Citrus Sinensis ID: 017120


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MNELVFSVVSEAEDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
ccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEcccEEEEEEccEEEEEEEEcccccccccEEEEEcccccHHHHHccccccEEEEEccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHcccccccccEEEEcccccccccccHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHccccccEEEEccccEEEEEEccccEEEEEEEccEEEEccccccccccccccEEEEEccccHHHHHHcccccEEEEEccEEEEcccEEEcccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHcccccccccccccccHcccccccccccEEEcccccccHHHHHHHHHHHcc
MNELVFSVVSeaedqnempqkepeigaekcdlftgdwvpnlkgpvytnascplieshqncmgngrpdsgylywrwrpencelppfnaeNFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYhdeeyrskrwhfpsynfsvsviwspflakaaifedyngvstsEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKssiyyendtvvgchycpkrnltelGFDFAYRKTLSSVMDFIAASKHKGLVFfrtstpdhfengewhnggscqkmmpvkegdieLKDLNRILRNIELeefekavprasqngvklklldftnllllrpdghpgayrefqpfakdkdakvqndclhwclpgpidtwnDLIMETVVNG
MNELVFSVvseaedqnempqkepeIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDhfengewhnggscqkmmpVKEGDIELKDLNRILRNIELeefekavprasqngvklKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLpgpidtwnDLIMETVVNG
MNELVFSVVSEAEDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKlklldftnllllRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
***************************EKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETV***
*******************************LFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQ**********QNDCLHWCLPGPIDTWNDLIMETVVN*
MNELVFSVVSE************EIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
****************************KCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNELVFSVVSEAEDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPxxxxxxxxxxxxxxxxxxxxxEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
224072162462 predicted protein [Populus trichocarpa] 0.952 0.777 0.756 1e-169
224058361429 predicted protein [Populus trichocarpa] 0.938 0.825 0.768 1e-167
255537733462 conserved hypothetical protein [Ricinus 0.973 0.794 0.737 1e-166
297745405420 unnamed protein product [Vitis vinifera] 0.954 0.857 0.704 1e-160
359489711450 PREDICTED: uncharacterized protein LOC10 0.954 0.8 0.704 1e-160
356513299454 PREDICTED: uncharacterized protein LOC10 0.954 0.792 0.702 1e-158
225426012427 PREDICTED: uncharacterized protein LOC10 0.970 0.857 0.713 1e-157
356527674452 PREDICTED: uncharacterized protein LOC10 0.992 0.827 0.685 1e-157
147777966420 hypothetical protein VITISV_028215 [Viti 0.965 0.866 0.713 1e-156
224127878442 predicted protein [Populus trichocarpa] 0.992 0.846 0.674 1e-155
>gi|224072162|ref|XP_002303634.1| predicted protein [Populus trichocarpa] gi|222841066|gb|EEE78613.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 276/365 (75%), Positives = 308/365 (84%), Gaps = 6/365 (1%)

Query: 13  EDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMGNGRPDSGYLY 72
           E  +E PQK       KCDLFTGDW+PN  GP+YTN+SC LIE HQNCM NGR DSGYL+
Sbjct: 104 EPDDETPQKG------KCDLFTGDWIPNPSGPMYTNSSCSLIEGHQNCMRNGRTDSGYLF 157

Query: 73  WRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEE 132
           WRW P +C+LPPFNA+ FL +MRNK WALIGDSISRNHVQSLLC+LSTVEQAVEVYHDEE
Sbjct: 158 WRWNPRDCQLPPFNAQRFLEVMRNKRWALIGDSISRNHVQSLLCILSTVEQAVEVYHDEE 217

Query: 133 YRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDY 192
           Y+SKRWHFPSYNF++S IWSPFL KAAIFED +GVSTSEVQL LDKLD  WT  Y  LDY
Sbjct: 218 YKSKRWHFPSYNFTISNIWSPFLVKAAIFEDNDGVSTSEVQLQLDKLDTNWTNLYQGLDY 277

Query: 193 MIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGL 252
           MIISTGKWFLK++IY+ENDTVVGCH CP +N TE GF FAY K L   M+FIA SKHKGL
Sbjct: 278 MIISTGKWFLKAAIYHENDTVVGCHICPGKNFTEKGFVFAYEKALRYAMNFIATSKHKGL 337

Query: 253 VFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQN 312
           +FFRTSTPDHFENGEWHNGG+C K  P KEG+IELKDLN+ILR +EL EFEKA  +A++N
Sbjct: 338 IFFRTSTPDHFENGEWHNGGNCTKTTPAKEGEIELKDLNKILRTVELAEFEKASAKAAEN 397

