Citrus Sinensis ID: 017124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Secondary Structure (PSIPRED)
cccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccHHHHHccccEEEcccccccccccHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEcccccEEEEEccccccccccEEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEcccHHHHHHHHccccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccEEEEcccccccccccccHHcccccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
Coil and Loop (DISEMBL)
madaediqplvcdngtgmvkagfagddapravfpsivgrprhtgvmvgmgqkdayvgdeaqskrgiltlkypiehgivsnwddmEKIWHHTFYNelrvapeehpvllteaplnpkanrEKMTQIMFETFNVPAMYVAIQAVLSLYASGrttgivldsgdgvshtvpiyegyalpHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAveksyelpdgqvitigaerfrcpevlfqpsligmeaagihettynsimkcdvdirKDLYGNivlsggstmfpgiaDRMSREITalapssmkikvvapperkysVWIGGSILASLSTFQQMWIskgeydesgpaivhrkcf
Flexible Loop (DISEMBL)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILtergysftttaerEIVRDMKEKLAYVALDYEQELEAAKsssaveksyeLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITAlapssmkikvvapPERKYSVWIGGSILASLSTFQQMWISKgeydesgpaivhrkcf
Low Complexity Region (SEG)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQeleaaksssaveksyeLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Disordered region (IsUnstruct)
*********LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA*********KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQ**************YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY*************
Disordered Region (DISOPRED)
****EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV***MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYE***************YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Disordered Region (DISEMBL)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQEL***********SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Disordered Region (DISPRO)
******IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
P30173	377	Actin-101 OS=Solanum tube	N/A	no	1.0	1.0	0.970	0.0
P53492	377	Actin-7 OS=Arabidopsis th	yes	no	1.0	1.0	0.970	0.0
A3C6D7	377	Actin-2 OS=Oryza sativa s	yes	no	1.0	1.0	0.965	0.0
P0C539	377	Actin-2 OS=Oryza sativa s	N/A	no	1.0	1.0	0.965	0.0
Q10DV7	377	Actin-1 OS=Oryza sativa s	yes	no	1.0	1.0	0.960	0.0
A2XLF2	377	Actin-1 OS=Oryza sativa s	N/A	no	1.0	1.0	0.960	0.0
Q10AZ4	377	Actin-3 OS=Oryza sativa s	yes	no	1.0	1.0	0.962	0.0
A2XNS1	377	Actin-3 OS=Oryza sativa s	N/A	no	1.0	1.0	0.962	0.0
O81221	377	Actin OS=Gossypium hirsut	N/A	no	1.0	1.0	0.957	0.0
P30171	377	Actin-97 OS=Solanum tuber	N/A	no	1.0	1.0	0.954	0.0

>sp|P30173|ACT13_SOLTU Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/377 (97%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDI+PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIEPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV+P+EHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPDEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTT+AEREIVRDMKEKLAYVALDYEQELE AKSSSAVEK
Sbjct: 181 DLAGRDLTDCLMKILTERGYSFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIT 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.
Solanum tuberosum (taxid: 4113)

>sp|P53492|ACT7_ARATH Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/377 (97%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KSEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation.

Arabidopsis thaliana (taxid: 3702)

>sp|A3C6D7|ACT2_ORYSJ Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/377 (96%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGYSFTT+AEREIVRD+KEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           + EY+ESGPAIVHRKCF
Sbjct: 361 RAEYEESGPAIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C539|ACT2_ORYSI Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/377 (96%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGYSFTT+AEREIVRD+KEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEV+FQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           + EY+ESGPAIVHRKCF
Sbjct: 361 RAEYEESGPAIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10DV7|ACT1_ORYSJ Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/377 (96%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+Y+ALDY+QE+E AK+SS+VEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XLF2|ACT1_ORYSI Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/377 (96%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+Y+ALDY+QE+E AK+SS+VEK
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYDQEMETAKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10AZ4|ACT3_ORYSJ Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/377 (96%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKLAY+ALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDCLMKILTERGYSFTTTAEREIVRDIKEKLAYIALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XNS1|ACT3_ORYSI Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/377 (96%), Positives = 372/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKLAY+ALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDCLMKILTERGYSFTTTAEREIVRDIKEKLAYIALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Oryza sativa subsp. indica (taxid: 39946)

>sp|O81221|ACT_GOSHI Actin OS=Gossypium hirsutum PE=3 SV=1

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/377 (95%), Positives = 373/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKLAY+ALDYEQELE +K+SS++EK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|P30171|ACT11_SOLTU Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/377 (95%), Positives = 373/377 (98%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH+GVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHSGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGYSFTT+AEREIVRD+KEKLAY+ALDYEQELE +K+SS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
225448323	377	PREDICTED: actin-101 [Vitis vinifera]	1.0	1.0	0.994	0.0
281485191	377	actin [Persea americana]	1.0	1.0	0.986	0.0
224055984	377	actin 1 [Populus trichocarpa] gi|2555623	1.0	1.0	0.984	0.0
294718134	377	actin 2 [Pyrus x bretschneideri] gi|2947	1.0	1.0	0.984	0.0
380469910	377	actin 2 [Annona cherimola]	1.0	1.0	0.981	0.0
399525600	377	actin [Lycoris longituba]	1.0	1.0	0.981	0.0
449459238	377	PREDICTED: actin-7-like [Cucumis sativus	1.0	1.0	0.981	0.0
296088608	408	unnamed protein product [Vitis vinifera]	1.0	0.924	0.981	0.0
32186906	377	actin [Gossypium hirsutum] gi|219563046|	1.0	1.0	0.981	0.0
224116600	377	actin 9 [Populus trichocarpa] gi|1184812	1.0	1.0	0.981	0.0

>gi|225448323|ref|XP_002265476.1| PREDICTED: actin-101 [Vitis vinifera]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/377 (99%), Positives = 376/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE AKSSSAVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGPAIVHRKCF
Sbjct: 361 KGEYDESGPAIVHRKCF 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281485191|gb|ADA70361.1| actin [Persea americana]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS +EK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSTIEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Persea americana

Species: Persea americana

Genus: Persea

Family: Lauraceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055984|ref|XP_002298710.1| actin 1 [Populus trichocarpa] gi|255562375|ref|XP_002522194.1| actin, putative [Ricinus communis] gi|255568080|ref|XP_002525016.1| actin, putative [Ricinus communis] gi|222845968|gb|EEE83515.1| actin 1 [Populus trichocarpa] gi|223535678|gb|EEF37343.1| actin, putative [Ricinus communis] gi|223538565|gb|EEF40169.1| actin, putative [Ricinus communis] gi|315248859|gb|ADT91622.1| actin7a [Hevea brasiliensis] gi|325053295|dbj|BAJ79029.1| actin [Nitraria sibirica] gi|333463955|gb|AEF33711.1| actin [Hevea brasiliensis] gi|358635038|dbj|BAL22349.1| actin [Nitraria sibirica] gi|388252793|gb|AFK24460.1| actin 2 [Ziziphus jujuba] gi|390988087|gb|AFM36693.1| actin 1 [Ficus microcarpa] gi|452029751|gb|AGF91932.1| actin [Euphorbia lathyris]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294718134|gb|ADF31905.1| actin 2 [Pyrus x bretschneideri] gi|294718136|gb|ADF31906.1| actin 2 [Pyrus x bretschneideri]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380469910|gb|AFD62269.1| actin 2 [Annona cherimola]

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDESGP+IVHRKCF
Sbjct: 361 KAEYDESGPSIVHRKCF 377

Source: Annona cherimola

Species: Annona cherimola

Genus: Annona

Family: Annonaceae

Order: Magnoliales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399525600|gb|AFP44112.1| actin [Lycoris longituba]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDCLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           SYELPDGQVITIGAERFRCPEVLFQPSLIGME+AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMESAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Lycoris longituba

Species: Lycoris longituba

Genus: Lycoris

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459238|ref|XP_004147353.1| PREDICTED: actin-7-like [Cucumis sativus] gi|449461823|ref|XP_004148641.1| PREDICTED: actin-7-like [Cucumis sativus] gi|449532903|ref|XP_004173417.1| PREDICTED: actin-7-like [Cucumis sativus]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS++EK
Sbjct: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088608|emb|CBI37599.3| unnamed protein product [Vitis vinifera]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 374/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 32  MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 91

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 92  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 151

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 152 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 211

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 212 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 271

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 272 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 331

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 332 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 391

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 392 KGEYDESGPSIVHRKCF 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32186906|gb|AAP73457.1| actin [Gossypium hirsutum] gi|219563046|gb|ACL27885.1| actin [Helianthus annuus] gi|219563048|gb|ACL27886.1| actin [Helianthus annuus] gi|306922316|dbj|BAJ17659.1| actin [Gynura bicolor]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTD+LMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116600|ref|XP_002331880.1| actin 9 [Populus trichocarpa] gi|118481204|gb|ABK92553.1| unknown [Populus trichocarpa] gi|118482913|gb|ABK93370.1| unknown [Populus trichocarpa] gi|133925835|gb|ABO43670.1| actin [Populus trichocarpa] gi|222874629|gb|EEF11760.1| actin 9 [Populus trichocarpa] gi|429326374|gb|AFZ78527.1| actin [Populus tomentosa]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/377 (98%), Positives = 375/377 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD+EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           DLAGRDLTDALMKILTERGY FTTTAEREIVRDMKEKLAYVALDYEQELE AKSSS+VEK
Sbjct: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           +YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query: 361 KGEYDESGPAIVHRKCF 377
           KGEYDESGP+IVHRKCF
Sbjct: 361 KGEYDESGPSIVHRKCF 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2178128	377	ACT7 "actin 7" [Arabidopsis th	1.0	1.0	0.936	2e-189
TAIR|locus:2099302	377	ACT11 "AT3G12110" [Arabidopsis	1.0	1.0	0.923	3.8e-188
TAIR|locus:2040656	377	ACT1 "AT2G37620" [Arabidopsis	1.0	1.0	0.915	2.7e-187
TAIR|locus:2084410	377	ACT3 "AT3G53750" [Arabidopsis	1.0	1.0	0.915	2.7e-187
TAIR|locus:2075160	377	ACT12 "AT3G46520" [Arabidopsis	1.0	1.0	0.915	3.9e-186
TAIR|locus:2148298	377	ACT4 "actin 4" [Arabidopsis th	1.0	1.0	0.912	1e-185
TAIR|locus:2028416	377	ACT8 "AT1G49240" [Arabidopsis	1.0	1.0	0.893	2.9e-183
TAIR|locus:2093954	377	ACT2 "AT3G18780" [Arabidopsis	1.0	1.0	0.891	7.6e-183
DICTYBASE|DDB_G0289663	376	act5 "actin" [Dictyostelium di	0.994	0.997	0.877	3.4e-180
DICTYBASE|DDB_G0289553	376	act1 "actin" [Dictyostelium di	0.994	0.997	0.877	3.4e-180

TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1836 (651.4 bits), Expect = 2.0e-189, P = 2.0e-189
 Identities = 353/377 (93%), Positives = 357/377 (94%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD+LMKILTERGY FTTTAEREIVRD+KEKLAYVALDYEQ             
Sbjct:   181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGGSTMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct:   301 LSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KSEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0051301 "cell division" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)]

 Score = 1824 (647.1 bits), Expect = 3.8e-188, P = 3.8e-188
 Identities = 348/377 (92%), Positives = 356/377 (94%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD LMKILTERGYSFTT+AEREIVRD+KEKLAY+ALDYEQ             
Sbjct:   181 DLAGRDLTDYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIG ERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SYELPDGQVITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005856 "cytoskeleton" evidence=ISS

TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
 Identities = 345/377 (91%), Positives = 356/377 (94%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL Y+ALDYEQ             
Sbjct:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIG+ERFRCPEVL+QPS+IGME AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0048589 "developmental growth" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
 Identities = 345/377 (91%), Positives = 356/377 (94%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTDALMKILTERGYSFTTTAEREIVRD+KEKL Y+ALDYEQ             
Sbjct:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIG+ERFRCPEVL+QPS+IGME AGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMFPGIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1805 (640.5 bits), Expect = 3.9e-186, P = 3.9e-186
 Identities = 345/377 (91%), Positives = 353/377 (93%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+Y+ALDYEQ             
Sbjct:   181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMF GI DRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=RCA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 344/377 (91%), Positives = 353/377 (93%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD LMKILTERGYSFTTTAEREIVRDMKEKL+Y+ALD+EQ             
Sbjct:   181 DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIGAERFRCPEVLFQPS+IGME  GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 SFELPDGQVITIGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMF GI DRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct:   301 LSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIA 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDESGP+IVHRKCF
Sbjct:   361 KAEYDESGPSIVHRKCF 377

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

TAIR|locus:2028416 ACT8 "AT1G49240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1778 (630.9 bits), Expect = 2.9e-183, P = 2.9e-183
 Identities = 337/377 (89%), Positives = 352/377 (93%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MADA+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEA
Sbjct:     1 MADADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG++LPHAILRL
Sbjct:   121 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL++VA+DYEQ             
Sbjct:   181 DLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIGAERFRCPEVLFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMF GIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct:   301 LSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDE+GP IVHRKCF
Sbjct:   361 KAEYDEAGPGIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048768 "root hair cell tip growth" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2093954 ACT2 "AT3G18780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
 Identities = 336/377 (89%), Positives = 352/377 (93%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MA+A+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEA
Sbjct:     1 MAEADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG++LPHAILRL
Sbjct:   121 MTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
             DLAGRDLTD LMKILTERGY FTTTAEREIVRD+KEKL++VA+DYEQ             
Sbjct:   181 DLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEK 240

Query:   241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
                LPDGQVITIGAERFRCPEVLFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
             LSGG+TMF GIADRMS+EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS
Sbjct:   301 LSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360

Query:   361 KGEYDESGPAIVHRKCF 377
             K EYDE+GP IVHRKCF
Sbjct:   361 KAEYDEAGPGIVHRKCF 377

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048768 "root hair cell tip growth" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010193 "response to ozone" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016051 "carbohydrate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 329/375 (87%), Positives = 348/375 (92%)

Query:     3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
             D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct:     2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61

Query:    63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
             KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct:    62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121

Query:   123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
             QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct:   122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 181

Query:   183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
             AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct:   182 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241

Query:   243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
              LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct:   242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 301

Query:   303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
             GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct:   302 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 361

Query:   363 EYDESGPAIVHRKCF 377
             EYDESGP+IVHRKCF
Sbjct:   362 EYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0289553 act1 "actin" [Dictyostelium discoideum (taxid:44689)]

 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 329/375 (87%), Positives = 348/375 (92%)

Query:     3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
             D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct:     2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61

Query:    63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
             KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct:    62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121

Query:   123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
             QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct:   122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 181

Query:   183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
             AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct:   182 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 241

Query:   243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
              LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct:   242 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 301

Query:   303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
             GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct:   302 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 361

Query:   363 EYDESGPAIVHRKCF 377
             EYDESGP+IVHRKCF
Sbjct:   362 EYDESGPSIVHRKCF 376

GO:0006909 "phagocytosis" evidence=IEP

GO:0001891 "phagocytic cup" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0032009 "early phagosome" evidence=IDA

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006897 "endocytosis" evidence=TAS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0042331 "phototaxis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0006935 "chemotaxis" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=TAS

GO:0031143 "pseudopodium" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0017022 "myosin binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P02582	ACT1_MAIZE	No assigned EC number	0.9018	0.9946	1.0	N/A	no
P84183	ACT4_BOMMO	No assigned EC number	0.9008	0.9893	0.9920	N/A	no
P02580	ACT3_SOYBN	No assigned EC number	0.9310	0.9973	1.0	yes	no
P0CJ47	ACT3_ARATH	No assigned EC number	0.9469	1.0	1.0	yes	no
P0CJ46	ACT1_ARATH	No assigned EC number	0.9469	1.0	1.0	yes	no
P17126	ACT_HYDVU	No assigned EC number	0.8965	0.9973	1.0	N/A	no
A3C6D7	ACT2_ORYSJ	No assigned EC number	0.9655	1.0	1.0	yes	no
P07829	ACT3_DICDI	No assigned EC number	0.8906	0.9946	0.9973	yes	no
Q964E1	ACTC_BIOOB	No assigned EC number	0.9034	0.9893	0.9920	N/A	no
Q964E0	ACTC_BIOTE	No assigned EC number	0.8981	0.9893	0.9920	N/A	no
P30168	ACT6_SOLTU	No assigned EC number	0.9310	1.0	1.0	N/A	no
O81221	ACT_GOSHI	No assigned EC number	0.9575	1.0	1.0	N/A	no
P30167	ACT3_SOLTU	No assigned EC number	0.9496	1.0	1.0	N/A	no
P30164	ACT1_PEA	No assigned EC number	0.9575	0.9973	1.0	N/A	no
P30165	ACT2_PEA	No assigned EC number	0.9522	0.9973	1.0	N/A	no
P46258	ACT3_PEA	No assigned EC number	0.9496	1.0	1.0	N/A	no
P53496	ACT11_ARATH	No assigned EC number	0.9522	1.0	1.0	yes	no
P02578	ACT1_ACACA	No assigned EC number	0.9010	0.9920	0.9973	N/A	no
P23343	ACT1_DAUCA	No assigned EC number	0.9312	0.9973	0.9894	N/A	no
P84185	ACT5C_ANOGA	No assigned EC number	0.9008	0.9893	0.9920	yes	no
P12716	ACTC_PISOC	No assigned EC number	0.9008	0.9893	0.9920	N/A	no
P0C539	ACT2_ORYSI	No assigned EC number	0.9655	1.0	1.0	N/A	no
P53504	ACT1_SORBI	No assigned EC number	0.9442	1.0	1.0	N/A	no
P02572	ACT2_DROME	No assigned EC number	0.9034	0.9893	0.9920	yes	no
Q10DV7	ACT1_ORYSJ	No assigned EC number	0.9602	1.0	1.0	yes	no
O65316	ACT_MESVI	No assigned EC number	0.9098	1.0	1.0	N/A	no
P30172	ACT12_SOLTU	No assigned EC number	0.9719	0.9469	1.0	N/A	no
Q553U6	ACT22_DICDI	No assigned EC number	0.9013	0.9946	0.9973	yes	no
Q96293	ACT8_ARATH	No assigned EC number	0.9177	1.0	1.0	no	no
Q96292	ACT2_ARATH	No assigned EC number	0.9151	1.0	1.0	no	no
Q964E3	ACTC_BIOAL	No assigned EC number	0.8954	0.9893	0.9920	N/A	no
O65315	ACT_COLSC	No assigned EC number	0.9177	1.0	1.0	N/A	no
P20904	ACT_VOLCA	No assigned EC number	0.8965	1.0	1.0	N/A	no
P53471	ACT2_SCHMA	No assigned EC number	0.8965	0.9973	1.0	N/A	no
P53470	ACT1_SCHMA	No assigned EC number	0.9061	0.9893	0.9920	N/A	no
P53498	ACT_CHLRE	No assigned EC number	0.8992	1.0	1.0	N/A	no
P53494	ACT4_ARATH	No assigned EC number	0.9416	1.0	1.0	no	no
P53497	ACT12_ARATH	No assigned EC number	0.9442	1.0	1.0	yes	no
Q05214	ACT1_TOBAC	No assigned EC number	0.9522	1.0	1.0	N/A	no
P30171	ACT11_SOLTU	No assigned EC number	0.9549	1.0	1.0	N/A	no
P30173	ACT13_SOLTU	No assigned EC number	0.9708	1.0	1.0	N/A	no
P53492	ACT7_ARATH	No assigned EC number	0.9708	1.0	1.0	yes	no
Q54GX7	ACT10_DICDI	No assigned EC number	0.904	0.9946	0.9973	yes	no
Q10AZ4	ACT3_ORYSJ	No assigned EC number	0.9628	1.0	1.0	yes	no
A2XNS1	ACT3_ORYSI	No assigned EC number	0.9628	1.0	1.0	N/A	no
P0C542	ACT7_ORYSI	No assigned EC number	0.9383	0.9893	0.9920	N/A	no
P0C540	ACT7_ORYSJ	No assigned EC number	0.9383	0.9893	0.9920	yes	no
A2XLF2	ACT1_ORYSI	No assigned EC number	0.9602	1.0	1.0	N/A	no
P07830	ACT1_DICDI	No assigned EC number	0.9066	0.9946	0.9973	yes	no
P02576	ACTA_PHYPO	No assigned EC number	0.9093	0.9946	0.9973	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	0.0
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	0.0
pfam00022	367	pfam00022, Actin, Actin	0.0
smart00268	373	smart00268, ACTIN, Actin	0.0
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	1e-173
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	1e-168
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	1e-158
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	1e-114
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	4e-17

