EEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEEC-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESS-CCEE
T ss_pred             EEEe-eCCEEEEEEEEECCccccccCCCCCceeec-CcceEEEEeeEEecCCCE-EEEeC-CeEEEEEEEEEeCC-ceeE
Confidence            4444 566666666666421     3457999996 789999999999876554 88865 48999999999863 2677


Q ss_pred             ecCCCCCCCCcceeEEEecceecCC
Q 017111          223 IGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       223 iG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      ||+-.......-.+|++.++.|.++
T Consensus       227 iGS~G~~~~~~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          227 IGSVGDRSNNVVKNVTIEHSTVSNS  251 (362)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeeccccCCCCEEEEEEEeeEEECC
Confidence            8763111112224788888888764

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=98.24  E-value=1.6e-05  Score=83.97  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeC----------CceEEEeCceec
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE----------STDITVSRCHFS  215 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~----------s~~vTIS~n~f~  215 (377)
                      .+|.+..++||.|+|++|........|||.+. .+++|+|++|.|..+ |..|.++.+          +.+|+|++|.|.
T Consensus       355 ~~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~-~s~nV~I~n~~i~~g-DD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~  432 (608)
T 2uvf_A          355 HGIMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTG-DDCINFAAGTGEKAQEQEPMKGAWLFNNYFR  432 (608)
T ss_dssp             CSEEEESCEEEEEESCEEECTTCTTCCSEEEE-SCEEEEEESCEEECS-SCSEEEECCCSGGGGGSCCEEEEEEESCEEC
T ss_pred             CEEEEecCCCEEEeeEEEcCCCCCCCCeEEec-CCceEEEEeeEEecC-CceEEecCCcCccccccccccCEEEEeEEEe
Confidence            35777889999999999987554568999997 899999999999865 556888644          689999999998


Q ss_pred             CCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc-----cC---eeEEEcceEEcC
Q 017111          216 SHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR-----YA---KVHLYNNYTRNW  269 (377)
Q Consensus       216 ~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r-----~G---~~hv~NN~~~n~  269 (377)
                      ...-+..||+..   ...-.+|++.+|.|.++. +-=|++     .|   .+.+.|+.+.+.
T Consensus       433 ~ghg~~~iGS~~---~~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni~m~~v  490 (608)
T 2uvf_A          433 MGHGAIVTGSHT---GAWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNNAMRDL  490 (608)
T ss_dssp             SSSCSEEEESCC---TTCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEEEEEEE
T ss_pred             CCCCeEEEcccC---CCCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEeeEEEcc
Confidence            633234478742   122348999999998863 323332     23   245666665554

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.13  E-value=4e-05  Score=77.46  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             eEeccCcceeecccce----EEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCc
Q 017111          126 LSVSSYKTIDGRGQRV----KLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGL  197 (377)
Q Consensus       126 l~V~sn~TI~G~G~g~----~I~G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~----~~Dgl  197 (377)
                      +.|...-||+|+|..-    .-+-..|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|.+..    ..|| 
T Consensus       104 i~i~G~G~IdG~G~~~w~~~~~rp~~i~~~~~~nv~I~~iti~nsp---~~~i~i~-~~~nv~I~n~~I~~~d~~ntDG-  178 (422)
T 1rmg_A          104 FSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAP---AFHFTMD-TCSDGEVYNMAIRGGNEGGLDG-  178 (422)
T ss_dssp             ECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCS---SCSEEEE-EEEEEEEEEEEEECCSSTTCCS-
T ss_pred             EeeccCEEEECCcchhhcCCCCCceEEEEcccceEEEECeEEECCC---ceEEEEe-CcCCEEEEeEEEECCCCCCCcc-
Confidence            4444445666654310    00112355556667777777776532   2456665 56677777777654    3566 


Q ss_pred             eEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceec
Q 017111          198 IDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFD  245 (377)
Q Consensus       198 idi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~  245 (377)
                      ||+..  .+|+|++|.|...+-+.-|++.       ..+|++.+|.+.
T Consensus       179 idi~~--~nV~I~n~~i~~gDD~Iai~s~-------~~nI~I~n~~~~  217 (422)
T 1rmg_A          179 IDVWG--SNIWVHDVEVTNKDECVTVKSP-------ANNILVESIYCN  217 (422)
T ss_dssp             EEEEE--EEEEEEEEEEESSSEEEEEEEE-------EEEEEEEEEEEE
T ss_pred             EeecC--CeEEEEeeEEeCCCCeEEeCCC-------CcCEEEEeEEEc
Confidence            66643  6677777777655555555431       125666666554

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.13  E-value=2.6e-05  Score=77.34  Aligned_cols=102  Identities=20%  Similarity=0.279  Sum_probs=78.8

Q ss_pred             CcEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeee-----CCceEEEeCceecCCCc
Q 017111          146 KGLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-----ESTDITVSRCHFSSHDK  219 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~-----~s~~vTIS~n~f~~h~k  219 (377)
                      ..+.+..++||.|+|++|+... ....|||.+. .+++|+|++|.|..+.| .|.++.     .+.+|+|++|.|.. ..
T Consensus       175 ~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDD-cIaiks~~~~~~s~nI~I~n~~~~~-gh  251 (376)
T 1bhe_A          175 FHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDD-NVAIKAYKGRAETRNISILHNDFGT-GH  251 (376)
T ss_dssp             CSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSC-SEEEEECTTSCCEEEEEEEEEEECS-SS
T ss_pred             EEEEEeCCCcEEEEeEEEECCCCCCCCceEeec-CCceEEEEeCEEecCCC-eEEEcccCCCCCceEEEEEeeEEEc-cc
Confidence            4577888999999999999753 3458999997 89999999999986655 599974     68999999999984 34


Q ss_pred             eeEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017111          220 TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       220 ~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                      ++-||+..+    .-.+|++.+|.|.++. |--|++
T Consensus       252 GisiGSe~~----~v~nV~v~n~~~~~t~-~GirIK  282 (376)
T 1bhe_A          252 GMSIGSETM----GVYNVTVDDLKMNGTT-NGLRIK  282 (376)
T ss_dssp             CEEEEEEES----SEEEEEEEEEEEESCS-EEEEEE
T ss_pred             cEEeccCCc----cEeeEEEEeeEEeCCC-cEEEEE
Confidence            567786432    2348999999998864 334443

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.13  E-value=4.8e-05  Score=74.65  Aligned_cols=86  Identities=15%  Similarity=0.247  Sum_probs=54.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC---------CCCceEeeeCCceEEEeCceecCC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY---------DDGLIDITRESTDITVSRCHFSSH  217 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~---------~Dglidi~~~s~~vTIS~n~f~~h  217 (377)
                      .|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|++...         .|| ||+ ..+++|+|++|.|...
T Consensus       106 ~i~~~~~~nv~i~~i~i~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~d~~~~~ntDG-id~-~~s~nV~I~n~~i~~g  179 (339)
T 1ia5_A          106 FFAAHSLTNSVISGLKIVNSP---VQVFSVA-GSDYLTLKDITIDNSDGDDNGGHNTDA-FDI-GTSTYVTISGATVYNQ  179 (339)
T ss_dssp             CEEEEEEEEEEEESCEEECCS---SCCEEEE-SCEEEEEESCEEECGGGTTTTCCSCCS-EEE-ESCEEEEEESCEEECS
T ss_pred             EEEEeecCcEEEEEEEEEcCC---cceEEEe-cccCeEEeeEEEECCccccccCCCCCc-EEe-cCCceEEEEeeEEEcC
Confidence            466666777777777777543   3566665 677777777777531         566 666 3567777777777655


Q ss_pred             CceeEecCCCCCCCCcceeEEEecceecC
Q 017111          218 DKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       218 ~k~~LiG~~d~~~~d~~~~VT~hhNlf~~  246 (377)
                      +-+.-++++        .+|++.+|.+.+
T Consensus       180 DDcIaiksg--------~nI~i~n~~~~~  200 (339)
T 1ia5_A          180 DDCVAVNSG--------ENIYFSGGYCSG  200 (339)
T ss_dssp             SCSEEESSE--------EEEEEESCEEES
T ss_pred             CCeEEEeCC--------eEEEEEeEEEEC
Confidence            545444432        256666666654

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.08  E-value=0.00012  Score=72.59  Aligned_cols=139  Identities=12%  Similarity=0.136  Sum_probs=97.1

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCcee
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTM  221 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~  221 (377)
                      .|.+.+++||.|++|+|+....   -.|.+. .+++|.|+++++..     ..|| ||+ ..+++|+|++|.|...+-+.
T Consensus       153 ~i~~~~~~nv~I~~iti~nsp~---~~i~~~-~~~~v~i~~v~I~~~~~~~NtDG-id~-~~s~nV~I~n~~i~~gDDcI  226 (376)
T 1bhe_A          153 LIQINKSKNFTLYNVSLINSPN---FHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNV  226 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCSS---CSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSE
T ss_pred             EEEEEcceEEEEEeEEEECCCc---EEEEEe-CCCcEEEEeEEEECCCCCCCCce-Eee-cCCceEEEEeCEEecCCCeE
Confidence            4778889999999999998643   467786 79999999999975     5888 898 47899999999999877666


Q ss_pred             EecCCCCCCCCcceeEEEecceecCCCCCCCccccC-------eeEEEcceEEcCccceeeecC----C---ceEEEEce
Q 017111          222 LIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA-------KVHLYNNYTRNWGIYAVCASV----D---SQIYSQCN  287 (377)
Q Consensus       222 LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G-------~~hv~NN~~~n~~~~ai~~~~----~---a~v~~e~N  287 (377)
                      -+.+...  .....+|++.+|.|.....    +..|       .+.|.|+.+.+.. .++..-.    +   ..|.+|+.
T Consensus       227 aiks~~~--~~~s~nI~I~n~~~~~ghG----isiGSe~~~v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~ni~f~ni  299 (376)
T 1bhe_A          227 AIKAYKG--RAETRNISILHNDFGTGHG----MSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNV  299 (376)
T ss_dssp             EEEECTT--SCCEEEEEEEEEEECSSSC----EEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEE
T ss_pred             EEcccCC--CCCceEEEEEeeEEEcccc----EEeccCCccEeeEEEEeeEEeCCC-cEEEEEEecCCCceEeeEEEEeE
Confidence            6653110  0123589999998875321    3332       4688999888753 3432111    1   24666777


Q ss_pred             eEecCCcccee
Q 017111          288 IYEAGQKKMAF  298 (377)
Q Consensus       288 ~F~~g~~~~~~  298 (377)
                      .++....+..+
T Consensus       300 ~~~~v~~~i~i  310 (376)
T 1bhe_A          300 VMKNVAKPIVI  310 (376)
T ss_dssp             EEESCSEEEEE
T ss_pred             EEeCCCceEEE
Confidence            77766655443

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.04  E-value=8.6e-05  Score=72.73  Aligned_cols=97  Identities=18%  Similarity=0.331  Sum_probs=75.5

Q ss_pred             CcEEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCce
Q 017111          146 KGLRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~  220 (377)
                      .+|.+. ++||.|+|++|....     ....|||.+. .+++|+|.+|.+....|. |.++. ..+|+|++|.+... .+
T Consensus       124 ~~i~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~g-hG  198 (336)
T 1nhc_A          124 QAISVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDDC-IAINS-GESISFTGGTCSGG-HG  198 (336)
T ss_dssp             CCEEEE-EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSEE-EEESS-EEEEEEESCEEESS-SE
T ss_pred             cEEEEE-eCCEEEEEEEEECCCcccccCCCCCcEEec-CCCeEEEEeCEEEcCCCE-EEEeC-CeEEEEEeEEEECC-cC
Confidence            468899 999999999999753     3468999996 899999999999877664 89965 58999999999853 36


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCC
Q 017111          221 MLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       221 ~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      +.||+-.......-.+|++.++.|.++
T Consensus       199 isiGS~g~~~~~~v~nV~v~n~~~~~t  225 (336)
T 1nhc_A          199 LSIGSVGGRDDNTVKNVTISDSTVSNS  225 (336)
T ss_dssp             EEEEEESSSSCCEEEEEEEEEEEEESC
T ss_pred             ceEccCccccCCCEEEEEEEeeEEECC
Confidence            788873221112235899999998774

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=98.01  E-value=2.8e-05  Score=79.23  Aligned_cols=102  Identities=24%  Similarity=0.320  Sum_probs=77.2

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeC-----------CceEEEeCcee
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHF  214 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~-----------s~~vTIS~n~f  214 (377)
                      ..+.+..++||.|+||+|... ....|||.+. .+++|+|++|.|..+ |..|.++.+           +.+|+|++|.+
T Consensus       214 ~~i~~~~~~nv~i~~v~I~~~-~~NtDGidi~-~s~nV~I~n~~i~~g-DDcIaiksg~~~dg~~~~~ps~nI~I~n~~~  290 (448)
T 3jur_A          214 WCIHPVLSENVIIRNIEISST-GPNNDGIDPE-SCKYMLIEKCRFDTG-DDSVVIKSGRDADGRRIGVPSEYILVRDNLV  290 (448)
T ss_dssp             CSEEEESCEEEEEESCEEEEC-STTCCSBCCB-SCEEEEEESCEEEES-SEEEEEBCCCHHHHHHHCCCEEEEEEESCEE
T ss_pred             ceEeeeccCCEEEEeEEEeec-cCCCcccccc-CCcCEEEEeeEEEeC-CCcEEeccCccccccccCCCceeEEEEEeEE
Confidence            357777899999999999874 3457999997 799999999999975 556899866           68999999999


Q ss_pred             --cCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcc
Q 017111          215 --SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       215 --~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~  254 (377)
                        ..-.-++-||+...   ..-.+|++.+|.|.++ .|.=|+
T Consensus       291 ~~~~gh~gisiGS~~~---~~v~nV~v~n~~~~~t-~~GirI  328 (448)
T 3jur_A          291 ISQASHGGLVIGSEMS---GGVRNVVARNNVYMNV-ERALRL  328 (448)
T ss_dssp             ECSSCSEEEEECSSCT---TCEEEEEEESCEEESC-SEEEEE
T ss_pred             ecCCCcceEEECCccc---CcEEEEEEEEEEEecc-cceEEE
Confidence              32223777887521   2235899999999654 334444

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.88  E-value=6.4e-05  Score=74.11  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             cEEEeeeccEEEeeeEEeCC--C-----------CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCce
Q 017111          147 GLRLKECEHVIICNLEFEGG--K-----------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g--~-----------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~  213 (377)
                      +|.+..++||.|++++|...  .           ....|||.+. .+++|+|++|.+....| .|.++. +.+|+|++|.
T Consensus       129 ~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDD-cIaiks-g~nI~i~n~~  205 (349)
T 1hg8_A          129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDD-CVAVTS-GTNIVVSNMY  205 (349)
T ss_dssp             EEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSC-SEEESS-EEEEEEEEEE
T ss_pred             eEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEc-cccEEEEEeeEEecCCC-eEEeeC-CeEEEEEeEE
Confidence            47777899999999999863  1           2458999996 89999999999986555 599965 6999999999


Q ss_pred             ecCCCceeEecCCCCCCCCcceeEEEecceecCC
Q 017111          214 FSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       214 f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      +... .++-||+-.......-.+|++.++.|.++
T Consensus       206 ~~~g-hGisiGS~G~~~~~~v~nV~v~n~~~~~~  238 (349)
T 1hg8_A          206 CSGG-HGLSIGSVGGKSDNVVDGVQFLSSQVVNS  238 (349)
T ss_dssp             EESS-CCEEEEEESSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeCC-cceEEccccccccCCEEEEEEEEEEEECC
Confidence            9852 25777763211112235899999988763

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=97.83  E-value=0.0025  Score=67.12  Aligned_cols=137  Identities=12%  Similarity=0.084  Sum_probs=92.8

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCceEeeeCCceEEEeCceecCCCceeEe
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~----~~Dglidi~~~s~~vTIS~n~f~~h~k~~Li  223 (377)
                      |.+.+++||.|++|+|+....   -+|.+. .+++|.|+++.+..    ..|| ||+ ..+++|+|++|.|...+-+.-+
T Consensus       334 i~~~~~~nv~I~giti~ns~~---~~i~~~-~~~nv~i~~v~i~~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDD~Iai  407 (608)
T 2uvf_A          334 MTLRGVENVYLAGFTVRNPAF---HGIMNL-ENHNVVANGLIHQTYDANNGDG-IEF-GNSQNVMVFNNFFDTGDDCINF  407 (608)
T ss_dssp             EEEESEEEEEEESCEEECCSS---CSEEEE-SCEEEEEESCEEECTTCTTCCS-EEE-ESCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEeeeeEEEeCcEEecCCC---CEEEEe-cCCCEEEeeEEEcCCCCCCCCe-EEe-cCCceEEEEeeEEecCCceEEe
Confidence            566779999999999998643   467886 78999999999864    4788 899 4789999999999987777666


Q ss_pred             cCCC-CC-CCC-cceeEEEecceecCCCCCCCccc----cC--eeEEEcceEEcCccceeee-----cCC--ceEEEEce
Q 017111          224 GADP-SH-VAD-RCIRVTIHHCFFDGTRQRHPRVR----YA--KVHLYNNYTRNWGIYAVCA-----SVD--SQIYSQCN  287 (377)
Q Consensus       224 G~~d-~~-~~d-~~~~VT~hhNlf~~~~~R~Pr~r----~G--~~hv~NN~~~n~~~~ai~~-----~~~--a~v~~e~N  287 (377)
                      .+.. .. ... ...+|++-+|.+.+...-. .+.    .+  .+.|.||++.+.. .++..     +.+  ..|.++++
T Consensus       408 ksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~-~iGS~~~~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni  485 (608)
T 2uvf_A          408 AAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI-VTGSHTGAWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNN  485 (608)
T ss_dssp             ECCCSGGGGGSCCEEEEEEESCEECSSSCSE-EEESCCTTCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEE
T ss_pred             cCCcCccccccccccCEEEEeEEEeCCCCeE-EEcccCCCCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEee
Confidence            4321 11 000 1248999999887643210 011    11  4789999998753 34422     111  35667777


Q ss_pred             eEecC
Q 017111          288 IYEAG  292 (377)
Q Consensus       288 ~F~~g  292 (377)
                      .++..
T Consensus       486 ~m~~v  490 (608)
T 2uvf_A          486 AMRDL  490 (608)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            77665

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=97.79  E-value=0.0006  Score=67.28  Aligned_cols=137  Identities=12%  Similarity=0.039  Sum_probs=87.6

Q ss_pred             eCCcEEEeeeccEEEeeeEEeCCCCCCCCce-EecCCCceEEEEceeeecCCCCceEeeeC------CceEEEeCcee-c
Q 017111          144 TGKGLRLKECEHVIICNLEFEGGKGPDVDAI-QIKPKSKHIWIDRCSLRDYDDGLIDITRE------STDITVSRCHF-S  215 (377)
Q Consensus       144 ~G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI-~i~~~s~nVwIDHcs~s~~~Dglidi~~~------s~~vTIS~n~f-~  215 (377)
                      .+.+|.|.+++||+|.|.+|..+    .|++ .+...+++|-|-+|.|.+...+++--..+      .-.||+.+|+| .
T Consensus       149 ~~DaI~i~~s~nVwIDHcs~s~~----~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~  224 (346)
T 1pxz_A          149 DGDAITMRNVTNAWIDHNSLSDC----SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGP  224 (346)
T ss_dssp             CCCSEEEESCEEEEEESCEEECC----SSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECS
T ss_pred             CCCEEEEecCceEEEEeeEEecC----CCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeC
Confidence            35689999999999999999965    4665 56347899999999998754443322111      23899999999 4


Q ss_pred             CCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCcc---ceeeecC---------Cce
Q 017111          216 SHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGI---YAVCASV---------DSQ  281 (377)
Q Consensus       216 ~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~---~ai~~~~---------~a~  281 (377)
                      +.. ..-.+..         -.+-+.+|+|.+...+.=..+. .++-+.||||.+...   -.+..+.         +-.
T Consensus       225 ~~~~R~Pr~r~---------g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~  295 (346)
T 1pxz_A          225 NAGQRMPRARY---------GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV  295 (346)
T ss_dssp             SEEECTTEEES---------SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSC
T ss_pred             CccccCccEec---------ceEEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCcccccccc
Confidence            321 1111221         1678899999886644322222 468999999987532   0111111         113


Q ss_pred             EEEEceeEecCC
Q 017111          282 IYSQCNIYEAGQ  293 (377)
Q Consensus       282 v~~e~N~F~~g~  293 (377)
                      ..++++.|.+|.
T Consensus       296 ~~~~g~~~~nG~  307 (346)
T 1pxz_A          296 WRSTRDAFINGA  307 (346)
T ss_dssp             EEEESCEEETTC
T ss_pred             EecCCCeEEece
Confidence            566777777765

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=97.77  E-value=0.00024  Score=72.71  Aligned_cols=115  Identities=13%  Similarity=0.083  Sum_probs=77.3

Q ss_pred             cCcceeecccceEEeCCc--------EEEeeeccEEEeeeEEeCCCCC---------CCCceEecCCCceEEEEceeeec
Q 017111          130 SYKTIDGRGQRVKLTGKG--------LRLKECEHVIICNLEFEGGKGP---------DVDAIQIKPKSKHIWIDRCSLRD  192 (377)
Q Consensus       130 sn~TI~G~G~g~~I~G~g--------l~i~~a~NVIIRnL~ir~g~~~---------~~DaI~i~~~s~nVwIDHcs~s~  192 (377)
                      .|++|.|.|...+|.|.|        |.+..++||.|++|+|+..+.-         +.|||.+  .+++|+|.+|.+..
T Consensus       109 ~nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w~ih~s~~V~i~NtDGi~i--~s~nV~I~n~~I~~  186 (464)
T 1h80_A          109 RNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH--WSRNGIIERIKQNN  186 (464)
T ss_dssp             EEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEE--EEEEEEEEEEEEES
T ss_pred             cceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccceEeeceeeeeecCCCcee--eccCEEEeceEEec
Confidence            567788776444666653        5677899999999999976531         2477777  48999999999998


Q ss_pred             CCCCc--eEeeeCCceEEEeCceecCCCceeEecCCCC----CCCCcceeEEEecceecCCC
Q 017111          193 YDDGL--IDITRESTDITVSRCHFSSHDKTMLIGADPS----HVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       193 ~~Dgl--idi~~~s~~vTIS~n~f~~h~k~~LiG~~d~----~~~d~~~~VT~hhNlf~~~~  248 (377)
                      ..|+.  .+. ..+.+|+|++|.|.. ..++-|...+.    .......+|+|.++.|.+..
T Consensus       187 gddgiGs~~~-~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv~  246 (464)
T 1h80_A          187 ALFGYGLIQT-YGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGL  246 (464)
T ss_dssp             CCTTCEEEEE-SEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSS
T ss_pred             CCCeEEeccc-CCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECCc
Confidence            76653  333 467899999999887 44443322210    00111247888888887643

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=97.75  E-value=0.00031  Score=68.68  Aligned_cols=110  Identities=16%  Similarity=0.267  Sum_probs=79.2