Query: 313 GVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIME 372
           GV LKLLDFTNLLL RPDGHPG YR+F PFA+DK+AKVQNDCLHWCLPGPID WND+IME
Sbjct: 398 GVNLKLLDFTNLLLSRPDGHPGPYRQFHPFAQDKNAKVQNDCLHWCLPGPIDYWNDVIME 457

Query: 373 TVVNG 377
             +NG
Sbjct: 458 MAING 462




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058361|ref|XP_002299487.1| predicted protein [Populus trichocarpa] gi|222846745|gb|EEE84292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537733|ref|XP_002509933.1| conserved hypothetical protein [Ricinus communis] gi|223549832|gb|EEF51320.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297745405|emb|CBI40485.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489711|ref|XP_002276755.2| PREDICTED: uncharacterized protein LOC100263682 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513299|ref|XP_003525351.1| PREDICTED: uncharacterized protein LOC100816814 [Glycine max] Back     alignment and taxonomy information
>gi|225426012|ref|XP_002273303.1| PREDICTED: uncharacterized protein LOC100265666 [Vitis vinifera] gi|297742310|emb|CBI34459.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527674|ref|XP_003532433.1| PREDICTED: uncharacterized protein LOC100778581 [Glycine max] Back     alignment and taxonomy information
>gi|147777966|emb|CAN70903.1| hypothetical protein VITISV_028215 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127878|ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|222860959|gb|EEE98501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.968 0.844 0.615 1.2e-131
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.968 0.848 0.604 6.6e-129
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.917 0.758 0.576 5.6e-116
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.933 0.796 0.546 1.3e-114
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.885 0.634 0.435 8.5e-81
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.944 0.855 0.401 3.9e-76
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.896 0.793 0.399 3.9e-76
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.933 0.850 0.381 6.7e-72
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.904 0.680 0.375 6.7e-65
TAIR|locus:2138043533 TBL18 "AT4G25360" [Arabidopsis 0.952 0.673 0.355 3.3e-63
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 229/372 (61%), Positives = 289/372 (77%)

Query:     8 VVSEAEDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLI-ESHQNCMGNGRP 66
             ++S+ EDQ  +P    +I  EKCDLFTG W+ +  GP+YTN SC ++ ++HQNC+ NGRP
Sbjct:    62 ILSDNEDQ--IPV---DIEVEKCDLFTGKWIKDPLGPIYTNESCGIVVDAHQNCITNGRP 116

Query:    67 DSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVE 126
             DSG+L W+W+P +C LP F++  FL LMRNK+WA+IGDSI+RNHV+SLLCMLSTVE+ VE
Sbjct:   117 DSGFLNWKWKPNDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHVESLLCMLSTVEKPVE 176

Query:   127 VYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQ 186
             VYHDE YRSKRWHFPSYNF+VS IWSPFL +A IFED NGVS++ VQLHLDKLD  WT+ 
Sbjct:   177 VYHDENYRSKRWHFPSYNFTVSNIWSPFLVQADIFEDSNGVSSAAVQLHLDKLDNTWTDL 236

Query:   187 YLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKR-NLTELGFDFAYRKTLSSVMDFIA 245
             + +LDY IIS+G+WFLK+++Y+EN   VGCH CP+  N+T+LGFD+AY  +L  VMDFIA
Sbjct:   237 FPSLDYAIISSGEWFLKTAVYHENANPVGCHGCPESSNMTDLGFDYAYNTSLRHVMDFIA 296

Query:   246 ASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKA 305
              SK KG++FFRTS PDHFE+GEWHNGG+C+K  PV E  +E+K LN+ILR++E+ +FE+ 
Sbjct:   297 KSKTKGMIFFRTSIPDHFEDGEWHNGGTCKKTEPVGEEAVEMKVLNKILRDVEINQFERV 356

Query:   306 VPRASQNGVKXXXXXXXXXXXXRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDT 365
             V    Q                RPDGHPG YREF+PF KDK+A VQNDCLHWCLPGPID 
Sbjct:   357 VTEMGQESENLKLLDFAGMLLTRPDGHPGPYREFRPFDKDKNATVQNDCLHWCLPGPIDH 416

Query:   366 WNDLIMETVVNG 377
              ND+I+E +VNG
Sbjct:   417 LNDVILEIIVNG 428




GO:0008150 "biological_process" evidence=ND
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138043 TBL18 "AT4G25360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 6e-97
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 2e-40
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 1e-25
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  289 bits (741), Expect = 6e-97
 Identities = 108/294 (36%), Positives = 153/294 (52%), Gaps = 27/294 (9%)