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score =  727 bits (1877), Expect = 0.0
 Identities = 339/373 (90%), Positives = 361/373 (96%)

Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSKR
Sbjct: 4   EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR 63

Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123

Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183

Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL 244
           RDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E E++ A SSSA+EKSYEL
Sbjct: 184 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 243

Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 303

Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 304 TTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEY 363

Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 364 DESGPSIVHRKCF 376

Length = 376

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score =  673 bits (1738), Expect = 0.0
 Identities = 301/379 (79%), Positives = 341/379 (89%), Gaps = 3/379 (0%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M+  E+    V DNG+GMVKAGFAGDDAPR VFPSIVGRP++ G+MVGM +KD YVGDEA
Sbjct: 1   MSV-EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEA 59

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           Q KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 60  QDKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFET NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY+LPHAI RL
Sbjct: 120 MTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRL 179

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQEL-EAAKSSSAVE 239
           D+AGRDLT+ +MKIL ERG +FTTTAE+EIVRD+KEKL Y+ALD+++E+  +A SS   E
Sbjct: 180 DVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239

Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGM-EAAGIHETTYNSIMKCDVDIRKDLYGN 298
           +SYELPDG +IT+G+ERFRCPE LFQPSLIG  E  GIHE T+ SI KCD+DIRKDLYGN
Sbjct: 240 ESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGN 299

Query: 299 IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMW 358
           IVLSGG+TM+ G+ +R+++E+T LAPS+MKIKVVAPPERKYSVWIGGSIL+SL TFQQMW
Sbjct: 300 IVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMW 359

Query: 359 ISKGEYDESGPAIVHRKCF 377
           ++K EYDESGP+IVHRKCF
Sbjct: 360 VTKEEYDESGPSIVHRKCF 378

Length = 378

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score =  646 bits (1669), Expect = 0.0
 Identities = 241/374 (64%), Positives = 285/374 (76%), Gaps = 8/374 (2%)

Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +++  LV DNG+G  KAGFAG+DAPRAV PS+VGRPR  GVMV       YVGDEA SKR
Sbjct: 1   DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMV-----KYYVGDEALSKR 55

Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
             L ++YPIE GIV NWD MEKIW HTF+ ELRV PEEHP+LLTE PLNP ANREK T+I
Sbjct: 56  PGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEI 115

Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETF VPA+Y+A QAVLS YASGRTTG+V+DSG GV+  VP+YEGY L  AI R DLAG
Sbjct: 116 MFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAG 175

Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL 244
            DLTD L K+L+ R YSF T AE E+VRD+KE L YV+ D     + A SSS    SYEL
Sbjct: 176 DDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFG--DTAASSSPPTVSYEL 233

Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDG VI +G ERFR PE+LF PSLIG E+AGI E  Y+SI  CDVD+R  L  NIV++GG
Sbjct: 234 PDGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGG 293

Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGE 363
           +T+FPG  +R+ +E+  LAPS +K+K++APP ERKYS WIGGSILASL TFQQMW+SK E
Sbjct: 294 TTLFPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQE 353

Query: 364 YDESGPAIVHRKCF 377
           Y+E G ++V RKCF
Sbjct: 354 YEEHGSSVVERKCF 367

Length = 367

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score =  630 bits (1627), Expect = 0.0
 Identities = 251/373 (67%), Positives = 306/373 (82%), Gaps = 4/373 (1%)

Query: 8   QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL 67
             +V DNG+G +KAGFAG+D P+ VFPSIVGRP+    MVG   KD +VGDEAQ KRG L
Sbjct: 2   PAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVG-DAKDIFVGDEAQEKRGGL 60

Query: 68  TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
            LKYPIE+GIV NWDDMEKIW +TF+NELRV PEEHPVLLTE P+NPK+NREK+ +IMFE
Sbjct: 61  ELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFE 120

Query: 128 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187
           TFN PA+Y+AIQAVLSLYASGRTTG+V+DSGDGV+H VP+ +GY LPHAI R+D+AGRD+
Sbjct: 121 TFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDI 180

Query: 188 TDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS---SSAVEKSYEL 244
           TD L ++L+ERGY F ++AE EIVR++KEKL YVA D+E+E++ A+    SS +EK+YEL
Sbjct: 181 TDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESSESSKLEKTYEL 240

Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDG  I +G ERFR PE+LF P LIG+E  GIHE  Y SI KCD+D+RKDLY NIVLSGG
Sbjct: 241 PDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGG 300

Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           ST+ PG  +R+ +E+  LAP  +K+KV+APPERKYSVW+GGSILASLSTF+ MWI+K EY
Sbjct: 301 STLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360

Query: 365 DESGPAIVHRKCF 377
           +ESG  IV RKCF
Sbjct: 361 EESGSQIVERKCF 373

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score =  486 bits (1252), Expect = e-173
 Identities = 197/370 (53%), Positives = 270/370 (72%), Gaps = 2/370 (0%)

Query: 8   QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL 67
           QP++ DNGTG +KAGFAG+D P  VFPS VGRP++  VM G  + + +VG++A+  RG+L
Sbjct: 13  QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLL 72

Query: 68  TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 127
            + YPI HGI+ NW+DME IW H  YN +++  EEHPVLLTEAPLNP+ N+EK+ ++ FE
Sbjct: 73  KVTYPINHGIIENWNDMENIWIHV-YNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFE 131

Query: 128 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187
           TFNVPA++++IQA+LSLY+ G+T G VLD GDGV H V IYEGY++ + I R D+AGRD+
Sbjct: 132 TFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDI 191

Query: 188 TDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDG 247
           T  L  +L + G+ F T+AE E+V++MKE   YV+ +  +E + +   +     Y LPDG
Sbjct: 192 TTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKE-KNSSEKALTTLPYILPDG 250

Query: 248 QVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTM 307
             I IG+ER+R PEVLF PS++G+E  G+ E    SI + D+D+R+ LY +IVLSGG+TM
Sbjct: 251 SQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTM 310

Query: 308 FPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDES 367
           F G  DR+  EI   AP  + I++ APPERK+S +IGGSILASL+TF+++WISK E+DE 
Sbjct: 311 FHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEY 370

Query: 368 GPAIVHRKCF 377
           G  I+HRK F
Sbjct: 371 GSVILHRKTF 380

Length = 380

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score =  474 bits (1220), Expect = e-168
 Identities = 208/368 (56%), Positives = 284/368 (77%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           +V DNG+G  K G AGDDAP + FP+IVGR +    +     K+ YVG+EAQ+KRG+L +
Sbjct: 8   VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAI 67

Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           K PI++GI+++WDD+E IWHH FYNEL ++PE+ PV +T+AP+N K NRE+MTQIMFETF
Sbjct: 68  KEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETF 127

Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N P +Y++ +AVLSLY SG+T G+V+DSG+GV+H VP++EG+ +P AI +++LAGR  TD
Sbjct: 128 NTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTD 187

Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQV 249
            L +IL E GYS T   +R IV+++KE+L Y ALD + E    K S++ +  Y+LPDG +
Sbjct: 188 YLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNI 247

Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           +TI +++FRC E+LFQP LIG+E AGIH   Y+SI KCD+D+R++L  NIVLSGG+T+FP
Sbjct: 248 LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFP 307

Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIA+R+S E+T L PS +KI+V APP+R++S WIGGSI  +LST Q  WI + EYDE GP
Sbjct: 308 GIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGP 367

Query: 370 AIVHRKCF 377
           +IVHRKCF
Sbjct: 368 SIVHRKCF 375

Length = 375

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score =  452 bits (1165), Expect = e-158
 Identities = 209/443 (47%), Positives = 279/443 (62%), Gaps = 69/443 (15%)

Query: 4   AEDIQP-LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQ 61
             D  P +V DNG+G  KAGFAG+D P  VFPSIVGR R    VM    +KD YVG+EAQ
Sbjct: 2   TGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQ 61

Query: 62  SKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNE--LRVAPEEHPVLLTEAPLNPKAN 117
           + R    L L+YPIE+GI+ NWD ME+IW +TF+N+  L  +PEEHP+LLTE PLNP +N
Sbjct: 62  NDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSN 121

Query: 118 REKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--TGIVLDSGDGVSHTVPIYEGYALPH 175
           REK+T+++FET NVPA+Y+AIQAVLSLYASG +  TG+V+DSGD V+H +P+ +G  LP 
Sbjct: 122 REKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPK 181

Query: 176 AILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKL-------AY 220
           A+ R+D+ GRD+TD L K+L E     RGY+  +       EIV ++KE++       AY
Sbjct: 182 AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAY 241

Query: 221 VALDYEQELE----------------AAKSSSAVEKSYELPDGQVITIGAE-RFRCPEVL 263
           V+LD E+E E                 +K +S  ++S ELPDG+ I  G E RF+ PE+L
Sbjct: 242 VSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEIL 301

Query: 264 FQPSL-----------------------------IGMEAAGIHETTYNSIMKCDVDIRKD 294
           F+P L                             +G + AG+ E  Y SI  CD D+RK 
Sbjct: 302 FKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKS 361

Query: 295 LYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTF 354
           LY NIVL+GG++  PG A+R+ +E+T+LAPS  K+ V+ PP+     W+G SILASL TF
Sbjct: 362 LYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETF 421

Query: 355 QQMWISKGEYDESGPAIVHRKCF 377
           QQ+WI+K EY+E GP I+  K F
Sbjct: 422 QQLWITKEEYEEHGPDILQEKRF 444

Length = 444

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score =  339 bits (870), Expect = e-114
 Identities = 156/407 (38%), Positives = 219/407 (53%), Gaps = 48/407 (11%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMV---GMGQKDAYVGDEAQSKRGI 66
           +V DNGTG  K G+AG+  P  + P+++             G    D Y+GDEA +    
Sbjct: 7   VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS 66

Query: 67  LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 126
            TL YP++HGIV +WD MEK W    +  LR  PEEH  +LTE P+NP  NRE   +IMF
Sbjct: 67  YTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMF 126

Query: 127 ETFNVPAMYVAIQAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYEGYALPHA 176
           ETFNV  +Y+A+QAVL+L AS          G  TG V+DSGDGV+H +P+ +GY +  +
Sbjct: 127 ETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186

Query: 177 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS-- 234
           I  + LAGRD+T+ + ++L ERG          + + +KEK  YVA D  +E E   S  
Sbjct: 187 IKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDP 246

Query: 235 ----------SSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNS 283
                     +S  +K Y       + +G ERF  PE+ F P +   E    + E   ++
Sbjct: 247 KNHFKKYTAVNSVTKKPYT------VDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDA 300

Query: 284 IMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITA----------------LAPSSM 327
           I  C +D R+ LY NIVLSGGSTMF G   R+ R++                  L P  +
Sbjct: 301 IQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI 360

Query: 328 KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHR 374
            + VV+ P ++Y+VW GGS+LAS   F+++  +K EYDE GP+I   
Sbjct: 361 DVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407

Length = 414

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 44/192 (22%), Positives = 62/192 (32%), Gaps = 53/192 (27%)

Query: 10  LVCDNGTGMVKAGFAGDDA---PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI 66
           L  D G+   KAG A  D    P  + P+ VGRP                          
Sbjct: 1   LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRP-------------------------- 34

Query: 67  LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQI- 124
                    G V++ D++E+         LR    E   V +TE    PK NRE +    
Sbjct: 35  ---------GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPN 85

Query: 125 --------MFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGY 171
                     E      + V   AV +  A G       T +V+D G G +    + +G 
Sbjct: 86  LLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGK 145

Query: 172 ALPHAILRLDLA 183
               A   L +A
Sbjct: 146 GGVGAAGELGIA 157

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
PTZ00452	375	actin; Provisional	100.0
PTZ00281	376	actin; Provisional	100.0
PTZ00466	380	actin-like protein; Provisional	100.0
KOG0676	372	consensus Actin and related proteins [Cytoskeleton	100.0
PTZ00004	378	actin-2; Provisional	100.0
PTZ00280	414	Actin-related protein 3; Provisional	100.0
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	100.0
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	100.0
KOG0679	426	consensus Actin-related protein - Arp4p/Act3p [Cyt	100.0
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	100.0
KOG0677	389	consensus Actin-related protein Arp2/3 complex, su	100.0
COG5277	444	Actin and related proteins [Cytoskeleton]	100.0
KOG0680	400	consensus Actin-related protein - Arp6p [Cytoskele	100.0
KOG0681	645	consensus Actin-related protein - Arp5p [Cytoskele	100.0
KOG0678	415	consensus Actin-related protein Arp2/3 complex, su	100.0
KOG0797	618	consensus Actin-related protein [Cytoskeleton]	100.0
PRK13930	335	rod shape-determining protein MreB; Provisional	100.0
PRK13927	334	rod shape-determining protein MreB; Provisional	100.0
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	100.0
PRK13929	335	rod-share determining protein MreBH; Provisional	100.0
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	100.0
PRK13928	336	rod shape-determining protein Mbl; Provisional	99.98
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	99.95
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	99.9
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	99.86
CHL00094	621	dnaK heat shock protein 70	99.82
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.82
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.82
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.82
PLN03184	673	chloroplast Hsp70; Provisional	99.82
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.81
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.81
PRK01433	595	hscA chaperone protein HscA; Provisional	99.81
PRK13411	653	molecular chaperone DnaK; Provisional	99.8
PRK05183	616	hscA chaperone protein HscA; Provisional	99.8
PRK13410	668	molecular chaperone DnaK; Provisional	99.8
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.78
PRK11678	450	putative chaperone; Provisional	99.7
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.69
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.68
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	99.63
PRK09472	420	ftsA cell division protein FtsA; Reviewed	99.62
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	99.58
KOG0100	663	consensus Molecular chaperones GRP78/BiP/KAR2, HSP	99.53
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	99.45
KOG0101	620	consensus Molecular chaperones HSP70/HSC70, HSP70	99.43
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	99.37
PRK13917	344	plasmid segregation protein ParM; Provisional	99.32
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	99.28
TIGR03739	320	PRTRC_D PRTRC system protein D. A novel genetic sy	99.27
KOG0104	902	consensus Molecular chaperones GRP170/SIL1, HSP70	99.2
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	99.13
KOG0103	727	consensus Molecular chaperones HSP105/HSP110/SSE1,	99.03
KOG0102	640	consensus Molecular chaperones mortalin/PBP74/GRP7	98.73
PF06406	318	StbA: StbA protein; InterPro: IPR009440 This entry	98.55
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	98.54
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	98.3
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	98.22
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	98.18
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	98.16
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	98.13
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	97.33
PRK13317	277	pantothenate kinase; Provisional	97.26
PF08841	332	DDR: Diol dehydratase reactivase ATPase-like domai	96.76
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.42
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	96.15
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	95.84
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	95.73
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	95.47
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	95.42
PRK09557	301	fructokinase; Reviewed	95.2
PRK10854	513	exopolyphosphatase; Provisional	94.94
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	94.81
PRK03011	358	butyrate kinase; Provisional	94.52
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	94.29
COG4819	473	EutA Ethanolamine utilization protein, possible ch	92.42
PF01968	290	Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr	92.28
PF02541	285	Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I	91.63
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	91.19
COG2441	374	Predicted butyrate kinase [Energy production and c	91.09
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	89.28
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	87.17
PRK13321	256	pantothenate kinase; Reviewed	86.97
PRK13324	258	pantothenate kinase; Reviewed	86.31
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	84.88
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	84.69
PRK13318	258	pantothenate kinase; Reviewed	83.14
COG1548	330	Predicted transcriptional regulator/sugar kinase [	82.45
TIGR00671	243	baf pantothenate kinase, type III. This model desc	82.03
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	81.15

>PTZ00452 actin; Provisional

Probab=100.00  E-value=4.8e-83  Score=604.57  Aligned_cols=371  Identities=56%  Similarity=1.023  Sum_probs=346.9

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHH
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK   86 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~   86 (377)
                      .++||||+||+++|+||+|++.|++++||++++++......+...+++++|+++....+...+++|+++|.|.|||.++.
T Consensus         5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~   84 (375)
T PTZ00452          5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI   84 (375)
T ss_pred             CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence            45899999999999999999999999999999987653222333456789999887777889999999999999999999