Q ss_pred             hHHHhhhcCC----CeEEEEEeceEEEecceeEec---cCcceeeccc-ceEEeCC-------------cEEEeeeccEE
Q 017111           99 SLREGCRMKE----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ-RVKLTGK-------------GLRLKECEHVI  157 (377)
Q Consensus        99 SLr~Ai~~~~----Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~-g~~I~G~-------------gl~i~~a~NVI  157 (377)
                      ++++||++..    .|++|+--.|+.  ++.|.|.   +++||.|.|. ..+|.+.             .|.+. +++++
T Consensus        21 TIq~AI~aap~~~~~~~~I~I~~G~Y--~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   97 (319)
T 1gq8_A           21 TVSEAVAAAPEDSKTRYVIRIKAGVY--RENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEE--ECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTCE
T ss_pred             CHHHHHHhccccCCceEEEEEcCCeE--eeeeeccCCCccEEEEEcCCCccEEEecccccCCCCccceEEEEEE-CCCEE
Confidence            6999997632    234455467988  4678885   6799999974 4455543             36775 89999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC
Q 017111          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       158 IRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~  216 (377)
                      ++||+|+...+   ...-||.+  .++++.|.+|.|....|.|..-   .....+.+|.|..
T Consensus        98 ~~nlt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~---~~r~~~~~c~I~G  154 (319)
T 1gq8_A           98 ARDITFQNTAGAAKHQAVALRV--GSDLSAFYRCDILAYQDSLYVH---SNRQFFINCFIAG  154 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEE--CCTTEEEEEEEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             EEEeEeEccCCCcCCceEEEEe--cCCcEEEEEeEECccceeeeec---CccEEEEecEEEe
Confidence            99999997543   23456777  4788999999999999986653   2345778888873

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=97.74  E-value=0.001  Score=65.52  Aligned_cols=140  Identities=17%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             CceEecCCCceEEEEceeeecC------------CCCceEeeeCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEE
Q 017111          172 DAIQIKPKSKHIWIDRCSLRDY------------DDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVT  238 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s~~------------~Dglidi~~~s~~vTIS~n~f~~h~k~~L-iG~~d~~~~d~~~~VT  238 (377)
                      .+|.|. +++||+|-++.|...            .|+ |.+ .++++|-|-.|.|+...-++| +..       ....||
T Consensus        83 ~Gi~I~-~a~NVIIrnl~i~~~~~~~~~~~~~~~~Da-I~i-~~s~nVWIDHcs~s~~~Dg~idi~~-------~s~~vT  152 (340)
T 3zsc_A           83 GGLVIK-DAQNVIIRNIHFEGFYMEDDPRGKKYDFDY-INV-ENSHHIWIDHITFVNGNDGAVDIKK-------YSNYIT  152 (340)
T ss_dssp             EEEEEE-SCEEEEEESCEEECCCCTTCTTSCSSCCCS-EEE-ESCEEEEEESCEEESCSSCSEEEET-------TCEEEE
T ss_pred             CceEEE-cCceEEEeCeEEECCccccCccCCcCCCCe-EEE-ecCCcEEEEeeeeccCCccceEEec-------CCceEE
Confidence            578886 789999999999864            343 677 468899999998886533322 211       123899


Q ss_pred             EecceecCCCCCCCcccc------------CeeEEEcceEEcCccceeeecCCceEEEEceeEecCCccce----eeeec
Q 017111          239 IHHCFFDGTRQRHPRVRY------------AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMA----FKYLT  302 (377)
Q Consensus       239 ~hhNlf~~~~~R~Pr~r~------------G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~----~~~~~  302 (377)
                      +-+|+|.++..= -++..            -++.+.+|+|.+.....=..+ ...+.+.||||.++.++..    +..+.
T Consensus       153 ISnn~f~~h~k~-~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r-~G~~Hv~NN~~~n~~~~~~~~~~~~~ya  230 (340)
T 3zsc_A          153 VSWNKFVDHDKV-SLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIR-FGMAHVFNNFYSMGLRTGVSGNVFPIYG  230 (340)
T ss_dssp             EESCEEESCSBC-CEECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEE-SSEEEEESCEEECCCCCSCSSCCSCCEE
T ss_pred             EECcEeccCcee-eEeCcCCCCccccccCCcEEEEECeEecCCCCCCCccc-CCeEEEEccEEECCccccccccceeeee
Confidence            999999875422 22211            268999999988765443333 2467889999998422111    10000


Q ss_pred             cccCCcccCCCceEEecCCeeecccc
Q 017111          303 EKASDKEEARTDCIRSEGDLSSLKLK  328 (377)
Q Consensus       303 ~~~~~~~~~~~G~~~~~gn~~~ng~~  328 (377)
                           ........+..++|.|.+...
T Consensus       231 -----i~~~~~a~i~~E~N~F~~~~~  251 (340)
T 3zsc_A          231 -----VASAMGAKVHVEGNYFMGYGA  251 (340)
T ss_dssp             -----EEEETTCEEEEESCEEECSCH
T ss_pred             -----EecCCCCEEEEECcEEECCCc
Confidence                 011234467788888887654

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.71  E-value=0.00026  Score=69.39  Aligned_cols=94  Identities=14%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             cEEEeeecc-EEEeeeEEeCCC------CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCc
Q 017111          147 GLRLKECEH-VIICNLEFEGGK------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK  219 (377)
Q Consensus       147 gl~i~~a~N-VIIRnL~ir~g~------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k  219 (377)
                      .|.+..++| |.|+||+|....      ....|||.+  .++||+|.+|.+... |..|.++.+ .+|+|++|.+... .
T Consensus       121 ~i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi--~s~nV~I~n~~i~~g-DDcIaiksg-~nI~i~n~~~~~g-h  195 (335)
T 1k5c_A          121 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV--SANNVTIQNCIVKNQ-DDCIAINDG-NNIRFENNQCSGG-H  195 (335)
T ss_dssp             CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE--ECSSEEEESCEEESS-SCSEEEEEE-EEEEEESCEEESS-C
T ss_pred             eEEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc--cCCeEEEEeeEEEcC-CCEEEeeCC-eeEEEEEEEEECC-c
Confidence            467777899 999999999742      456899999  589999999999865 556999764 8999999999863 2


Q ss_pred             eeEecCCCCCCCCcceeEEEecceecCC
Q 017111          220 TMLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       220 ~~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      ++-||+...  ...-.+|++.++.|.++
T Consensus       196 GisIGS~g~--~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          196 GISIGSIAT--GKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             CEEEEEECT--TCEEEEEEEESCEEEEE
T ss_pred             cCeEeeccC--CCCEEEEEEEeeEEECC
Confidence            577776421  11224789988888764

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=97.67  E-value=0.0009  Score=65.95  Aligned_cols=113  Identities=12%  Similarity=0.239  Sum_probs=78.4

Q ss_pred             hhHHHhhhcCC---CeEEEEEeceEEEecceeEec-cCcceeeccc-ceEEeCC-------------------cEEEeee
Q 017111           98 GSLREGCRMKE---PLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQ-RVKLTGK-------------------GLRLKEC  153 (377)
Q Consensus        98 GSLr~Ai~~~~---Pr~IVf~vsG~I~l~~~l~V~-sn~TI~G~G~-g~~I~G~-------------------gl~i~~a  153 (377)
                      -++++||++..   .+++|+--.|+.  ++.|.|. +++||.|.|. ...|.+.                   .|.+. +
T Consensus        19 ~TIq~Ai~aap~~~~~~~I~I~~G~Y--~E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~v~-a   95 (342)
T 2nsp_A           19 KTIADAIASAPAGSTPFVILIKNGVY--NERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS-A   95 (342)
T ss_dssp             SSHHHHHHTSCSSSSCEEEEECSEEE--ECCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC-S
T ss_pred             chHHHHHHhcccCCCcEEEEEeCCEE--EEEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEEEE-C
Confidence            46899997632   234455467988  4668885 6799999974 4445432                   36665 8


Q ss_pred             ccEEEeeeEEeCCCC---------------CCCC--ceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC
Q 017111          154 EHVIICNLEFEGGKG---------------PDVD--AIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       154 ~NVIIRnL~ir~g~~---------------~~~D--aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~  216 (377)
                      ++++++||+|+....               ....  ||.|.-.++++.+.+|.|....|.|++-   ....-+.+|.|..
T Consensus        96 ~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~---~gr~~~~~c~I~G  172 (342)
T 2nsp_A           96 KDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVS---GGRSFFSDCRISG  172 (342)
T ss_dssp             BSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             CCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEEC---CCCEEEEcCEEEe
Confidence            999999999997541               1223  5522446889999999999999986654   3467778888773

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=97.66  E-value=0.0021  Score=63.71  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             CCceEecCCCceEEEEceeeecC-------CCCceEeeeCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecc
Q 017111          171 VDAIQIKPKSKHIWIDRCSLRDY-------DDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHC  242 (377)
Q Consensus       171 ~DaI~i~~~s~nVwIDHcs~s~~-------~Dglidi~~~s~~vTIS~n~f~~h~k~~L-iG~~d~~~~d~~~~VT~hhN  242 (377)
                      +.+|.|..+++||+|.+..|.+.       .|+ |.+. ++++|-|-.|.|+.-...++ .+.      .....||+-+|
T Consensus       123 G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~Da-I~i~-~s~nvwIDHcs~s~~~d~~~~~~~------~~s~~vTISnn  194 (359)
T 1qcx_A          123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA-ITVD-DSDLVWIDHVTTARIGRQHIVLGT------SADNRVTISYS  194 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCS-EEEE-SCCCEEEESCEEEEESSCSEEECS------SCCEEEEEESC
T ss_pred             cceEEEecCCCCEEEeCcEEEecCCcccccCce-eEec-CCceEEEEeeEeeccCcCceeecc------cccccEEEECc
Confidence            35688843689999999999853       465 6774 68899899998874333222 121      11248999999


Q ss_pred             eecCCCCCCCccc---------cC---eeEEEcceEEcCccceeeecCCceEEEEceeEecCCccceeeeeccccCCccc
Q 017111          243 FFDGTRQRHPRVR---------YA---KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE  310 (377)
Q Consensus       243 lf~~~~~R~Pr~r---------~G---~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~  310 (377)
                      +|.+......+.+         .|   .+-+.+|+|.+.....-..+.+..+.+.||||.+-..-   .+        ..
T Consensus       195 ~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~---a~--------~~  263 (359)
T 1qcx_A          195 LIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGH---AF--------EI  263 (359)
T ss_dssp             EEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEE---EE--------EE
T ss_pred             EecCCccccccCcccccceeEEecCCCCeehcccEeccCcccCceecCCceEEEEccEEECccCe---EE--------ec
Confidence            9986443211111         12   57899999987655443344445688899999864211   11        01


Q ss_pred             CCCceEEecCCeeeccccc
Q 017111          311 ARTDCIRSEGDLSSLKLKA  329 (377)
Q Consensus       311 ~~~G~~~~~gn~~~ng~~~  329 (377)
                      .....+..++|.|.++..+
T Consensus       264 ~~~~~i~~e~N~F~~~~~~  282 (359)
T 1qcx_A          264 GTGGYVLAEGNVFQDVNVV  282 (359)
T ss_dssp             CTTEEEEEESCEEEEEEEE
T ss_pred             CCCceEEEEeeEEECCCcc
Confidence            1234567788888877543

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=97.64  E-value=0.00041  Score=67.74  Aligned_cols=109  Identities=19%  Similarity=0.313  Sum_probs=78.4

Q ss_pred             hHHHhhhcCC----CeEEEEEeceEEEecceeEec---cCcceeeccc-ceEEeCC-------------cEEEeeeccEE
Q 017111           99 SLREGCRMKE----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ-RVKLTGK-------------GLRLKECEHVI  157 (377)
Q Consensus        99 SLr~Ai~~~~----Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~-g~~I~G~-------------gl~i~~a~NVI  157 (377)
                      ++++||++..    .|++|+--.|+.  ++.|.|.   +++||.|.|. ..+|.+.             .|.+. +++++
T Consensus        17 TIq~AI~aap~~~~~~~~I~I~~G~Y--~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   93 (317)
T 1xg2_A           17 TLAEAVAAAPDKSKTRYVIYVKRGTY--KENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAV-GQGFI   93 (317)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEE--ECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEEC-STTCE
T ss_pred             cHHHHHhhcccCCCceEEEEEcCCEE--eeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEEE-CCCEE
Confidence            6999997632    234455467988  4678885   6799999974 4456543             36774 89999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       158 IRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      ++||+|+...+   ...-||.+  .++++.|.+|.|....|.|..-   ...-.+.+|.|.
T Consensus        94 ~~~lt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~---~~r~~~~~c~I~  149 (317)
T 1xg2_A           94 LQDICIQNTAGPAKDQAVALRV--GADMSVINRCRIDAYQDTLYAH---SQRQFYRDSYVT  149 (317)
T ss_dssp             EESCEEEECCCGGGCCCCSEEE--CCTTEEEESCEEECSTTCEEEC---SSEEEEESCEEE
T ss_pred             EEEeEEecccCCccCceEEEEE--eCCcEEEEEeEeCccccceeec---CccEEEEeeEEE
Confidence            99999997643   23456777  4788999999999999986653   233477888876

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=97.62  E-value=0.0011  Score=67.37  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---CCCCceEeeeCCceEEEeCceecCCCceeEe
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~---~~Dglidi~~~s~~vTIS~n~f~~h~k~~Li  223 (377)
                      .|.+.+++||.|++|+++....   -.|.+. .+++|.|+++++..   ..|| ||+ ..+++|+|++|.|...+-+.-+
T Consensus       192 ~i~~~~~~nv~i~giti~nsp~---~~i~~~-~~~nv~i~~v~I~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIai  265 (448)
T 3jur_A          192 FVQFYRCRNVLVEGVKIINSPM---WCIHPV-LSENVIIRNIEISSTGPNNDG-IDP-ESCKYMLIEKCRFDTGDDSVVI  265 (448)
T ss_dssp             SEEEESCEEEEEESCEEESCSS---CSEEEE-SCEEEEEESCEEEECSTTCCS-BCC-BSCEEEEEESCEEEESSEEEEE
T ss_pred             EEEEEcccceEEEeeEEEeCCC---ceEeee-ccCCEEEEeEEEeeccCCCcc-ccc-cCCcCEEEEeeEEEeCCCcEEe
Confidence            3778889999999999997643   368886 79999999999975   6899 898 4689999999999987777777


Q ss_pred             cCCCCC----CCCcceeEEEecceecCCCCCCCcccc------C--eeEEEcceEEcCcccee
Q 017111          224 GADPSH----VADRCIRVTIHHCFFDGTRQRHPRVRY------A--KVHLYNNYTRNWGIYAV  274 (377)
Q Consensus       224 G~~d~~----~~d~~~~VT~hhNlf~~~~~R~Pr~r~------G--~~hv~NN~~~n~~~~ai  274 (377)
                      .+....    ..--..+|++.+|.+.+..... -+..      +  .+.+.|+++.+.. .++
T Consensus       266 ksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~-gisiGS~~~~~v~nV~v~n~~~~~t~-~Gi  326 (448)
T 3jur_A          266 KSGRDADGRRIGVPSEYILVRDNLVISQASHG-GLVIGSEMSGGVRNVVARNNVYMNVE-RAL  326 (448)
T ss_dssp             BCCCHHHHHHHCCCEEEEEEESCEEECSSCSE-EEEECSSCTTCEEEEEEESCEEESCS-EEE
T ss_pred             ccCccccccccCCCceeEEEEEeEEecCCCcc-eEEECCcccCcEEEEEEEEEEEeccc-ceE
Confidence            654110    0000248999998873322221 1211      1  4688999887642 444

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.58  E-value=0.0016  Score=64.16  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             EEE-e-eeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----------------CCCCceEeeeCCceEE
Q 017111          148 LRL-K-ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDIT  208 (377)
Q Consensus       148 l~i-~-~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----------------~~Dglidi~~~s~~vT  208 (377)
                      |.+ . .++||.|++|+|+...   ..+|.+. .+++|.|+++++..                 ..|| ||+ ..+++|+
T Consensus       105 i~~~~~~~~nv~I~giti~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDG-id~-~~s~nV~  178 (349)
T 1hg8_A          105 FIVVQKTTGNSKITNLNIQNWP---VHCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVT  178 (349)
T ss_dssp             EEEEEEEESSEEEESCEEECCS---SEEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEE
T ss_pred             EEEeecCcCcEEEEEEEEEcCC---CceEEEe-ccCCEEEEEEEEECCCCccccccccccccCCCCCe-EEE-ccccEEE
Confidence            667 6 6779999999999764   4678887 89999999999974                 2677 888 5699999


Q ss_pred             EeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcc------ccC---eeEEEcceEEcCccceeee--c
Q 017111          209 VSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV------RYA---KVHLYNNYTRNWGIYAVCA--S  277 (377)
Q Consensus       209 IS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~------r~G---~~hv~NN~~~n~~~~ai~~--~  277 (377)
                      |++|.|...+-+.-+.++        .+|++.+|.+.....  =.+      ..+   .+.|.|+.+.+.. .++..  .
T Consensus       179 I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~G~~~~~~v~nV~v~n~~~~~~~-~GirIKt~  247 (349)
T 1hg8_A          179 LDNNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHG--LSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCRIKSN  247 (349)
T ss_dssp             EEEEEEECSSCSEEESSE--------EEEEEEEEEEESSCC--EEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEEEEEE
T ss_pred             EEeeEEecCCCeEEeeCC--------eEEEEEeEEEeCCcc--eEEccccccccCCEEEEEEEEEEEECCC-cEEEEEec
Confidence            999999876666666543        378888888865321  111      112   3578888877642 33322  1


Q ss_pred             CC-----ceEEEEceeEecCC
Q 017111          278 VD-----SQIYSQCNIYEAGQ  293 (377)
Q Consensus       278 ~~-----a~v~~e~N~F~~g~  293 (377)
                      .+     ..|.+++..++...
T Consensus       248 ~g~~G~v~nI~~~ni~~~~v~  268 (349)
T 1hg8_A          248 SGATGTINNVTYQNIALTNIS  268 (349)
T ss_dssp             TTCCEEEEEEEEEEEEEEEEE
T ss_pred             CCCCccccceEEEEEEEEccc
Confidence            11     34555665555543

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.45  E-value=0.0029  Score=61.97  Aligned_cols=140  Identities=18%  Similarity=0.213  Sum_probs=89.6

Q ss_pred             CCcEEEee-eccEEEeeeEEeCCC--C---CCCC-ceEecCCCceEEEEceeeecCCCCceEeeeCC-----ceEEEeCc
Q 017111          145 GKGLRLKE-CEHVIICNLEFEGGK--G---PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRES-----TDITVSRC  212 (377)
Q Consensus       145 G~gl~i~~-a~NVIIRnL~ir~g~--~---~~~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s-----~~vTIS~n  212 (377)
                      +.+|.|.. ++||+|.|..|..+.  .   ...| .|.+..++++|-|-+|-|.+...++|--..++     ..||+-+|
T Consensus       120 ~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~~~~~vT~~~N  199 (326)
T 3vmv_A          120 GTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDKITYHHN  199 (326)
T ss_dssp             SCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEECEEECSSSCGGGCCEEEEEESC
T ss_pred             CCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCceEEEECCCCCCcccCccEEEEee
Confidence            45688886 899999999997542  1   1134 45665568999999999987555544322111     37999999


Q ss_pred             eecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCc-----------ccee----e
Q 017111          213 HFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWG-----------IYAV----C  275 (377)
Q Consensus       213 ~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~-----------~~ai----~  275 (377)
                      +|.+.. +.=++..         -.+-+.+|+|.+...+.-..+. +++-+.||||.+.+           ...+    .
T Consensus       200 ~f~~~~~R~Pr~r~---------G~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 3vmv_A          200 YFNNLNSRVPLIRY---------ADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYG  270 (326)
T ss_dssp             EEEEEEECTTEEES---------CEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSC
T ss_pred             EecCCcCcCCcccC---------CcEEEEccEEECCCceEEeecCCcEEEEEceEEECCcCccccccccccccceeeccC
Confidence            997421 1111211         1466789999887666544444 57899999999862           1111    1


Q ss_pred             ecCCceEEEEceeEecCC
Q 017111          276 ASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       276 ~~~~a~v~~e~N~F~~g~  293 (377)
                      ....+.+..++|.|.+..
T Consensus       271 s~~~g~~~~~~n~~~n~~  288 (326)
T 3vmv_A          271 SPSTGYWNLRGNVFVNTP  288 (326)
T ss_dssp             SSSBCEEEEESCEEESSC
T ss_pred             CCCceEEEEECCeEccCc
Confidence            223345667899998653

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=97.38  E-value=0.0052  Score=61.05  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             hhHHHhhhcCCC---eEEEEEeceEEEecceeEec-cCcceeeccc-ceEEeC-------------------CcEEEeee
Q 017111           98 GSLREGCRMKEP---LWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQ-RVKLTG-------------------KGLRLKEC  153 (377)
Q Consensus        98 GSLr~Ai~~~~P---r~IVf~vsG~I~l~~~l~V~-sn~TI~G~G~-g~~I~G-------------------~gl~i~~a  153 (377)
                      -++++||++..+   +.+|+--.|++  ++.|.|. +++||.|.|. ...|.+                   ..|.+. +
T Consensus        45 ~TIq~Ai~aa~~~~~~~~I~I~~G~Y--~E~v~I~k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv~V~-a  121 (364)
T 3uw0_A           45 SSINAALKSAPKDDTPFIIFLKNGVY--TERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVN-A  121 (364)
T ss_dssp             CCHHHHHHHSCSSSSCEEEEECSEEE--CCCEEECSTTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSEEEC-S
T ss_pred             ccHHHHHhhcccCCCcEEEEEeCCEE--EEEEEEcCCeEEEEecCCCCeEEEccccccccccccccccccCeeEEEEE-C
Confidence            358899876322   23444457888  5668886 5799999974 344543                   235664 8


Q ss_pred             ccEEEeeeEEeCCCC-----------------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          154 EHVIICNLEFEGGKG-----------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       154 ~NVIIRnL~ir~g~~-----------------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      ++++++||+|+....                 ...-||.+...++++.+.+|.|....|.|.+-  .....-+.+|.|.
T Consensus       122 ~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~--~~gr~yf~~c~I~  198 (364)
T 3uw0_A          122 PNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSK--TGSRSYFSDCEIS  198 (364)
T ss_dssp             TTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEEC--TTCEEEEESCEEE
T ss_pred             CCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeC--CCCCEEEEcCEEE
Confidence            999999999997531                 11346666435889999999999999997653  2457777888876

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.37  E-value=0.0037  Score=61.94  Aligned_cols=139  Identities=12%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             CCceEecCCCceEEEEceeeec-------CCCCceEeeeCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecc
Q 017111          171 VDAIQIKPKSKHIWIDRCSLRD-------YDDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHC  242 (377)
Q Consensus       171 ~DaI~i~~~s~nVwIDHcs~s~-------~~Dglidi~~~s~~vTIS~n~f~~h~k~~L-iG~~d~~~~d~~~~VT~hhN  242 (377)
                      +.+|.|..+++||+|.++.|.+       ..|+ |.+ .++++|-|-.|.|+.-...++ .|..      ....||+-+|
T Consensus       123 G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~Da-I~i-~~s~nVwIDHcs~s~~~d~~~~~g~~------~s~~VTISnn  194 (359)
T 1idk_A          123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTS------ADNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCC------TTCEEEEESC
T ss_pred             cceEEEecCCCcEEEeCeEEEcccccccccCCc-eee-cCCCcEEEEeeEeecCCCCcEEeccc------CcceEEEECc
Confidence            4568885368999999999985       4466 677 468999999999884322222 1211      1238999999


Q ss_pred             eecCCCCCCCc--------cc-cC---eeEEEcceEEcCccceeeecCCceEEEEceeEecCCccceeeeeccccCCccc
Q 017111          243 FFDGTRQRHPR--------VR-YA---KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE  310 (377)
Q Consensus       243 lf~~~~~R~Pr--------~r-~G---~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~  310 (377)
                      +|.+.....-+        .- .|   .+.+.+|+|.+.....=..+.+..+.+.||||.+-..-.   +.        .
T Consensus       195 ~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~---i~--------~  263 (359)
T 1idk_A          195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHA---FE--------I  263 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEE---EE--------E
T ss_pred             EecCCcccccccCccccceEEEEecCCCeEEEceEeecCcccCccccCCceEEEECCEEecccceE---Ee--------c
Confidence            99854421111        11 12   689999999987655434444556888999998732111   10        1