Query: 82  LPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFP 141
           LP F+A+ FL  +R K    +GDS+SRN  +SL+C+LS VE       + + R  R+ F 
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60

Query: 142 SYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWF 201
            YN ++   WSPFL ++      +     +  L LD +D+KW++ +   D ++ ++G W+
Sbjct: 61  DYNVTIEFYWSPFLVES------DNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWW 114

Query: 202 LKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAA--SKHKGLVFFRTST 259
           L   +Y       G  YC K N  E+GF  AYRK L +   ++       K  VFFRT +
Sbjct: 115 LHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168

Query: 260 PDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLL 319
           P HFE GEW+ GGSC +  P+     E K L   + +I  E   +A          +KLL
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLLG--SEYKGLTPEMIDIVNEVLSRA-----AMKTPVKLL 221

Query: 320 DFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMET 373
           D T L   R DGHP  YR+  P  K+       DCLHWCLPG  DTWN+L++  
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKE------QDCLHWCLPGVPDTWNELLLAL 269


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.93
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 98.06
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=9.8e-112  Score=833.25  Aligned_cols=329  Identities=30%  Similarity=0.590  Sum_probs=285.1

Q ss_pred             CCCCCCCCCccCceeeCCCCCCcCCCCCC-CcccccCccCCCCCCCCCceeeecCCCCCCCCCCHHHHHHHHcCCeeEEe
Q 017120           24 EIGAEKCDLFTGDWVPNLKGPVYTNASCP-LIESHQNCMGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALI  102 (377)
Q Consensus        24 ~~~~~~Cd~~~G~WV~d~~~p~Y~~~~Cp-~i~~~~~C~~nGRpD~~yl~WrWqP~~C~L~~fd~~~fl~~lrgk~i~fV  102 (377)
                      .++.+.||+|+|+||+|+++|+|++.+|| ||++++||++|||||++|++|||||++|+||||||.+||++|||||||||
T Consensus        47 ~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FV  126 (387)
T PLN02629         47 QANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFV  126 (387)
T ss_pred             CCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEe
Confidence            36688899999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             ehhhhHHHHHHHHHhhcccccceeeeeccccceeeEEeccCceEEEEEeccccccccccccCCCCccceEEEEecccchh
Q 017120          103 GDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKK  182 (377)
Q Consensus       103 GDSl~Rn~~~SL~clL~~~~~~~~~~~~~~~~~~~~~f~~~n~tv~f~wspfLv~~~~~~~~~~~~~~~~~l~lD~~~~~  182 (377)
                      ||||+|||||||+|||+++++...+....+.+.++|+|++||+||+||||||||+.+..   .    +...|+||+++. 
T Consensus       127 GDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~---~----~~~~l~LD~id~-  198 (387)
T PLN02629        127 GDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAV---Q----GKRVLKLEEISG-  198 (387)
T ss_pred             ccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecC---C----CceeEEecCcch-
Confidence            99999999999999999977655444455567889999999999999999999997632   1    234699999875 


Q ss_pred             HHhhcCCccEEEEecceecccccccccCCeEeccccC--CCCcccccchHHHHHHHHHHHHHHHH--hcCCCcEEEEeeC
Q 017120          183 WTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYC--PKRNLTELGFDFAYRKTLSSVMDFIA--ASKHKGLVFFRTS  258 (377)
Q Consensus       183 ~~~~~~~~DvlV~ntG~Ww~~~~~~~~~g~~~g~~~~--~~~~~~~~~~~~Ayr~al~t~~~~v~--~~~~~~~vffRt~  258 (377)
                      +++.|+++|||||||||||.+++      .+.||.++  ...++++|++..||++||+||++||+  +++.+|+|||||+
T Consensus       199 ~a~~w~~~DvlVfntghWw~~~~------~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~  272 (387)
T PLN02629        199 NANAWRDADVLIFNTGHWWSHQG------SLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSI  272 (387)
T ss_pred             hhhhhccCCEEEEeCccccCCCC------eeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEec
Confidence            58899999999999999999864      34566554  34467899999999999999999997  6788999999999


Q ss_pred             CCCCCCCCCCCCCC-----CC-CcccccCCCCcccchhhHHHhhhhHHHHHHHhhhhccCCceeEEEecccccccCCCCC
Q 017120          259 TPDHFENGEWHNGG-----SC-QKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGH  332 (377)
Q Consensus       259 sP~Hf~~g~W~~gg-----~C-~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLDIt~ls~~R~DaH  332 (377)
                      ||+||+||+||+||     +| ++|+|+.+.++ .+....+|+        +++++.+.++.+|++||||+||++|||||
T Consensus       273 SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--------~ve~v~~~~~~~v~lLDIT~ls~lR~DgH  343 (387)
T PLN02629        273 SPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--------VVDEVIRGMHNPAYLLDITLLSELRKDGH  343 (387)
T ss_pred             CcccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--------HHHHHHHhcCCceEEEechhhhhcCCCCC
Confidence            99999999999865     68 79999985543 344444443        23344445678999999999999999999