Q ss_pred             HHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEE
Q 017124           87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP  166 (377)
Q Consensus        87 ~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~  166 (377)
                      +|+|+|.+.|+++++++|+++++|+++++..|+++++++||.+++|++++.+++++++|++|+++|+|||+|++.|+|+|
T Consensus        85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P  164 (375)
T PTZ00452         85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP  164 (375)
T ss_pred             HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence            99999989999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC
Q 017124          167 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD  246 (377)
Q Consensus       167 v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  246 (377)
                      |+||+++.++..++++||++++++|.++|.++++++....+.+.++++|+++||++.|++++.............|.+||
T Consensus       165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD  244 (375)
T PTZ00452        165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD  244 (375)
T ss_pred             EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence            99999999999999999999999999999988888887777889999999999999998877665444344567899999


Q ss_pred             CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCC
Q 017124          247 GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSS  326 (377)
Q Consensus       247 ~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~  326 (377)
                      |+.|.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||++++|..
T Consensus       245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~  324 (375)
T PTZ00452        245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ  324 (375)
T ss_pred             CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       327 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      .++++..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus       325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence            899999999999999999999999999999999999999999999999997

>PTZ00281 actin; Provisional

Probab=100.00  E-value=6.8e-83  Score=605.32  Aligned_cols=376  Identities=90%  Similarity=1.408  Sum_probs=352.8

Q ss_pred             CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCH
Q 017124            2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW   81 (377)
Q Consensus         2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      |.+++.++||||+||+++|+||+|++.|+.++||.++++++.....+.++.+.++|+++........+++|+++|.|.||
T Consensus         1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw   80 (376)
T PTZ00281          1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW   80 (376)
T ss_pred             CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence            67889999999999999999999999999999999999877654444455678899998777777889999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017124           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      ++++.+|+++|.+.|+++++++|+++++|+++++..|+++++++||.++++++++.+++++++|++|++||+|||+|++.
T Consensus        81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~  160 (376)
T PTZ00281         81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV  160 (376)
T ss_pred             HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017124          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS  241 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                      |+|+||+||+++.++..++++||++++++|+++|.++++++.+..+.+.++++|+++|||+.+++.+.+...........
T Consensus       161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~  240 (376)
T PTZ00281        161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS  240 (376)
T ss_pred             EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence            99999999999999999999999999999999999888888777778899999999999999987776654444455678


Q ss_pred             EEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017124          242 YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITA  321 (377)
Q Consensus       242 ~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~  321 (377)
                      |.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||++
T Consensus       241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~  320 (376)
T PTZ00281        241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA  320 (376)
T ss_pred             EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      ++|...+++++.++++.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus       321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~  376 (376)
T PTZ00281        321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF  376 (376)
T ss_pred             hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence            99988899999999999999999999999999999999999999999999999997

>PTZ00466 actin-like protein; Provisional

Probab=100.00  E-value=8.4e-82  Score=596.57  Aligned_cols=370  Identities=53%  Similarity=0.973  Sum_probs=345.6

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHH
Q 017124            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME   85 (377)
Q Consensus         6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      +.++||||+||+++|+||+|++.|++++||++++++......+...++.++|+++....+...+++|+++|.|.|||.++
T Consensus        11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e   90 (380)
T PTZ00466         11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME   90 (380)
T ss_pred             cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence            46789999999999999999999999999999998866544444456788999987777777899999999999999999


Q ss_pred             HHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEE
Q 017124           86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV  165 (377)
Q Consensus        86 ~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  165 (377)
                      .+|+++| +.|++++.++|+++++|+++++..|+++++++||.+++|++++.+++++|+|++|+++|+|||+|++.|+|+
T Consensus        91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~  169 (380)
T PTZ00466         91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV  169 (380)
T ss_pred             HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence            9999998 889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC
Q 017124          166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP  245 (377)
Q Consensus       166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  245 (377)
                      ||+||+++.++..++++||++++++|+++|.+++..+.+..+.+.++++|+++||++.|+.++..... .......|.+|
T Consensus       170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP  248 (380)
T PTZ00466        170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP  248 (380)
T ss_pred             EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence            99999999999999999999999999999998888777777889999999999999999877665332 22245789999


Q ss_pred             CCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCC
Q 017124          246 DGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPS  325 (377)
Q Consensus       246 ~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~  325 (377)
                      ||..|.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||+|+||+|++|||.+||++||+++.|.
T Consensus       249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~  328 (380)
T PTZ00466        249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK  328 (380)
T ss_pred             CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      ..++++..++++++++|+|||++|++.+|++.||||+||+|+|+++++||||
T Consensus       329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~  380 (380)
T PTZ00466        329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF  380 (380)
T ss_pred             CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence            8899999999999999999999999999999999999999999999999997

>KOG0676 consensus Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=5.7e-82  Score=577.48  Aligned_cols=369  Identities=81%  Similarity=1.314  Sum_probs=350.5

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      ..+.++||||+||..+|+||+||+.|+.++||.++++++...+.++.+++.++|+++...+   .+++|+++|.|.|||+
T Consensus         4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~   80 (372)
T KOG0676|consen    4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD   80 (372)
T ss_pred             cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence            4456899999999999999999999999999999999999998888899999999998776   7799999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceE
Q 017124           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|.|+|++.|.++|+++|+++++|+++|...|+++++++||.|++|++++...+++  |++|+++|+|||+|++.|.
T Consensus        81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~  158 (372)
T KOG0676|consen   81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH  158 (372)
T ss_pred             HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence            99999999999999999999999999999999999999999999999999999554434  9999999999999999999


Q ss_pred             EEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ++||++|++++++..+.++||++++++++..|.++++++....+.+.++++|+++||+..|++++++...........|.
T Consensus       159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~  238 (372)
T KOG0676|consen  159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE  238 (372)
T ss_pred             eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence            99999999999999999999999999999999999999998889999999999999999999988877444455667799


Q ss_pred             cCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcC
Q 017124          244 LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALA  323 (377)
Q Consensus       244 ~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~  323 (377)
                      +|||+.+.++.+||.++|++|+|+.++.+..+|++.+.++|.+||+|+|+.|+.||+|+||++.+|||.+||++||+.+.
T Consensus       239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~  318 (372)
T KOG0676|consen  239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA  318 (372)
T ss_pred             CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      |...+++++.+|++.+++|+||||+|++.+|+.+||||+||+|.|+++++||||
T Consensus       319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence            999999999999999999999999999999999999999999999999999998

>PTZ00004 actin-2; Provisional

Probab=100.00  E-value=1.3e-80  Score=590.52  Aligned_cols=376  Identities=80%  Similarity=1.297  Sum_probs=350.2

Q ss_pred             CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCH
Q 017124            2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW   81 (377)
Q Consensus         2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      |+-++.++||||+||+++|+||+|++.|++++||+++++++.....+...+..++|+++....+...+++|+++|.|.||
T Consensus         1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~   80 (378)
T PTZ00004          1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW   80 (378)
T ss_pred             CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence            56788999999999999999999999999999999999887554444445678899998776666789999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017124           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      |.++.+|+++|.+.|++++.++|+++++|+++++..|+.+++++||.++++++++.+++++|+|++|.+||+|||+|++.
T Consensus        81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~  160 (378)
T PTZ00004         81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  160 (378)
T ss_pred             HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCC-Ccce
Q 017124          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSS-AVEK  240 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~-~~~~  240 (377)
                      |+|+||+||+++.++..++++||++++++|+++|.+++..+....+.+.++++|+++|+++.|++++........ ....
T Consensus       161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~  240 (378)
T PTZ00004        161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE  240 (378)
T ss_pred             EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence            999999999999999999999999999999999998888877777788999999999999999987765433222 2367


Q ss_pred             eEEcCCCcEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017124          241 SYELPDGQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI  319 (377)
Q Consensus       241 ~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL  319 (377)
                      .|.+|||..+.++.+||.++|+||+|++++.+ ..+|+++|.++|.+||.|.|+.|++||+|+||+|++|||.+||++||
T Consensus       241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL  320 (378)
T PTZ00004        241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL  320 (378)
T ss_pred             EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence            89999999999999999999999999998887 89999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      ++++|...++++..++++.+++|+|||++|++.+|+++||||+||+|+|++++.||||
T Consensus       321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~  378 (378)
T PTZ00004        321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF  378 (378)
T ss_pred             HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence            9999988889999999999999999999999999999999999999999999999997

>PTZ00280 Actin-related protein 3; Provisional

Probab=100.00  E-value=2.3e-74  Score=554.51  Aligned_cols=369  Identities=42%  Similarity=0.753  Sum_probs=331.5

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc---ccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      .++||||+||+++|+||+|++.|++++||++++++.....   .+....++++|+++........+++|+++|.|.|||.
T Consensus         4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~   83 (414)
T PTZ00280          4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL   83 (414)
T ss_pred             CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence            5689999999999999999999999999999987653211   1112336789999988777789999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhc----------CCceEE
Q 017124           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----------GRTTGI  153 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l  153 (377)
                      ++.+|+++|.+.|++++.++|+++++|++++...|+.+++++||.++++++++..++++|+|++          |.++|+
T Consensus        84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl  163 (414)
T PTZ00280         84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT  163 (414)
T ss_pred             HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence            9999999988899999999999999999999999999999999999999999999999999999          999999


Q ss_pred             EEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhc
Q 017124          154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAK  233 (377)
Q Consensus       154 VVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~  233 (377)
                      |||+|++.|+|+||++|+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++||+..++.++.....
T Consensus       164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~  243 (414)
T PTZ00280        164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD  243 (414)
T ss_pred             EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence            99999999999999999999999999999999999999999998888777666778999999999999999887776543


Q ss_pred             cC-CCcceeEEcCC---C--cEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017124          234 SS-SAVEKSYELPD---G--QVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST  306 (377)
Q Consensus       234 ~~-~~~~~~~~~~~---~--~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s  306 (377)
                      .. ......|.+||   +  ..+.++.+||.++|+||+|++++.. ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus       244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s  323 (414)
T PTZ00280        244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST  323 (414)
T ss_pred             cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence            21 22345688876   3  3789999999999999999887654 4599999999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHhcC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCc
Q 017124          307 MFPGIADRMSREITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPA  370 (377)
Q Consensus       307 ~i~gl~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~  370 (377)
                      ++|||.+||++||++++                |...+++++.++++.+++|+|||++|++.+|+++||||+||+|+|++
T Consensus       324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~  403 (414)
T PTZ00280        324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS  403 (414)
T ss_pred             cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence            99999999999999986                34567899999989999999999999999999999999999999999


Q ss_pred             ccccc
Q 017124          371 IVHRK  375 (377)
Q Consensus       371 ~~~~k  375 (377)
                      +++||
T Consensus       404 i~~~~  408 (414)
T PTZ00280        404 ICRYN  408 (414)
T ss_pred             heeec
Confidence            99886

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=100.00  E-value=5.9e-75  Score=558.00  Aligned_cols=368  Identities=52%  Similarity=0.973  Sum_probs=323.1

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +++.++||||+||+++|+||+|++.|+.++|++++++.....     ..++++|++.........+++|+++|.+.||+.
T Consensus         1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~   75 (393)
T PF00022_consen    1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA   75 (393)
T ss_dssp             -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred             CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence            478999999999999999999999999999999998776532     125778988666566678999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceE
Q 017124           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|+++|.+.|..++++++|++++|+++++..|+.+++++||.+++++++++++++||+|++|.++|||||+|++.|+
T Consensus        76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~  155 (393)
T PF00022_consen   76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS  155 (393)
T ss_dssp             HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred             cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCC-----------------cchhHHHHHHHHHHhcceeecCHH
Q 017124          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----------------TTTAEREIVRDMKEKLAYVALDYE  226 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----------------~~~~~~~~~~~ik~~~~~v~~~~~  226 (377)
                      |+||+||+++.++..++++||++++++|+++|.+++...                 ....+...++++|++.|+++.++.
T Consensus       156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~  235 (393)
T PF00022_consen  156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD  235 (393)
T ss_dssp             EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred             eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence            999999999999999999999999999999999864332                 233467889999999999999887


Q ss_pred             HHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCC-------ChHHHHHHHHhcCChhHHHHhhcCc
Q 017124          227 QELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAA-------GIHETTYNSIMKCDVDIRKDLYGNI  299 (377)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI  299 (377)
                      ... ...........|.+|||+.+.++.+|+.++|+||+|+..+.+..       +|+++|.++|.+||.|.|+.|++||
T Consensus       236 ~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI  314 (393)
T PF00022_consen  236 EEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI  314 (393)
T ss_dssp             HHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred             ccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence            511 11122456788999999999999999999999999999887766       9999999999999999999999999


Q ss_pred             eeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC-CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          300 VLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       300 vl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      +||||+|++|||.+||++||.++.|...+++++.++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus       315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~  393 (393)
T PF00022_consen  315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF  393 (393)
T ss_dssp             EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred             EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence            999999999999999999999999988899999999 999999999999999999999999999999999999999997

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>smart00268 ACTIN Actin

Probab=100.00  E-value=1.1e-73  Score=544.92  Aligned_cols=369  Identities=68%  Similarity=1.185  Sum_probs=339.3

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHHH
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI   87 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~   87 (377)
                      ++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus         2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i   80 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI   80 (373)
T ss_pred             CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence            58999999999999999999999999999998865432111 23467899998766666689999999999999999999


Q ss_pred             HHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017124           88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI  167 (377)
Q Consensus        88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v  167 (377)
                      |+++|.+.|+.++.++|+++++|.+++...|+.+++++||.++++++++++++++|+|++|.++|+|||+|+++|+|+||
T Consensus        81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv  160 (373)
T smart00268       81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV  160 (373)
T ss_pred             HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence            99999778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhcc---CCCcceeEEc
Q 017124          168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS---SSAVEKSYEL  244 (377)
Q Consensus       168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~  244 (377)
                      +||.++.++..++++||++++++|.++|++++..+....+.+.++++|+++|++..++.++++....   .......|.+
T Consensus       161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l  240 (373)
T smart00268      161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL  240 (373)
T ss_pred             ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence            9999999999999999999999999999886656655667789999999999999998877664432   2345678999


Q ss_pred             CCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCC
Q 017124          245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP  324 (377)
Q Consensus       245 ~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~  324 (377)
                      |||..+.++.+|+.++|+||+|+.++.+..+|+++|.++|.+||.|.|+.+++||+||||+|++|||.+||++||+++.|
T Consensus       241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p  320 (373)
T smart00268      241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP  320 (373)
T ss_pred             CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      ...++++..++++.+++|.|||++|++++|.++||||+||+|+|+++++||||
T Consensus       321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~  373 (373)
T smart00268      321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF  373 (373)
T ss_pred             CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence            88889999999999999999999999999999999999999999999999997

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]

Probab=100.00  E-value=2.2e-72  Score=499.56  Aligned_cols=368  Identities=41%  Similarity=0.760  Sum_probs=318.9

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccc-ccccceeeceecCCccCCHH
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWD   82 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~p~~~g~i~d~~   82 (377)
                      ++|...||||+||+++|+||+|++.|++++|+.++.....+.-. .+.+.++++.++.. .+....++.|+++|.+.|||
T Consensus         8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD   86 (426)
T KOG0679|consen    8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWD   86 (426)
T ss_pred             ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcccHH
Confidence            67889999999999999999999999999999998632221111 12334678877754 35556889999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCce
Q 017124           83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS  162 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t  162 (377)
                      .++.+|+|.|.++|+.+|.++|+++++|+++++..|++++|.+||.+++|+++++..++|++|+.|+.||||||||+++|
T Consensus        87 ~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~  166 (426)
T KOG0679|consen   87 LFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHT  166 (426)
T ss_pred             HHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCc
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchh---------------------------------HHH
Q 017124          163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTA---------------------------------ERE  209 (377)
Q Consensus       163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~---------------------------------~~~  209 (377)
                      +|+||+||+++.+++++.++||+.|+..+++.|+.+++++.+..                                 ...
T Consensus       167 svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~  246 (426)
T KOG0679|consen  167 SVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQR  246 (426)
T ss_pred             eeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877654210                                 012


Q ss_pred             HHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCC------------CCCCChH
Q 017124          210 IVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIG------------MEAAGIH  277 (377)
Q Consensus       210 ~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~------------~~~~~l~  277 (377)
                      .++++|++.+.+...+-.+..   .....+++|++|||....++.+||+++|.||.|++..            ....|++
T Consensus       247 v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~  323 (426)
T KOG0679|consen  247 VYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLP  323 (426)
T ss_pred             HHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCch
Confidence            355555555555422211111   1124678999999999999999999999999998752            2356899


Q ss_pred             HHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC---CCccccchhhhhhhccccc
Q 017124          278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTF  354 (377)
Q Consensus       278 ~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~~  354 (377)
                      +++..+|..||+|+|..|+.|||+|||+|.|+||.+||+.||+.+.|.. +++++...   ++.+++|+||||+|+|++|
T Consensus       324 ~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtF  402 (426)
T KOG0679|consen  324 HLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTF  402 (426)
T ss_pred             HHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccH
Confidence            9999999999999999999999999999999999999999999999997 89998764   7899999999999999999


Q ss_pred             ccccccHHHHhhcCC-ccccccc
Q 017124          355 QQMWISKGEYDESGP-AIVHRKC  376 (377)
Q Consensus       355 ~~~~itr~~y~e~G~-~~~~~k~  376 (377)
                      ..+|++|+||+|.|. +.+.|||
T Consensus       403 qq~WiSKqEYEE~G~d~~ve~rc  425 (426)
T KOG0679|consen  403 QQLWISKQEYEEVGKDQLVERRC  425 (426)
T ss_pred             HHHhhhHHHHHHhhhHHHHhhcC
Confidence            999999999999999 8899998

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=100.00  E-value=3.6e-71  Score=527.04  Aligned_cols=367  Identities=71%  Similarity=1.206  Sum_probs=335.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccccc-ceeeceecCCccCCHHHHHHH
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKI   87 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~~~   87 (377)
                      +||||+||+++|+||++++.|++++||++++++......+.+...+++|+++....+. ..+++|+++|.+.||+.++.+
T Consensus         1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~   80 (371)
T cd00012           1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI   80 (371)
T ss_pred             CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence            6899999999999999999999999999998876543333345678999998776553 789999999999999999999