Q ss_pred             CCCceEEecCCeeecccc
Q 017111          311 ARTDCIRSEGDLSSLKLK  328 (377)
Q Consensus       311 ~~~G~~~~~gn~~~ng~~  328 (377)
                      .....+..++|.|.++..
T Consensus       264 ~~~~~i~~e~N~F~~~~~  281 (359)
T 1idk_A          264 GEGGYVLAEGNVFQNVDT  281 (359)
T ss_dssp             CTTCEEEEESCEEEEEEE
T ss_pred             cCCcEEEEEccEEECCCC
Confidence            123456677777776543

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.29  E-value=0.00054  Score=71.91  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             cCcceeecccceEEeCC---cEEEeeeccE--EEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCC
Q 017111          130 SYKTIDGRGQRVKLTGK---GLRLKECEHV--IICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRES  204 (377)
Q Consensus       130 sn~TI~G~G~g~~I~G~---gl~i~~a~NV--IIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s  204 (377)
                      .|++|.|.    +|...   .+.+..++||  .|+++++........|||.+.   +||.|.+|.|..+.| +|.++  +
T Consensus       333 ~NV~I~Gi----ti~NSp~w~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~---~NV~I~nc~I~~gDD-cIaIk--s  402 (574)
T 1ogo_X          333 QTWYCVGP----TINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY---PNSVVHDVFWHVNDD-AIKIY--Y  402 (574)
T ss_dssp             EEEEEESC----EEECCSSCSEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC---TTCEEEEEEEEESSC-SEECC--S
T ss_pred             eeEEEECe----EEECCCCcEEeecCCCChhhEEEeeEeeCCCCCCCccCccc---CCEEEEeeEEECCCC-EEEEC--C
Confidence            45666553    45443   4677789999  999999886444448999884   899999999999988 68886  4


Q ss_pred             ceEEEeCceec-CCCce-eEecCCCCCCCCcceeEEEecceecCC
Q 017111          205 TDITVSRCHFS-SHDKT-MLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       205 ~~vTIS~n~f~-~h~k~-~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      .+|+|++|.+. .|.-+ +-+|++..    .-.+|+|.++.+.++
T Consensus       403 ~NI~I~nc~i~~g~g~g~IsIGS~~g----~V~NV~v~N~~i~~~  443 (574)
T 1ogo_X          403 SGASVSRATIWKCHNDPIIQMGWTSR----DISGVTIDTLNVIHT  443 (574)
T ss_dssp             TTCEEEEEEEEECSSSCSEECCSSCC----CEEEEEEEEEEEEEC
T ss_pred             ccEEEEeEEEECCCCCceEEEcCCCC----cEEEEEEEeEEEECC
Confidence            99999999986 45555 67787421    124788888877554

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=97.28  E-value=0.0032  Score=65.15  Aligned_cols=142  Identities=17%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEec-------CCCceEEEEceeeecCCCCc--------eEeee------CCc
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIK-------PKSKHIWIDRCSLRDYDDGL--------IDITR------EST  205 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~-------~~s~nVwIDHcs~s~~~Dgl--------idi~~------~s~  205 (377)
                      ++.+. ++++.|+|.+|++...  .|.+.+.       -.+++.-|+||.|....+.-        |.+..      .+.
T Consensus       120 ~iav~-G~~~~I~nn~I~~~~~--gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~  196 (506)
T 1dbg_A          120 LVAIY-GSYNRITACVFDCFDE--ANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGM  196 (506)
T ss_dssp             SEEEC-SSSCEEESCEEESCCS--SCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCC
T ss_pred             ceEEe-cCCeEEEeeEEEcCCC--CceeeEeecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccC
Confidence            34554 5888999999987532  1123331       12455568888887632211        22221      135


Q ss_pred             eEEEeCceecCCC------ceeEecCC-----CCCCC-------Ccc--------eeEEEecceecCCCCCCCccccC-e
Q 017111          206 DITVSRCHFSSHD------KTMLIGAD-----PSHVA-------DRC--------IRVTIHHCFFDGTRQRHPRVRYA-K  258 (377)
Q Consensus       206 ~vTIS~n~f~~h~------k~~LiG~~-----d~~~~-------d~~--------~~VT~hhNlf~~~~~R~Pr~r~G-~  258 (377)
                      +..|.+|+|....      ..+-+|.+     +..++       +..        -+.++.+|.|.++.. .=.++.+ .
T Consensus       197 ~~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~i~~N~~~~~~g-gi~l~~~~~  275 (506)
T 1dbg_A          197 YHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQG-TMNFRHGDH  275 (506)
T ss_dssp             CCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCEEESCEEESCSS-EEEEEECSS
T ss_pred             CeEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEEEECCEEEcccC-cEEEeecCc
Confidence            7777777776432      12223311     10000       000        025666666665433 2223443 3


Q ss_pred             eEEEcceEEcCc----cceeeecCCceEEEEceeEecCC
Q 017111          259 VHLYNNYTRNWG----IYAVCASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       259 ~hv~NN~~~n~~----~~ai~~~~~a~v~~e~N~F~~g~  293 (377)
                      ..|.+|++.+-+    ..++-. .++...+.+|||+.-.
T Consensus       276 s~I~~N~f~gN~~~~~~~Gi~i-~~~~~~I~nN~f~~~~  313 (506)
T 1dbg_A          276 QVAINNFYIGNDQRFGYGGMFV-WGSRHVIACNYFELSE  313 (506)
T ss_dssp             CEEESCEEEECSSSSCBCCEEE-CSBSCEEESCEEEESS
T ss_pred             cEEECCEEECCcCccCceEEEE-ECCCCEEECCEEECCc
Confidence            578888876543    223333 2334477889988754

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.20  E-value=0.0011  Score=64.99  Aligned_cols=104  Identities=14%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCce-EEEEceeeec----------CCCCceEeeeCCceEEEeCceecC
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKH-IWIDRCSLRD----------YDDGLIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~n-VwIDHcs~s~----------~~Dglidi~~~s~~vTIS~n~f~~  216 (377)
                      |.+..++ |.|++|+++....   ..|.+. .+++ |.|+++++..          ..|| ||+  .+++|+|++|.|..
T Consensus       100 i~~~~~~-v~i~giti~nsp~---~~i~i~-~~~n~v~i~~v~I~~~~~d~~~~~~NtDG-idi--~s~nV~I~n~~i~~  171 (335)
T 1k5c_A          100 FLKIKGS-GTYKKFEVLNSPA---QAISVG-PTDAHLTLDGITVDDFAGDTKNLGHNTDG-FDV--SANNVTIQNCIVKN  171 (335)
T ss_dssp             SEEEEEE-EEEESCEEESCSS---CCEEEE-EEEEEEEEESCEEECGGGGGGGCCCSCCS-EEE--ECSSEEEESCEEES
T ss_pred             EEEeceE-EEEEEEEEECCCc---ceEEEE-ccCCeEEEEEEEEECCCCcccccCCCCCe-Ecc--cCCeEEEEeeEEEc
Confidence            6777888 9999999998643   568886 7899 9999999964          3688 899  68999999999998


Q ss_pred             CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc----cC---eeEEEcceEEcC
Q 017111          217 HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR----YA---KVHLYNNYTRNW  269 (377)
Q Consensus       217 h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r----~G---~~hv~NN~~~n~  269 (377)
                      .+-+.-|+++        .+|++.++.+.....  =.+.    .+   .+.+.|+.+.+.
T Consensus       172 gDDcIaiksg--------~nI~i~n~~~~~ghG--isIGS~g~~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          172 QDDCIAINDG--------NNIRFENNQCSGGHG--ISIGSIATGKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             SSCSEEEEEE--------EEEEEESCEEESSCC--EEEEEECTTCEEEEEEEESCEEEEE
T ss_pred             CCCEEEeeCC--------eeEEEEEEEEECCcc--CeEeeccCCCCEEEEEEEeeEEECC
Confidence            7766666543        378998888765322  1221    12   357777777654

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=97.13  E-value=0.0032  Score=61.55  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeee-------CCceEEEeCceecCC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-------ESTDITVSRCHFSSH  217 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~-------~s~~vTIS~n~f~~h  217 (377)
                      ..||.+..++||.|+|.+|+.+    +|+|.|. .++||+|.+|.+..+. | |.+..       ...+|+|++|.|.+.
T Consensus       154 tDGid~~~s~nV~I~n~~i~~g----DDciaik-sg~nI~i~n~~~~~gh-G-isiGSlg~~~~~~v~nV~v~n~~~~~~  226 (339)
T 2iq7_A          154 TDAFDVGSSTGVYISGANVKNQ----DDCLAIN-SGTNITFTGGTCSGGH-G-LSIGSVGGRSDNTVKTVTISNSKIVNS  226 (339)
T ss_dssp             CCSEEEESCEEEEEESCEEECS----SCSEEES-SEEEEEEESCEEESSC-C-EEEEEESSSSCCEEEEEEEEEEEEESC
T ss_pred             CCcEEEcCcceEEEEecEEecC----CCEEEEc-CCccEEEEeEEEECCc-e-EEECcCCcccCCCEEEEEEEeeEEECC
Confidence            4579998899999999999864    6999997 6799999999999875 6 77733       257999999999987


Q ss_pred             CceeEec
Q 017111          218 DKTMLIG  224 (377)
Q Consensus       218 ~k~~LiG  224 (377)
                      ..++.|.
T Consensus       227 ~~girIk  233 (339)
T 2iq7_A          227 DNGVRIK  233 (339)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEE
Confidence            7666654

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.02  E-value=0.0028  Score=66.54  Aligned_cols=66  Identities=12%  Similarity=0.070  Sum_probs=55.0

Q ss_pred             eeccEEEeeeEEeCCCCCCCCceEecCCCceE--EEEceeee----cCCCCceEeeeCCceEEEeCceecCCCceeEecC
Q 017111          152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHI--WIDRCSLR----DYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA  225 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nV--wIDHcs~s----~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~  225 (377)
                      +++||.|++|+|+....   -.|.+. .+++|  .|+.++..    +..|| ||+.   ++|+|++|.|...+-+.-|++
T Consensus       331 ~c~NV~I~Giti~NSp~---w~i~~~-~c~nV~~~I~nv~i~~~~~~nTDG-IDi~---~NV~I~nc~I~~gDDcIaIks  402 (574)
T 1ogo_X          331 GGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEIY---PNSVVHDVFWHVNDDAIKIYY  402 (574)
T ss_dssp             SSEEEEEESCEEECCSS---CSEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBCC---TTCEEEEEEEEESSCSEECCS
T ss_pred             CceeEEEECeEEECCCC---cEEeec-CCCChhhEEEeeEeeCCCCCCCcc-Cccc---CCEEEEeeEEECCCCEEEECC
Confidence            79999999999998643   357776 78999  99999864    24899 8985   899999999998877887776

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=97.00  E-value=0.017  Score=60.89  Aligned_cols=86  Identities=21%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCC----CCceEeeeCCceEEEeCceecCCCceeEecCCCC
Q 017111          153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYD----DGLIDITRESTDITVSRCHFSSHDKTMLIGADPS  228 (377)
Q Consensus       153 a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~----Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~  228 (377)
                      ++||.|+|-+|+..   .+|+|.|. .++||+|.+|.+....    ..-|.+..++.+|||++|.|.+...+.-|-....
T Consensus       182 S~NV~I~Nc~I~~t---GDDcIaIk-sseNI~I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt~~GIrIKt~~~  257 (609)
T 3gq8_A          182 SENIWIENCEATGF---GDDGITTH-HSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGD  257 (609)
T ss_dssp             CEEEEEESCEEESC---SSCSEEEC-SCEEEEEESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESSSEEEEEEECTT
T ss_pred             ceeEEEEeeEEEec---CCCEEEec-CCeeEEEEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECCCCEEEEEecCC
Confidence            89999999999752   36999996 7999999999995431    2237776667899999999998887776643221


Q ss_pred             CCCCcceeEEEeccee
Q 017111          229 HVADRCIRVTIHHCFF  244 (377)
Q Consensus       229 ~~~d~~~~VT~hhNlf  244 (377)
                      .  ....+|.|.+|++
T Consensus       258 ~--~~v~NV~I~n~vs  271 (609)
T 3gq8_A          258 A--PAAYNISINGHMS  271 (609)
T ss_dssp             S--CCCEEEEEEEEEE
T ss_pred             C--CccccEEEECCEe
Confidence            1  0123677766644

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=96.89  E-value=0.0047  Score=64.43  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=57.7

Q ss_pred             EEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec-CCCce-eEecCCCCCCCCc
Q 017111          156 VIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS-SHDKT-MLIGADPSHVADR  233 (377)
Q Consensus       156 VIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~-~h~k~-~LiG~~d~~~~d~  233 (377)
                      |.|+|+++........|||.+.   +||.|++|.|..+.| +|.++.  .+|+|++|.+. .|.-+ +-||++.    +.
T Consensus       322 V~I~n~~i~~~~~~NTDGidi~---~nV~I~n~~i~~gDD-cIaIks--~NI~I~n~~~~~~~g~~~IsiGs~~----~~  391 (549)
T 1x0c_A          322 CRVDDYKQVGAFYGQTDGLEMY---PGTILQDVFYHTDDD-GLKMYY--SNVTARNIVMWKESVAPVVEFGWTP----RN  391 (549)
T ss_dssp             EEEEEEEEECCCBTTCCCCBCC---TTCEEEEEEEEESSC-CEECCS--SSEEEEEEEEEECSSSCSEECCBSC----CC
T ss_pred             EEEEeeEeEcCCCCCCCccccc---CCEEEEeeEEeCCCC-EEEECC--CCEEEEeeEEEcCCCCceEEECCCC----Cc
Confidence            7777777654333346777763   889999999998877 588864  89999999986 35444 5677642    12


Q ss_pred             ceeEEEecceecCCC
Q 017111          234 CIRVTIHHCFFDGTR  248 (377)
Q Consensus       234 ~~~VT~hhNlf~~~~  248 (377)
                      -.+|+|.++.+.++.
T Consensus       392 V~NV~v~n~~i~~s~  406 (549)
T 1x0c_A          392 TENVLFDNVDVIHQA  406 (549)
T ss_dssp             EEEEEEEEEEEEECC
T ss_pred             EEEEEEEeeEEECcc
Confidence            247888888876643

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=96.86  E-value=0.016  Score=56.37  Aligned_cols=112  Identities=10%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEee------eCCceEEEeCceecCC-C
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT------RESTDITVSRCHFSSH-D  218 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~------~~s~~vTIS~n~f~~h-~  218 (377)
                      .||.+..+++++|++=++...   ..|||.+...+++++|.+|.+....|+.+-+.      ..+.+++|++|.+.+. .
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~---~~~GI~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~  249 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYAN---DRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAR  249 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESC---SSCSEEEETTCEEEEEESCEEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSS
T ss_pred             CceeEeccCCcEEECcEEEcc---ccCcEEEEeccCCeEEECCEEECccCceEEEeccccCCCCCccEEEECCEEEcCcc
Confidence            467777777777776544332   25888875348899999999988777755431      3467888988887642 3


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEc
Q 017111          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRN  268 (377)
Q Consensus       219 k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n  268 (377)
                      .+.++-.        ...+++.+|.|.++....=++.. -.+.+.||.+.+
T Consensus       250 ~Gi~~~~--------~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~  292 (377)
T 2pyg_A          250 EGVLLKM--------TSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHD  292 (377)
T ss_dssp             CSEEEEE--------EEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEES
T ss_pred             CceEecc--------ccCeEEECCEEECCCCceEEEecCCCcEEECcEEEC
Confidence            3443321        12577777777766433333332 235677777664

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=96.80  E-value=0.0037  Score=65.24  Aligned_cols=63  Identities=8%  Similarity=0.178  Sum_probs=36.6

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCc-eEee---eCCceEEEeCceecC
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL-IDIT---RESTDITVSRCHFSS  216 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-idi~---~~s~~vTIS~n~f~~  216 (377)
                      .||.+.  +||.|+|..|+.+    +|+|.|.  ++||.|.+|.+.....+. |.+.   ....+|+|++|.|.+
T Consensus       338 DGidi~--~nV~I~n~~i~~g----DDcIaIk--s~NI~I~n~~~~~~~g~~~IsiGs~~~~V~NV~v~n~~i~~  404 (549)
T 1x0c_A          338 DGLEMY--PGTILQDVFYHTD----DDGLKMY--YSNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIH  404 (549)
T ss_dssp             CCCBCC--TTCEEEEEEEEES----SCCEECC--SSSEEEEEEEEEECSSSCSEECCBSCCCEEEEEEEEEEEEE
T ss_pred             Cccccc--CCEEEEeeEEeCC----CCEEEEC--CCCEEEEeeEEEcCCCCceEEECCCCCcEEEEEEEeeEEEC
Confidence            345554  6777777777654    4667664  367777777765544433 4442   123567777776654

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=96.66  E-value=0.0076  Score=60.58  Aligned_cols=84  Identities=12%  Similarity=0.185  Sum_probs=44.1

Q ss_pred             cCcceeec-----ccceEEeCCcEEEee-eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeC
Q 017111          130 SYKTIDGR-----GQRVKLTGKGLRLKE-CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE  203 (377)
Q Consensus       130 sn~TI~G~-----G~g~~I~G~gl~i~~-a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~  203 (377)
                      +++||.|.     |...+-...||.+.. ++++.|+|++|...    .=||.++ +++++.|.+|.+..+..+ |.++.+
T Consensus       141 ~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~----~fGI~l~-~a~~~~I~~N~I~e~GNg-I~L~G~  214 (410)
T 2inu_A          141 RDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYL----EHALIVR-GADALRVNDNMIAECGNC-VELTGA  214 (410)
T ss_dssp             ESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESC----SEEEEET-TEESCEEESCEEESSSEE-EEECSC
T ss_pred             CCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecc----cEEEEEc-cCCCcEEECCEEEecCCc-eeeccc
Confidence            36777776     544333344676753 67777888887753    2345554 455555555555544444 444332


Q ss_pred             CceEEEeCceecCCCc
Q 017111          204 STDITVSRCHFSSHDK  219 (377)
Q Consensus       204 s~~vTIS~n~f~~h~k  219 (377)
                      +...-|.+|.+.....
T Consensus       215 ~~~~~I~~N~i~~~~d  230 (410)
T 2inu_A          215 GQATIVSGNHMGAGPD  230 (410)
T ss_dssp             EESCEEESCEEECCTT
T ss_pred             cccceEecceeeecCC
Confidence            3344444444444333

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=96.63  E-value=0.021  Score=55.90  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             CCcEEEe-----eeccEEEeeeEEeCCC----C---CCCC-ceEecCCCceEEEEceeeecCCCCceEeeeC------Cc
Q 017111          145 GKGLRLK-----ECEHVIICNLEFEGGK----G---PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRE------ST  205 (377)
Q Consensus       145 G~gl~i~-----~a~NVIIRnL~ir~g~----~---~~~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~------s~  205 (377)
                      +.+|.|.     .++||+|.|..|..+.    .   .-.| .|.+..++++|-|-+|-|.+....+|--..+      ..
T Consensus       113 ~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~  192 (330)
T 2qy1_A          113 ADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAA  192 (330)
T ss_dssp             CCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGC
T ss_pred             CcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCc
Confidence            4568887     5999999999997542    1   1124 3566557899999999998754444422111      15


Q ss_pred             eEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccceeeec---CCc
Q 017111          206 DITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCAS---VDS  280 (377)
Q Consensus       206 ~vTIS~n~f~~h~k-~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~~~---~~a  280 (377)
                      .||+-+|+|.+... .-++..         -.+-+.+|+|.+.....--.+. +++-+.||||.+... .+...   ...
T Consensus       193 ~vT~h~N~f~~~~~R~Pr~r~---------G~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~g  262 (330)
T 2qy1_A          193 RTTYHHNRFENVESRVPLQRF---------GLSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKN-PVTSRDSSEIG  262 (330)
T ss_dssp             EEEEESCEEEEEEECTTEEES---------SEEEEESCEEEEECSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSBC
T ss_pred             eEEEECcEEcCCCCCCCceec---------ceEEEEeeEEEcccceEeccCCCcEEEEEccEEECCCC-ceeeccCCCce
Confidence            89999999974321 112211         1466889999887665544443 578999999987532 22211   223


Q ss_pred             eEEEEceeEec
Q 017111          281 QIYSQCNIYEA  291 (377)
Q Consensus       281 ~v~~e~N~F~~  291 (377)
                      ....++| |..
T Consensus       263 ~~~~~~n-~~~  272 (330)
T 2qy1_A          263 YWDLINN-YVG  272 (330)
T ss_dssp             EEEEESC-EEC
T ss_pred             eEEEeCC-ccc
Confidence            4566788 554

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=96.45  E-value=0.098  Score=51.64  Aligned_cols=147  Identities=20%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             CceEecCCCceEEEEceeeecCCC---------------CceEeeeCCceEEEeCceecC-----CCceeEecCC----C
Q 017111          172 DAIQIKPKSKHIWIDRCSLRDYDD---------------GLIDITRESTDITVSRCHFSS-----HDKTMLIGAD----P  227 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s~~~D---------------glidi~~~s~~vTIS~n~f~~-----h~k~~LiG~~----d  227 (377)
                      .+|.|. +++||+|.+..|....|               ..|.+ .++++|-|-.|.|+.     .....++|..    |
T Consensus        96 ~gl~i~-~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i-~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~D  173 (355)
T 1pcl_A           96 GSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHD  173 (355)
T ss_pred             CEEEEe-cCCeEEEeeeEEEcCcccccccccccCccccCceEEe-cCCCcEEEEeeEEeccccCccccccccCccccccc
Confidence            467775 78999999999985321               13666 457777666666653     2222344432    1


Q ss_pred             CC--CCCcceeEEEecceecCCCCCCCcccc---------C--eeEEEcceEEcCccceeeecCCceEEEEceeEecCCc
Q 017111          228 SH--VADRCIRVTIHHCFFDGTRQRHPRVRY---------A--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK  294 (377)
Q Consensus       228 ~~--~~d~~~~VT~hhNlf~~~~~R~Pr~r~---------G--~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~  294 (377)
                      ..  .....-.||+-+|+|.++.. .=++..         |  ++.+.+|+|.+.....-..+. ..+.+.||||.+...
T Consensus       174 gl~Di~~~s~~VTiS~n~f~~h~k-~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~-G~~Hv~NN~~~~~~~  251 (355)
T 1pcl_A          174 GALDIKKGSDYVTISYSRFELHDK-TILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF-GSIHAYNNVYLGDVK  251 (355)
T ss_pred             cceeeecCCCcEEEEeeEEcCCCc-eEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec-ceEEEEcceEEcccC
Confidence            11  11112489999999987542 111110         2  589999999887654433332 357888999976532


Q ss_pred             cceeeeeccccCCcccCCCceEEecCCeeecc
Q 017111          295 KMAFKYLTEKASDKEEARTDCIRSEGDLSSLK  326 (377)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng  326 (377)
                      ..++.+...    ........+..++|.|.++
T Consensus       252 ~~~~~~~ya----~g~~~~~~i~~e~N~F~~~  279 (355)
T 1pcl_A          252 HSVYPYLYS----FGLGTSGSILSESNSFTLS  279 (355)
T ss_pred             CCccccceE----ecCCCCcEEEEEccEEECC
Confidence            211000000    0112344677889999887

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=96.44  E-value=0.027  Score=56.51  Aligned_cols=137  Identities=17%  Similarity=0.225  Sum_probs=84.5

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCC-------------CC-ceEecCCCceEEEEceeeecCCCCceEeeeCC------
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPD-------------VD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRES------  204 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~-------------~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s------  204 (377)
                      +..|.|.+++||+|.|..|..+...+             .| .|.+..++++|-|-.|-|.+...++|--..++      
T Consensus       183 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  262 (399)
T 2o04_A          183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTT
T ss_pred             CCeEEecCCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccC
Confidence            46789989999999999999763211             23 34555578999999999987554444322111      