Q ss_pred             CCCcccCCCcccCCCCCCCCCcccccCCChhhHHHHHHHHHHh
Q 017120          333 PGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVV  375 (377)
Q Consensus       333 ps~y~~~~~~~~~~~~~~~~DC~HWCLPGv~DtWNelL~~~L~  375 (377)
                      ||+|++..+.++++++..++||+||||||||||||||||++|+
T Consensus       344 Ps~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        344 PSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             cccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            9999866556666777888999999999999999999999996



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 70/438 (15%), Positives = 128/438 (29%), Gaps = 139/438 (31%)

Query: 3   ELVFSVVSEAEDQNEMPQKEPEIGAEKCDLFTGDWVPNLKGPVYTNASCPLIESHQNCMG 62
           ++  S++S+ E  + +  K+   G  +  LF   W    K            E  Q  + 
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLR--LF---WTLLSKQE----------EMVQKFVE 84

Query: 63  NG-RPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTW----ALIGDSISR--------N 109
              R +  +L    + E    P      ++   R++ +         ++SR         
Sbjct: 85  EVLRINYKFLMSPIKTE-QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 110 HVQSL-------LC-ML----STVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAK 157
            +  L       +  +L    + V  A++V    + + K            + W      
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCK--------MDFKIFWLNL--- 189

Query: 158 AAIFEDYNGVSTSEVQLHLDKL----DKKWT---EQYLNLDYMIISTGKW---FLKSSIY 207
                  N  S   V   L KL    D  WT   +   N+   I S        LKS  Y
Sbjct: 190 ------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 208 YEN----DTVVGCHYCPKRNLTEL-GFDFAYRKTL-----SSVMDFIAAS--KHKGLVFF 255
                    V        +N      F+ +  K L       V DF++A+   H  L   
Sbjct: 244 ENCLLVLLNV--------QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 256 RTS-TPDHFEN--GEWHNGGSCQ-------KMMPVKEGDI--ELKD-LNRI--LRNIELE 300
             + TPD  ++   ++ +    Q          P +   I   ++D L      +++  +
Sbjct: 295 SMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 301 EFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLP 360
           +    +         L +L+        P  +   +     F     A +          
Sbjct: 354 KLTTII------ESSLNVLE--------PAEYRKMFDRLSVF--PPSAHI---------- 387

Query: 361 GPIDT----WNDLIMETV 374
            P       W D+I   V
Sbjct: 388 -PTILLSLIWFDVIKSDV 404


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 93.08
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=93.08  E-value=0.37  Score=41.56  Aligned_cols=52  Identities=15%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             CCccEEEEecceecccccccccCCeEeccccCCCCcccccchHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCCCCC
Q 017120          188 LNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHF  263 (377)
Q Consensus       188 ~~~DvlV~ntG~Ww~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~Ayr~al~t~~~~v~~~~~~~~vffRt~sP~Hf  263 (377)
                      ..+|+|||+.|..=.                    ..    ..+.|+..|+++++.+....++++++|-+..|...
T Consensus        73 ~~pd~Vvi~~G~ND~--------------------~~----~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~  124 (200)
T 4h08_A           73 TKFDVIHFNNGLHGF--------------------DY----TEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRT  124 (200)
T ss_dssp             SCCSEEEECCCSSCT--------------------TS----CHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEE
T ss_pred             CCCCeEEEEeeeCCC--------------------CC----CHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcc
Confidence            578999999885310                    00    13467777888777776456778999999888653




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 82.88
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein BT2961
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=82.88  E-value=0.19  Score=40.88  Aligned_cols=14  Identities=43%  Similarity=0.615  Sum_probs=12.6

Q ss_pred             cCCeeEEeehhhhH
Q 017120           95 RNKTWALIGDSISR  108 (377)
Q Consensus        95 rgk~i~fVGDSl~R  108 (377)
                      .||+|+|+|||++-
T Consensus         7 ~~kkI~~~GDS~T~   20 (248)
T d3bzwa1           7 QGKKVGYIGDSITD   20 (248)
T ss_dssp             TTCEEEEEESTTTC
T ss_pred             CCCEEEEEehHHcc
Confidence            58999999999984