Q ss_pred             HHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017124           88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI  167 (377)
Q Consensus        88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v  167 (377)
                      |+++|.+.|..+++++++++++|+++++..|+.+++++||.++++++++++++++|+|++|.++|+|||+|+++|+|+||
T Consensus        81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv  160 (371)
T cd00012          81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV  160 (371)
T ss_pred             HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence            99999888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHH-hccCCCcceeEEcCC
Q 017124          168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEA-AKSSSAVEKSYELPD  246 (377)
Q Consensus       168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~  246 (377)
                      +||+++.++..++++||+++++++.++|.+++..+....+...++++|+++|+++.++.++... ..........|.+||
T Consensus       161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd  240 (371)
T cd00012         161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD  240 (371)
T ss_pred             ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence            9999999989999999999999999999888876666677889999999999999988766522 222334567899999


Q ss_pred             CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCC-
Q 017124          247 GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPS-  325 (377)
Q Consensus       247 ~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~-  325 (377)
                      +..+.++.+|+.++|+||.|+..+....+|++.|.++|..||.+.|+.+++||+||||+|++|||.+||+++|..+.|. 
T Consensus       241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~  320 (371)
T cd00012         241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS  320 (371)
T ss_pred             CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence            9999999999999999999998888889999999999999999999999999999999999999999999999999987 


Q ss_pred             -CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017124          326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRK  375 (377)
Q Consensus       326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k  375 (377)
                       ...+++...++|.+++|.|||++|++.+|+++||||+||+|+|+++++||
T Consensus       321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k  371 (371)
T cd00012         321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK  371 (371)
T ss_pred             cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence             56678888889999999999999999999999999999999999999987

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]

Probab=100.00  E-value=9.9e-71  Score=465.13  Aligned_cols=371  Identities=50%  Similarity=0.916  Sum_probs=344.6

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc-cccC-CCccceeccccccccccceeeceecCCccCCHH
Q 017124            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV-MVGM-GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD   82 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~-~~~~-~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~   82 (377)
                      ++.++||.|+||.++|+||+|++-|.+++|+.+++|--... ..+. .-++..||+++.+.++..++.||+++|.+.||+
T Consensus         2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd   81 (389)
T KOG0677|consen    2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD   81 (389)
T ss_pred             CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence            45899999999999999999999999999999999743221 1221 236788999999888889999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCce
Q 017124           83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS  162 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t  162 (377)
                      +++++|+|.|.++|++++.+.++++++||++|...|+++++..||+++|..+++.-++++++|+.|..+|+|||.|.+.|
T Consensus        82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT  161 (389)
T KOG0677|consen   82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT  161 (389)
T ss_pred             HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeE
Q 017124          163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY  242 (377)
Q Consensus       163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      .|+||++|..+++-..+.+++|++++++|.++|..+|+.+..+++.+.++.+|+++||++-|++.+.+..........+|
T Consensus       162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y  241 (389)
T KOG0677|consen  162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY  241 (389)
T ss_pred             EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999988887777777788999


Q ss_pred             EcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhc
Q 017124          243 ELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITAL  322 (377)
Q Consensus       243 ~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~  322 (377)
                      .+|||..|.++.+||.+||+||+|.+++.+.+++.+++.++|+..++|.|..+.++|+|+||+++-|||..||++||+++
T Consensus       242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql  321 (389)
T KOG0677|consen  242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL  321 (389)
T ss_pred             ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             CC-----------CCceEEEECCCCCccccchhhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017124          323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWISKGEYDESGPAIVHRK  375 (377)
Q Consensus       323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~~y~e~G~~~~~~k  375 (377)
                      .-           ...++++-.+|.+..-+|+||+++|.+ ..-+++|+||+||+|.|++.+.+.
T Consensus       322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~  386 (389)
T KOG0677|consen  322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL  386 (389)
T ss_pred             HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence            52           235688888999999999999999986 566799999999999999887653

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=100.00  E-value=7.7e-67  Score=495.47  Aligned_cols=374  Identities=55%  Similarity=1.002  Sum_probs=339.1

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecC-CCCccccCCCccceeccccccccc--cceeeceecCCccCC
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN   80 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d   80 (377)
                      .++.++||||+||+++|+||+|++.|++++|+++++.+ +...+....+.+.++|+++....+  ...+++|+++|.|.|
T Consensus         3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~   82 (444)
T COG5277           3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN   82 (444)
T ss_pred             CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence            45555699999999999999999999999999999886 444444555778889999877655  678899999999999


Q ss_pred             HHHHHHHHHHhhcc--cccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc--eEEEEe
Q 017124           81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--TGIVLD  156 (377)
Q Consensus        81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD  156 (377)
                      |+.++++|+++|.+  .+...+.++|+++++|++++...|+.+++++||.++++++++..++++++|+.|..  +|+|||
T Consensus        83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD  162 (444)
T COG5277          83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID  162 (444)
T ss_pred             cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence            99999999999988  68888999999999999999999999999999999999999999999999999999  999999


Q ss_pred             CCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHH-----cCCCCcch---hHHHHHHHHHHhcc-------ee
Q 017124          157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YV  221 (377)
Q Consensus       157 iG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v  221 (377)
                      +|++.|+|+||+||.++.++..++++||++++.++.++|..     +++.+...   .+.++++.+|.+.|       |+
T Consensus       163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~  242 (444)
T COG5277         163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV  242 (444)
T ss_pred             cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence            99999999999999999999999999999999999999998     66666665   56889999999999       88


Q ss_pred             ecCHHHHHHHhcc----------------CCCcceeEEcCCCcEEeeCCc-cccccccCCCCc--cCCCCCCC-------
Q 017124          222 ALDYEQELEAAKS----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--LIGMEAAG-------  275 (377)
Q Consensus       222 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~v~~~-~~~~~e~lf~p~--~~~~~~~~-------  275 (377)
                      ..+..+..+....                .......+..|++..+.++.+ ||.+||.+|.|.  ..+.+..+       
T Consensus       243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~  322 (444)
T COG5277         243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ  322 (444)
T ss_pred             hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence            7776655443322                233556788999999999998 999999999999  66555555       


Q ss_pred             --------------------hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC
Q 017124          276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP  335 (377)
Q Consensus       276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~  335 (377)
                                          |++++.++|+.+|.+.|+.|++||+||||+|++|||.+||+.||+.+.|....+++..++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~  402 (444)
T COG5277         323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP  402 (444)
T ss_pred             hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          336 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       336 ~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      +|.+.+|+|||++|++.+|..+||||+||+|+|+++++++||
T Consensus       403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~  444 (444)
T COG5277         403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF  444 (444)
T ss_pred             chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence            999999999999999999999999999999999999999986

>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]

Probab=100.00  E-value=1.4e-63  Score=433.05  Aligned_cols=362  Identities=30%  Similarity=0.573  Sum_probs=324.2

Q ss_pred             CCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccc--cceeeceecCCccCCHHH
Q 017124            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d~~~   83 (377)
                      +.+|||+|+|++++|+|+++.+.|. ++|+|..+.++.       .++.++|++..+..+  ...+++|+++|.+.+|+.
T Consensus         2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t   73 (400)
T KOG0680|consen    2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT   73 (400)
T ss_pred             CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence            5689999999999999999998897 669998876653       445778887665543  356788999999999999


Q ss_pred             HHHHHHHhhccc-ccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh-c--C--------Cce
Q 017124           84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA-S--G--------RTT  151 (377)
Q Consensus        84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~--g--------~~~  151 (377)
                      ..++|+++|.+. .+.+..++.+++++|.++-++..+...+++||+++|.++.=...+.++++- +  +        ...
T Consensus        74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c  153 (400)
T KOG0680|consen   74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC  153 (400)
T ss_pred             HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence            999999999654 456678999999999999888899999999999999999999888888875 1  1        137


Q ss_pred             EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHH
Q 017124          152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEA  231 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~  231 (377)
                      ++|||.|++.|.|+|+++|.+...++.++++||+.+++.|++.+..++.++..  +...++++|++.|||++|+.+.++.
T Consensus       154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~  231 (400)
T KOG0680|consen  154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI  231 (400)
T ss_pred             EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence            89999999999999999999999999999999999999999999888877744  7789999999999999999998876


Q ss_pred             hccC---CCcceeEEcCC-------------------CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCCh
Q 017124          232 AKSS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDV  289 (377)
Q Consensus       232 ~~~~---~~~~~~~~~~~-------------------~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~  289 (377)
                      +...   +.....|.+||                   .+.|.+..+||..||+||+|+.+++...||+++|.++|..||.
T Consensus       232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe  311 (400)
T KOG0680|consen  232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE  311 (400)
T ss_pred             HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence            6543   23456677765                   3678889999999999999999999999999999999999999


Q ss_pred             hHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017124          290 DIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP  369 (377)
Q Consensus       290 ~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~  369 (377)
                      ++|+.|+.||+++||.+++|||.+||..||++++|.++.++|..+.+|..-+|.||+-++.+++|...||||+||+|+|+
T Consensus       312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~  391 (400)
T KOG0680|consen  312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP  391 (400)
T ss_pred             HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccC
Q 017124          370 AIVHRKCF  377 (377)
Q Consensus       370 ~~~~~k~~  377 (377)
                      +.+.+|+|
T Consensus       392 ~~~~~~~~  399 (400)
T KOG0680|consen  392 SWCTKKRF  399 (400)
T ss_pred             hhhhhhcc
Confidence            99988875

>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]

Probab=100.00  E-value=6.4e-53  Score=388.89  Aligned_cols=363  Identities=28%  Similarity=0.576  Sum_probs=311.2

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccccc-ceeeceecCCccCCHHHHH
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDME   85 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~   85 (377)
                      ..|||||+||+.+|+||+|+..|+.+|++.++++++....    ..-.+||++.....+. ...++||++.+|+||+.+|
T Consensus        23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~----~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E   98 (645)
T KOG0681|consen   23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG----ASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME   98 (645)
T ss_pred             CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc----cccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence            5789999999999999999999999999999999865432    1222577765544332 4568999999999999999


Q ss_pred             HHHHHhhcccccCCC--CCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh-cCC---ceEEEEeCCC
Q 017124           86 KIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA-SGR---TTGIVLDSGD  159 (377)
Q Consensus        86 ~~~~~~~~~~L~~~~--~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g~---~~~lVVDiG~  159 (377)
                      ++++|+| .+|+.+.  -+||+++|++..+|...|..+.+.|||.+|+|+|.+--+++.++|. ++.   .+|+||++|+
T Consensus        99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~  177 (645)
T KOG0681|consen   99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH  177 (645)
T ss_pred             HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence            9999998 8999987  4799999999999999999999999999999999999999999984 333   3699999999


Q ss_pred             CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhcc-----
Q 017124          160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS-----  234 (377)
Q Consensus       160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~-----  234 (377)
                      +.|.|.||.||..+.....++++||++...||..+|+.++.-..+...+..++.++..+|+++.||.++..+...     
T Consensus       178 ~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d  257 (645)
T KOG0681|consen  178 SATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYD  257 (645)
T ss_pred             CcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhh
Confidence            999999999999999999999999999999999999877666555566788999999999999887753321110     


Q ss_pred             --------------------------------------------------------------------CCCcceeEE---
Q 017124          235 --------------------------------------------------------------------SSAVEKSYE---  243 (377)
Q Consensus       235 --------------------------------------------------------------------~~~~~~~~~---  243 (377)
                                                                                          +.+....|.   
T Consensus       258 ~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~  337 (645)
T KOG0681|consen  258 ENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLN  337 (645)
T ss_pred             ccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhc
Confidence                                                                                000000000   


Q ss_pred             c-------------------------------------------------------------------------------
Q 017124          244 L-------------------------------------------------------------------------------  244 (377)
Q Consensus       244 ~-------------------------------------------------------------------------------  244 (377)
                      +                                                                               
T Consensus       338 v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r  417 (645)
T KOG0681|consen  338 VPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDR  417 (645)
T ss_pred             chhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            0                                                                               


Q ss_pred             -----------------------------CC-------------------------------------------------
Q 017124          245 -----------------------------PD-------------------------------------------------  246 (377)
Q Consensus       245 -----------------------------~~-------------------------------------------------  246 (377)
                                                   +|                                                 
T Consensus       418 ~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d  497 (645)
T KOG0681|consen  418 KSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTD  497 (645)
T ss_pred             hhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccC
Confidence                                         00                                                 


Q ss_pred             ------------CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017124          247 ------------GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       247 ------------~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r  314 (377)
                                  ...+.++.+++++||++|+|+++|.+..||.+++..++++.|.+.++.+.+||+||||+|++||+++|
T Consensus       498 ~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeR  577 (645)
T KOG0681|consen  498 PRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKER  577 (645)
T ss_pred             cccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHH
Confidence                        02555788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCccccc
Q 017124          315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHR  374 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~  374 (377)
                      |+.||.++.|..++|.|+.+.+|.+++|.||+.+|.-.+|..-++||+||+|+|++-++.
T Consensus       578 i~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kE  637 (645)
T KOG0681|consen  578 IKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKE  637 (645)
T ss_pred             HHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987654

>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]

Probab=100.00  E-value=5.4e-51  Score=355.16  Aligned_cols=367  Identities=39%  Similarity=0.678  Sum_probs=311.7

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc--------ccCCCccceeccccccccccceeeceecCCcc
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM--------VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV   78 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~--------~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i   78 (377)
                      +.++|+|+|+.++|.||+|...|.+++|++++.......+        -+..+.+.++|++++. .+.+.+.+|+++|.+
T Consensus         4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v   82 (415)
T KOG0678|consen    4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV   82 (415)
T ss_pred             CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence            4459999999999999999999999999998765322211        1223467889999987 557889999999999


Q ss_pred             CCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC--------Cc
Q 017124           79 SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG--------RT  150 (377)
Q Consensus        79 ~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~  150 (377)
                      .|||.++++|...+.+.|...|++|--++++|++++.+.|+.++++.||.++++.+++.-++++|+-+.-        .-
T Consensus        83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l  162 (415)
T KOG0678|consen   83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL  162 (415)
T ss_pred             ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence            9999999999999999999999999999999999999999999999999999999999999998876542        25


Q ss_pred             eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHH
Q 017124          151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE  230 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~  230 (377)
                      +|+|||-|.+.|.|.||.+|+++-++++.+++.|++++..+.+++.+++...+.....+.++.+|+++||+.+|.-.+..
T Consensus       163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~  242 (415)
T KOG0678|consen  163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA  242 (415)
T ss_pred             eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence            89999999999999999999999999999999999999999999988888887777789999999999999999877765


Q ss_pred             HhccCCCcc-e---eEEcCC--CcEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceecc
Q 017124          231 AAKSSSAVE-K---SYELPD--GQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSG  303 (377)
Q Consensus       231 ~~~~~~~~~-~---~~~~~~--~~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~G  303 (377)
                      +.......- +   ....-.  ...+.++.+||..+|++|.|.+...+ ...|++.+...|+.||+|.|+.|++||++.|
T Consensus       243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg  322 (415)
T KOG0678|consen  243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG  322 (415)
T ss_pred             HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence            544322110 1   111112  23466788999999999999886544 5678999999999999999999999999999


Q ss_pred             CCcCCcChHHHHHHHHHhcCC--------------CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017124          304 GSTMFPGIADRMSREITALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP  369 (377)
Q Consensus       304 G~s~i~gl~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~  369 (377)
                      |.+..++|..|++.+++.+..              ....|+++...-..+++|-|++++|+...|-..+=||++|+|+|+
T Consensus       323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~  402 (415)
T KOG0678|consen  323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP  402 (415)
T ss_pred             chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence            999999999999988875442              112356666666679999999999999999999999999999999


Q ss_pred             ccccc
Q 017124          370 AIVHR  374 (377)
Q Consensus       370 ~~~~~  374 (377)
                      +|++.
T Consensus       403 si~r~  407 (415)
T KOG0678|consen  403 SICRT  407 (415)
T ss_pred             hhhhc
Confidence            99875

>KOG0797 consensus Actin-related protein [Cytoskeleton]

Probab=100.00  E-value=7.2e-40  Score=300.58  Aligned_cols=306  Identities=20%  Similarity=0.410  Sum_probs=240.8

Q ss_pred             cceeeceecCCccCC----------HHHHHHHHHHhhcccccCCC---CCCcEEEEeCCCCChHHHHHHhhhhccccCCC
Q 017124           66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNVP  132 (377)
Q Consensus        66 ~~~~~~p~~~g~i~d----------~~~~~~~~~~~~~~~L~~~~---~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~  132 (377)
                      .+.+++||++|.+.-          .+++.++|+|++.+.|++.+   ..+.+|+++|....+.+.+.+..++|-+++|.
T Consensus       178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~  257 (618)
T KOG0797|consen  178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN  257 (618)
T ss_pred             cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence            467899999997742          36789999999999999986   46899999999999999999999999999999


Q ss_pred             eEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCC-----CcchhH
Q 017124          133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----FTTTAE  207 (377)
Q Consensus       133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~-----~~~~~~  207 (377)
                      ++.++.+++||+|++|.+++||||||+..|+|+||.||..+.++...+++||.+|++.+..+|++.+..     +....+
T Consensus       258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d  337 (618)
T KOG0797|consen  258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID  337 (618)
T ss_pred             eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999887664     445568


Q ss_pred             HHHHHHHHHhcceeecCHHH-HHHHh--ccCCCcceeEEcCCCcEEeeCCccccccccCCCCccC---------------
Q 017124          208 REIVRDMKEKLAYVALDYEQ-ELEAA--KSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLI---------------  269 (377)
Q Consensus       208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~---------------  269 (377)
                      +..++++|+++|........ +...+  ..+......|      ++.++.+...+|-.||.|.++               
T Consensus       338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~ky------tfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q  411 (618)
T KOG0797|consen  338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKY------TFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQ  411 (618)
T ss_pred             HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceee------eeeccchhhccchhhhhhhhhhccccccccccccCC
Confidence            99999999999987532111 00000  0111111111      111122222222222222211               


Q ss_pred             --------------------------------------------------------------------------------
Q 017124          270 --------------------------------------------------------------------------------  269 (377)
Q Consensus       270 --------------------------------------------------------------------------------  269 (377)
                                                                                                      
T Consensus       412 ~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n  491 (618)
T KOG0797|consen  412 PDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMN  491 (618)
T ss_pred             CCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhc
Confidence                                                                                            