Q ss_pred             -ceEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCC--C-----ccc-cCeeEEEcceEEcCccce-
Q 017111          205 -TDITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--P-----RVR-YAKVHLYNNYTRNWGIYA-  273 (377)
Q Consensus       205 -~~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--P-----r~r-~G~~hv~NN~~~n~~~~a-  273 (377)
                       -.||+-+|+|.+.. +.=.+..         -.+-+.+|+|.+.....  |     -.+ .+++-+.||||.+..... 
T Consensus       263 ~~~vT~h~N~f~~~~~R~Pr~R~---------G~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~  333 (399)
T 2o04_A          263 KLKITLHHNRYKNIVQAAPRVRF---------GQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAA  333 (399)
T ss_dssp             CCCEEEESCEEEEEEECTTEESS---------CEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSG
T ss_pred             ceeEEEECcEecCCcccCCCccc---------ceEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEECCCCCcc
Confidence             27999999997432 1111211         14677899997664311  0     111 257899999999853211 


Q ss_pred             -eeec--CCceEEEEceeEe
Q 017111          274 -VCAS--VDSQIYSQCNIYE  290 (377)
Q Consensus       274 -i~~~--~~a~v~~e~N~F~  290 (377)
                       +...  .+..+...+|+|.
T Consensus       334 ~~~~~~s~~~~~~~~gn~~~  353 (399)
T 2o04_A          334 KTISVFSGGTALYDSGTLLN  353 (399)
T ss_dssp             GGEEECTTCCBCEEESCEET
T ss_pred             ceeeeccCCceEEEeCceec
Confidence             1111  2344566788875

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=96.42  E-value=0.016  Score=57.18  Aligned_cols=136  Identities=14%  Similarity=0.099  Sum_probs=85.4

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCC---------CCCCc-eEecCCCceEEEEceeeecCCCCceEeeeCC---ceEEEeC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKG---------PDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRES---TDITVSR  211 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~---------~~~Da-I~i~~~s~nVwIDHcs~s~~~Dglidi~~~s---~~vTIS~  211 (377)
                      +..|.|.+++||+|.|..|..+..         ...|+ |.+..++++|-|.+|-|.+....+|.-..++   .+||+-+
T Consensus       130 ~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g~~vT~hh  209 (353)
T 1air_A          130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCCCEEEEES
T ss_pred             CCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCCceEEEEc
Confidence            356888889999999999986421         01244 4554478999999999986544443221111   4799999


Q ss_pred             ceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccceeeec----CCceEEEE
Q 017111          212 CHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCAS----VDSQIYSQ  285 (377)
Q Consensus       212 n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~~~----~~a~v~~e  285 (377)
                      |+|.++. +.-++..         -.+-+.+|+|.+...+.-..+. +++-+.||||.+... .+..+    ........
T Consensus       210 N~f~~~~~R~Pr~r~---------G~~Hv~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~~g~~~~~  279 (353)
T 1air_A          210 NYYNDVNARLPLQRG---------GLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAIN-PVTSRYDGKNFGTWVLK  279 (353)
T ss_dssp             CEEEEEEECSCEEES---------SEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSSCCEEEEE
T ss_pred             eEEcCCcCCCCCCcC---------ceEEEEccEEECCCCceeccCCCcEEEEEceEEECCCC-ceEecCCCCCCceeEec
Confidence            9997532 1112221         1466789999887665433443 578999999987532 22222    12344455


Q ss_pred             ceeEe
Q 017111          286 CNIYE  290 (377)
Q Consensus       286 ~N~F~  290 (377)
                      +|.|.
T Consensus       280 ~n~~~  284 (353)
T 1air_A          280 GNNIT  284 (353)
T ss_dssp             SCSCC
T ss_pred             ccccc
Confidence            66654

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=96.29  E-value=0.013  Score=57.79  Aligned_cols=72  Identities=14%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeee-------CCceEEEeCceecCC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-------ESTDITVSRCHFSSH  217 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~-------~s~~vTIS~n~f~~h  217 (377)
                      ..||.+..++||.|+|-.|+.+    +|+|.|. .++||+|.+|.+..+. | |.+..       ...+|+|++|.|.+.
T Consensus       179 tDGidi~~s~nV~I~n~~i~~g----DDcIaik-sg~nI~i~n~~~~~gh-G-isiGS~G~~~~~~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          179 TDAFDVGNSVGVNIIKPWVHNQ----DDCLAVN-SGENIWFTGGTCIGGH-G-LSIGSVGDRSNNVVKNVTIEHSTVSNS  251 (362)
T ss_dssp             CCSEEECSCEEEEEESCEEECS----SCSEEES-SEEEEEEESCEEESSC-C-EEEEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             CCceeecCcceEEEEeeEEecC----CCEEEEe-CCeEEEEEEEEEeCCc-e-eEEeeccccCCCCEEEEEEEeeEEECC
Confidence            4579998899999999999965    6999997 5799999999999865 5 67733       146899999999876


Q ss_pred             CceeEe
Q 017111          218 DKTMLI  223 (377)
Q Consensus       218 ~k~~Li  223 (377)
                      ..++-|
T Consensus       252 ~~GirI  257 (362)
T 1czf_A          252 ENAVRI  257 (362)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            655544

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=96.18  E-value=0.041  Score=55.55  Aligned_cols=138  Identities=16%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCC-------------CCc-eEecCCCceEEEEceeeecCCCCceEeeeCC------
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPD-------------VDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRES------  204 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~-------------~Da-I~i~~~s~nVwIDHcs~s~~~Dglidi~~~s------  204 (377)
                      +.+|.|.+++||+|.|..|..+...+             .|+ |.+..++++|-|-.|-|.+....+|--..++      
T Consensus       189 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  268 (416)
T 1vbl_A          189 YDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSG  268 (416)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEESSCEEEEEESCEEEEEEECCEECSCTTCGGGTT
T ss_pred             CceEEecCCceEEEEccEEecCCCcccccccccCcceeecccceeeecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCC
Confidence            46789999999999999999753111             243 4455568999999999987554444322121      


Q ss_pred             -ceEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCC-C-cc----c-cCeeEEEcceEEcCcc--ce
Q 017111          205 -TDITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH-P-RV----R-YAKVHLYNNYTRNWGI--YA  273 (377)
Q Consensus       205 -~~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~-P-r~----r-~G~~hv~NN~~~n~~~--~a  273 (377)
                       -.||+-+|+|.+.. +.=.+-.         -.+-+.+|+|.+..... + .+    + .+++-+.||||.....  ..
T Consensus       269 ~~~VT~hhN~f~~~~~R~Pr~R~---------G~~Hv~NN~~~n~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~  339 (416)
T 1vbl_A          269 HLRVTLHHNYYKNVTQRLPRVRF---------GQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPS  339 (416)
T ss_dssp             CCCEEEESCEEEEEEECSSEESS---------CEEEEESCEEEECTTSSSCCCCSEEEETTCEEEEESCEEEESSCCCGG
T ss_pred             ceEEEEECcEecCCccCCccccc---------ceEEEEcceEECCCCCcccceeEeccCCCcEEEEECCEEECCCCCCcc
Confidence             26999999997432 1111211         14667899997654310 0 01    1 2578999999986421  11


Q ss_pred             -eee---cCCceEEEEceeEec
Q 017111          274 -VCA---SVDSQIYSQCNIYEA  291 (377)
Q Consensus       274 -i~~---~~~a~v~~e~N~F~~  291 (377)
                       +..   ..++.+...+|+|..
T Consensus       340 ~~~~~~~~~~~~~~~~gn~~~~  361 (416)
T 1vbl_A          340 LIIKVWSKNEESMYETGTIVDL  361 (416)
T ss_dssp             GSEEEECSSCCEEEEESCEEEE
T ss_pred             ceeeeeccCCceEEecCCEEee
Confidence             111   145567778999963

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=96.03  E-value=0.041  Score=55.58  Aligned_cols=112  Identities=13%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeecccc---eEEe-------------------C---
Q 017111           99 SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQR---VKLT-------------------G---  145 (377)
Q Consensus        99 SLr~Ai~~~-----~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g---~~I~-------------------G---  145 (377)
                      ++++||++.     ..|++|+--.|+++  +.|.|.   +++||+|.|.+   ++|.                   |   
T Consensus        91 TIqeAVdaap~~~~~~r~vI~Ik~GvY~--E~V~Ip~~K~~ItL~G~G~~~t~Iti~~~~~~~~~~~d~~~~~n~~G~~~  168 (422)
T 3grh_A           91 TIQAAVDAAIIKRTNKRQYIAVMPGEYQ--GTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYM  168 (422)
T ss_dssp             SHHHHHHHHHTTCCSSCEEEEECSEEEE--SCEEECCCSSCEEEEECSSSGGGEEEEECCCTTSCHHHHHHHHCGGGSSC
T ss_pred             CHHHHHHhchhcCCCccEEEEEeCCeEe--eeEEecCCCCcEEEEeccCCCceEEEeecccccccccccccccccccccc
Confidence            799998752     23555655679884  568884   79999998753   4442                   0   


Q ss_pred             -----------------C--------cEEEeeeccEEEeeeEEeCCCCC-------CCCceEecCCCceEEEEceeeecC
Q 017111          146 -----------------K--------GLRLKECEHVIICNLEFEGGKGP-------DVDAIQIKPKSKHIWIDRCSLRDY  193 (377)
Q Consensus       146 -----------------~--------gl~i~~a~NVIIRnL~ir~g~~~-------~~DaI~i~~~s~nVwIDHcs~s~~  193 (377)
                                       .        .|.+ .+++++++||+|+...+.       ..-|+.+  .++++.+.+|.|.-.
T Consensus       169 ~G~~aw~tf~~~~~~~sat~gT~~SAT~~V-~g~~F~a~niTf~Ntag~~~~~~~~QAVAL~v--~gDr~~fy~C~f~G~  245 (422)
T 3grh_A          169 PGKPAWYMYDSCQSKRSDSIGVLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDQVQINNVNILGR  245 (422)
T ss_dssp             TTSTTHHHHHHHHTCCSSSCCGGGCCSEEE-CCTTCEEEEEEEEETTGGGSCSSCCCCCSEEE--CCSSEEEEEEEEECS
T ss_pred             cCccccccccccccccccceeccceEEEEE-ECCCEEEEeeEEEeCCCCCCCCCCCceEEEEe--cCCcEEEEeeEEEee
Confidence                             0        1334 379999999999975321       1345555  478899999999988


Q ss_pred             CCCceEee---------eCCceEEEeCceec
Q 017111          194 DDGLIDIT---------RESTDITVSRCHFS  215 (377)
Q Consensus       194 ~Dglidi~---------~~s~~vTIS~n~f~  215 (377)
                      .|=|+--.         .....--+.+|.|.
T Consensus       246 QDTLy~~~~~~~~~~~~d~~gRqyy~~CyIe  276 (422)
T 3grh_A          246 QNTFFVTNSGVQNRLETNRQPRTLVTNSYIE  276 (422)
T ss_dssp             TTCEEECCCCTTCSCCSSCCCEEEEESCEEE
T ss_pred             cceeeeccccccccccccccccEEEEecEEe
Confidence            88866321         12345566777776

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=95.98  E-value=0.09  Score=52.61  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             ceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCc-------------eeEecCCCCCCCCcceeEEEecceecCC
Q 017111          181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-------------TMLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       181 ~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k-------------~~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      ....|.+|.+.+..|.-||+......|||.+|...+..+             ++-+|+..     ...+.++.+|+..++
T Consensus       194 ~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnGf~lgg~~-----~~~~~~v~nn~a~~N  268 (400)
T 1ru4_A          194 PGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQ-----AVGNHRITRSVAFGN  268 (400)
T ss_dssp             SCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCSEECCCTT-----CCCCCEEESCEEESC
T ss_pred             CCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCCEEEeccC-----CcCCEEEEeeEEECC
Confidence            344455666555444446665445567888887654322             11111110     012466777776665


Q ss_pred             CCCCCcccc--CeeEEEcceEEcCccceeeecCCc----eEEEEceeEecCC
Q 017111          248 RQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDS----QIYSQCNIYEAGQ  293 (377)
Q Consensus       248 ~~R~Pr~r~--G~~hv~NN~~~n~~~~ai~~~~~a----~v~~e~N~F~~g~  293 (377)
                      ...-=....  +.+.|.||..++.+ .++......    +..+++|++....
T Consensus       269 ~~~G~~~n~~~~~~~i~nNt~~~N~-~~~~~~~~~~~~~~~~~~nNi~~~~~  319 (400)
T 1ru4_A          269 VSKGFDQNNNAGGVTVINNTSYKNG-INYGFGSNVQSGQKHYFRNNVSLSAS  319 (400)
T ss_dssp             SSEEEECTTCSSCCEEESCEEESSS-EEEEECSCCCTTCCEEEESCEEESSC
T ss_pred             cCcCEeecCCCCCEEEECeEEECCc-cceEEecCCCcccceEEEccEEEccc
Confidence            443222222  45789999777665 555544432    5567888887754

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=95.47  E-value=0.07  Score=56.08  Aligned_cols=101  Identities=11%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             eeeccEEEeeeE----EeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEe-eeCCc-eEEEeCceecCCCceeEec
Q 017111          151 KECEHVIICNLE----FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI-TREST-DITVSRCHFSSHDKTMLIG  224 (377)
Q Consensus       151 ~~a~NVIIRnL~----ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi-~~~s~-~vTIS~n~f~~h~k~~LiG  224 (377)
                      ..++||+|+||+    |..  ....|||        |+|.+|.|..+ |.+|.+ +.+.. +++++.| ...| -++-||
T Consensus       207 ~~c~NVtI~nvtfi~aI~s--spNTDGI--------V~I~nc~I~tG-DDCIAI~KSGs~~ni~~e~~-~~GH-gGISIG  273 (600)
T 2x6w_A          207 GYGSNCYVRKCRFINLVNS--SVNADHS--------TVYVNCPYSGV-ESCYFSMSSSFARNIACSVQ-LHQH-DTFYRG  273 (600)
T ss_dssp             TBEEEEEEESCEEECCCCC--SSCCCEE--------EEEECSSSEEE-ESCEEECCCTTHHHHEEEEE-ECSS-SEEEES
T ss_pred             CCcccEEEeCeEEcceEec--CCCCCEE--------EEEEeeEEecC-CcEEEEecCCCcCCeEEEEE-cCCC-CcEEec
Confidence            446666666666    444  2334665        67777777654 444777 65543 2455411 1122 245555


Q ss_pred             CCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCc
Q 017111          225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG  270 (377)
Q Consensus       225 ~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~  270 (377)
                      +..   ...-.+|++.+ .+..+..|...++  .+++.|....+..
T Consensus       274 Se~---~ggV~NV~V~N-rIKt~~G~GG~V~--NItfeNI~m~nV~  313 (600)
T 2x6w_A          274 STV---NGYCRGAYVVM-HAAEAAGAGSYAY--NMQVENNIAVIYG  313 (600)
T ss_dssp             CEE---EEESEEEEEEE-CGGGCTTTCSEEE--EEEEESCEEEESS
T ss_pred             ccc---cCcEEEEEEEE-EEEeecCCCceEE--EEEEEEEEEEccc
Confidence            421   11123677766 5655555444443  3455555555543

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=95.08  E-value=0.11  Score=53.03  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=63.9

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCc-eEecCCCceEEEEceeeecCCCCceEeeeC-----------CceEEEeCce
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCH  213 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~Da-I~i~~~s~nVwIDHcs~s~~~Dglidi~~~-----------s~~vTIS~n~  213 (377)
                      .|+.+ .++||.|+|++|..+.  +.+| +.. ..++||.|+.|.|.. ..+ |.++.+           ..+|++++|.
T Consensus       168 DGi~i-~s~nV~I~n~~I~~gd--dgiGs~~~-~~~~NV~V~n~~~~g-g~G-IrIktg~d~IG~~~~g~v~NI~~~Ni~  241 (464)
T 1h80_A          168 NGRLH-WSRNGIIERIKQNNAL--FGYGLIQT-YGADNILFRNLHSEG-GIA-LRMETDNLLMKNYKQGGIRNIFADNIR  241 (464)
T ss_dssp             TTEEE-EEEEEEEEEEEEESCC--TTCEEEEE-SEEEEEEEEEEEEES-SEE-EEEECCCHHHHHHTCCEEEEEEEEEEE
T ss_pred             CCcee-eccCEEEeceEEecCC--CeEEeccc-CCEeEEEEEeeEEEC-CCE-EEEEeCCceeccCCCCcEEEEEEEeEE
Confidence            35566 5899999999999873  3445 344 378999999999887 333 444332           5799999999


Q ss_pred             ecCCCceeEecCCCCCCCCcceeEEEecceecC
Q 017111          214 FSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       214 f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~  246 (377)
                      |.+-..++.|+......    .+|+|-+-...+
T Consensus       242 ~~nv~~~I~I~p~~~~i----snItfeNI~~t~  270 (464)
T 1h80_A          242 CSKGLAAVMFGPHFMKN----GDVQVTNVSSVS  270 (464)
T ss_dssp             EESSSEEEEEECTTCBC----CCEEEEEEEEES
T ss_pred             EECCceeEEEeCCCceE----eEEEEEEEEEEc
Confidence            99988888888432111    257776655554

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=94.84  E-value=0.31  Score=48.21  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=73.5

Q ss_pred             CCcEEEee-eccEEEeeeEEeCCCCC-------------CCC-ceEecCCCceEEEEceeeecCCCCceEeeeCC-----
Q 017111          145 GKGLRLKE-CEHVIICNLEFEGGKGP-------------DVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRES-----  204 (377)
Q Consensus       145 G~gl~i~~-a~NVIIRnL~ir~g~~~-------------~~D-aI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s-----  204 (377)
                      +.+|.|.+ ++||+|.|..|..+...             -.| .|.+..++++|-|-.|-|.+....+|--..++     
T Consensus       143 ~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d  222 (361)
T 1pe9_A          143 WDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQD  222 (361)
T ss_dssp             CCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHH
T ss_pred             CceEEeecCCceEEEEccEeecccccccccccccCcceeeccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccc
Confidence            56799998 99999999999975311             024 35565578999999999987554444322221     


Q ss_pred             ---ceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCC--C-----ccc-cCeeEEEcceEEcC
Q 017111          205 ---TDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--P-----RVR-YAKVHLYNNYTRNW  269 (377)
Q Consensus       205 ---~~vTIS~n~f~~h~k-~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--P-----r~r-~G~~hv~NN~~~n~  269 (377)
                         -.||+-+|+|.+... .=++..         -.+-+.+|+|.+.....  |     .++ .+++-+.||||.+.
T Consensus       223 ~g~~~vT~hhN~f~~~~~R~Pr~R~---------G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~  290 (361)
T 1pe9_A          223 KGKLHVTLFNNVFNRVTERAPRVRY---------GSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             TTCCEEEEESCEEEEEEECSSEESS---------CEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEE
T ss_pred             cCcceEEEECeEEcCccccCccccc---------ceEEEEcceEecccCCCccccceEecCCCCcEEEEECCEEECC
Confidence               269999999964311 111111         14667889995432110  0     111 25789999999875

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=93.91  E-value=0.33  Score=52.24  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             hHHHhhhcC------------CCeEEEEEeceEEEecceeEeccCcceeeccc
Q 017111           99 SLREGCRMK------------EPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQ  139 (377)
Q Consensus        99 SLr~Ai~~~------------~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~  139 (377)
                      .|++|+++.            .|.+|+| ..|+..+++.|.+.+++.|+|.+.
T Consensus        68 Aiq~Ai~~a~~~Gggc~~st~~~~~V~~-P~GtYlvs~tI~l~~~t~L~G~~~  119 (758)
T 3eqn_A           68 AIQAAINAGGRCGQGCDSTTTQPALVYF-PPGTYKVSSPLVVLYQTQLIGDAK  119 (758)
T ss_dssp             HHHHHHHTTSCSCTTCCCCSSSCEEEEE-CSSEEEESSCEECCTTEEEEECSS
T ss_pred             HHHHHHHHhhhcccccccccccceEEEE-CCceEEEcccEEccCCeEEEecCC
Confidence            488887652            2355554 679988888899989999999854

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=93.85  E-value=0.57  Score=47.76  Aligned_cols=162  Identities=13%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             hHHHhhhc----CCCeEEEEEece----EEEecceeEeccCcceeecccceEEe----CCc-EEEee----eccEEEeee
Q 017111           99 SLREGCRM----KEPLWIVFEVSG----TIHLRSHLSVSSYKTIDGRGQRVKLT----GKG-LRLKE----CEHVIICNL  161 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG----~I~l~~~l~V~sn~TI~G~G~g~~I~----G~g-l~i~~----a~NVIIRnL  161 (377)
                      .|++|+++    .++.+|+| ..|    +..+...|.+.++++|.|.+....+.    ..| +....    -...-++||
T Consensus        70 AIQkAIdaA~a~~GGGtVyV-PaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~I~GtIia~~y~s~I~~~~VeNI  148 (514)
T 2vbk_A           70 AIQNAIDAVASLPSGGELFI-PASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNI  148 (514)
T ss_dssp             HHHHHHHHHHTSTTCEEEEC-CCCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTTCCSEEEEECCCSCCSCEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEE-CCCCcceeEEECCeEEecCCeEEEEecCceEeeccccccccEEeccCCccccccCceEE
Confidence            47777763    25666655 668    77778888889999999985432211    111 21100    012336788


Q ss_pred             EEeCCCCCCCCceEecC-------------CCceEEEEceeee------c-----------CCCCceEeeeCCceEEEeC
Q 017111          162 EFEGGKGPDVDAIQIKP-------------KSKHIWIDRCSLR------D-----------YDDGLIDITRESTDITVSR  211 (377)
Q Consensus       162 ~ir~g~~~~~DaI~i~~-------------~s~nVwIDHcs~s------~-----------~~Dglidi~~~s~~vTIS~  211 (377)
                      +|.+...  .||+...-             ..++|-|..|+..      |           +.+ .|++.....+|.|++
T Consensus       149 aITG~GT--IDG~g~n~t~e~~~~Rq~~~~~fdnV~Vn~Vt~~v~~Sg~WTIhPi~Cqnvt~r~-gL~f~eSCrNV~Isn  225 (514)
T 2vbk_A          149 RVTGNNT--CNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRV-GLHFLGQCVSVSVSS  225 (514)
T ss_dssp             EEECCSS--SEEEEESCCTTCSSCCCEESEEEESCEEEEEEEEEEEESEEEEEEESCEEEEEEE-EEEEESCCEEEEEES
T ss_pred             EEECCCe--EeCCCCCccccceeeeccceEEeeeEEEEeEEEeEeccCcEEEeEeccCceeccc-CccccCCCCeEEEec
Confidence            8887431  12211100             0234445555321      2           222 467766678999999


Q ss_pred             ceecCCC-------------------------ceeEecCCCCCCCCccee-EEEecceecCCCCCCCccccCeeEEEcce
Q 017111          212 CHFSSHD-------------------------KTMLIGADPSHVADRCIR-VTIHHCFFDGTRQRHPRVRYAKVHLYNNY  265 (377)
Q Consensus       212 n~f~~h~-------------------------k~~LiG~~d~~~~d~~~~-VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~  265 (377)
                      |+|+-.+                         -+..||+....  -+-.+ |++|.|+|.++.+-.-.+-.....+.-|+
T Consensus       226 C~FsVGDdciaiksGk~~~~~~~~~~se~~~hgav~igSE~m~--~Gvk~~v~v~~Clf~~td~~~~~~~~~~~~~~~~~  303 (514)
T 2vbk_A          226 CHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMC--IGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENV  303 (514)
T ss_dssp             CEEECTTSCCTTCEEEEEECBCCTTTSSCBCCEEEEEESSEEE--ESCSEEEEESCCEEEEEESEEEEEESSEEEEESCC
T ss_pred             cEEecCcceeeeecCceecccccCCcchhcccccEEECchhhc--ccccccEEEEeeeccCCccccccccCCcceEEEec
Confidence            9997211                         13444543110  01135 89999999999986544433334455554


Q ss_pred             E
Q 017111          266 T  266 (377)
Q Consensus       266 ~  266 (377)
                      -
T Consensus       304 ~  304 (514)
T 2vbk_A          304 N  304 (514)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=82.91  E-value=4.1  Score=42.84  Aligned_cols=55  Identities=15%  Similarity=0.368  Sum_probs=42.1

Q ss_pred             EeeeEEeCC-CCCCCCceEe---cCCCceEEEEcee----eec--CCCCceEeeeCCceEEEeCceecCCCceeEe-cC
Q 017111          158 ICNLEFEGG-KGPDVDAIQI---KPKSKHIWIDRCS----LRD--YDDGLIDITRESTDITVSRCHFSSHDKTMLI-GA  225 (377)
Q Consensus       158 IRnL~ir~g-~~~~~DaI~i---~~~s~nVwIDHcs----~s~--~~Dglidi~~~s~~vTIS~n~f~~h~k~~Li-G~  225 (377)
                      |++|+|+.. ..   -.|.+   . .++||.|++|+    +..  ..||.         |+|++|.|..-+-+.-| .+
T Consensus       187 I~GITi~NSDP~---w~I~iG~~~-~c~NVtI~nvtfi~aI~sspNTDGI---------V~I~nc~I~tGDDCIAI~KS  252 (600)
T 2x6w_A          187 VTGITFQNGDVT---WAITLGWNG-YGSNCYVRKCRFINLVNSSVNADHS---------TVYVNCPYSGVESCYFSMSS  252 (600)
T ss_dssp             EESCEEESCCCS---CSEEECBTT-BEEEEEEESCEEECCCCCSSCCCEE---------EEEECSSSEEEESCEEECCC
T ss_pred             EeCeEEECCCCc---cEEEeCCCC-CcccEEEeCeEEcceEecCCCCCEE---------EEEEeeEEecCCcEEEEecC
Confidence            899999986 33   35667   6 78999999999    443  46773         99999999977777777 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d1pxza_	346	b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark	1e-84
d1qcxa_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	1e-60
d1idka_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	5e-57
d1pe9a_	361	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	4e-56
d1bn8a_	399	b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta	1e-48
d1o88a_	353	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	2e-45

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  258 bits (661), Expect = 1e-84
 Identities = 97/309 (31%), Positives = 142/309 (45%), Gaps = 26/309 (8%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
             LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I
Sbjct: 19  MKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNI 78

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVIICNLEFEGGKGPDVDAIQIKP 178
            L+  L V+ +KTIDGRG  V L   G  L +++  HVI+ +L   G     +  + +  
Sbjct: 79  KLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSE 138

Query: 179 K------------------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
                                + WID  SL D  DGLID+T  ST IT+S  HF +H K 
Sbjct: 139 SIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKV 198

Query: 221 MLIGADPSHVADRCIRVTIHHC-FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD 279
           ML+G D ++  D+ ++VT+    F     QR PR RY  VH+ NN    W IYA+  S +
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSN 258

Query: 280 SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTD-CIRSEGDLSSLKLKAGLMAEAGEH 338
             I S+ N + A  +    +       +   A  +   RS  D            +  E 
Sbjct: 259 PTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEET 318

Query: 339 NMFHPSEHY 347
           N+++ +E +
Sbjct: 319 NIYNSNEAF 327

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

 Score =  197 bits (502), Expect = 1e-60
 Identities = 53/292 (18%), Positives = 93/292 (31%), Gaps = 63/292 (21%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFE---------- 115
            + G AEGF     GG      + TT  +     L       EP  I+ +          
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIILDQTFDFTGTEG 56

Query: 116 -------------------------------------VSGTIHLRSHLSVSSYKTIDGRG 138
                                                V+        ++V+S K+I G+G
Sbjct: 57  TETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQG 116

Query: 139 QRVKLTGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDY 193
            +  + GKGLR+    ++VII N+         V   DAI +   S  +WID  +  R  
Sbjct: 117 TKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD-SDLVWIDHVTTARIG 175

Query: 194 DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQ 249
              ++  T     +T+S                  +    +      VT+   +F     
Sbjct: 176 RQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSG 235

Query: 250 RHPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           R P+V+    +H  NN   N+  +A        + ++ N+++     +    
Sbjct: 236 RMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPI 287

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

 Score =  188 bits (477), Expect = 5e-57
 Identities = 46/281 (16%), Positives = 86/281 (30%), Gaps = 63/281 (22%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFE----------- 115
           ++G AEGF +   GG      +  T+ +     L       E   IV             
Sbjct: 3   VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVLTKTFDFTDSEGT 57

Query: 116 ------------------------------------VSGTIHLRSHLSVSSYKTIDGRGQ 139
                                               V         ++V+S K++ G G 
Sbjct: 58  TTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGS 117

Query: 140 RVKLTGKGLRL-KECEHVIICNLEFEGGK---GPDVDAIQIKPKSKHIWIDRCSLRD-YD 194
              + GKGLR+    E++II N+             DAI +      +WID  +      
Sbjct: 118 SGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGR 176

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQR 250
              +  T     ++++  +               +    +      VT+   +   T  R
Sbjct: 177 QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGR 236

Query: 251 HPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
            P+V+    +H  NNY  +   +A        + ++ N+++
Sbjct: 237 SPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQ 277

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

 Score =  185 bits (471), Expect = 4e-56
 Identities = 73/363 (20%), Positives = 123/363 (33%), Gaps = 76/363 (20%)

Query: 67  LAGQAEGFGRLAIG------GLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
            +    G+                 +Y VT +++                 I+  + GTI
Sbjct: 10  ESAPTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKIIQ-IKGTI 63

Query: 121 HL--------------RSHLSVSSYKTIDGRGQRVKLTGKGLRL---KECEHVIICNLEF 163
            +              RS +++ +  T+ G G   K     L +       +VII N+  
Sbjct: 64  DISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYI 123

Query: 164 EG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD----------------- 194
           +             G   + DA+ I   + H+WID  ++ D +                 
Sbjct: 124 QTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQH 183

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA--DRCIRVTIHHCFFDGTRQRHP 252
           DG +DI R S  +T+S      HDKTMLIG   S+ +     + VT+ +  F+   +R P
Sbjct: 184 DGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAP 243

Query: 253 RVRYAKVHLYNNYTRNWG-------IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKA 305
           RVRY  +H +NN  +           Y+        + S+ N +              KA
Sbjct: 244 RVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA------NLSASKA 297

Query: 306 SDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQR 365
               +     I S+       L    +  +G     + S+  Y + V   T  L Q +  
Sbjct: 298 CKVVKKFNGSIFSDNGSV---LNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITD 354

Query: 366 CTG 368
             G
Sbjct: 355 NAG 357

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

 Score =  166 bits (422), Expect = 1e-48
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 43/211 (20%)

Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK--------------- 167
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                  
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178

Query: 168 -GPDVDAIQIKPKSKHIWIDRCSLR-----------------DYDDGLIDITRESTDITV 209
                D I I     HIWID C+                    + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITING-GTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237

Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297

Query: 269 WG-------IYAVCASVDSQIYSQCNIYEAG 292
                     YA      S+IY+Q N+ +  
Sbjct: 298 STSSSSYPFSYAWGIGKSSKIYAQNNVIDVP 328

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

 Score =  157 bits (398), Expect = 2e-45
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 29/248 (11%)

Query: 68  AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLS 127
           A + +  G+   GG +  +   T   D    +       +               R    
Sbjct: 35  AARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDP----------RGVEI 84

Query: 128 VSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWI 185
               K I   G        G+ +K+   V++ N+      G   D D I++   S ++W+
Sbjct: 85  KEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDD-SPNVWV 143

Query: 186 DRCSL-------------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232
           D   L                 +  +DI   S  +TVS  +     K  L G   S  +D
Sbjct: 144 DHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDG---SSSSD 200

Query: 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292
               +T HH +++    R P  R   VH YNN   N     +    + Q   + N +E  
Sbjct: 201 TGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKA 260

Query: 293 QKKMAFKY 300
              +  +Y
Sbjct: 261 INPVTSRY 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	100.0
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	100.0
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	100.0
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	100.0
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	100.0
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	98.63
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	98.59
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.31
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.16
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.98
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.97
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.79
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.61
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.61
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.58
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.56
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	97.2
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.17
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.13
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	97.03
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	96.89
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	96.72
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	96.62
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	96.58
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	96.57
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	96.56
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	95.99
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	95.93
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	95.91
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	95.67
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	95.39
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	95.33
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	94.46
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	87.48

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.4e-71  Score=549.78  Aligned_cols=304  Identities=35%  Similarity=0.516  Sum_probs=256.7

Q ss_pred             ccccccccCCcccccCCCCCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceee
Q 017111           61 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDG  136 (377)
Q Consensus        61 d~~~~~~a~~a~Gfg~~ttGG~gG~vv~VT~l~ds----g~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G  136 (377)
                      +.++|+|++||||||++||||+||+||+||||+|+    ||||||+||++++||||||+|+|+|+|+++|.|.|||||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G   94 (346)
T d1pxza_          15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             HHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEc
Confidence            57899999999999999999999999999999998    99999999999999999999999999999999999999999


Q ss_pred             cccceEEeCCc--EEEeeeccEEEeeeEEeCCC-------------------CCCCCceEecCCCceEEEEceeeecCCC
Q 017111          137 RGQRVKLTGKG--LRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDD  195 (377)
Q Consensus       137 ~G~g~~I~G~g--l~i~~a~NVIIRnL~ir~g~-------------------~~~~DaI~i~~~s~nVwIDHcs~s~~~D  195 (377)
                      ||..+.|.+.+  |.+..++|||||||+||.+.                   ..++|+|.|+ ++++||||||+|+|+.|
T Consensus        95 ~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D  173 (346)
T d1pxza_          95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeecccc
Confidence            99888888654  88888999999999999753                   1357999997 79999999999999999


Q ss_pred             CceEeeeCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCC-CCCCCccccCeeEEEcceEEcCcccee
Q 017111          196 GLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT-RQRHPRVRYAKVHLYNNYTRNWGIYAV  274 (377)
Q Consensus       196 glidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~-~~R~Pr~r~G~~hv~NN~~~n~~~~ai  274 (377)
                      |+||+++++++||||||+|++|.|++|+|+++....++.++||||||+|.++ .+|.|+.|+|.+|++||||++|..|++
T Consensus       174 ~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~  253 (346)
T d1pxza_         174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE
Confidence            9999999999999999999999999999998876667778999999999765 556678899999999999999999999


Q ss_pred             eecCCceEEEEceeEecCCccceeeeecc-ccCCcccCCCceEEecCCeeecccccccccccCCcccccCCCCCCccccc
Q 017111          275 CASVDSQIYSQCNIYEAGQKKMAFKYLTE-KASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTVA  353 (377)
Q Consensus       275 ~~~~~a~v~~e~N~F~~g~~~~~~~~~~~-~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~~~~~~~~~~P~~~y~~yt~~  353 (377)
                      ++++++++++|+|||+.++.+........ ..........+++++++|.|+|+++............|.|++   .|+++
T Consensus       254 ~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~~~~~~---~y~~~  330 (346)
T d1pxza_         254 GGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNE---AFKVE  330 (346)
T ss_dssp             EEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTTT---CCCCC
T ss_pred             eccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccccccCcc---ccccC
Confidence            99999999999999999876543211111 111122335568899999999987653222222335566653   36888


Q ss_pred             chHHHHHHHHHhCcCCC
Q 017111          354 ERTDNLKQLLQRCTGWQ  370 (377)
Q Consensus       354 ~As~avk~vv~~~AG~~  370 (377)
                      +|+ +|+.++ ++||+-
T Consensus       331 ~as-~V~~v~-~~AGal  345 (346)
T d1pxza_         331 NGN-AAPQLT-KNAGVV  345 (346)
T ss_dssp             CGG-GHHHHT-TTCSSC
T ss_pred             CHH-HHHhhh-ccCCCC
Confidence            886 788855 689985

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=100.00  E-value=3e-63  Score=491.09  Aligned_cols=291  Identities=24%  Similarity=0.364  Sum_probs=233.6

Q ss_pred             CcccccC----CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--------------ceeEeccC
Q 017111           70 QAEGFGR----LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--------------SHLSVSSY  131 (377)
Q Consensus        70 ~a~Gfg~----~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~--------------~~l~V~sn  131 (377)
                      ++.|||+    .|+||+||+||+||||+|     ||+|+++++|+++||+|+|+|+|.              .+|.|.||
T Consensus         7 a~~G~a~~~g~~t~GG~gg~v~~Vt~l~d-----L~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~~i~v~sn   81 (355)
T d1pcla_           7 ATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSN   81 (355)
T ss_pred             CCCceeccCCCCCcCCCCceEEEeCCHHH-----HHHHHhCcCCceEEEEECeEEEcCCccceeccccccccceEecCCC
Confidence            5677876    488999999999999999     999999999999999999999874              35788999


Q ss_pred             cceeecccceEEeCCcEEEeeeccEEEeeeEEeCCC------------CCCCCceEecCCCceEEEEceeeecCC-----
Q 017111          132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK------------GPDVDAIQIKPKSKHIWIDRCSLRDYD-----  194 (377)
Q Consensus       132 ~TI~G~G~g~~I~G~gl~i~~a~NVIIRnL~ir~g~------------~~~~DaI~i~~~s~nVwIDHcs~s~~~-----  194 (377)
                      |||+|+|.+++|.|.+|+|++++|||||||+||++.            ..+.|+|.+. +++|||||||+|+|+.     
T Consensus        82 ~TI~G~G~~~~i~g~gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~-~~~~vwIDHcs~s~~~d~~~~  160 (355)
T d1pcla_          82 TTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDK  160 (355)
T ss_pred             CeEEeccCceEEecCEEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEec-CCccEEEECcccccCcccccc
Confidence            999999999999999999999999999999999753            1347999997 8999999999999964     


Q ss_pred             ------------CCceEeeeCCceEEEeCceecCCCceeEecCCCCCC--CCcceeEEEecceecCCCCCCCccccCeeE
Q 017111          195 ------------DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV--ADRCIRVTIHHCFFDGTRQRHPRVRYAKVH  260 (377)
Q Consensus       195 ------------Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~--~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~h  260 (377)
                                  |+++|++..+++||||||+|.+|.|++|+|+++...  .+...+||||||||+++.+|+||+|+|++|
T Consensus       161 ~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~G~~h  240 (355)
T d1pcla_         161 YTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIH  240 (355)
T ss_pred             cccccccccccccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCcccccEEE
Confidence                        888999999999999999999999999999887543  234579999999999999999999999999


Q ss_pred             EEcceEEcCcc-------ceeeecCCceEEEEceeEecCCccceeeeeccccCCcccC-CCceEEecCCeeecccccccc
Q 017111          261 LYNNYTRNWGI-------YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEA-RTDCIRSEGDLSSLKLKAGLM  332 (377)
Q Consensus       261 v~NN~~~n~~~-------~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~-~~G~~~~~gn~~~ng~~~~~~  332 (377)
                      ++||||++|..       |+++.+.++++++|+|||++++.+.....  ......... ...++.. .+.++++......
T Consensus       241 v~NN~~~n~~~~~~~~~~y~~~~~~~~~v~~e~NyF~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~  317 (355)
T d1pcla_         241 AYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGK--NPECSIVKQFNSKVFSD-KGSLVNGSTTTKL  317 (355)
T ss_pred             EECcEEECCCCcccccceeeeccCcCceEEEeCCEEECCCCcccccc--CCCccceeccCCcEEec-CcccccCcccccc
Confidence            99999998754       68899999999999999999876533211  000000111 1223333 3334555543332


Q ss_pred             cccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          333 AEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       333 ~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      + ......|.|...| .|+++.++++|++.|.++||++-
T Consensus       318 ~-~~~~~~~~~~~p~-~~~~~~~a~~v~~~V~~~AGAGk  354 (355)
T d1pcla_         318 D-TCGLTAYKPTLPY-KYSAQTMTSSLATSINNNAGYGK  354 (355)
T ss_pred             C-CccccccccCCCc-cceecChHHHHHHHHhhcCCCCc
Confidence            2 2334556676655 47886554689999999999874

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=100.00  E-value=1e-62  Score=488.70  Aligned_cols=288  Identities=24%  Similarity=0.380  Sum_probs=225.8

Q ss_pred             CCcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--------------ceeEe
Q 017111           69 GQAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--------------SHLSV  128 (377)
Q Consensus        69 ~~a~Gfg~---~ttGG~gG---~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~--------------~~l~V  128 (377)
                      .+++||++   +||||+||   +||+||||+|     ||+||+++.+++|| .|+|+|++.              .+|.|
T Consensus        12 ~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~d-----L~~al~~~~~p~iI-~v~G~I~~~~~~~~~~~~~~~~~~~i~v   85 (361)
T d1pe9a_          12 APTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKII-QIKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CCSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEE-EECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             cCCcceeecCCCCCcCCCCcCCEEEEeCCHHH-----HHHHHhCCCCeEEE-EEeeEEECCCCccccccccccccceEEe
Confidence            45688886   68877776   6999999999     99999875444443 499999985              46889


Q ss_pred             ccCcceeecccceEEeCCcEEEe---eeccEEEeeeEEeCCCC------------CCCCceEecCCCceEEEEceeeecC
Q 017111          129 SSYKTIDGRGQRVKLTGKGLRLK---ECEHVIICNLEFEGGKG------------PDVDAIQIKPKSKHIWIDRCSLRDY  193 (377)
Q Consensus       129 ~sn~TI~G~G~g~~I~G~gl~i~---~a~NVIIRnL~ir~g~~------------~~~DaI~i~~~s~nVwIDHcs~s~~  193 (377)
                      .|||||+|+|.+++|.+.+|.|.   +++||||||||||.+..            .+.|+|+|..+++|||||||+|+|+
T Consensus        86 ~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~  165 (361)
T d1pe9a_          86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDG  165 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECT
T ss_pred             CCCcEEEEecCCeEEeeeeEEEeeccccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccC
Confidence            99999999999999999999995   58899999999997531            3579999975689999999999996


Q ss_pred             C-----------------CCceEeeeCCceEEEeCceecCCCceeEecCCCCCC--CCcceeEEEecceecCCCCCCCcc
Q 017111          194 D-----------------DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV--ADRCIRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       194 ~-----------------Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~--~d~~~~VT~hhNlf~~~~~R~Pr~  254 (377)
                      .                 ||++|++.++++||||||+|.+|.|++|+|++++..  .+..++||||||||+++.+|+||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~  245 (361)
T d1pe9a_         166 NFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRV  245 (361)
T ss_dssp             TSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEE
T ss_pred             CccccccccccCcceeeeeeeEEeecCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCe
Confidence            4                 899999999999999999999999999999987542  234579999999999999999999


Q ss_pred             ccCeeEEEcceEEcCcc-------ceeeecCCceEEEEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeeccc
Q 017111          255 RYAKVHLYNNYTRNWGI-------YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKL  327 (377)
Q Consensus       255 r~G~~hv~NN~~~n~~~-------~ai~~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~  327 (377)
                      |+|++|+|||||++|..       |+++++.++++++|+|||+.++.+....      ........|.+....+.+++|.
T Consensus       246 r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~g~  319 (361)
T d1pe9a_         246 RYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKA------CKVVKKFNGSIFSDNGSVLNGS  319 (361)
T ss_dssp             SSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGG------GGGEEESSCCEEEEESCEETTE
T ss_pred             eCceEEEECceeecCcCccccccceeeecCCCCEEEEEceEEECCCCCcccc------cceeecCCCCEEecCCeeecCc
Confidence            99999999999999754       7999999999999999999876542210      0001122333333444556665


Q ss_pred             ccccccccCCcccccCCCCCCcccccchHHHHHHHHHhCcCCCc
Q 017111          328 KAGLMAEAGEHNMFHPSEHYYTWTVAERTDNLKQLLQRCTGWQD  371 (377)
Q Consensus       328 ~~~~~~~~~~~~~~~P~~~y~~yt~~~As~avk~vv~~~AG~~~  371 (377)
                      ......  .....+.++..| .|+++++++++++.|.++||++-
T Consensus       320 ~~~~~~--~~~~~~~~~~py-~y~~~~~a~~v~~~V~~~AGaGk  360 (361)
T d1pe9a_         320 AVDLSG--CGFSAYTSKIPY-IYDVQPMTTELAQSITDNAGSGK  360 (361)
T ss_dssp             ECCCTT--SSCBCCCSCCCS-CCCCCCCCHHHHHHHHHHCSTTC
T ss_pred             cccccC--CcccccccCCCc-ccccccchHHHHHHHHhcCCCCC
Confidence            432211  112333344435 47888855689999999999863

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=100.00  E-value=3.4e-62  Score=484.57  Aligned_cols=221  Identities=23%  Similarity=0.286  Sum_probs=198.3

Q ss_pred             ccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec-----------------------
Q 017111           67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR-----------------------  123 (377)
Q Consensus        67 ~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~-----------------------  123 (377)
                      +.+.|||||+.||||++|++|+|||++|     ||+||++++||||+|  +|+|++.                       
T Consensus         3 v~g~a~Gfa~~ttGG~~g~v~~Vtt~~e-----L~~al~~~~PriI~~--~gtid~~~~~~~~~~~~~~~~~~~~~~~~~   75 (359)
T d1qcxa_           3 VVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQVA   75 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEE
T ss_pred             CCccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEE--CceEcccccccccccccccccccccccccc
Confidence            5688999999999999999999999999     999999999999996  5888764                       


Q ss_pred             --------------------------ceeEeccCcceeecccceEEeCCcEEE-eeeccEEEeeeEEeCCCC---CCCCc
Q 017111          124 --------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKG---PDVDA  173 (377)
Q Consensus       124 --------------------------~~l~V~sn~TI~G~G~g~~I~G~gl~i-~~a~NVIIRnL~ir~g~~---~~~Da  173 (377)
                                                .+|.|.|||||+|+|.+++|.|.+|++ ++++|||||||+||++..   .+.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Da  155 (359)
T d1qcxa_          76 INLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA  155 (359)
T ss_dssp             ECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCS
T ss_pred             cccccccccccccCcceeeeeeccCcceEEeCCCCeEEeccCCeEEEccceEEEeCCccEEEeCeEEecCCCCCCCCCCe
Confidence                                      258899999999999999999999977 579999999999997643   45799


Q ss_pred             eEecCCCceEEEEceeeecCCCC-ceEeeeCCceEEEeCceecCCCceeEecCCCCC----CCCcceeEEEecceecCCC
Q 017111          174 IQIKPKSKHIWIDRCSLRDYDDG-LIDITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       174 I~i~~~s~nVwIDHcs~s~~~Dg-lidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~----~~d~~~~VT~hhNlf~~~~  248 (377)
                      |+|. +++|||||||+|+|..|+ ++++++.+++||||||+|.+|.|.++++..+..    ..++.++||||||||+++.
T Consensus       156 i~i~-~s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~  234 (359)
T d1qcxa_         156 ITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLS  234 (359)
T ss_dssp             EEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBC
T ss_pred             EEee-CCCCEEEEeeeccccCCCceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccCCC
Confidence            9997 899999999999999886 558888889999999999999999999866432    2345689999999999999


Q ss_pred             CCCCccccCe-eEEEcceEEcCccceeeecCCceEEEEceeEecCCcc
Q 017111          249 QRHPRVRYAK-VHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKK  295 (377)
Q Consensus       249 ~R~Pr~r~G~-~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~  295 (377)
                      +|+||+|+|. +|++||||+||..|++++++++++++|+|||++++.+
T Consensus       235 ~R~P~~r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~  282 (359)
T d1qcxa_         235 GRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVV  282 (359)
T ss_dssp             SCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEE
T ss_pred             CCCccccCCceEEEEeeEEeCcCCEEEecCCceEEEEEeeEEECCCCc
Confidence            9999999996 9999999999999999999999999999999987654