Q ss_pred             ----CC----CCCChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCC----ceEEEECCC-
Q 017124          270 ----GM----EAAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSS----MKIKVVAPP-  335 (377)
Q Consensus       270 ----~~----~~~~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~----~~v~v~~~~-  335 (377)
                          -.    -...+.+.|..+|..+ ..|.+++|.+.|.++||....||+.+.|++.+....|..    ..|.|+.+| 
T Consensus       492 ~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~pr  571 (618)
T KOG0797|consen  492 KKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPR  571 (618)
T ss_pred             ccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCc
Confidence                00    0123455677777776 668899999999999999999999999999998877652    247777665 


Q ss_pred             --CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          336 --ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       336 --~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                        +|++-+|+||+|+|.++.-.++||++.||.-+|.++++.||+
T Consensus       572 dMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~  615 (618)
T KOG0797|consen  572 DMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY  615 (618)
T ss_pred             CCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence              899999999999999998899999999999999999999984

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=100.00  E-value=7.8e-38  Score=294.13  Aligned_cols=306  Identities=19%  Similarity=0.255  Sum_probs=234.3

Q ss_pred             EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHHH
Q 017124           10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME   85 (377)
Q Consensus        10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      ++||+||+++|+|++++. +.+..||+++.....       ++..++|+++....    ....+++|+++|.+.||+.++
T Consensus        11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e   82 (335)
T PRK13930         11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE   82 (335)
T ss_pred             eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence            999999999999998765 456679998875421       23468999987652    346789999999999999999


Q ss_pred             HHHHHhhcccccCC-CCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCC
Q 017124           86 KIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGD  159 (377)
Q Consensus        86 ~~~~~~~~~~L~~~-~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~  159 (377)
                      .+|++++.+.+... ....++++++|..++..+|+.+.+ +||.+|++.++++++|+||++++|.     ++++|||+|+
T Consensus        83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~  161 (335)
T PRK13930         83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG  161 (335)
T ss_pred             HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence            99999994444432 336789999999999998887777 6799999999999999999999987     5789999999


Q ss_pred             CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017124          160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE  239 (377)
Q Consensus       160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~  239 (377)
                      ++|+++++.+|.++  .....++||+++++.+.+++.++ +.+.  ...+.+|++|+++|++..+.+.+.  ..... ..
T Consensus       162 gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~--~~~~~-~~  233 (335)
T PRK13930        162 GTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEES--MEVRG-RD  233 (335)
T ss_pred             CeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCce--EEEEC-cc
Confidence            99999999999988  45668999999999999998754 2221  134679999999998865432110  00000 00


Q ss_pred             eeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHHHH
Q 017124          240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSRE  318 (377)
Q Consensus       240 ~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~rl~~e  318 (377)
                      ..+.+|+  .+.++.+++  .|++|.+      ...+.+.|.+++.+++.+.+..+++| |+||||+|++|||.+||+++
T Consensus       234 ~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~  303 (335)
T PRK13930        234 LVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE  303 (335)
T ss_pred             CCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHH
Confidence            0111121  334444444  3667655      13588889999999999999999987 99999999999999999999


Q ss_pred             HHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          319 ITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +.        +++....+|..++-.||++++.
T Consensus       304 ~~--------~~v~~~~~p~~ava~Ga~~~~~  327 (335)
T PRK13930        304 TG--------LPVHIAEDPLTCVARGTGKALE  327 (335)
T ss_pred             HC--------CCceecCCHHHHHHHHHHHHHh
Confidence            84        2333445678899999999874

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=100.00  E-value=4.7e-36  Score=281.79  Aligned_cols=306  Identities=19%  Similarity=0.242  Sum_probs=228.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHH
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM   84 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~   84 (377)
                      .|+||+||+++|+|+++++. .+.+||+++.++..       ...+++|+++....    ....+.+|+++|.+.||+..
T Consensus         7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~   78 (334)
T PRK13927          7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT   78 (334)
T ss_pred             eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence            59999999999999998866 56789999987542       12468999987652    45678899999999999999


Q ss_pred             HHHHHHhhcccccCCCCCC-cEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCC
Q 017124           85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG  158 (377)
Q Consensus        85 ~~~~~~~~~~~L~~~~~~~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG  158 (377)
                      +.+|++++.+.++. ..++ .+++++|..++..+| +.++.+|+.+|++.+.++++|+||++++|.     ++++|||+|
T Consensus        79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG  156 (334)
T PRK13927         79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG  156 (334)
T ss_pred             HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence            99999999777766 5445 578888866655555 567777899999999999999999999986     467999999


Q ss_pred             CCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCC
Q 017124          159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSA  237 (377)
Q Consensus       159 ~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      +++|+++++ .+|....+   ..++||++++++|.+++.++. .+.  .+.+.++++|+++|++..+.+..  ..... .
T Consensus       157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~~-~  227 (334)
T PRK13927        157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EMEVR-G  227 (334)
T ss_pred             CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEEe-C
Confidence            999999999 66655433   358999999999999886432 221  13467999999999875432100  00000 0


Q ss_pred             cceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHH
Q 017124          238 VEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       238 ~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~  316 (377)
                      ....+.+|  ..+.++.+++  .|++|.+      ...+.+.|.++|.+++.+.+..+++ +|+||||+|++||+.++|+
T Consensus       228 ~~~~~~~~--~~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~  297 (334)
T PRK13927        228 RDLVTGLP--KTITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS  297 (334)
T ss_pred             cccCCCCC--eEEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence            00001111  1344555554  3666665      1358889999999999888888887 5999999999999999999


Q ss_pred             HHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          317 REITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +++.        +++....+|..++-.||++++.-
T Consensus       298 ~~~~--------~~v~~~~~P~~ava~Ga~~~~~~  324 (334)
T PRK13927        298 EETG--------LPVHVAEDPLTCVARGTGKALEN  324 (334)
T ss_pred             HHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence            9983        23344456789999999998743

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=100.00  E-value=1.5e-35  Score=277.90  Aligned_cols=310  Identities=16%  Similarity=0.214  Sum_probs=230.9

Q ss_pred             EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHHHHH
Q 017124           10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME   85 (377)
Q Consensus        10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      +.||+||.++++...+ ..-.+..||+++..++.+   +.....++||++|...    .....+++|+++|.|.||+..+
T Consensus         5 ~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~   80 (333)
T TIGR00904         5 IGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE   80 (333)
T ss_pred             eEEecCcceEEEEECC-CCEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence            9999999999986543 223446788887654321   1112346799998775    2456789999999999999999


Q ss_pred             HHHHHhhcccccCCCCC-CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCC
Q 017124           86 KIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGD  159 (377)
Q Consensus        86 ~~~~~~~~~~L~~~~~~-~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~  159 (377)
                      .+|++++.+.+...... .++++++|+.++..+|+. ++.+|+.+|++.+.++++|+||++++|.     .+++|||+|+
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~  159 (333)
T TIGR00904        81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG  159 (333)
T ss_pred             HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence            99999997666542222 369999999999999887 5557799999999999999999999987     6789999999


Q ss_pred             CceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCc
Q 017124          160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAV  238 (377)
Q Consensus       160 ~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~  238 (377)
                      ++|+++++ .+|.....   ..++||+++++.|.+++.++. ..  ..+.+.+|++|+++|++..+..++... .. ...
T Consensus       160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~-~~-~~~  231 (333)
T TIGR00904       160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRKM-EV-RGR  231 (333)
T ss_pred             CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccce-ee-cCc
Confidence            99999999 66655533   348999999999999886432 11  123467999999999876542211100 00 001


Q ss_pred             ceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017124          239 EKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSR  317 (377)
Q Consensus       239 ~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~~  317 (377)
                      ...+.+|++.  .++.  ..+.|++|.|      ..++.+.|.+++.+++.+.+..+++ +|+||||+|++||+.+||++
T Consensus       232 ~~~~~~~~~~--~i~~--~~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~  301 (333)
T TIGR00904       232 DLVTGLPRTI--EITS--VEVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK  301 (333)
T ss_pred             cccCCCCeEE--EECH--HHHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence            1123344433  3332  2466777776      2358888999999999998888986 79999999999999999999


Q ss_pred             HHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      ++.        +.+....+|..++-.||++++.
T Consensus       302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~  326 (333)
T TIGR00904       302 ETG--------LPVIVADDPLLCVAKGTGKALE  326 (333)
T ss_pred             HHC--------CCceecCChHHHHHHHHHHHHh
Confidence            993        2445556789999999999864

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=100.00  E-value=2.6e-35  Score=275.66  Aligned_cols=302  Identities=18%  Similarity=0.320  Sum_probs=229.1

Q ss_pred             CEEEeCCCCceEEeeeCCCCCC-CCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHH
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~-~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~   83 (377)
                      .+.||+||.++++ |.. ..+. ...||+++.....       ..-.+||++|....    +...+.+|+++|.|.||+.
T Consensus         6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~   76 (335)
T PRK13929          6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM   76 (335)
T ss_pred             eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence            5999999999998 433 2333 3468888764321       12357999997763    4567789999999999999


Q ss_pred             HHHHHHHhhcc---cccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC-----CceEEEE
Q 017124           84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVL  155 (377)
Q Consensus        84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV  155 (377)
                      .+.+|++++.+   .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++|     ..+++||
T Consensus        77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv  155 (335)
T PRK13929         77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV  155 (335)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence            99999999863   46665656789999999999999999999 779999999999999999999997     4679999


Q ss_pred             eCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccC
Q 017124          156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSS  235 (377)
Q Consensus       156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~  235 (377)
                      |+|+++|+++++..|..+  .....++||++++++|.+++.+. +.+..  +...+|++|+++|++..+..++.  ....
T Consensus       156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~--~~v~  228 (335)
T PRK13929        156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPET--MEVR  228 (335)
T ss_pred             EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCce--EEEe
Confidence            999999999999555444  23446899999999999998653 22222  34679999999998754421110  0000


Q ss_pred             CCcceeEEcCCCcEEeeCCcccc--ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChH
Q 017124          236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA  312 (377)
Q Consensus       236 ~~~~~~~~~~~~~~i~v~~~~~~--~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~  312 (377)
                       .....+.+|  ..+.++.+++.  +.|.+|+          +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus       229 -g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~  295 (335)
T PRK13929        229 -GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK  295 (335)
T ss_pred             -CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence             000011122  35566666665  4566654          8999999999999999999998 699999999999999


Q ss_pred             HHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017124          313 DRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                      +++++++.-        .+....+|..++-.|+..+
T Consensus       296 e~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        296 EWLSEEIVV--------PVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             HHHHHHHCC--------CceeCCCHHHHHHHHHHHH
Confidence            999999932        3334567889999998776

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=100.00  E-value=2.5e-33  Score=256.75  Aligned_cols=305  Identities=18%  Similarity=0.269  Sum_probs=218.8

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHHH
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +.+.||+||.+|++ |..+..=.+..||+++.++..       ..-..+|++|..+    .....+.+|+++|.|.|++.
T Consensus         2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~   73 (326)
T PF06723_consen    2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA   73 (326)
T ss_dssp             SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred             CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence            45899999999999 444444445568888876653       2335689999776    34578999999999999999


Q ss_pred             HHHHHHHhhcccccC-CCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeC
Q 017124           84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDS  157 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi  157 (377)
                      .+.++++++.+..+. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+|||+++|.     ...+||||
T Consensus        74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI  152 (326)
T PF06723_consen   74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI  152 (326)
T ss_dssp             HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred             HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence            999999999666664 345667999999999999999999998 56999999999999999999984     47899999


Q ss_pred             CCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCC
Q 017124          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSA  237 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      |+++|+++.+..|.++  ....+++||+++++.+.+++++++ ++.  ....++|++|.+++++....++.  ..     
T Consensus       153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~-----  220 (326)
T PF06723_consen  153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SM-----  220 (326)
T ss_dssp             -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EE-----
T ss_pred             CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eE-----
Confidence            9999999999999998  677889999999999999998654 222  35678999999999875432211  10     


Q ss_pred             cceeEEcCCCc--EEeeC-CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHH
Q 017124          238 VEKSYELPDGQ--VITIG-AERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIAD  313 (377)
Q Consensus       238 ~~~~~~~~~~~--~i~v~-~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~  313 (377)
                      .-....+-+|.  .+.++ .+-..+.+..+.+         +.+.|.++|.++|+++...+++ +|+||||+|+++||++
T Consensus       221 ~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~  291 (326)
T PF06723_consen  221 EVRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE  291 (326)
T ss_dssp             EEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred             EEECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence            01112233332  22333 2223333334333         8999999999999999998775 5999999999999999


Q ss_pred             HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +|++++        .+.|...++|..++..|+..+..
T Consensus       292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~  320 (326)
T PF06723_consen  292 YISEET--------GVPVRVADDPLTAVARGAGKLLE  320 (326)
T ss_dssp             HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred             HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence            999999        34666677889999999877653

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=99.98  E-value=5.3e-32  Score=254.09  Aligned_cols=305  Identities=18%  Similarity=0.275  Sum_probs=219.4

Q ss_pred             EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHHH
Q 017124           10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME   85 (377)
Q Consensus        10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~   85 (377)
                      +.||+||.++++... +..-.+..||.++...+.       +...++|++|....    ....+.+|+++|.|.||+..+
T Consensus         6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~   77 (336)
T PRK13928          6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE   77 (336)
T ss_pred             eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence            999999999999655 333334568887765332       12357899987652    345667999999999999999


Q ss_pred             HHHHHhhcccccCC-CCCCc-EEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCC
Q 017124           86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG  158 (377)
Q Consensus        86 ~~~~~~~~~~L~~~-~~~~~-vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG  158 (377)
                      ++|++++ +.+... ...+| +++++|..++..+|+ .++.+++.+|++.+.++++|+||++++|.     .+++|||+|
T Consensus        78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~-~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG  155 (336)
T PRK13928         78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKR-AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG  155 (336)
T ss_pred             HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence            9999998 444333 34566 899998887776555 55555699999999999999999999986     679999999


Q ss_pred             CCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCc
Q 017124          159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAV  238 (377)
Q Consensus       159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~  238 (377)
                      +++|+++++..|..+.  ....++||+++++.|.+++.++. .+.  .....+|++|++++.+..+....  ...... .
T Consensus       156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v~g-~  227 (336)
T PRK13928        156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEIRG-R  227 (336)
T ss_pred             CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEEec-c
Confidence            9999999999998773  34679999999999999986432 221  13456999999988764321000  000000 0


Q ss_pred             ceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017124          239 EKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSR  317 (377)
Q Consensus       239 ~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~~  317 (377)
                      .....+|.  .+.++.+++.  |+++.+      ...+.+.|.+++.+++.+++...++ +|+||||+|++||+.+++++
T Consensus       228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~  297 (336)
T PRK13928        228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE  297 (336)
T ss_pred             cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence            00001111  2334433333  444332      1237888899999998888888888 79999999999999999999


Q ss_pred             HHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      ++..        .+....+|..++..||++++.
T Consensus       298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~  322 (336)
T PRK13928        298 ETKV--------PVYIAEDPISCVALGTGKMLE  322 (336)
T ss_pred             HHCC--------CceecCCHHHHHHHHHHHHHh
Confidence            9942        333445789999999999864

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=99.95  E-value=6.9e-28  Score=212.78  Aligned_cols=312  Identities=16%  Similarity=0.193  Sum_probs=228.3

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHH
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWD   82 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~   82 (377)
                      .+.+.||+||.+|++- ..+..-....||.++......     ...-..+|++|+.+    .+.....+|+++|+|.|++
T Consensus         6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~   79 (342)
T COG1077           6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE   79 (342)
T ss_pred             cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence            3589999999999994 434444456788888765311     12346799999887    3446789999999999999


Q ss_pred             HHHHHHHHhhcccccCC--CCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEE
Q 017124           83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVL  155 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV  155 (377)
                      ..+.+++|.+.+..+-.  ...-+++++.|...+...|+.+.+.+ +..|...|+++++|.+|++++|.     +..+||
T Consensus        80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv  158 (342)
T COG1077          80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV  158 (342)
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence            99999999985444322  23445899999999999999999998 77899999999999999999985     458999


Q ss_pred             eCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccC
Q 017124          156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSS  235 (377)
Q Consensus       156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~  235 (377)
                      |||+++|.|..+..|-++  ...+..+||+.+++.+..++.+++.-+.   ...++|++|.+.+++..+...+..+... 
T Consensus       159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV-  232 (342)
T COG1077         159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV-  232 (342)
T ss_pred             EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence            999999999999998888  5667899999999999999976543333   3466999999999986532211000000 


Q ss_pred             CCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHH
Q 017124          236 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR  314 (377)
Q Consensus       236 ~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~r  314 (377)
                      .......-+|....+.-...+....|.+          ..|.+.|...+.++|+++-...+++ +++|||+|.+.||++.
T Consensus       233 ~Grdl~~GlPk~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~  302 (342)
T COG1077         233 RGRDLVTGLPKTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL  302 (342)
T ss_pred             EeeecccCCCeeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence            0000000111111111111111222222          3488888999999999999999988 9999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      +.++.        .+.++-.++|-..+-+|+....
T Consensus       303 i~~et--------~~pv~ia~~pL~~Va~G~G~~l  329 (342)
T COG1077         303 LSEET--------GVPVIIADDPLTCVAKGTGKAL  329 (342)
T ss_pred             HHhcc--------CCeEEECCChHHHHHhccchhh
Confidence            99887        4566777788777777865543

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=99.90  E-value=9e-23  Score=181.44  Aligned_cols=208  Identities=17%  Similarity=0.213  Sum_probs=160.2

Q ss_pred             eceecCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh
Q 017124           70 KYPIEHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA  146 (377)
Q Consensus        70 ~~p~~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~  146 (377)
                      ..|+.+|.|.|++..+.+++++..   +.++  ..-..+++++|..++..+|+.+.+.+ +..|++.+.++.+|+|++++
T Consensus        28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~  104 (239)
T TIGR02529        28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV  104 (239)
T ss_pred             cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence            578999999999999999999973   2232  23467999999999999998877766 88999999999999999999


Q ss_pred             cCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHH
Q 017124          147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYE  226 (377)
Q Consensus       147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~  226 (377)
                      ++....+|+|+|+++|+++.+.+|.++  .....++||+++++.+.+.+   +      .+.+.+|++|.+.+.-     
T Consensus       105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~---~------i~~~~AE~~K~~~~~~-----  168 (239)
T TIGR02529       105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAY---G------ISFEEAEEYKRGHKDE-----  168 (239)
T ss_pred             hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHh---C------CCHHHHHHHHHhcCCH-----
Confidence            888778999999999999999999888  56678999999999988666   2      2346789998875521     