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.3e-61  Score=481.38  Aligned_cols=290  Identities=28%  Similarity=0.437  Sum_probs=230.9

Q ss_pred             ccccccccCCcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhhh---cCCCeEEEEEeceEEEecc-------
Q 017111           61 DCSLRALAGQAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGCR---MKEPLWIVFEVSGTIHLRS-------  124 (377)
Q Consensus        61 d~~~~~~a~~a~Gfg~---~ttGG~gG---~vv~VT~l~dsg~GSLr~Ai~---~~~Pr~IVf~vsG~I~l~~-------  124 (377)
                      |-.++.|+ .++|||+   +||||.++   .||+|+|++|     |++||.   .++||+|+  ++|+|+...       
T Consensus         2 ~~~~~~~~-~~~G~As~~~gttGG~~a~~~~v~~v~t~~e-----l~~~l~~~~~~~P~vI~--~~gti~~~~~~~~~~~   73 (399)
T d1bn8a_           2 DLGHQTLG-SNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPL   73 (399)
T ss_dssp             CGGGCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBC
T ss_pred             cchhhccc-CCCceeecCCCcCCCCCCCCCceEecCCHHH-----HHHHHhhccCCCceEEE--EccEEecccccccccc
Confidence            44455555 7999985   79999766   4899999999     999994   57899887  789997631       


Q ss_pred             ------------------------------------------------eeEeccCcceeecccceEEeCCcEEEeeeccE
Q 017111          125 ------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLKECEHV  156 (377)
Q Consensus       125 ------------------------------------------------~l~V~sn~TI~G~G~g~~I~G~gl~i~~a~NV  156 (377)
                                                                      +|+|.|||||+|+|.+++|.|.+|+|+ ++||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~-a~NV  152 (399)
T d1bn8a_          74 GLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNV  152 (399)
T ss_dssp             CHHHHCCTTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEEC-SEEE
T ss_pred             cccccccccccccccccccChhhhccccccccccccccccccccccceEEecCCCceEEecCCCcEEeccEEEEe-CceE
Confidence                                                            588999999999999999999999995 9999


Q ss_pred             EEeeeEEeCCCC----------------CCCCceEecCCCceEEEEceeeecCC-----------------CCceEeeeC
Q 017111          157 IICNLEFEGGKG----------------PDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRE  203 (377)
Q Consensus       157 IIRnL~ir~g~~----------------~~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dglidi~~~  203 (377)
                      |||||+||....                .+.|+|+|. +++|||||||+|+|+.                 |++||++++
T Consensus       153 Iirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~g  231 (399)
T d1bn8a_         153 IIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNG  231 (399)
T ss_dssp             EEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETT
T ss_pred             EEeCeEEEcCcccccccccccccccCcCCCCceEEEe-cCccEEEECceeccCCcccccccccccccccccccceeeccc
Confidence            999999996531                347999997 7999999999999974                 999999999


Q ss_pred             CceEEEeCceecCCCceeEecCCCCCCCC-cceeEEEecceecCCCCCCCccccCeeEEEcceEEcCcc-------ceee
Q 017111          204 STDITVSRCHFSSHDKTMLIGADPSHVAD-RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI-------YAVC  275 (377)
Q Consensus       204 s~~vTIS~n~f~~h~k~~LiG~~d~~~~d-~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~-------~ai~  275 (377)
                      +++||||||+|.+|+|++|+|++|+...| +.++||||||||+++.+|+||+|+|++|+|||||++|..       |+++
T Consensus       232 s~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~  311 (399)
T d1bn8a_         232 ANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWG  311 (399)
T ss_dssp             CEEEEEESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEE
T ss_pred             ceeEEeECccccCCcceeEecCCCCcccccCCceEEEEeeEecCccccCccccccEEEEEccEeECCCcccccccceeec
Confidence            99999999999999999999998876543 468999999999999999999999999999999999875       8999


Q ss_pred             ecCCceEEEEceeEecCCccceeeeeccccCCcccCCCceEEecCCeeeccccccccc--ccCCcccccCCCCCCccccc
Q 017111          276 ASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMA--EAGEHNMFHPSEHYYTWTVA  353 (377)
Q Consensus       276 ~~~~a~v~~e~N~F~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~~~~--~~~~~~~~~P~~~y~~yt~~  353 (377)
                      +++++++++|+|||+.+..+.......       ......+...++++ ++.......  .......|.|++   .|+++
T Consensus       312 ~~~~a~il~EgN~F~~~~~~~~~~~~~-------~~~g~~~~~~gn~~-~g~~~~~~~~~~~~~~~~~~p~y---~y~~~  380 (399)
T d1bn8a_         312 IGKSSKIYAQNNVIDVPGLSAAKTISV-------FSGGTALYDSGTLL-NGTQINASAANGLSSSVGWTPSL---HGSID  380 (399)
T ss_dssp             ECTTCEEEEESCEEECTTCCSGGGEEE-------CTTCCBCEEESCEE-TTEECCHHHHTTCBSCCSCCCCS---CCCCC
T ss_pred             cccCceEEEEeeEEECCCCcccceecc-------ccCCceEecCCcEe-cCccccCccCcCccccccccccc---ccccC
Confidence            999999999999999887543211110       01111233444443 332221111  112334566653   47899


Q ss_pred             chHHHHHHHHHhCcCCCcc
Q 017111          354 ERTDNLKQLLQRCTGWQDV  372 (377)
Q Consensus       354 ~As~avk~vv~~~AG~~~~  372 (377)
                      +|+ +|++.|.+.||++-.
T Consensus       381 ~A~-~v~~~V~a~AGAGkl  398 (399)
T d1bn8a_         381 ASA-NVKSNVINQAGAGKL  398 (399)
T ss_dssp             CHH-HHHHHHHHHCSTTSC
T ss_pred             CHH-HHHHHhhccCCCccc
Confidence            985 899999999999753

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=100.00  E-value=1.2e-58  Score=458.82  Aligned_cols=220  Identities=21%  Similarity=0.250  Sum_probs=191.9

Q ss_pred             ccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEe------------------------
Q 017111           67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL------------------------  122 (377)
Q Consensus        67 ~a~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l------------------------  122 (377)
                      +.+.|||||+.||||++|++|+|||++|     ||+||++++||||||  +|+|++                        
T Consensus         3 v~~~a~Gfa~~ttGG~~g~~~~Vtt~~e-----L~~al~~~~PriI~~--~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~   75 (359)
T d1idka_           3 VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTASACQVA   75 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEE
T ss_pred             ccccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEE--cceEeccccccccccccccccccccccccc
Confidence            5688999999999999999999999999     999999999999997  355542                        


Q ss_pred             -------------------------cceeEeccCcceeecccceEEeCCcEEE-eeeccEEEeeeEEeCCCC---CCCCc
Q 017111          123 -------------------------RSHLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKG---PDVDA  173 (377)
Q Consensus       123 -------------------------~~~l~V~sn~TI~G~G~g~~I~G~gl~i-~~a~NVIIRnL~ir~g~~---~~~Da  173 (377)
                                               +.+|+|.|||||+|+|.+++|.|.||.| ++++|||||||+||++..   ++.||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da  155 (359)
T d1idka_          76 IDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA  155 (359)
T ss_dssp             ECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCS
T ss_pred             cccccccccccccCccceeeeeccCCCceEeCCCceEEeccCCeEEecCceEEEecCceEEEECcEEecCCCCCCCCCCe
Confidence                                     3468999999999999999999999988 579999999999998653   45799


Q ss_pred             eEecCCCceEEEEceeeecCCCCce-EeeeCCceEEEeCceecCCCceeEecCCCCC----CCCcceeEEEecceecCCC
Q 017111          174 IQIKPKSKHIWIDRCSLRDYDDGLI-DITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       174 I~i~~~s~nVwIDHcs~s~~~Dgli-di~~~s~~vTIS~n~f~~h~k~~LiG~~d~~----~~d~~~~VT~hhNlf~~~~  248 (377)
                      |+|. +++|||||||+|+|..|+++ +.++.+++||||||+|.+|.+.++++.+..+    ..+...+||||||||+++.
T Consensus       156 I~i~-~s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~  234 (359)
T d1idka_         156 ITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTS  234 (359)
T ss_dssp             EEEC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBC
T ss_pred             EEee-CCccEEEEeeeeccCCCCceeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccCC
Confidence            9997 89999999999999999987 5567899999999999988776655433211    1223469999999999999


Q ss_pred             CCCCccccC-eeEEEcceEEcCccceeeecCCceEEEEceeEecCCc
Q 017111          249 QRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK  294 (377)
Q Consensus       249 ~R~Pr~r~G-~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~  294 (377)
                      +|+||+|+| .+|++||||++|..|++.+++++++++|+|||+....
T Consensus       235 ~R~P~~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~  281 (359)
T d1idka_         235 GRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDT  281 (359)
T ss_dssp             SCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEE
T ss_pred             CCCceecccceEEEECcEEECccceEEecCCceeEEEeceEEeCCcC
Confidence            999999998 6999999999999999999999999999999987543

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=100.00  E-value=1.7e-47  Score=377.59  Aligned_cols=279  Identities=19%  Similarity=0.206  Sum_probs=209.9

Q ss_pred             CCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeecccceEEeCCcE
Q 017111           69 GQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGL  148 (377)
Q Consensus        69 ~~a~Gfg~~ttGG~gG~vv~VT~l~dsg~GSLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V~sn~TI~G~G~g~~I~G~gl  148 (377)
                      ...++.|+.+.||+.+.+++|+.+.|...+.+..-+...--..    ..+.+    .+.+.+++||+|+  .+.+.+.+|
T Consensus        36 ~~~~~~g~~~~gg~~~~vi~~~G~~d~~~~~~~~~~~~~~~~~----~~~~~----i~~~~~~i~i~G~--~~~~~~~gl  105 (353)
T d1o88a_          36 ARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKD----PRGVE----IKEFTKGITIIGA--NGSSANFGI  105 (353)
T ss_dssp             TTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTTGGGSTTSC----CCEEE----EESBCSCEEEEEC--TTCCBSSEE
T ss_pred             cccccccceecCCCeEEEEEEeeeeecccCccccccccccccc----ccCcE----EEecCCCEEEEcC--CCccccceE
Confidence            3466777888888888888888887743222222111110000    01111    1223566777765  556789999


Q ss_pred             EEeeeccEEEeeeEEeCCCC--CCCCceEecCCCceEEEEceeeecCCC-------------CceEeeeCCceEEEeCce
Q 017111          149 RLKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRDYDD-------------GLIDITRESTDITVSRCH  213 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~--~~~DaI~i~~~s~nVwIDHcs~s~~~D-------------glidi~~~s~~vTIS~n~  213 (377)
                      .|.+++|||||||+||.+..  .+.|+|.++ +++|||||||+|+|+.|             +++|+++.+++||||||+
T Consensus       106 ~i~~~~nViirnl~i~~~~~~~~~~D~i~~~-~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~  184 (353)
T d1o88a_         106 WIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNY  184 (353)
T ss_dssp             EEESCCSEEEESCEEECCSCGGGTCCSEEEE-SCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCE
T ss_pred             EEeccceEEEeCcEEecCCCCCCCCcEEEEe-cccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcc
Confidence            99999999999999997643  467999997 89999999999999754             678999999999999999


Q ss_pred             ecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEEcCccceeeecCCceEEEEceeEecCC
Q 017111          214 FSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       214 f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~  293 (377)
                      |.+|.|++|+|+++...   ..+||||||||+++.+|+||+|+|.+|+|||||++|..|+++.++++++++|+|||++++
T Consensus       185 ~~~~~k~~l~g~~~~~~---~~~vT~hhN~~~~~~~R~P~~~~g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~  261 (353)
T d1o88a_         185 IHGVKKVGLDGSSSSDT---GRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAI  261 (353)
T ss_dssp             EEEEEECCEESSSSSCC---CCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEE
T ss_pred             cccccccceeCCccCcC---CceEEEEeeEEcCCccCCcceecceEEEEEEEEecccceEEecCCCceEEEEeeEEeccc
Confidence            99999999999876532   348999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccceeeeeccccCCcccCCCceEEecCCeeecccccc------------cc-cccCCcccccCCCCCCcccccchHHHHH
Q 017111          294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAG------------LM-AEAGEHNMFHPSEHYYTWTVAERTDNLK  360 (377)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~~~------------~~-~~~~~~~~~~P~~~y~~yt~~~As~avk  360 (377)
                      .+....+        +....|++...+|.+..+....            .. ........+.|+..| .|++++|+ +|+
T Consensus       262 ~p~~~~~--------~~~~~g~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~t~~~A~-~v~  331 (353)
T d1o88a_         262 NPVTSRY--------DGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAY-NYSPVSAQ-CVK  331 (353)
T ss_dssp             SSEEECS--------SSSSCCEEEEESCSCCSTTHHHHTTEECCCCSSCCEECTTCCCCSCCCCCCS-CCCCCCHH-HHH
T ss_pred             CCccccc--------cCCcceeEEECCCeeecccccccccccccccccccccCCcccccccccCCCc-ccccCCHH-HHH
Confidence            6644221        2345678888888877543210            00 001112344566556 58999996 799


Q ss_pred             HHHHhCcCCCc
Q 017111          361 QLLQRCTGWQD  371 (377)
Q Consensus       361 ~vv~~~AG~~~  371 (377)
                      ++|.++||++-
T Consensus       332 ~~V~~~AGaGk  342 (353)
T d1o88a_         332 DKLPGYAGVGK  342 (353)
T ss_dssp             HHGGGTSSSSS
T ss_pred             HHHHhcCCCCC
Confidence            99999999874

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=98.63  E-value=2.3e-07  Score=89.96  Aligned_cols=93  Identities=19%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             EEEeeeccEEEeeeEEeCCCC------------------------CCCCceEecCCCceEEEEceeeecCCCCceEeeeC
Q 017111          148 LRLKECEHVIICNLEFEGGKG------------------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE  203 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~------------------------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~  203 (377)
                      |.+.+++||.|++|+|+....                        ...|||.+. .++||||+.|.|... |..|.++..
T Consensus       154 i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~-~s~nv~I~n~~i~~g-DD~i~~ks~  231 (376)
T d1bhea_         154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATG-DDNVAIKAY  231 (376)
T ss_dssp             EEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECS-SCSEEEEEC
T ss_pred             EEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeecc-ccceEEEEeceeecC-CCceeeecc
Confidence            666677888888888775421                        124677765 667777777776443 333666543


Q ss_pred             -----CceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCC
Q 017111          204 -----STDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       204 -----s~~vTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                           +.+|+|.+|.|.. ..++.+|+...    ...+|+|++|.|.++
T Consensus       232 ~~~~~~~ni~i~n~~~~~-~~g~~iGs~~~----~v~nv~i~n~~~~~~  275 (376)
T d1bhea_         232 KGRAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGT  275 (376)
T ss_dssp             TTSCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESC
T ss_pred             cCCCCcceEEEEeeEEec-CCCceeccccC----CEEEEEEEeeeEcCC
Confidence                 3467777777754 33566665321    123577777766654

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=98.59  E-value=6.1e-07  Score=87.95  Aligned_cols=192  Identities=18%  Similarity=0.230  Sum_probs=111.6

Q ss_pred             hHHHhhhcCCCeEEEEEeceEEEecceeEe------ccCcceeecc-cceEEeCC-cEEEeeeccEEEeeeEEeCCCC--
Q 017111           99 SLREGCRMKEPLWIVFEVSGTIHLRSHLSV------SSYKTIDGRG-QRVKLTGK-GLRLKECEHVIICNLEFEGGKG--  168 (377)
Q Consensus        99 SLr~Ai~~~~Pr~IVf~vsG~I~l~~~l~V------~sn~TI~G~G-~g~~I~G~-gl~i~~a~NVIIRnL~ir~g~~--  168 (377)
                      +|++||+...|.-.|+--.|+.+- ..|.+      .+.+||.+.+ ..+.|.|. .|+|. +++|+|++|+|+++..  
T Consensus         8 tiq~Ai~~a~pGDtI~l~~GtY~~-~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~-g~~v~i~Gl~~~~~~~~~   85 (481)
T d1ofla_           8 TLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLILEGIWFKDGNRAI   85 (481)
T ss_dssp             HHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEEEESCEEEEECCCG
T ss_pred             HHHHHHHhCCCCCEEEECCCEEEc-CEEEeccCcccCCCEEEEeCCCCceEEcCCCeEEEE-eCCEEEeCeEEECCCCcc
Confidence            599999987776666657888752 23333      3568999985 45677775 47775 7899999999997532  


Q ss_pred             ----CCCCceEecCCCceEEEEceeeecCCCCc---eEee-----eCCceEEEeCceecCC-CceeEec--CCCCCCC--
Q 017111          169 ----PDVDAIQIKPKSKHIWIDRCSLRDYDDGL---IDIT-----RESTDITVSRCHFSSH-DKTMLIG--ADPSHVA--  231 (377)
Q Consensus       169 ----~~~DaI~i~~~s~nVwIDHcs~s~~~Dgl---idi~-----~~s~~vTIS~n~f~~h-~k~~LiG--~~d~~~~--  231 (377)
                          ....++... .+.++.|.+|.+.......   .+..     ....+.+|++|.|... ..+..+.  .......  
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~~~~~  164 (481)
T d1ofla_          86 QAWKSHGPGLVAI-YGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDG  164 (481)
T ss_dssp             GGCCTTSCCSEEE-CSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCC
T ss_pred             ceeeccCCceEEe-EeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEecCCCCccEEEecCCCceeecC
Confidence                123333332 4678889999887643321   1111     1246789999998752 2222221  1111110  


Q ss_pred             ---CcceeEEEecceecCCCCCCCccc---c-------CeeEEEcceEEcCc-cceeeecCCceEEEEceeEecCC
Q 017111          232 ---DRCIRVTIHHCFFDGTRQRHPRVR---Y-------AKVHLYNNYTRNWG-IYAVCASVDSQIYSQCNIYEAGQ  293 (377)
Q Consensus       232 ---d~~~~VT~hhNlf~~~~~R~Pr~r---~-------G~~hv~NN~~~n~~-~~ai~~~~~a~v~~e~N~F~~g~  293 (377)
                         .......+++|+|.++..+.+...   .       ....+.||++++.. ...+.........+++|+|....
T Consensus       165 ~~~~~~~~~~I~~n~~~~~~~~gn~~~~i~~G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~~~  240 (481)
T d1ofla_         165 SVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ  240 (481)
T ss_dssp             SCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBTCEEESCEEESCS
T ss_pred             cccccccccEEEeeEecCccccCCceeEEEeeeEeeccCCEEEEeeeEEccCCceEEEEecCCCcEEeeeEEecCc
Confidence               111245677888776555544321   1       24567788776543 23333333344456777776544

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.31  E-value=7.5e-06  Score=78.04  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             CCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC-CCcee-EecCCCCCCCCcceeEEEecceecCC
Q 017111          170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTM-LIGADPSHVADRCIRVTIHHCFFDGT  247 (377)
Q Consensus       170 ~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~-h~k~~-LiG~~d~~~~d~~~~VT~hhNlf~~~  247 (377)
                      ..|||.+. ++++|+|++|.|.-..|. |.++ ...+|+|++|.+.. |.-.+ -+|...   ...-.+|++.++.|.++
T Consensus       151 NtDGidi~-~s~nV~I~n~~i~tgDDc-Iaik-s~~ni~i~n~~c~~~hG~sigslG~~~---~~~v~nV~v~n~~i~~t  224 (335)
T d1czfa_         151 NTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVN-SGENIWFTGGTCIGGHGLSIGSVGDRS---NNVVKNVTIEHSTVSNS  224 (335)
T ss_dssp             SCCSEEEC-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSCCEEEEEECSSS---CCEEEEEEEEEEEEEEE
T ss_pred             CCCceEec-CCCeEEEEeeEEecCCce-EEec-CceEEEEEEEEEECCCCccccccCCCC---cCCEeEEEEEeeEEECC
Confidence            46999996 889999999999866555 8886 45799999998864 32221 234321   12235899999888764

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.16  E-value=1.2e-05  Score=76.73  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             eeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC-CCcee-Ee
Q 017111          151 KECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTM-LI  223 (377)
Q Consensus       151 ~~a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~-h~k~~-Li  223 (377)
                      ..++||.|+||+|+...     ....|||.+. .+++|+|++|.|....| .|.++ ...+|+|++|.+.. |...+ -+
T Consensus       133 ~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDD-cIaik-s~~ni~i~n~~c~~ghG~sigsl  209 (339)
T d1ia5a_         133 AGSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDD-CVAVN-SGENIYFSGGYCSGGHGLSIGSV  209 (339)
T ss_dssp             ESCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSC-SEEES-SEEEEEEESCEEESSSCEEEEEE
T ss_pred             ecccEEEEEEEEEecccCCccCCCCCCccccC-CCCeEEEeeeEEEcCCC-eEEec-CccEEEEEEeEEeccccceeccc
Confidence            34555556666655321     2346999996 78999999999987555 58886 46799999999874 33222 23


Q ss_pred             cCCCCCCCCcceeEEEecceecCCCCCCCcc
Q 017111          224 GADPSHVADRCIRVTIHHCFFDGTRQRHPRV  254 (377)
Q Consensus       224 G~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~  254 (377)
                      |+..   ...-.+|+|.++.|.+.. +.-|+
T Consensus       210 G~~~---~~~v~nV~v~n~~~~~t~-~GirI  236 (339)
T d1ia5a_         210 GGRS---DNTVKNVTFVDSTIINSD-NGVRI  236 (339)
T ss_dssp             CSSS---CCEEEEEEEEEEEEESCS-EEEEE
T ss_pred             ccCc---cccEEEEEEECCcccCCc-ceeEE
Confidence            5321   122247888888887653 33344

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.98  E-value=0.00011  Score=70.11  Aligned_cols=100  Identities=19%  Similarity=0.302  Sum_probs=64.4

Q ss_pred             EEeeeccEEEeeeEEeCCC-------------CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          149 RLKECEHVIICNLEFEGGK-------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~-------------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      .+.+++||.|+||+|+...             ....|||.+. ++++|+|++|.|....|. |.++ ...+|+|++|.|.
T Consensus       131 ~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~-~s~nv~I~n~~i~~gDD~-iaik-~~~ni~i~n~~~~  207 (349)
T d1hg8a_         131 DITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVT-SGTNIVVSNMYCS  207 (349)
T ss_dssp             EEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEES-SEEEEEEEEEEEE
T ss_pred             EEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeC-CCCeEEEEeeeecCCCCc-eEec-cccceEEEEEEEe
Confidence            3445667777777775421             1246999996 789999999999876664 8885 4678999999987


Q ss_pred             C-CCcee-EecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017111          216 S-HDKTM-LIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR  255 (377)
Q Consensus       216 ~-h~k~~-LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r  255 (377)
                      . |...+ -+|+..   ...-.+|+|-++.+.+.. |..|++
T Consensus       208 ~ghg~sigs~G~~~---~~~v~nV~v~n~~~~~~~-~g~rIK  245 (349)
T d1hg8a_         208 GGHGLSIGSVGGKS---DNVVDGVQFLSSQVVNSQ-NGCRIK  245 (349)
T ss_dssp             SSCCEEEEEESSSS---CCEEEEEEEEEEEEEEEE-EEEEEE
T ss_pred             CCcccccccCCCcc---cccEEEEEEEcceecCCc-ceEEEE
Confidence            4 44332 245321   111247888888776532 345553

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.97  E-value=4.8e-05  Score=74.48  Aligned_cols=96  Identities=13%  Similarity=0.315  Sum_probs=73.3

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCceeEecCC
Q 017111          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (377)
Q Consensus       147 gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~  226 (377)
                      .|.+.+++||.|+||+|+.......|||.|.  ++||||.+|.+.. .|..|.++.++.+|+|+++.+. +..++-||+-
T Consensus       152 ~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~--~snv~I~n~~i~~-gDDcIaiks~s~nI~i~n~~c~-~g~GisiGs~  227 (422)
T d1rmga_         152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW--GSNIWVHDVEVTN-KDECVTVKSPANNILVESIYCN-WSGGCAMGSL  227 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEE--EEEEEEEEEEEES-SSEEEEEEEEEEEEEEEEEEEE-SSSEEEEEEE
T ss_pred             EEEEeccccEEEEeeEEcCCCCCccceEeec--ccEEEEEeeEEEc-CCCccccCCCCccEEEEeeEEc-cccceeEeec
Confidence            4778889999999999998655557999996  4689999999976 4556999999999999998876 3447777753


Q ss_pred             CCCCCCcceeEEEecceecCCC
Q 017111          227 PSHVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       227 d~~~~d~~~~VT~hhNlf~~~~  248 (377)
                      ....  .-.+|++.+++|.+..
T Consensus       228 g~~~--~V~nV~v~n~~~~~s~  247 (422)
T d1rmga_         228 GADT--DVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             CTTE--EEEEEEEEEEEEESSS
T ss_pred             cCCC--CEEEEEEEeEEEeCCC
Confidence            2111  1247889888887653

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.79  E-value=0.00073  Score=65.78  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=74.1

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCceEeeeCCceEEEeCceecCCCceeEe
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~----~~Dglidi~~~s~~vTIS~n~f~~h~k~~Li  223 (377)
                      |++.+++|+.|++|+++....   -.|.+. ++++|.|+++++..    ..|| ||+. . .+|+|++|.|..-+-++-+
T Consensus       130 l~~~~~~n~~i~git~~nsp~---~~i~i~-~c~~v~i~nv~I~~~~~~NtDG-Idi~-~-snv~I~n~~i~~gDDcIai  202 (422)
T d1rmga_         130 LRLTDVTHFSVHDIILVDAPA---FHFTMD-TCSDGEVYNMAIRGGNEGGLDG-IDVW-G-SNIWVHDVEVTNKDECVTV  202 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECCSS---CSEEEE-EEEEEEEEEEEEECCSSTTCCS-EEEE-E-EEEEEEEEEEESSSEEEEE
T ss_pred             EEEEeeeeeEEECcEecCCCc---eEEEEe-ccccEEEEeeEEcCCCCCccce-Eeec-c-cEEEEEeeEEEcCCCcccc
Confidence            678889999999999998653   357886 78999999999964    3588 8984 3 4899999999988777766


Q ss_pred             cCCCCCCCCcceeEEEecceecCCC-------CCCCccccCeeEEEcceEEcC
Q 017111          224 GADPSHVADRCIRVTIHHCFFDGTR-------QRHPRVRYAKVHLYNNYTRNW  269 (377)
Q Consensus       224 G~~d~~~~d~~~~VT~hhNlf~~~~-------~R~Pr~r~G~~hv~NN~~~n~  269 (377)
                      .+.       ..+|++.++++....       .+..-++  .+.+.|+++.+.
T Consensus       203 ks~-------s~nI~i~n~~c~~g~GisiGs~g~~~~V~--nV~v~n~~~~~s  246 (422)
T d1rmga_         203 KSP-------ANNILVESIYCNWSGGCAMGSLGADTDVT--DIVYRNVYTWSS  246 (422)
T ss_dssp             EEE-------EEEEEEEEEEEESSSEEEEEEECTTEEEE--EEEEEEEEEESS
T ss_pred             CCC-------CccEEEEeeEEccccceeEeeccCCCCEE--EEEEEeEEEeCC
Confidence            542       125677665554321       1222222  356667666654

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.61  E-value=0.00017  Score=68.64  Aligned_cols=132  Identities=15%  Similarity=0.152  Sum_probs=88.8

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----------------CCCCceEeeeCCceEEEe
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVS  210 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----------------~~Dglidi~~~s~~vTIS  210 (377)
                      |.+..++||.|++|+++....   =.+.+. .+++|+||++++..                 ..|| ||+ ..+++|+|.
T Consensus       107 i~~~~~~nv~i~~i~l~nsp~---w~~~~~-~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDG-iDi-~~s~nv~I~  180 (349)
T d1hg8a_         107 VVQKTTGNSKITNLNIQNWPV---HCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVTLD  180 (349)
T ss_dssp             EEEEEESSEEEESCEEECCSS---EEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEEEE
T ss_pred             EEEeccCCeEEEeeEEeCCCc---eEEEEe-ccceEEEEEEEEECCCcccccccccCccccCCCCe-Eee-CCCCeEEEE
Confidence            455679999999999998653   357776 79999999999843                 4699 899 578999999


Q ss_pred             CceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC----CccccC---eeEEEcceEEcCccceeee--c--C-
Q 017111          211 RCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH----PRVRYA---KVHLYNNYTRNWGIYAVCA--S--V-  278 (377)
Q Consensus       211 ~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~----Pr~r~G---~~hv~NN~~~n~~~~ai~~--~--~-  278 (377)
                      +|.|...+-+.-+...        .+|++-+|+|.+...-.    -....+   .+++.|+.+.+.. +++..  .  . 
T Consensus       181 n~~i~~gDD~iaik~~--------~ni~i~n~~~~~ghg~sigs~G~~~~~~v~nV~v~n~~~~~~~-~g~rIKs~~g~g  251 (349)
T d1hg8a_         181 NNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCRIKSNSGAT  251 (349)
T ss_dssp             EEEEECSSCSEEESSE--------EEEEEEEEEEESSCCEEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEEEEEETTCC
T ss_pred             eeeecCCCCceEeccc--------cceEEEEEEEeCCcccccccCCCcccccEEEEEEEcceecCCc-ceEEEEEEcCCC
Confidence            9999987766666432        37888888886432110    000111   4688888887642 23211  1  1 


Q ss_pred             --CceEEEEceeEecCCc
Q 017111          279 --DSQIYSQCNIYEAGQK  294 (377)
Q Consensus       279 --~a~v~~e~N~F~~g~~  294 (377)
                        =..|.+|+..++....
T Consensus       252 G~v~nI~~~ni~~~~v~~  269 (349)
T d1hg8a_         252 GTINNVTYQNIALTNIST  269 (349)
T ss_dssp             EEEEEEEEEEEEEEEEEE
T ss_pred             ccEEEeEEEEEEEcCccc
Confidence              1356677777776543

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.61  E-value=0.0014  Score=61.87  Aligned_cols=90  Identities=18%  Similarity=0.348  Sum_probs=61.9

Q ss_pred             eccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecC-CCcee-EecC
Q 017111          153 CEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTM-LIGA  225 (377)
Q Consensus       153 a~NVIIRnL~ir~g~-----~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~-h~k~~-LiG~  225 (377)
                      ++||.|+||+|....     ....|||.+. .+++|+|..|.|. ..|..|.++ ...+|+|++|.+.. |...+ -+|.
T Consensus       130 ~~nv~i~nv~I~~~~~~~~~~~NtDGidi~-~s~nv~I~n~~i~-~gDDcIaik-~g~ni~i~n~~c~~~~g~sigslG~  206 (336)
T d1nhca_         130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVK-NQDDCIAIN-SGESISFTGGTCSGGHGLSIGSVGG  206 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEE-SSSEEEEES-SEEEEEEESCEEESSSEEEEEEESS
T ss_pred             eeEEEEEEEEEECcCCCccccCCCceEEcC-CccCEeEecceEe-ecCCcEEee-ccceEEEEEeeecccccceeeeccc
Confidence            567777777776542     2346999996 7899999999998 555569996 45789999998864 32222 2453


Q ss_pred             CCCCCCCcceeEEEecceecCCC
Q 017111          226 DPSHVADRCIRVTIHHCFFDGTR  248 (377)
Q Consensus       226 ~d~~~~d~~~~VT~hhNlf~~~~  248 (377)
                      ..   .+.-.+|+|.++.|.+..
T Consensus       207 ~~---~~~v~nV~v~n~~~~~t~  226 (336)
T d1nhca_         207 RD---DNTVKNVTISDSTVSNSA  226 (336)
T ss_dssp             SS---CCEEEEEEEEEEEEESCS
T ss_pred             cc---cccEEEEEEEeceeeCCC
Confidence            21   122248999999887653

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.58  E-value=0.00044  Score=65.55  Aligned_cols=130  Identities=15%  Similarity=0.200  Sum_probs=86.6

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---------CCCCceEeeeCCceEEEeCceecCCC
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHD  218 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~---------~~Dglidi~~~s~~vTIS~n~f~~h~  218 (377)
                      |.+.+++||.|++|+|+....+   .|.+.  ++||.|++..+..         ..|| ||+ ..+.+|+|.+|.|..-+
T Consensus       103 i~~~~~~nv~i~giti~nsp~~---~i~i~--~~nv~i~nv~I~~~~~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gD  175 (336)
T d1nhca_         103 MYIHDVEDSTFKGINIKNTPVQ---AISVQ--ATNVHLNDFTIDNSDGDDNGGHNTDG-FDI-SESTGVYISGATVKNQD  175 (336)
T ss_dssp             EEEEEEEEEEEESCEEECCSSC---CEEEE--EEEEEEESCEEECTTHHHHTCCSCCS-EEE-CSCEEEEEESCEEESSS
T ss_pred             EEEeccCCcEEEeEEEEcCCce---EEEEe--eeEEEEEEEEEECcCCCccccCCCce-EEc-CCccCEeEecceEeecC
Confidence            7888999999999999987544   46664  6799999999863         4699 899 57899999999999877


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCC-------CCCccccCeeEEEcceEEcCccceeee----cCC---ceEEE
Q 017111          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRVRYAKVHLYNNYTRNWGIYAVCA----SVD---SQIYS  284 (377)
Q Consensus       219 k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~r~G~~hv~NN~~~n~~~~ai~~----~~~---a~v~~  284 (377)
                      -+.-+...        .++++-++.+.....       ....-..-.+++.|+.+.+.. +++..    +.+   ..|.+
T Consensus       176 DcIaik~g--------~ni~i~n~~c~~~~g~sigslG~~~~~~v~nV~v~n~~~~~t~-~G~rIKt~~~~~G~v~nV~f  246 (336)
T d1nhca_         176 DCIAINSG--------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITY  246 (336)
T ss_dssp             EEEEESSE--------EEEEEESCEEESSSEEEEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEE
T ss_pred             CcEEeecc--------ceEEEEEeeecccccceeeeccccccccEEEEEEEeceeeCCC-ceeEEEEecCCCceEeeEEE
Confidence            77766542        257776665533211       110000115688888887753 34321    112   25666


Q ss_pred             EceeEecCC
Q 017111          285 QCNIYEAGQ  293 (377)
Q Consensus       285 e~N~F~~g~  293 (377)
                      |+...+...
T Consensus       247 ~ni~~~~V~  255 (336)
T d1nhca_         247 SNIQLSGIT  255 (336)
T ss_dssp             EEEEEEEES
T ss_pred             EeEEEeccc
Confidence            666666654

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.56  E-value=0.0015  Score=60.05  Aligned_cols=129  Identities=10%  Similarity=0.056  Sum_probs=74.4

Q ss_pred             CCCCCceEEecC-CCCCCC-------hhHHHhhhcCCCeEEEEEeceEEEecc------eeEec------cCcceeeccc
Q 017111           80 GGLHGPLYHVTT-LADDGP-------GSLREGCRMKEPLWIVFEVSGTIHLRS------HLSVS------SYKTIDGRGQ  139 (377)
Q Consensus        80 GG~gG~vv~VT~-l~dsg~-------GSLr~Ai~~~~Pr~IVf~vsG~I~l~~------~l~V~------sn~TI~G~G~  139 (377)
                      |=.-+++|+|.. -+|++.       .+|++|++...|...|+--.|+.....      .+.+.      ..+||.+.+.
T Consensus        10 ~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~~i~i~~~~~   89 (400)
T d1ru4a_          10 GISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANC   89 (400)
T ss_dssp             TCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGG
T ss_pred             ccccCCeEEECCCCcCCCCCCccccHHHHHHHHHhCCCcCEEEEcCceeecceeecCceEEEEecCCCCCCeEEEecCCC
Confidence            334568999974 455554       459999988766665654679886431      12221      2346666543


Q ss_pred             ce-EEeC-----------CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceE
Q 017111          140 RV-KLTG-----------KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDI  207 (377)
Q Consensus       140 g~-~I~G-----------~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~v  207 (377)
                      +. .|.+           .++.+. .++++|+++.++...   ..++.+.  ..++.|++|.|.+..+..+.+.......
T Consensus        90 ~~~vi~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~---~~~~~~~--~~~~~i~n~~i~~~~~~g~~~~~~~~~~  163 (400)
T d1ru4a_          90 GRAVFDFSFPDSQWVQASYGFYVT-GDYWYFKGVEVTRAG---YQGAYVI--GSHNTFENTAFHHNRNTGLEINNGGSYN  163 (400)
T ss_dssp             CCEEEECCCCTTCCCTTCCSEEEC-SSCEEEESEEEESCS---SCSEEEC--SSSCEEESCEEESCSSCSEEECTTCCSC
T ss_pred             CeeEEeCCccccccccccceEEEe-cCcEEEecceeecCc---ceeeeec--ccccccccceEecCCcceEEEecccccc
Confidence            33 3322           124554 789999999999753   2344443  4456677777776655555554334444


Q ss_pred             EEeCcee
Q 017111          208 TVSRCHF  214 (377)
Q Consensus       208 TIS~n~f  214 (377)
                      .+..|.+
T Consensus       164 ~~~~~~~  170 (400)
T d1ru4a_         164 TVINSDA  170 (400)
T ss_dssp             EEESCEE
T ss_pred             EEEEeeE
Confidence            4444443

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=97.20  E-value=0.0011  Score=64.20  Aligned_cols=44  Identities=20%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             EEeeeccEEEeeeEEeCCCCCCCC------ceEecCCCceEEEEceeeecC
Q 017111          149 RLKECEHVIICNLEFEGGKGPDVD------AIQIKPKSKHIWIDRCSLRDY  193 (377)
Q Consensus       149 ~i~~a~NVIIRnL~ir~g~~~~~D------aI~i~~~s~nVwIDHcs~s~~  193 (377)
                      ....++++.|.+..|+.....+.+      ++... .+++++|+||.|...
T Consensus        96 ~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~-~~~n~~I~~n~~~~~  145 (481)
T d1ofla_          96 VAIYGSYNRITACVFDCFDEANSAYITTSLTEDGK-VPQHCRIDHCSFTDK  145 (481)
T ss_dssp             EEECSSSCEEESCEEESCCSSCSCSEEECCCTTCC-CCCSCEEESCEEECC
T ss_pred             EEeEeecceEeeeEeecccccccceeccceeEEEe-eccceEEECceEecC
Confidence            334477888888888875432222      22222 467889999999753

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.17  E-value=0.0044  Score=58.81  Aligned_cols=113  Identities=13%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             CceEecCCCceEEEEceeeecC-------CCCceEeeeCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecce
Q 017111          172 DAIQIKPKSKHIWIDRCSLRDY-------DDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHCF  243 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s~~-------~Dglidi~~~s~~vTIS~n~f~~h~k~~L-iG~~d~~~~d~~~~VT~hhNl  243 (377)
                      -++.|..+++||+|-|..|...       .|. |.+ .++++|-|-.|.|+.-....| .+..      ..-+||+-+|+
T Consensus       124 ~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da-I~i-~~s~nVwIDH~s~s~~~d~~~~~~~~------~s~~vTis~~~  195 (359)
T d1idka_         124 KGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTS------ADNRVSLTNNY  195 (359)
T ss_dssp             CCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCC------TTCEEEEESCE
T ss_pred             CceEEEecCceEEEECcEEecCCCCCCCCCCe-EEe-eCCccEEEEeeeeccCCCCceeeecc------CCCceeeecee
Confidence            4566644689999999999754       355 777 478999999999874322222 2211      11379999999


Q ss_pred             ecCCCCCCCccc----------c--CeeEEEcceEEcCccceeeecCCceEEEEceeEecC
Q 017111          244 FDGTRQRHPRVR----------Y--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (377)
Q Consensus       244 f~~~~~R~Pr~r----------~--G~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g  292 (377)
                      |...........          .  ..+-+.+|+|.+.....-..+.+.++.+.||||.+.
T Consensus       196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1idka_         196 IDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDI  256 (359)
T ss_dssp             EECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEE
T ss_pred             eeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceecccceEEEECcEEECc
Confidence            976655543321          1  257899999998776666667777888999999864

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.13  E-value=0.0023  Score=60.65  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=77.6

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEe------eeCCceEEEeCceecCCC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI------TRESTDITVSRCHFSSHD  218 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi------~~~s~~vTIS~n~f~~h~  218 (377)
                      +.+|.|.+++||+|.|..|..+.   +..|.+..++++|-|..|.|+.....++.-      ..+..+||+-+|+|.++.
T Consensus       150 gDai~i~~s~nvwIDH~s~s~~~---D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~  226 (346)
T d1pxza_         150 GDAITMRNVTNAWIDHNSLSDCS---DGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNA  226 (346)
T ss_dssp             CCSEEEESCEEEEEESCEEECCS---SEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSE
T ss_pred             CceeeeecCceEEEECcEeeccc---cCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCc
Confidence            46789989999999999999642   244666557899999999997632222111      012346999999997542


Q ss_pred             -cee-EecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcC
Q 017111          219 -KTM-LIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW  269 (377)
Q Consensus       219 -k~~-LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~  269 (377)
                       ..+ +...         -.+.+-+|+|.+.....=..+. +++.+.||||.+.
T Consensus       227 ~r~~p~~r~---------g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~  271 (346)
T d1pxza_         227 GQRMPRARY---------GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP  271 (346)
T ss_dssp             EECTTEEES---------SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECC
T ss_pred             ccCCCcccc---------ceEEEECcEeecCccEEEeccCceEEEEEeeEEECC
Confidence             111 2111         2678899999987766544543 5789999999864

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=97.03  E-value=0.0018  Score=61.44  Aligned_cols=140  Identities=12%  Similarity=0.059  Sum_probs=90.9

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCC---------CCCc-eEecCCCceEEEEceeeecCCCCceEeee---CCceEEEeC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGP---------DVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITR---ESTDITVSR  211 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~---------~~Da-I~i~~~s~nVwIDHcs~s~~~Dglidi~~---~s~~vTIS~  211 (377)
                      +.+|.+..++||+|.|.+|..+...         -.|+ +.|...+.+|-|-.|-|.+...+.+.-..   ..++||+-+
T Consensus       130 ~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~~~~~~~vT~hh  209 (353)
T d1o88a_         130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSSSCCCCEEEEES
T ss_pred             CcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcccccccccceeCCccCcCCceEEEEe
Confidence            4679999999999999999865321         0222 33444677787777777765444443221   245899999


Q ss_pred             ceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEcCccce---eeecCCceEEEEc
Q 017111          212 CHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYA---VCASVDSQIYSQC  286 (377)
Q Consensus       212 n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~a---i~~~~~a~v~~e~  286 (377)
                      |+|.++. +.-++..         -.+-+.+|+|.+.....-..+. +.+.+.||||.+...-.   ........+...+
T Consensus       210 N~~~~~~~R~P~~~~---------g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~p~~~~~~~~~~g~~~~~~  280 (353)
T d1o88a_         210 NYYNDVNARLPLQRG---------GLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKG  280 (353)
T ss_dssp             CEEEEEEECSCEEES---------SEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECSSSSSCCEEEEES
T ss_pred             eEEcCCccCCcceec---------ceEEEEEEEEecccceEEecCCCceEEEEeeEEecccCCccccccCCcceeEEECC
Confidence            9998542 1223322         1567889999887766545554 57899999999764311   1223345677788


Q ss_pred             eeEecCC
Q 017111          287 NIYEAGQ  293 (377)
Q Consensus       287 N~F~~g~  293 (377)
                      |+|....
T Consensus       281 n~~~~~~  287 (353)
T d1o88a_         281 NNITKPA  287 (353)
T ss_dssp             CSCCSTT
T ss_pred             Ceeeccc
Confidence            8887654

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=96.89  E-value=0.002  Score=60.99  Aligned_cols=114  Identities=17%  Similarity=0.259  Sum_probs=74.8

Q ss_pred             EEEeeec-cEEEeeeEEeCCC------CCCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceecCCCce
Q 017111          148 LRLKECE-HVIICNLEFEGGK------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (377)
Q Consensus       148 l~i~~a~-NVIIRnL~ir~g~------~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~h~k~  220 (377)
                      |.+..++ ||.|+||+|....      ....|||.+.  +++|+|.+|.+.-+.| .|.++. ..+|+|++|.+..- .+
T Consensus       120 ~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi~--s~nV~I~n~~i~~gDD-cIaik~-g~ni~i~n~~c~~g-hG  194 (333)
T d1k5ca_         120 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS--ANNVTIQNCIVKNQDD-CIAIND-GNNIRFENNQCSGG-HG  194 (333)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEEE--CSSEEEESCEEESSSC-SEEEEE-EEEEEEESCEEESS-CC
T ss_pred             EEEecccCcEEEEeEEEEeeecCCCccCCCcceEeEe--cceEEEEecEEecCCC-EEEEcC-ccEEEEEEEEECCC-Cc
Confidence            4444443 7888888887632      2346999994  6899999999977655 699965 57999999998742 26


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCCCCCCCcc------ccCe---eEEEcceEEcC
Q 017111          221 MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV------RYAK---VHLYNNYTRNW  269 (377)
Q Consensus       221 ~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~------r~G~---~hv~NN~~~n~  269 (377)
                      +-||+-...  +.-.+|++.++.|.++. +.-|+      +.|.   +.+.|..+++.
T Consensus       195 isiGS~g~~--~~V~nV~v~n~~~~~t~-~G~rIKt~~~~~~G~v~nI~f~ni~m~~v  249 (333)
T d1k5ca_         195 ISIGSIATG--KHVSNVVIKGNTVTRSM-YGVRIKAQRTATSASVSGVTYDANTISGI  249 (333)
T ss_dssp             EEEEEECTT--CEEEEEEEESCEEEEEE-EEEEEEEETTCCSCEEEEEEEESCEEEEE
T ss_pred             eeeecccCC--CcEEEEEEEEeEEeCCc-EEEEEEEccCCCceEEEEEEEEEEEEECc
Confidence            777753211  11248999999887643 33333      2233   35556555554

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.72  E-value=0.028  Score=52.85  Aligned_cols=121  Identities=12%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             ChhHHHhhhc----CCCeEEEEEeceEEEecceeEec-cCcceeecccceEEe-C-------------------CcEEEe
Q 017111           97 PGSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQRVKLT-G-------------------KGLRLK  151 (377)
Q Consensus        97 ~GSLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~-sn~TI~G~G~g~~I~-G-------------------~gl~i~  151 (377)
                      --++++||+.    ..|++ ||--.|+.  .+.|.|. +++||+|+|..-++. +                   ..+.+ 
T Consensus        18 f~TIq~AI~a~p~~~~~~v-I~I~~G~Y--~E~V~I~k~~itl~G~~~~~tiI~~~~~~~~~~~~~~~~~t~~sat~~v-   93 (342)
T d1qjva_          18 FKTIADAIASAPAGSTPFV-ILIKNGVY--NERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITI-   93 (342)
T ss_dssp             BSSHHHHHHTSCSSSSCEE-EEECSEEE--CCCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEE-
T ss_pred             chhHHHHHHhCccCCceEE-EEEcCeEE--EEEEEEcCCCeEEEEcCCCCcEEEecccccccccCCCcccccceeeEEE-
Confidence            3458888875    34444 44467988  5678886 689999997544442 2                   12455 