Q ss_pred             HHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017124          227 QELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST  306 (377)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s  306 (377)
                      ++..                           ...+.+..         .+.+.|.+.+.+.+.       +.|+||||+|
T Consensus       169 ~~~~---------------------------~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a  205 (239)
T TIGR02529       169 EEIF---------------------------PVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGAC  205 (239)
T ss_pred             HHHH---------------------------HHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchh
Confidence            1100                           00011111         155555666654443       4799999999


Q ss_pred             CCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017124          307 MFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       307 ~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      ++||+.+++++.+.        +.+..+.+|.+++-+|+++
T Consensus       206 ~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       206 SFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             cchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence            99999999999883        2334567899999999864

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=99.86  E-value=3.5e-20  Score=167.68  Aligned_cols=243  Identities=15%  Similarity=0.151  Sum_probs=174.9

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHH
Q 017124            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM   84 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~   84 (377)
                      +..-.++||+||+.+|+=.+ +..+.     .++                 +|+         ..+.+++.|.+.|++..
T Consensus        22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a   69 (267)
T PRK15080         22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA   69 (267)
T ss_pred             CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence            44566999999999997554 32221     111                 221         23578999999999998


Q ss_pred             HHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017124           85 EKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (377)
Q Consensus        85 ~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~  161 (377)
                      .+.++++..   +.++..  -..++++.|...+...+..+.+.+ +..|++...++.+|.+++.+++...++|||||+++
T Consensus        70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt  146 (267)
T PRK15080         70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT  146 (267)
T ss_pred             HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence            888888863   234443  346788899988777777777554 88999999999999999998877778999999999


Q ss_pred             eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017124          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS  241 (377)
Q Consensus       162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                      |+++.+.+|.++  .....++||+++++.+.+.+   +.      +.+.+|.+|.+...    . ++..           
T Consensus       147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l---~i------~~~eAE~lK~~~~~----~-~~~~-----------  199 (267)
T PRK15080        147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAY---GI------SFEEAEQYKRDPKH----H-KEIF-----------  199 (267)
T ss_pred             EEEEEEECCeEE--EEecccCchHHHHHHHHHHh---CC------CHHHHHHHHhccCC----H-HHHH-----------
Confidence            999999999887  45678999999999998776   22      34668888876431    0 0000           


Q ss_pred             EEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017124          242 YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITA  321 (377)
Q Consensus       242 ~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~  321 (377)
                                      ...+.+++.         +.+.|.+.+.+.       -.+.|+||||+|++||+.+.+++.+..
T Consensus       200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~  247 (267)
T PRK15080        200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL  247 (267)
T ss_pred             ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence                            000111111         444455555443       335899999999999999999999832


Q ss_pred             cCCCCceEEEECCCCCccccchhhhhhh
Q 017124          322 LAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                              .+..+++|.+++-+|+++|+
T Consensus       248 --------~v~~~~~P~~~~a~Gaa~~~  267 (267)
T PRK15080        248 --------PVHKPQHPLFVTPLGIALSC  267 (267)
T ss_pred             --------CcccCCCchHHHHHHHHhhC
Confidence                    23346788999999998874

>CHL00094 dnaK heat shock protein 70

Probab=99.82  E-value=9e-20  Score=183.92  Aligned_cols=297  Identities=18%  Similarity=0.215  Sum_probs=179.7

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceeec--
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--   71 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--   71 (377)
                      ..|.||+||+++++++..+..|.        ..+||+++...         ..+.++|+.|...      .....+++  
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli   73 (621)
T CHL00094          3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI   73 (621)
T ss_pred             ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence            58999999999999998666554        23445544322         1234566655421      00011111  


Q ss_pred             --------------ee----------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH
Q 017124           72 --------------PI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~  118 (377)
                                    |+                ....+...+....+++++..   ..++.  .-..+|+++|..++..+|
T Consensus        74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR  151 (621)
T CHL00094         74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR  151 (621)
T ss_pred             CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence                          11                11112223444555555532   22332  235699999999999999


Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeec---CcceEEEcccHHHHHHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDA  190 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~---~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.+.+ +.+|++.+.++++|+||+++++.     .+.+|+|+|+++++|+.+..+...   ..+....++||+++++.
T Consensus       152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~  230 (621)
T CHL00094        152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK  230 (621)
T ss_pred             HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence            9888776 88999999999999999999874     468999999999999988544221   22233468999999999


Q ss_pred             HHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC-cEEe--
Q 017124          191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG-QVIT--  251 (377)
Q Consensus       191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~i~--  251 (377)
                      |.+++.++     +.++....     -...+|.+|..++...                ...+.+|      ++ ..+.  
T Consensus       231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~  294 (621)
T CHL00094        231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT  294 (621)
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence            99877543     22222111     1234566666655211                1111111      01 1222  


Q ss_pred             eCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEE
Q 017124          252 IGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIK  330 (377)
Q Consensus       252 v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~  330 (377)
                      +..++|. ..+.++..         +...|.+++.+.  .+...-++.|+|+||+|++|++++.+++.+..        +
T Consensus       295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~  355 (621)
T CHL00094        295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K  355 (621)
T ss_pred             EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence            2222222 11112111         334444555443  23344568999999999999999998877632        2


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017124          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++..||+++|..
T Consensus       356 ~~~~~~pdeava~GAA~~aa~  376 (621)
T CHL00094        356 PNQSVNPDEVVAIGAAVQAGV  376 (621)
T ss_pred             cCcCCCchhHHHhhhHHHHHH
Confidence            334457889999999999875

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.82  E-value=4.3e-20  Score=185.15  Aligned_cols=300  Identities=21%  Similarity=0.218  Sum_probs=180.8

Q ss_pred             CEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceee----
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK----   70 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~----   70 (377)
                      +|.||+||+++.+++..+..|.        ..+||+++...+         ...+||..|...      .....++    
T Consensus         1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG   71 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG   71 (599)
T ss_pred             CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence            4789999999999988665444        245666654322         235677666432      0000111    


Q ss_pred             -----------cee--------------cCCccCCHHHHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHh
Q 017124           71 -----------YPI--------------EHGIVSNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMT  122 (377)
Q Consensus        71 -----------~p~--------------~~g~i~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~  122 (377)
                                 +|+              ..+.+...+....+++++.   .+.++..  -..+|+++|..++..+|+.+.
T Consensus        72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~  149 (599)
T TIGR01991        72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATK  149 (599)
T ss_pred             CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHH
Confidence                       122              1222222334444555443   1334332  357999999999999999888


Q ss_pred             hhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHH
Q 017124          123 QIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI  194 (377)
Q Consensus       123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~  194 (377)
                      +.+ +.+|++.+.++++|+||+++++.     .+.+|+|+|+++++|+.+.  +|.. +..+.....+||.++++.|.++
T Consensus       150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~  228 (599)
T TIGR01991       150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW  228 (599)
T ss_pred             HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence            776 88999999999999999998863     4689999999999998774  3422 1122234589999999999999


Q ss_pred             HHHc-CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCcc
Q 017124          195 LTER-GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSL  268 (377)
Q Consensus       195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~  268 (377)
                      +.++ +........     ...++..|+.++.-              ......+.. +|..+.+.-.|..+ |.++.|- 
T Consensus       229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~ef-e~l~~~l-  291 (599)
T TIGR01991       229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEF-EALIQPL-  291 (599)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHH-HHHHHHH-
Confidence            8654 332211111     12344445443321              111122222 23333322222222 2222220 


Q ss_pred             CCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017124          269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       269 ~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                          ...+.+.|.+++....  +...-++.|+|+||+|++|++++.+++.+..        .+....+|+.++..||+++
T Consensus       292 ----l~~i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~  357 (599)
T TIGR01991       292 ----VQKTLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQ  357 (599)
T ss_pred             ----HHHHHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHH
Confidence                0114445555555432  2334568899999999999999999877632        1234568899999999999


Q ss_pred             hcc
Q 017124          349 ASL  351 (377)
Q Consensus       349 a~l  351 (377)
                      |..
T Consensus       358 a~~  360 (599)
T TIGR01991       358 ADL  360 (599)
T ss_pred             HHH
Confidence            865

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.82  E-value=1.1e-19  Score=183.81  Aligned_cols=216  Identities=17%  Similarity=0.238  Sum_probs=142.4

Q ss_pred             CCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 017124          102 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      -..+|+++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.  +|.. +
T Consensus       174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v  252 (663)
T PTZ00400        174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV  252 (663)
T ss_pred             CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence            357999999999999999888776 88999999999999999999875     4789999999999998774  5533 2


Q ss_pred             CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ..+.....+||.++++.|.+++.++     +.++....     -...+|..|+.++.-              ......+.
T Consensus       253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~--------------~~~~i~i~  318 (663)
T PTZ00400        253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSK--------------TQTEINLP  318 (663)
T ss_pred             EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCC--------------CceEEEEE
Confidence            2233356899999999999888643     22221110     022355556555421              00111111


Q ss_pred             --cCC--C-c--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017124          244 --LPD--G-Q--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM  315 (377)
Q Consensus       244 --~~~--~-~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl  315 (377)
                        ..|  | .  .+.++.+.|. ..+.+|..         +.+.|.+++.+..  +.+.-++.|+|+||+|++|++++.|
T Consensus       319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l  387 (663)
T PTZ00400        319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV  387 (663)
T ss_pred             eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence              111  1 1  2233333332 22223222         4555566665442  3344578999999999999999998


Q ss_pred             HHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          316 SREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++.+..        .+....+|+.++..||+++|..
T Consensus       388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~  415 (663)
T PTZ00400        388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV  415 (663)
T ss_pred             HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence            877632        2234457889999999999865

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.82  E-value=8.3e-20  Score=184.66  Aligned_cols=213  Identities=17%  Similarity=0.233  Sum_probs=139.4

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCe--e-cC
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LP  174 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~--~-~~  174 (377)
                      ..+|+++|..++..+|+.+.+.+ +.+|++.+.++++|+||+++++.     .+.+|+|+|+++++++.+.-+.  . +.
T Consensus       134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl  212 (627)
T PRK00290        134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL  212 (627)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence            56999999999999999887776 88999999999999999998863     5689999999999998774432  1 22


Q ss_pred             cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017124          175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL  244 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  244 (377)
                      .+....++||.++++.|.+++.++     +.++....     -...++..|+.++.-                ....+.+
T Consensus       213 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i  276 (627)
T PRK00290        213 STNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINL  276 (627)
T ss_pred             EecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEE
Confidence            222345899999999999887542     22222111     022355555554421                1111111


Q ss_pred             C----C--C-cE--EeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017124          245 P----D--G-QV--ITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       245 ~----~--~-~~--i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r  314 (377)
                      +    |  | ..  +.+..+.|. ..+.++..         +.+.|.+++....  +...-++.|+|+||+|++|.++++
T Consensus       277 ~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~id~ViLvGGssriP~v~~~  345 (627)
T PRK00290        277 PFITADASGPKHLEIKLTRAKFEELTEDLVER---------TIEPCKQALKDAG--LSVSDIDEVILVGGSTRMPAVQEL  345 (627)
T ss_pred             eecccCCCCCeEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCcEEEEECCcCCChHHHHH
Confidence            1    1  1 12  233333322 11222222         4555556665443  223446889999999999999999


Q ss_pred             HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      |++.+..        .+....+|+.++..||+++|..
T Consensus       346 l~~~fg~--------~~~~~~npdeava~GAa~~aa~  374 (627)
T PRK00290        346 VKEFFGK--------EPNKGVNPDEVVAIGAAIQGGV  374 (627)
T ss_pred             HHHHhCC--------CCCcCcCChHHHHHhHHHHHHH
Confidence            9877632        2334557889999999999864

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.82  E-value=2.1e-19  Score=182.03  Aligned_cols=297  Identities=16%  Similarity=0.199  Sum_probs=180.0

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceeec--
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--   71 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--   71 (377)
                      .+|.||+||+++++++..+..|.        ..+||+++...+         .+.++|+.|...      +....+++  
T Consensus        40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krli  110 (673)
T PLN03184         40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFI  110 (673)
T ss_pred             CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCC---------CCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence            57999999999999998766554        234555443221         234566655431      00011111  


Q ss_pred             --------------ee----------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH
Q 017124           72 --------------PI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~  118 (377)
                                    |+                ....+...+....+++++..   +.++.  .-..+||++|.+++..+|
T Consensus       111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR  188 (673)
T PLN03184        111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQR  188 (673)
T ss_pred             CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence                          11                11122223444555555532   23332  235799999999999999


Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCee---cCcceEEEcccHHHHHHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.+.+ +..|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.-+..   +..+....++||.++++.
T Consensus       189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~  267 (673)
T PLN03184        189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR  267 (673)
T ss_pred             HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence            9887766 88999999999999999998864     46899999999999987743321   122223468999999999


Q ss_pred             HHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC-cEEe--
Q 017124          191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG-QVIT--  251 (377)
Q Consensus       191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~i~--  251 (377)
                      |.+++.++     +.++....     -...+|+.|..++...                ...+.++      ++ ..+.  
T Consensus       268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~  331 (673)
T PLN03184        268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT  331 (673)
T ss_pred             HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence            99887643     22221111     0234555665554311                1111111      11 2232  


Q ss_pred             eCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEE
Q 017124          252 IGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIK  330 (377)
Q Consensus       252 v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~  330 (377)
                      +..+.|. ..+.++..         +.+.|.+++.....  ...-++.|+|+||+|++|.++++|++.+..        .
T Consensus       332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~  392 (673)
T PLN03184        332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------D  392 (673)
T ss_pred             ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence            3333322 11222222         44555556654432  234458999999999999999998877632        1


Q ss_pred             EECCCCCccccchhhhhhhcc
Q 017124          331 VVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       331 v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +....+|+.++..||+++|..
T Consensus       393 ~~~~~npdeaVA~GAAi~aa~  413 (673)
T PLN03184        393 PNVTVNPDEVVALGAAVQAGV  413 (673)
T ss_pred             cccccCcchHHHHHHHHHHHH
Confidence            223457789999999999864

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.81  E-value=1.4e-19  Score=182.28  Aligned_cols=213  Identities=17%  Similarity=0.264  Sum_probs=138.9

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      ..+++++|..++..+|+.+.+.+ +.+|++.+.++++|+||+++++.      .+.+|+|+|+++++++.+.  +|.. +
T Consensus       131 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v  209 (595)
T TIGR02350       131 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV  209 (595)
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence            56999999999999999888876 88999999999999999998763      4679999999999998774  2322 2


Q ss_pred             CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ..+.....+||.++++.|.+++.++     +.++....     -...+|..|..++..                ....+.
T Consensus       210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~  273 (595)
T TIGR02350       210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEIN  273 (595)
T ss_pred             EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence            2222345799999999999887532     22222110     023455566555421                111111


Q ss_pred             cC----C--C-c--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017124          244 LP----D--G-Q--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD  313 (377)
Q Consensus       244 ~~----~--~-~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~  313 (377)
                      ++    +  | .  .+.+..+.|. ..+.++..         +.+.|.+++.+..  +...-++.|+|+||+|++|.+++
T Consensus       274 i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~  342 (595)
T TIGR02350       274 LPFITADASGPKHLEMTLTRAKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQE  342 (595)
T ss_pred             eeecccCCCCCeeEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHH
Confidence            11    1  1 1  2233333322 11222222         4455555555442  23345688999999999999999


Q ss_pred             HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+++.+..        ++....+|+.++..||+++|..
T Consensus       343 ~i~~~f~~--------~~~~~~~pdeava~GAa~~aa~  372 (595)
T TIGR02350       343 LVKDFFGK--------EPNKSVNPDEVVAIGAAIQGGV  372 (595)
T ss_pred             HHHHHhCC--------cccCCcCcHHHHHHHHHHHHHH
Confidence            98876631        3445567889999999999864

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.81  E-value=2.9e-19  Score=179.69  Aligned_cols=217  Identities=17%  Similarity=0.209  Sum_probs=141.1

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP  174 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~  174 (377)
                      ..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.  +|.. +.
T Consensus       161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~  239 (657)
T PTZ00186        161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK  239 (657)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence            57999999999999999887776 88999999999999999999874     4689999999999998875  6643 22


Q ss_pred             cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017124          175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL  244 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  244 (377)
                      .+.....+||.++++.|.+++.++     +.++....     -...+|+.|..++....            ......+..
T Consensus       240 at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i~  307 (657)
T PTZ00186        240 ATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFIT  307 (657)
T ss_pred             EecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeeec
Confidence            222356899999999999887642     22221110     12345666665543210            000111111


Q ss_pred             C--CC---cEEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHH
Q 017124          245 P--DG---QVITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSRE  318 (377)
Q Consensus       245 ~--~~---~~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~e  318 (377)
                      .  ++   ..+.++.+.|. ..+.++..         +.+.+.+++....  +...-++.|+|+||+|+||.+++.+++.
T Consensus       308 ~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~~  376 (657)
T PTZ00186        308 ANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKKF  376 (657)
T ss_pred             cCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHHH
Confidence            1  11   12333333332 22223222         3444455554332  3344567899999999999999988877


Q ss_pred             HHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          319 ITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +..        ......+|+.++..||+++|..
T Consensus       377 fg~--------~~~~~~nPdeaVA~GAAi~a~~  401 (657)
T PTZ00186        377 FQK--------DPFRGVNPDEAVALGAATLGGV  401 (657)
T ss_pred             hCC--------CccccCCCchHHHHhHHHHHHH
Confidence            632        1123457889999999999874

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.81  E-value=4.1e-19  Score=177.15  Aligned_cols=205  Identities=17%  Similarity=0.223  Sum_probs=140.1

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP  174 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~  174 (377)
                      ..+|+++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|.     .+.+|+|+|+++++|+.+.  +|.. +.
T Consensus       142 ~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~  220 (595)
T PRK01433        142 TKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI  220 (595)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence            57999999999999999888776 88999999999999999999874     3579999999999998774  4422 22


Q ss_pred             cceEEEcccHHHHHHHHHHHHHHcCCCCcc-hhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeC
Q 017124          175 HAILRLDLAGRDLTDALMKILTERGYSFTT-TAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIG  253 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~-~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  253 (377)
                      .+.....+||.++++.|.+++.++. .... ....+.++..|+.++.-.                  .+..   ..+.++
T Consensus       221 at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~it  278 (595)
T PRK01433        221 ATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISIN  278 (595)
T ss_pred             EEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEc
Confidence            2223457999999999999987542 1111 112234566665544210                  0111   134444