Q ss_pred             eeccEEEeeeEEeCCCC-----------------CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCcee
Q 017111          152 ECEHVIICNLEFEGGKG-----------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHF  214 (377)
Q Consensus       152 ~a~NVIIRnL~ir~g~~-----------------~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f  214 (377)
                      .+++++++||+|+....                 ...-||.|...++.+-+-+|.|.-..|-|++-.   ..--+.+|.|
T Consensus        94 ~a~~f~a~nitf~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~~~gD~~~fy~C~f~G~QDTL~~~~---gr~y~~~c~I  170 (342)
T d1qjva_          94 SAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSG---GRSFFSDCRI  170 (342)
T ss_dssp             CSSSCEEEEEEEEECCCHHHHHTSCTTCTTCCSCCCCCSEEECTTCCSEEEEEEEEECSTTCEEECS---SEEEEESCEE
T ss_pred             eeCCeEEEeeEEecCCccccccccccccccccCCCceEEEEeecCCCceeEEeeeeccccceeEeCC---CCEEEEeeEE
Confidence            48999999999997421                 123466664356789999999999999877642   3456677777


Q ss_pred             cCCCceeEecC
Q 017111          215 SSHDKTMLIGA  225 (377)
Q Consensus       215 ~~h~k~~LiG~  225 (377)
                      ... -=+++|.
T Consensus       171 eG~-vDFIfG~  180 (342)
T d1qjva_         171 SGT-VDFIFGD  180 (342)
T ss_dssp             EES-EEEEEES
T ss_pred             ecc-CcEEecC
Confidence            532 3345554

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=96.62  E-value=0.05  Score=51.09  Aligned_cols=150  Identities=19%  Similarity=0.097  Sum_probs=80.7

Q ss_pred             CceEecCCCceEEEEceeeecCCC---------------CceEeeeCCceEEEeCceecCCC-ceeEecC-C--CCCCCC
Q 017111          172 DAIQIKPKSKHIWIDRCSLRDYDD---------------GLIDITRESTDITVSRCHFSSHD-KTMLIGA-D--PSHVAD  232 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s~~~D---------------glidi~~~s~~vTIS~n~f~~h~-k~~LiG~-~--d~~~~d  232 (377)
                      -+|.|. +++||+|-|..|....|               ..|.+ .++++|-|-.|-|+... ..+-+.. .  .....|
T Consensus        96 ~gl~i~-~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~-~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~d  173 (355)
T d1pcla_          96 GSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHD  173 (355)
T ss_pred             CEEEEE-ccccEEEEeeEeecCcccCCccccCCCcCccCceEEe-cCCccEEEECcccccCccccccccccccccccccc
Confidence            456675 68999999999975432               12444 34666666666665211 0000000 0  000011


Q ss_pred             -------cceeEEEecceecCCCCCCCc--------cccC--eeEEEcceEEcCccceeeecCCceEEEEceeEecCCcc
Q 017111          233 -------RCIRVTIHHCFFDGTRQRHPR--------VRYA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKK  295 (377)
Q Consensus       233 -------~~~~VT~hhNlf~~~~~R~Pr--------~r~G--~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g~~~  295 (377)
                             ..-.||+-+|+|.+...-+.-        ...+  .+-+.+|||.+.....=..+ ..++.+.||||.+....
T Consensus       174 g~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r-~G~~hv~NN~~~n~~~~  252 (355)
T d1pcla_         174 GALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVR-FGSIHAYNNVYLGDVKH  252 (355)
T ss_pred             ceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCccc-ccEEEEECcEEECCCCc
Confidence                   123799999999764322211        1111  46788999988665442233 23678889999876542


Q ss_pred             ceeeeeccccCCcccCCCceEEecCCeeecccc
Q 017111          296 MAFKYLTEKASDKEEARTDCIRSEGDLSSLKLK  328 (377)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~G~~~~~gn~~~ng~~  328 (377)
                      .....+..    ......+.+..++|.|..+..
T Consensus       253 ~~~~~~y~----~~~~~~~~v~~e~NyF~~~~~  281 (355)
T d1pcla_         253 SVYPYLYS----FGLGTSGSILSESNSFTLSNL  281 (355)
T ss_pred             ccccceee----eccCcCceEEEeCCEEECCCC
Confidence            21110000    111234567788888887654

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=96.58  E-value=0.024  Score=53.68  Aligned_cols=114  Identities=16%  Similarity=0.210  Sum_probs=75.3

Q ss_pred             CceEecCCCceEEEEceeeecCC------CCceEeeeCCceEEEeCceecCC-CceeEecCCCCCCCCcceeEEEeccee
Q 017111          172 DAIQIKPKSKHIWIDRCSLRDYD------DGLIDITRESTDITVSRCHFSSH-DKTMLIGADPSHVADRCIRVTIHHCFF  244 (377)
Q Consensus       172 DaI~i~~~s~nVwIDHcs~s~~~------Dglidi~~~s~~vTIS~n~f~~h-~k~~LiG~~d~~~~d~~~~VT~hhNlf  244 (377)
                      .++.+..+++||+|-|..|....      +..|.+ .++++|=|-.|.|+.- +..++...      ...-.||+-.|+|
T Consensus       124 ~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i-~~s~nvwIDH~s~s~~~d~~~~~~~------~~s~~vTvs~~~f  196 (359)
T d1qcxa_         124 KGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITV-DDSDLVWIDHVTTARIGRQHIVLGT------SADNRVTISYSLI  196 (359)
T ss_dssp             CCEEEETTCCCEEEESCEEEEECTTEETSCCSEEE-ESCCCEEEESCEEEEESSCSEEECS------SCCEEEEEESCEE
T ss_pred             cceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEe-eCCCCEEEEeeeccccCCCceEeec------cCCCceEeeccEe
Confidence            45555347899999999998643      234677 4678888888888621 11222211      1123799999999


Q ss_pred             cCCCCCCCcc----------ccC--eeEEEcceEEcCccceeeecCCceEEEEceeEecC
Q 017111          245 DGTRQRHPRV----------RYA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (377)
Q Consensus       245 ~~~~~R~Pr~----------r~G--~~hv~NN~~~n~~~~ai~~~~~a~v~~e~N~F~~g  292 (377)
                      ..........          ..+  .+.+.+|+|.+.....-..+.+..+.+.||||.+-
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1qcxa_         197 DGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNF  256 (359)
T ss_dssp             ECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEE
T ss_pred             ccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCc
Confidence            7755543222          112  47899999998766655556666688899999874

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=96.57  E-value=0.0049  Score=57.87  Aligned_cols=109  Identities=17%  Similarity=0.278  Sum_probs=76.2

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeecccceEE-eCC-------------cEEEeeeccEE
Q 017111           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-------------GLRLKECEHVI  157 (377)
Q Consensus        99 SLr~Ai~~----~~Pr~IVf~vsG~I~l~~~l~V~---sn~TI~G~G~g~~I-~G~-------------gl~i~~a~NVI  157 (377)
                      ++++||++    ...+++|+--.|+.  .+.|.|.   +|+||+|.|..-++ ...             .+.+ .+++++
T Consensus        21 TIq~AIda~p~~~~~~~~I~I~~G~Y--~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~~v-~~~~f~   97 (319)
T d1gq8a_          21 TVSEAVAAAPEDSKTRYVIRIKAGVY--RENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAA-VGAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEE--ECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEE-CSTTCE
T ss_pred             CHHHHHhhCccCCCCcEEEEEcCceE--EEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccceee-ecCCeE
Confidence            47788865    33455555567988  4678884   58999999865443 321             2445 479999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeeeCCceEEEeCceec
Q 017111          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (377)
Q Consensus       158 IRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~  215 (377)
                      ++||+|+...+   ...-|+.+.  ++++.+.+|.|.-..|-|++-   ...--+.+|.|.
T Consensus        98 a~nitf~Nt~g~~~~QAvAl~v~--gd~~~fy~c~f~G~QDTL~~~---~gr~yf~~c~Ie  153 (319)
T d1gq8a_          98 ARDITFQNTAGAAKHQAVALRVG--SDLSAFYRCDILAYQDSLYVH---SNRQFFINCFIA  153 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEEC--CTTEEEEEEEEECSTTCEEEC---SSEEEEESCEEE
T ss_pred             EEeeEEEeCCCCCCCcEEEEEec--CcceEEEcceecccCCeeEEC---CCCEEEEeeEEE
Confidence            99999997542   223567774  678999999999999998764   235566777776

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.029  Score=53.82  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCC--------------CCCceEecCCCceEEEEceeeecCCCCceEeee-------C
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGP--------------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-------E  203 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~--------------~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~-------~  203 (377)
                      +..|.|.+++||+|-|.+|..+...              -+..|.|..++++|=|-+|-|......+|.-..       +
T Consensus       183 ~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g  262 (399)
T d1bn8a_         183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTT
T ss_pred             CceEEEecCccEEEECceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccC
Confidence            5678898999999999999865311              123455665788999999999865444443221       1


Q ss_pred             CceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCC--C---c--cc-cCeeEEEcceEEcCc
Q 017111          204 STDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--P---R--VR-YAKVHLYNNYTRNWG  270 (377)
Q Consensus       204 s~~vTIS~n~f~~h~k-~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--P---r--~r-~G~~hv~NN~~~n~~  270 (377)
                      ...||+-+|+|.+..- .=++..         -++-+.+|+|.+.....  |   .  .+ .+++-+.||||.+..
T Consensus       263 ~~~vT~hhN~f~~~~~R~Prvr~---------g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~EgN~F~~~~  329 (399)
T d1bn8a_         263 KLKITLHHNRYKNIVQRAPRVRF---------GQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPG  329 (399)
T ss_dssp             CCCEEEESCEEEEEEECSSEESS---------CEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTT
T ss_pred             CceEEEEeeEecCccccCccccc---------cEEEEEccEeECCCcccccccceeeccccCceEEEEeeEEECCC
Confidence            2379999999974321 112211         14667799998765421  1   1  12 257889999998753

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=95.99  E-value=0.035  Score=52.46  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             eeeEEeCCC--CCCCCceEecCCCceEEEEceeeec-----CCCCceEeeeCCceEEEeCceecCCCceeEecCCCCCCC
Q 017111          159 CNLEFEGGK--GPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA  231 (377)
Q Consensus       159 RnL~ir~g~--~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dglidi~~~s~~vTIS~n~f~~h~k~~LiG~~d~~~~  231 (377)
                      +|++|++..  ......|.+. .+++|.|+++++..     ..|| ||+ ..+.+|+|++|.|...+-++.+.+....  
T Consensus       160 ~nv~i~~iti~ns~~~~~~~~-~~~~v~i~n~~I~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gDD~i~~ks~~~~--  234 (376)
T d1bhea_         160 KNFTLYNVSLINSPNFHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNVAIKAYKGR--  234 (376)
T ss_dssp             EEEEEEEEEEECCSSCSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSEEEEECTTS--
T ss_pred             ccEEEEeeEEecCCceEEEEe-CCceEEEEeEeccCCccCCCcce-eec-cccceEEEEeceeecCCCceeeecccCC--
Confidence            455555432  3446677775 78999999999864     3688 898 5789999999999887766655432111  


Q ss_pred             CcceeEEEecceecCCCCCCCccc---cC--eeEEEcceEEcCccceeee--cC--C---ceEEEEceeEecCCccc
Q 017111          232 DRCIRVTIHHCFFDGTRQRHPRVR---YA--KVHLYNNYTRNWGIYAVCA--SV--D---SQIYSQCNIYEAGQKKM  296 (377)
Q Consensus       232 d~~~~VT~hhNlf~~~~~R~Pr~r---~G--~~hv~NN~~~n~~~~ai~~--~~--~---a~v~~e~N~F~~g~~~~  296 (377)
                      ....+|++.+|.|....  .-.+.   .|  .+.+.|+.+++.. .++..  ..  +   ..|.+|+..++....+.
T Consensus       235 ~~~~ni~i~n~~~~~~~--g~~iGs~~~~v~nv~i~n~~~~~~~-~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi  308 (376)
T d1bhea_         235 AETRNISILHNDFGTGH--GMSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPI  308 (376)
T ss_dssp             CCEEEEEEEEEEECSSS--CEEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEEEEESCSEEE
T ss_pred             CCcceEEEEeeEEecCC--CceeccccCCEEEEEEEeeeEcCCC-ceEEEEecCCCccEEEEEEEEeEEEeccCccE
Confidence            11247899998886532  11221   11  4678888887653 34422  11  1   24666666666655443

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=95.93  E-value=0.014  Score=55.29  Aligned_cols=77  Identities=12%  Similarity=0.036  Sum_probs=56.4

Q ss_pred             cCcceeecccceEEeCC---cEEEeeeccEEEeeeEEeC--CCCCCCCceEecCCCceEEEEceeeecCCCCceEeeeCC
Q 017111          130 SYKTIDGRGQRVKLTGK---GLRLKECEHVIICNLEFEG--GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRES  204 (377)
Q Consensus       130 sn~TI~G~G~g~~I~G~---gl~i~~a~NVIIRnL~ir~--g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~~s  204 (377)
                      +|++|.|    ++|...   .+.+..++||.+++++++.  .+....|||.+   +++|+|++|.+.- .|..|.++  +
T Consensus       132 ~n~~i~g----iti~~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~---~~~~~i~~~~~~~-gDD~i~~~--s  201 (373)
T d1ogmx2         132 QTWYCVG----PTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI---YPNSVVHDVFWHV-NDDAIKIY--Y  201 (373)
T ss_dssp             EEEEEES----CEEECCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC---CTTCEEEEEEEEE-SSCSEECC--S
T ss_pred             eEEEEeC----EEEECCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec---cCCEEEEeeEEec-CCCEEEec--C
Confidence            3555554    355443   4677789999999999974  33445788766   4689999999985 55558885  6


Q ss_pred             ceEEEeCceecC
Q 017111          205 TDITVSRCHFSS  216 (377)
Q Consensus       205 ~~vTIS~n~f~~  216 (377)
                      .+++|++|.|..
T Consensus       202 ~~i~v~n~~~~~  213 (373)
T d1ogmx2         202 SGASVSRATIWK  213 (373)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            799999999874

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=95.91  E-value=0.023  Score=53.13  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCc--eEeeeC----CceEEEeCceecCCCc
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL--IDITRE----STDITVSRCHFSSHDK  219 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dgl--idi~~~----s~~vTIS~n~f~~h~k  219 (377)
                      .||.+..++||.|+|-.|+.+    +|+|.+. .+++|+|..|.+.... |.  ..+...    ..+|++++|.|.+...
T Consensus       153 DGidi~~s~nV~I~n~~i~tg----DDcIaik-s~~ni~i~n~~c~~~h-G~sigslG~~~~~~v~nV~v~n~~i~~t~~  226 (335)
T d1czfa_         153 DAFDVGNSVGVNIIKPWVHNQ----DDCLAVN-SGENIWFTGGTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSEN  226 (335)
T ss_dssp             CSEEECSCEEEEEESCEEECS----SCSEEES-SEEEEEEESCEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEecCCCeEEEEeeEEecC----CceEEec-CceEEEEEEEEEECCC-CccccccCCCCcCCEeEEEEEeeEEECCCc
Confidence            689998889999999999965    6999997 6799999999886532 31  122111    3699999999998776


Q ss_pred             eeEe
Q 017111          220 TMLI  223 (377)
Q Consensus       220 ~~Li  223 (377)
                      ++.|
T Consensus       227 g~rI  230 (335)
T d1czfa_         227 AVRI  230 (335)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            6655

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=95.67  E-value=0.013  Score=55.04  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeee---C--CceEEEeCceecCCCce
Q 017111          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR---E--STDITVSRCHFSSHDKT  220 (377)
Q Consensus       146 ~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dglidi~~---~--s~~vTIS~n~f~~h~k~  220 (377)
                      .||.+. ++||.|+|-.|+.+    +|+|.|. .++||+|+.|.+..+. | |.+..   +  ..+|+|++|.|.+...+
T Consensus       151 DGidi~-s~nV~I~n~~i~~g----DDcIaik-~g~ni~i~n~~c~~gh-G-isiGS~g~~~~V~nV~v~n~~~~~t~~G  222 (333)
T d1k5ca_         151 DGFDVS-ANNVTIQNCIVKNQ----DDCIAIN-DGNNIRFENNQCSGGH-G-ISIGSIATGKHVSNVVIKGNTVTRSMYG  222 (333)
T ss_dssp             CSEEEE-CSSEEEESCEEESS----SCSEEEE-EEEEEEEESCEEESSC-C-EEEEEECTTCEEEEEEEESCEEEEEEEE
T ss_pred             ceEeEe-cceEEEEecEEecC----CCEEEEc-CccEEEEEEEEECCCC-c-eeeecccCCCcEEEEEEEEeEEeCCcEE
Confidence            789995 89999999999975    6999997 6789999999998876 5 66642   2  26999999999987777


Q ss_pred             eEecC-CCCCCCCcceeEEEecceecC
Q 017111          221 MLIGA-DPSHVADRCIRVTIHHCFFDG  246 (377)
Q Consensus       221 ~LiG~-~d~~~~d~~~~VT~hhNlf~~  246 (377)
                      .-|-. ..... ..-.+|||-+..+.+
T Consensus       223 ~rIKt~~~~~~-G~v~nI~f~ni~m~~  248 (333)
T d1k5ca_         223 VRIKAQRTATS-ASVSGVTYDANTISG  248 (333)
T ss_dssp             EEEEEETTCCS-CEEEEEEEESCEEEE
T ss_pred             EEEEEccCCCc-eEEEEEEEEEEEEEC
Confidence            65532 11000 001366666655554

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=95.39  E-value=0.035  Score=52.45  Aligned_cols=131  Identities=14%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             cCcceeec---------ccceEEeCCcEEEe-eeccEEEeeeEEeCCCCC-------------CCCc-eEecCCCceEEE
Q 017111          130 SYKTIDGR---------GQRVKLTGKGLRLK-ECEHVIICNLEFEGGKGP-------------DVDA-IQIKPKSKHIWI  185 (377)
Q Consensus       130 sn~TI~G~---------G~g~~I~G~gl~i~-~a~NVIIRnL~ir~g~~~-------------~~Da-I~i~~~s~nVwI  185 (377)
                      .|++|.+.         |.+....+..|.|. +++||+|.|..|..+...             ..|+ +.+...+++|-|
T Consensus       119 Rnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTi  198 (361)
T d1pe9a_         119 RNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTI  198 (361)
T ss_dssp             ESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEE
T ss_pred             EeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeecCccceEe
Confidence            36777642         22333446778886 489999999999865311             1233 456556889999


Q ss_pred             EceeeecCCCCceEee--------eCCceEEEeCceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCC--Cc-
Q 017111          186 DRCSLRDYDDGLIDIT--------RESTDITVSRCHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--PR-  253 (377)
Q Consensus       186 DHcs~s~~~Dglidi~--------~~s~~vTIS~n~f~~h~-k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~--Pr-  253 (377)
                      -.|-|.+....+|.-.        .+..+||+-+|+|.++. +.=++..         -.+-+.+|+|.+...+.  +. 
T Consensus       199 S~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~r~---------G~~Hv~NNy~~n~~~~~~~~~~  269 (361)
T d1pe9a_         199 SNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRY---------GSIHSFNNVFKGDAKDPVYRYQ  269 (361)
T ss_dssp             ESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESS---------CEEEEESCEEEEETTCSSSCCC
T ss_pred             cCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCeeC---------ceEEEECceeecCcCccccccc
Confidence            9999976544433321        12358999999997531 1112221         14566799998765421  11 


Q ss_pred             ----cc-cCeeEEEcceEEcC
Q 017111          254 ----VR-YAKVHLYNNYTRNW  269 (377)
Q Consensus       254 ----~r-~G~~hv~NN~~~n~  269 (377)
                          .+ .+++-+.||||.+.
T Consensus       270 y~~~~~~~a~il~E~NyF~~~  290 (361)
T d1pe9a_         270 YSFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             CSEEECTTCEEEEESCEEEEE
T ss_pred             eeeecCCCCEEEEEceEEECC
Confidence                11 24688999999853

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=95.33  E-value=0.039  Score=51.71  Aligned_cols=73  Identities=14%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCc-e-Eeee----CCceEEEeCceecCCC
Q 017111          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL-I-DITR----ESTDITVSRCHFSSHD  218 (377)
Q Consensus       145 G~gl~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dgl-i-di~~----~s~~vTIS~n~f~~h~  218 (377)
                      ..||.+..++||.|+|-.|+.+    +|+|.+. .++||+|..|.+..+. |+ + .+..    ...+|++++|.|.+..
T Consensus       158 tDGidi~~s~nV~I~n~~i~~g----DDcIaik-s~~ni~i~n~~c~~gh-G~sigslG~~~~~~v~nV~v~n~~~~~t~  231 (339)
T d1ia5a_         158 TDAFDIGTSTYVTISGATVYNQ----DDCVAVN-SGENIYFSGGYCSGGH-GLSIGSVGGRSDNTVKNVTFVDSTIINSD  231 (339)
T ss_dssp             CCSEEEESCEEEEEESCEEECS----SCSEEES-SEEEEEEESCEEESSS-CEEEEEECSSSCCEEEEEEEEEEEEESCS
T ss_pred             CCccccCCCCeEEEeeeEEEcC----CCeEEec-CccEEEEEEeEEeccc-cceecccccCccccEEEEEEECCcccCCc
Confidence            3689998899999999999965    6999997 6799999999998654 41 1 1211    1368999999999877


Q ss_pred             ceeEe
Q 017111          219 KTMLI  223 (377)
Q Consensus       219 k~~Li  223 (377)
                      .++-|
T Consensus       232 ~GirI  236 (339)
T d1ia5a_         232 NGVRI  236 (339)
T ss_dssp             EEEEE
T ss_pred             ceeEE
Confidence            77655

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=94.46  E-value=0.028  Score=53.13  Aligned_cols=71  Identities=11%  Similarity=0.090  Sum_probs=53.2

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec------CCCCceEeeeCCceEEEeCceecCCCcee
Q 017111          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD------YDDGLIDITRESTDITVSRCHFSSHDKTM  221 (377)
Q Consensus       148 l~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~------~~Dglidi~~~s~~vTIS~n~f~~h~k~~  221 (377)
                      |++..++|+.|++|+++....   =.+.+. .+++|-|+.+.+..      ..|| ||+   +.+++|++|.|..-+-+.
T Consensus       126 i~~~~~~n~~i~giti~~s~~---~~~~~~-~~~~v~i~~~~i~~~~~~~~n~dg-i~~---~~~~~i~~~~~~~gDD~i  197 (373)
T d1ogmx2         126 NNLGGGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEI---YPNSVVHDVFWHVNDDAI  197 (373)
T ss_dssp             SCCCSSEEEEEESCEEECCSS---CCEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBC---CTTCEEEEEEEEESSCSE
T ss_pred             EEEEcceEEEEeCEEEECCCe---eEEEEc-cCCeEEEEEEEEEecCCCCCCCee-eec---cCCEEEEeeEEecCCCEE
Confidence            344578999999999998653   346664 68888888888852      3677 676   468999999998777766


Q ss_pred             EecCC
Q 017111          222 LIGAD  226 (377)
Q Consensus       222 LiG~~  226 (377)
                      -++++
T Consensus       198 ~~~s~  202 (373)
T d1ogmx2         198 KIYYS  202 (373)
T ss_dssp             ECCST
T ss_pred             EecCC
Confidence            66654

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=87.48  E-value=1.5  Score=39.04  Aligned_cols=36  Identities=8%  Similarity=0.088  Sum_probs=21.0

Q ss_pred             ceEEEEceeeecCCCCceEeeeCCceEEEeCceecC
Q 017111          181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (377)
Q Consensus       181 ~nVwIDHcs~s~~~Dglidi~~~s~~vTIS~n~f~~  216 (377)
                      .+..|..|.+.+..+.-+++......++|.+|.+.+
T Consensus       194 ~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~  229 (400)
T d1ru4a_         194 PGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFR  229 (400)
T ss_dssp             SCCEEESCEEESCSSCSEECTTCCSCCEEESCEEES
T ss_pred             ccceeecceeeeccCcceeEEecCCCEEEECeEEEc
Confidence            344556666655444446665555667777777664