Q ss_pred             Ccccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEE
Q 017124          254 AERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVV  332 (377)
Q Consensus       254 ~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~  332 (377)
                      .+.|. ..+.+|+.         +.+.|.+++....    ..-++.|+|+||+|++|.+++.|++.+.        .++.
T Consensus       279 r~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~--------~~~~  337 (595)
T PRK01433        279 KQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFK--------VDIL  337 (595)
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhC--------CCce
Confidence            43332 22223322         4555555555443    2236889999999999999888887662        1334


Q ss_pred             CCCCCccccchhhhhhhcc
Q 017124          333 APPERKYSVWIGGSILASL  351 (377)
Q Consensus       333 ~~~~~~~~~w~Gasi~a~l  351 (377)
                      ...+|+.++..||+++|..
T Consensus       338 ~~~npdeaVA~GAAi~a~~  356 (595)
T PRK01433        338 SDIDPDKAVVWGAALQAEN  356 (595)
T ss_pred             ecCCchHHHHHHHHHHHHH
Confidence            4568899999999999875

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.80  E-value=3.6e-19  Score=180.03  Aligned_cols=214  Identities=17%  Similarity=0.255  Sum_probs=138.5

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      ..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+|||+++|.      .+.+|+|+|+++++|+.+.  +|.. +
T Consensus       134 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V  212 (653)
T PRK13411        134 TQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV  212 (653)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence            56999999999999999888776 88999999999999999998864      3579999999999998763  2322 2


Q ss_pred             CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ..+.....+||.++++.|.+++.++     +.++....     -...+|+.|+.++.-                ....+.
T Consensus       213 ~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~----------------~~~~i~  276 (653)
T PRK13411        213 KATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSM----------------LTTSIN  276 (653)
T ss_pred             EEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEE
Confidence            2222345799999999999887542     22222111     023345555544421                111111


Q ss_pred             c----CC---Cc--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017124          244 L----PD---GQ--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD  313 (377)
Q Consensus       244 ~----~~---~~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~  313 (377)
                      +    .+   +.  .+.+..+.|. ..+.++..         +.+.|.+++.+.  .+...-++.|+|+||+|++|.+++
T Consensus       277 i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~id~ViLvGGssriP~v~~  345 (653)
T PRK13411        277 LPFITADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDA--GLKPEDIDRVILVGGSTRIPAVQE  345 (653)
T ss_pred             EeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCCHHHCcEEEEECCCCCcchHHH
Confidence            1    11   11  2233333322 11222222         445555555544  334455789999999999999999


Q ss_pred             HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .|++.+...       .+....+|+.++..||+++|..
T Consensus       346 ~l~~~f~~~-------~~~~~~npdeaVA~GAAi~aa~  376 (653)
T PRK13411        346 AIQKFFGGK-------QPDRSVNPDEAVALGAAIQAGV  376 (653)
T ss_pred             HHHHHcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence            988766321       2334457889999999999864

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.80  E-value=3.5e-19  Score=179.06  Aligned_cols=296  Identities=19%  Similarity=0.171  Sum_probs=176.2

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceee--
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK--   70 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~--   70 (377)
                      ..+|.||+||+++.+++..+..|.        ..+||+++...          +...+|.+|...      .....++  
T Consensus        19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krl   88 (616)
T PRK05183         19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRF   88 (616)
T ss_pred             CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHH
Confidence            357999999999999998655553        23455554322          225677665431      0000000  


Q ss_pred             --------------cee--------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHH
Q 017124           71 --------------YPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANRE  119 (377)
Q Consensus        71 --------------~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~  119 (377)
                                    +|+              ..+.+...+....+++++..   +.++.  .-..+|+++|.+++..+|+
T Consensus        89 iG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~  166 (616)
T PRK05183         89 MGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQ  166 (616)
T ss_pred             hCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHH
Confidence                          111              11222222333445555431   23432  2357999999999999999


Q ss_pred             HHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHH
Q 017124          120 KMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       120 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l  191 (377)
                      .+.+.+ +.+|++.+.++++|+||+++++.     .+.+|+|+|+++++|+.+.  +|.. +..+.....+||.++++.|
T Consensus       167 a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l  245 (616)
T PRK05183        167 ATKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLL  245 (616)
T ss_pred             HHHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHH
Confidence            887776 88999999999999999988763     3579999999999998774  3322 2222334689999999999


Q ss_pred             HHHHHHc-CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCcccc-ccccCC
Q 017124          192 MKILTER-GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFR-CPEVLF  264 (377)
Q Consensus       192 ~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~-~~e~lf  264 (377)
                      .+++.++ +........     ...++..|+.++.-                ....+.+++.. -.++.+.|. ..+.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~  308 (616)
T PRK05183        246 ADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLV  308 (616)
T ss_pred             HHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHH
Confidence            9988654 222211100     12344444443321                11222222110 012222221 112222


Q ss_pred             CCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchh
Q 017124          265 QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIG  344 (377)
Q Consensus       265 ~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~G  344 (377)
                      ..         +.+.|.+++.+..  +...-++.|+|+||+|++|.+++.|++.+..        .+....+|+.++..|
T Consensus       309 ~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~G  369 (616)
T PRK05183        309 KR---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIG  369 (616)
T ss_pred             HH---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHH
Confidence            21         4444455554432  2233467899999999999999998876632        123346788999999


Q ss_pred             hhhhhcc
Q 017124          345 GSILASL  351 (377)
Q Consensus       345 asi~a~l  351 (377)
                      |+++|..
T Consensus       370 AAi~a~~  376 (616)
T PRK05183        370 AAIQADI  376 (616)
T ss_pred             HHHHHHH
Confidence            9999874

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.80  E-value=3.6e-19  Score=179.77  Aligned_cols=213  Identities=18%  Similarity=0.233  Sum_probs=137.2

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP  174 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~  174 (377)
                      ..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+|||+++|.     .+.+|+|+|+++++|+.+.  +|.. +.
T Consensus       136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~  214 (668)
T PRK13410        136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK  214 (668)
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence            46999999999999999887776 88999999999999999999874     4689999999999998774  3322 22


Q ss_pred             cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017124          175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL  244 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  244 (377)
                      .+.....+||.++++.|.+++.++     +.++....     -...+++.|..++..                ....+.+
T Consensus       215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i  278 (668)
T PRK13410        215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISL  278 (668)
T ss_pred             EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEE
Confidence            223345899999999999887542     22221110     012345555554321                1111211


Q ss_pred             C------CC-cEE--eeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017124          245 P------DG-QVI--TIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       245 ~------~~-~~i--~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r  314 (377)
                      +      ++ ..+  .+..+.|. ..+.++..         +.+.|.+++...  .+.+.-++.|+|+||+|++|.+++.
T Consensus       279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~  347 (668)
T PRK13410        279 PFITATEDGPKHIETRLDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQL  347 (668)
T ss_pred             eeeecCCCCCeeEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHH
Confidence            1      11 122  23322222 11222222         444455555432  2334566789999999999988888


Q ss_pred             HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +++.+..        .+....+|+.++..||+++|..
T Consensus       348 l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~  376 (668)
T PRK13410        348 VRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI  376 (668)
T ss_pred             HHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence            8765521        2234457789999999999875

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.78  E-value=2.7e-18  Score=173.94  Aligned_cols=214  Identities=16%  Similarity=0.225  Sum_probs=140.9

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--CCee-
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA-  172 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~-  172 (377)
                      ..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||+++++.       .+.+|+|+|+++++|+.+.  +|.. 
T Consensus       141 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~  219 (653)
T PTZ00009        141 KDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE  219 (653)
T ss_pred             ceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence            57999999999999999888776 88999999999999999998863       4689999999999998764  4432 


Q ss_pred             cCcceEEEcccHHHHHHHHHHHHHHc------CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017124          173 LPHAILRLDLAGRDLTDALMKILTER------GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS  241 (377)
Q Consensus       173 ~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~  241 (377)
                      +..+.....+||.++++.|.+++.++      +.++....     -...+|+.|+.++..                ....
T Consensus       220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~~  283 (653)
T PTZ00009        220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQAT  283 (653)
T ss_pred             EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceEE
Confidence            22222245899999999999888642      12221111     023355555544421                1222


Q ss_pred             EEc---CCCcEE--eeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017124          242 YEL---PDGQVI--TIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM  315 (377)
Q Consensus       242 ~~~---~~~~~i--~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl  315 (377)
                      +.+   .++..+  .+..+.|. ..+.+|..         +.+.|.+++.....+  ..-++.|+|+||+|++|.+++.|
T Consensus       284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i  352 (653)
T PTZ00009        284 IEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLI  352 (653)
T ss_pred             EEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHH
Confidence            222   233333  33333332 22223322         455566666655432  34568899999999999999888


Q ss_pred             HHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          316 SREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++.+...       ++....+|+.++..||+++|..
T Consensus       353 ~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~  381 (653)
T PTZ00009        353 KDFFNGK-------EPCKSINPDEAVAYGAAVQAAI  381 (653)
T ss_pred             HHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence            8766321       2334457889999999999864

>PRK11678 putative chaperone; Provisional

Probab=99.70  E-value=1.5e-16  Score=153.48  Aligned_cols=180  Identities=18%  Similarity=0.204  Sum_probs=111.7

Q ss_pred             CEEEeCCCCceEEeeeCCCCC--------CCCCCcceeecCCCCc-------------------------------cccC
Q 017124            9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM   49 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P--------~~~~p~~~~~~~~~~~-------------------------------~~~~   49 (377)
                      .+.||+||+++-+++..+..|        ...+||.++.+.....                               ....
T Consensus         2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T PRK11678          2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV   81 (450)
T ss_pred             eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence            489999999999999965433        3466777655321000                               0011


Q ss_pred             CCccceecccccccc----cc----ceeec-----eecCCccCCHHH-HHHHHHHhh---cccccCCCCCCcEEEEeCCC
Q 017124           50 GQKDAYVGDEAQSKR----GI----LTLKY-----PIEHGIVSNWDD-MEKIWHHTF---YNELRVAPEEHPVLLTEAPL  112 (377)
Q Consensus        50 ~~~~~~vg~~~~~~~----~~----~~~~~-----p~~~g~i~d~~~-~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~  112 (377)
                      ......+|.+|.+..    ..    ..+++     ++..+.+..++. +..+|+++-   ...++.  .-..+||+.|..
T Consensus        82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~--~v~~~VItvPa~  159 (450)
T PRK11678         82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQA--AITQAVIGRPVN  159 (450)
T ss_pred             cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCc
Confidence            234567888875431    11    12222     233333333332 234444432   122332  235799999998


Q ss_pred             CC-----hHHHHH--HhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 017124          113 NP-----KANREK--MTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG----------  170 (377)
Q Consensus       113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g----------  170 (377)
                      ++     ..+|+.  .+.-+.+..|++.+.++++|+||+++++.     .+.+|+|+|+++++++.|.=+          
T Consensus       160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~  239 (450)
T PRK11678        160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS  239 (450)
T ss_pred             cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence            76     555543  24445588999999999999999999873     568999999999999887421          


Q ss_pred             -eecCcceEEEcccHHHHHHHHH
Q 017124          171 -YALPHAILRLDLAGRDLTDALM  192 (377)
Q Consensus       171 -~~~~~~~~~~~~GG~~i~~~l~  192 (377)
                       .++.++  -..+||+++++.|.
T Consensus       240 ~~vla~~--G~~lGG~DfD~~L~  260 (450)
T PRK11678        240 ASLLGHS--GQRIGGNDLDIALA  260 (450)
T ss_pred             eeEEecC--CCCCChHHHHHHHH
Confidence             122111  13799999999996

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.7e-16  Score=153.90  Aligned_cols=311  Identities=18%  Similarity=0.183  Sum_probs=179.7

Q ss_pred             CCCCEEEeCCCCceEEeeeCCC-CCCCCCCcceeecCCCCccccCCCccceeccccccc------cccceeeceecCC--
Q 017124            6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG--   76 (377)
Q Consensus         6 ~~~~vviD~Gs~~~k~G~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g--   76 (377)
                      -..+|.||+||+++.+++.... .|. ++++..+.+..++...-....+.++|..+...      ...+.+++.+..+  
T Consensus         4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~   82 (579)
T COG0443           4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN   82 (579)
T ss_pred             CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence            3467999999999999998765 444 33444333222222211112257788877553      1234455555432  


Q ss_pred             ----------ccCCHH-HHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhh
Q 017124           77 ----------IVSNWD-DMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL  142 (377)
Q Consensus        77 ----------~i~d~~-~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~  142 (377)
                                ..+..+ ....+++++-   ...|+.  .-..+++++|.+++..+|+.+.+.+ +..|++.+.++++|+|
T Consensus        83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~--~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA  159 (579)
T COG0443          83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGE--KVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA  159 (579)
T ss_pred             CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCC--CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence                      112222 2223333321   123332  2367999999999999988777766 8899999999999999


Q ss_pred             hhhhcCC-----ceEEEEeCCCCceEEEEeeC--Ce-ecCcceEEEcccHHHHHHHHHHHHHHc----C-CCCcchhH--
Q 017124          143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GY-ALPHAILRLDLAGRDLTDALMKILTER----G-YSFTTTAE--  207 (377)
Q Consensus       143 a~~~~g~-----~~~lVVDiG~~~t~v~~v~~--g~-~~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~~--  207 (377)
                      |++++|.     ..-+|+|+|+++++++.|.=  |. .+........+||++++..|..++..+    + .++.....  
T Consensus       160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~  239 (579)
T COG0443         160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL  239 (579)
T ss_pred             HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence            9999985     47899999999999998743  32 233344566899999999999877643    2 23322111  


Q ss_pred             ---HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEee--CCccccccccCCCCccCCCCCCChHHHHHH
Q 017124          208 ---REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSLIGMEAAGIHETTYN  282 (377)
Q Consensus       208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~  282 (377)
                         .+.++..|..++....              ....+..-++. +.+  .-.|-.. |.+..+.     ...+.+.+.+
T Consensus       240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l~~dl-----l~r~~~~~~~  298 (579)
T COG0443         240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EELILDL-----LERTIEPVEQ  298 (579)
T ss_pred             HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHHHHHH-----HHHHHHHHHH
Confidence               1344455554443211              11111111111 111  1111111 1121110     0002222222


Q ss_pred             HHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       283 ~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ++.  +..+...-++-|+++||.++||-+.+.+.+.+.    .    ......+|+.++..||++.|..
T Consensus       299 al~--~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~  357 (579)
T COG0443         299 ALK--DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV  357 (579)
T ss_pred             HHH--HcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence            332  233344556779999999999966666665553    1    3445567889999999998865

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.68  E-value=5e-17  Score=164.91  Aligned_cols=218  Identities=20%  Similarity=0.262  Sum_probs=134.4

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L  173 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~  173 (377)
                      ..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++.      .+-+|+|+|+++++++.+.  +|.. +
T Consensus       136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v  214 (602)
T PF00012_consen  136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV  214 (602)
T ss_dssp             EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred             ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence            46999999999999999888887 88999999999999999987753      4779999999999888774  4533 2


Q ss_pred             CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      ........+||.++++.|.+++.++     +.+.....     -...++..|+.++.-              ......+.
T Consensus       215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~  280 (602)
T PF00012_consen  215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS  280 (602)
T ss_dssp             EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred             cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence            2233456899999999999988642     22222110     022344445444321              01112221


Q ss_pred             ----cCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017124          244 ----LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI  319 (377)
Q Consensus       244 ----~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL  319 (377)
                          ..++..+.+.-.|-.+. .++.|-     ...+.+.|.+++.....  ...-++.|+|+||+|++|.+.+.|++.+
T Consensus       281 ~~~~~~~~~~~~~~itr~~fe-~l~~~~-----~~~~~~~i~~~l~~~~~--~~~~i~~V~lvGG~sr~p~v~~~l~~~f  352 (602)
T PF00012_consen  281 IESLYDDGEDFSITITREEFE-ELCEPL-----LERIIEPIEKALKDAGL--KKEDIDSVLLVGGSSRIPYVQEALKELF  352 (602)
T ss_dssp             EEEEETTTEEEEEEEEHHHHH-HHTHHH-----HHHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHT
T ss_pred             cccccccccccccccccceec-cccccc-----ccccccccccccccccc--cccccceeEEecCcccchhhhhhhhhcc
Confidence                12244333333332221 122220     01155566666654432  2344578999999999998777776655


Q ss_pred             HhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          320 TALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .    .    .+....+|..++..||+++|..
T Consensus       353 ~----~----~~~~~~~p~~aVA~GAa~~a~~  376 (602)
T PF00012_consen  353 G----K----KISKSVNPDEAVARGAALYAAI  376 (602)
T ss_dssp             T----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred             c----c----ccccccccccccccccccchhh
Confidence            3    1    3445567889999999999864

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>TIGR01174 ftsA cell division protein FtsA

Probab=99.63  E-value=8.2e-15  Score=139.60  Aligned_cols=181  Identities=16%  Similarity=0.235  Sum_probs=118.0

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      ++...+.+.+.+ +.+|+..+.++.+|+|+++++..     ...+|||+|+++|+++.+.+|.++  .....++||++++
T Consensus       156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it  232 (371)
T TIGR01174       156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT  232 (371)
T ss_pred             EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence            455566666655 88999999999999999987642     357999999999999999999877  4567899999999


Q ss_pred             HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC---CcEEeeCCcccc-ccccCC
Q 017124          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD---GQVITIGAERFR-CPEVLF  264 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~~~~~~-~~e~lf  264 (377)
                      +.+.+.+.         ...+.+|++|.+++....+..          .....+.++.   +....++...+. ..+..+
T Consensus       233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~  293 (371)
T TIGR01174       233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE----------GPDENIEIPSVGERPPRSLSRKELAEIIEARA  293 (371)
T ss_pred             HHHHHHhC---------CCHHHHHHHHHHeeEecccCC----------CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence            99987651         235779999999987532210          0011122211   111222111111 111111


Q ss_pred             CCccCCCCCCChHHHHH-HHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017124          265 QPSLIGMEAAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP  334 (377)
Q Consensus       265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~  334 (377)
                      +         .+.+.|. +.+.+.+..   .-+.+ |+||||+|++||+.+++.+.+..      ++++..|
T Consensus       294 ~---------ei~~~i~~~~L~~~~~~---~~i~~gIvLtGG~S~ipgi~~~l~~~~~~------~vr~~~P  347 (371)
T TIGR01174       294 E---------EILEIVKQKELRKSGFK---EELNGGIVLTGGGAQLEGIVELAEKVFDN------PVRIGLP  347 (371)
T ss_pred             H---------HHHHHHHHHHHHhcCCc---ccCCCEEEEeChHHcccCHHHHHHHHhCC------CeEEECC
Confidence            1         1444554 555544332   22344 99999999999999999998843      4555544

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=99.62  E-value=4e-14  Score=136.64  Aligned_cols=202  Identities=18%  Similarity=0.209  Sum_probs=134.2

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      +....+.+.+ +++..|+....++.+|+|+++++..     ...+|||+|+++|+++.+.+|.++  .....++||++++
T Consensus       164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it  240 (420)
T PRK09472        164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT  240 (420)
T ss_pred             chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence            3444555666 5589999999999999999998753     358999999999999999999888  7778999999999


Q ss_pred             HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC--CC-cEEeeCCccccccccCCC
Q 017124          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP--DG-QVITIGAERFRCPEVLFQ  265 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~v~~~~~~~~e~lf~  265 (377)
                      +.+...+.         ...+.+|++|.+++....+...          ....+.++  ++ ....++  +....+++..
T Consensus       241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~----------~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~  299 (420)
T PRK09472        241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIVG----------KDESVEVPSVGGRPPRSLQ--RQTLAEVIEP  299 (420)
T ss_pred             HHHHHHhC---------cCHHHHHHHHHhcceeccccCC----------CCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence            99987662         2346799999988865322100          01112221  11 101111  1111111111


Q ss_pred             CccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC------
Q 017124          266 PSLIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP------  334 (377)
Q Consensus       266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~------  334 (377)
                            ....|.+.|.+++..++..++.     .+.+.|+||||+|+|||+.+.+++.+..      ++++..|      
T Consensus       300 ------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~  367 (420)
T PRK09472        300 ------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL  367 (420)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence                  0111444555666555544443     3556799999999999999999988842      3455433      


Q ss_pred             ----CCCccccchhhhhhhcc
Q 017124          335 ----PERKYSVWIGGSILASL  351 (377)
Q Consensus       335 ----~~~~~~~w~Gasi~a~l  351 (377)
                          .+|.|++-.|...|+.-
T Consensus       368 ~~~~~~P~~ata~Gl~~~~~~  388 (420)
T PRK09472        368 TDYAQEPYYSTAVGLLHYGKE  388 (420)
T ss_pred             hhhcCCcHHHHHHHHHHHhhh
Confidence                36789999999888763

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=99.58  E-value=3.8e-14  Score=133.74  Aligned_cols=201  Identities=19%  Similarity=0.267  Sum_probs=136.8

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      +....+.|.+++ |+.|.....++-+|+|++.+.-.     -++++||+|+++|+|+.+.+|.+.  +...+|+||+++|
T Consensus       163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT  239 (418)
T COG0849         163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT  239 (418)
T ss_pred             chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence            556667777776 99999999999999999987643     479999999999999999999998  6777899999999


Q ss_pred             HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC--CcEEeeCCccccccccCCCC
Q 017124          189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD--GQVITIGAERFRCPEVLFQP  266 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~~~~~~e~lf~p  266 (377)
                      +.+...|         ..+.+.+|++|.+++....+..          .....++.|.  +.. ...-.+....+++-  
T Consensus       240 ~DIa~~l---------~t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~--  297 (418)
T COG0849         240 KDIAKGL---------KTPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIE--  297 (418)
T ss_pred             HHHHHHh---------CCCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHH--
Confidence            9999888         2356779999999987643321          0111222211  111 00011111111110  


Q ss_pred             ccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC----------CC
Q 017124          267 SLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP----------PE  336 (377)
Q Consensus       267 ~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~----------~~  336 (377)
                          .....+.+++...|++.-..  ..+...|+||||++++||+.+-.+.-+..      ++++..|          .+
T Consensus       298 ----aR~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~  365 (418)
T COG0849         298 ----ARVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN  365 (418)
T ss_pred             ----hhHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence                00111334555555544322  56668899999999999999888766643      3444433          35


Q ss_pred             Cccccchhhhhhhcc
Q 017124          337 RKYSVWIGGSILASL  351 (377)
Q Consensus       337 ~~~~~w~Gasi~a~l  351 (377)
                      |.|++-.|.-.|+..
T Consensus       366 p~fs~avGl~~~~~~  380 (418)
T COG0849         366 PAFSTAVGLLLYGAL  380 (418)
T ss_pred             chhhhhHHHHHHHhh
Confidence            899999999888875

>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4.8e-13  Score=121.52  Aligned_cols=214  Identities=18%  Similarity=0.237  Sum_probs=129.2

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEE--EeeCCee-c
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTV--PIYEGYA-L  173 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~--~v~~g~~-~  173 (377)
                      ...|+++|.+++..+|+...+ +--..|.+.+.++++|.+|+.++|.      .+-+|.|+|+++.+|+  -|-+|.- +
T Consensus       173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV  251 (663)
T KOG0100|consen  173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV  251 (663)
T ss_pred             cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence            458999999999999885544 4467899999999999999999974      5789999999997766  5566643 2


Q ss_pred             CcceEEEcccHHHHHHHHHHHHHH-----cCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCc
Q 017124          174 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQ  248 (377)
Q Consensus       174 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (377)
                      ........+||.++++++++++.+     .+.++..  +...+.+++++.-         ..+-..++......++    
T Consensus       252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~E---------kAKRaLSsqhq~riEI----  316 (663)
T KOG0100|consen  252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVE---------KAKRALSSQHQVRIEI----  316 (663)
T ss_pred             EecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHH---------HHHhhhccccceEEee----
Confidence            333345689999999998877643     2444432  4444555544211         1111111222233332    


Q ss_pred             EEeeCCccccccccCCCCccCCCC---------CCChHHHHHHHHhcC--ChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017124          249 VITIGAERFRCPEVLFQPSLIGME---------AAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSR  317 (377)
Q Consensus       249 ~i~v~~~~~~~~e~lf~p~~~~~~---------~~~l~~~I~~~i~~~--~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~  317 (377)
                                  |.||....++..         ...|-..-.+-+++.  +.++++.-++-|+|+||+++||    .+++
T Consensus       317 ------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQq  380 (663)
T KOG0100|consen  317 ------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQQ  380 (663)
T ss_pred             ------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHHH
Confidence                        444443222110         001111111112222  5667777888999999999999    4555


Q ss_pred             HHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      -|+..+.-.   +....-+|+-++..||++-|-.
T Consensus       381 llk~fF~GK---epskGinPdEAVAYGAAVQaGv  411 (663)
T KOG0100|consen  381 LLKDFFNGK---EPSKGINPDEAVAYGAAVQAGV  411 (663)
T ss_pred             HHHHHhCCC---CccCCCChHHHHHhhhhhhhcc
Confidence            555544221   1112235677788888776643

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=99.45  E-value=3.8e-14  Score=117.05  Aligned_cols=236  Identities=17%  Similarity=0.189  Sum_probs=153.7

Q ss_pred             CCCCCEEEeCCCCceEEeeeC-CCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHH-
Q 017124            5 EDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD-   82 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~-~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~-   82 (377)
                      +..-.+.+|+||..+..=.-. +..|-..                                 ..+...-+++|.+.||- 
T Consensus        27 ~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~e   73 (277)
T COG4820          27 ESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFFE   73 (277)
T ss_pred             cCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehhh
Confidence            345668999999998864443 3344211                                 01122345778887762 


Q ss_pred             ---HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCC
Q 017124           83 ---DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGD  159 (377)
Q Consensus        83 ---~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~  159 (377)
                         .++++.+.+ .++|++...  ..--+.||.......+....+ .|..|...++.+++|.|+++-.+.++|-|||+|+
T Consensus        74 aveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGG  149 (277)
T COG4820          74 AVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGG  149 (277)
T ss_pred             HHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhHHHHhccCCCcEEEeCC
Confidence               334444444 577887542  223344555533333434444 4999999999999999999999999999999999


Q ss_pred             CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017124          160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE  239 (377)
Q Consensus       160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~  239 (377)
                      ++|-|+.+-+|.++  ....-+.||.|++-.|+...   ++      +.+.+|++|+..---.                 
T Consensus       150 GTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~y---gi------~~EeAE~~Kr~~k~~~-----------------  201 (277)
T COG4820         150 GTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGNY---GI------SLEEAEQYKRGHKKGE-----------------  201 (277)
T ss_pred             CcceeEEEEcCcEE--EeccCCCCceeEEEEEeccc---Cc------CHhHHHHhhhccccch-----------------
Confidence            99999999999999  44556999998887665332   33      3456787776431100                 


Q ss_pred             eeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017124          240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI  319 (377)
Q Consensus       240 ~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL  319 (377)
                                     +-|......++.         +.+.+.+-|...++       ..+.|+||.+..||+++-++++|
T Consensus       202 ---------------Eif~~v~PV~eK---------MAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~l  250 (277)
T COG4820         202 ---------------EIFPVVKPVYEK---------MAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQL  250 (277)
T ss_pred             ---------------hcccchhHHHHH---------HHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHHh
Confidence                           001110111111         55666666666655       36899999999999999999998


Q ss_pred             HhcCCCCceEEEECCCCCccccchh
Q 017124          320 TALAPSSMKIKVVAPPERKYSVWIG  344 (377)
Q Consensus       320 ~~~~~~~~~v~v~~~~~~~~~~w~G  344 (377)
                              ...++.|..|.|-.=+|
T Consensus       251 --------~l~v~~P~~p~y~TPLg  267 (277)
T COG4820         251 --------ALQVHLPQHPLYMTPLG  267 (277)
T ss_pred             --------ccccccCCCcceechhh
Confidence                    23555555555544444

>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.6e-12  Score=126.48  Aligned_cols=214  Identities=17%  Similarity=0.220  Sum_probs=134.3

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-------ceEEEEeCCCCceEEEEe--eCCe-e
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI--YEGY-A  172 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v--~~g~-~  172 (377)
                      ..+++++|..++..+|+..-+.. ..+|++.+.++++|.||++++|.       .+-+|.|+|+++.+|+++  -+|. .
T Consensus       144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~  222 (620)
T KOG0101|consen  144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE  222 (620)
T ss_pred             eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence            45899999999999998777766 77999999999999999999873       467999999999888866  3342 2


Q ss_pred             cCcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeE
Q 017124          173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY  242 (377)
Q Consensus       173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      +.......++||.++++.+.+++...     +........     ....|..|+.+...                .....
T Consensus       223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i  286 (620)
T KOG0101|consen  223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI  286 (620)
T ss_pred             hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence            33344467999999999998877421     111111000     12233333333211                11111


Q ss_pred             ---EcCCCcEEeeCCccccc---cccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017124          243 ---ELPDGQVITIGAERFRC---PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       243 ---~~~~~~~i~v~~~~~~~---~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~  316 (377)
                         .+-+|..+...-.|-++   ..-||..         ..+.+..++...  .+-+..++.|||+||.+++|.+..-++
T Consensus       287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da--~~dk~~i~~vvlVGGstriPk~~~ll~  355 (620)
T KOG0101|consen  287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDA--KLDKSDIDEVVLVGGSTRIPKVQKLLE  355 (620)
T ss_pred             ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhh--ccCccCCceeEEecCcccchHHHHHHH
Confidence               12233333333233332   2234433         333444444432  233444678999999999997776666


Q ss_pred             HHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          317 REITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +-+..       -++..+-+|+.++..||++.|++
T Consensus       356 d~f~~-------k~~~~sinpDeavA~GAavqaa~  383 (620)
T KOG0101|consen  356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI  383 (620)
T ss_pred             HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence            55522       13345557899999999999876

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=99.37  E-value=4.9e-11  Score=112.89  Aligned_cols=155  Identities=17%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC-----------Cc-eEEEEeCCCCceEEEEeeCCeecCcceEEEc
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD  181 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----------~~-~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~  181 (377)
                      ++...+.+.+.+ +.+|+.-..+..+++|.+-+..           .. +.++||||+++|+++.+.+|.++  ..+.++
T Consensus       141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~  217 (348)
T TIGR01175       141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP  217 (348)
T ss_pred             cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence            677778888775 8899998888888888754331           12 48999999999999999999998  778899


Q ss_pred             ccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccc
Q 017124          182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPE  261 (377)
Q Consensus       182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e  261 (377)
                      +||.++++.+.+.+   +      .+.+.++++|.+.++... ...+                              ..+
T Consensus       218 ~G~~~i~~~i~~~~---~------~~~~~Ae~~k~~~~~~~~-~~~~------------------------------~~~  257 (348)
T TIGR01175       218 FGTRQLTSELSRAY---G------LNPEEAGEAKQQGGLPLL-YDPE------------------------------VLR  257 (348)
T ss_pred             chHHHHHHHHHHHc---C------CCHHHHHHHHhcCCCCCc-hhHH------------------------------HHH
Confidence            99999999998665   2      234668888887654211 0000                              000


Q ss_pred             cCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017124          262 VLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT  320 (377)
Q Consensus       262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~  320 (377)
                      ..++         .+..-|.+++.-+-........+.|+||||+++++||.+.|+++|.
T Consensus       258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~  307 (348)
T TIGR01175       258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG  307 (348)
T ss_pred             HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence            0111         1444555565433222223346889999999999999999999994

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PRK13917 plasmid segregation protein ParM; Provisional

Probab=99.32  E-value=6.7e-11  Score=111.04  Aligned_cols=187  Identities=14%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCC-cccc------------CCCcc---ceeccccccccccceee
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-VMVG------------MGQKD---AYVGDEAQSKRGILTLK   70 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~-~~~~------------~~~~~---~~vg~~~~~~~~~~~~~   70 (377)
                      +.++.||+|-.+||+-....   ...+|+.++...... ...+            .++..   |++|+++........-.
T Consensus         2 ~~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~   78 (344)
T PRK13917          2 VYVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDT   78 (344)
T ss_pred             ceEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCc
Confidence            35899999999999866422   234566654332111 1111            12233   77777653221100000


Q ss_pred             ceecCCccCCHHHHHHHHHHhhcccccCC--CCCCcEE--EEeCCCCChHH-HHHHhhhhccc-----------cCCCeE
Q 017124           71 YPIEHGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVL--LTEAPLNPKAN-REKMTQIMFET-----------FNVPAM  134 (377)
Q Consensus        71 ~p~~~g~i~d~~~~~~~~~~~~~~~L~~~--~~~~~vv--l~~p~~~~~~~-~~~l~~~lfe~-----------~~~~~v  134 (377)
                      +-.....  .-+.++.++..++...+...  .+...++  +-.|...-... ++.+.+.+-..           ..+..|
T Consensus        79 ~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V  156 (344)
T PRK13917         79 YSTNDRY--DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV  156 (344)
T ss_pred             ccccccc--cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence            1111111  12456666666653333221  1123333  34554432222 24454443221           446778


Q ss_pred             EeeehhhhhhhhcCC-------------ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017124          135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      .++++|++|++....             ...+|||||+.+|+++.+.++.+....+...+.|..++.+.+.+.+..+
T Consensus       157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~  233 (344)
T PRK13917        157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK  233 (344)
T ss_pred             EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence            999999999865421             2569999999999999999999988777778999999999999999543

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=99.28  E-value=1.4e-10  Score=109.16  Aligned_cols=194  Identities=21%  Similarity=0.323  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHhhcccccCCCCC-----------------CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhh
Q 017124           80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL  142 (377)
Q Consensus        80 d~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~  142 (377)
                      +.+.++..+++=..+.+..+.++                 ..|+++.-   ++...+..++.+ +.+|.+-..+=-++.|
T Consensus        86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~~-~~aGL~~~~vDv~~~A  161 (340)
T PF11104_consen   86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVELF-EEAGLKPVAVDVEAFA  161 (340)
T ss_dssp             -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred             CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence            44667777766655666554322                 23444432   566667777665 8888887666555554


Q ss_pred             h--hhhc---------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHH
Q 017124          143 S--LYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV  211 (377)
Q Consensus       143 a--~~~~---------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~  211 (377)
                      .  ++..         ...+.++||||++.|+++.+.+|.++  ..+.+++||+++++.+.+.+         ..+.+.+
T Consensus       162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A  230 (340)
T PF11104_consen  162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA  230 (340)
T ss_dssp             GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred             HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence            3  2222         12356999999999999999999999  77889999999999999776         2345667


Q ss_pred             HHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhH
Q 017124          212 RDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDI  291 (377)
Q Consensus       212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~  291 (377)
                      +.+|.+... ..+...+                              +.+..++         .|..-|.+++.-+-...
T Consensus       231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~---------~l~~EI~rsl~~y~~~~  270 (340)
T PF11104_consen  231 EELKRSGGL-PEEYDQD------------------------------ALRPFLE---------ELAREIRRSLDFYQSQS  270 (340)
T ss_dssp             HHHHHHT-------HHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred             HHHHhcCCC-CcchHHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHhcC
Confidence            777776432 1111100                              0011111         16666667776554444


Q ss_pred             HHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017124          292 RKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP  334 (377)
Q Consensus       292 ~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~  334 (377)
                      ...-++.|+||||+|+++||.+.|.++|      +.++.+..+
T Consensus       271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~p  307 (340)
T PF11104_consen  271 GGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVINP  307 (340)
T ss_dssp             -----SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--G
T ss_pred             CCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcCh
Confidence            4556788999999999999999999999      335555443

>TIGR03739 PRTRC_D PRTRC system protein D

Probab=99.27  E-value=1.9e-10  Score=107.28  Aligned_cols=183  Identities=13%  Similarity=0.065  Sum_probs=117.1

Q ss_pred             EeCCCCceEEeeeC-CCCC-CCCCCcceeecCCCC------------ccccCCCccceeccccccccccceeeceecCCc
Q 017124           12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI   77 (377)
Q Consensus        12 iD~Gs~~~k~G~~~-~~~P-~~~~p~~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~   77 (377)
                      ||+|-.++|+-+.+ +..+ ...+|+.++......            .....++..++||+.+..... ....+.+.+..
T Consensus         2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~   80 (320)
T TIGR03739         2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY   80 (320)
T ss_pred             ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence            89999999987653 2333 346788765422111            011124566788877633221 11122233333


Q ss_pred             cCCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccc--------cCCCeEEeeehhhhhhhhc--
Q 017124           78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNVPAMYVAIQAVLSLYAS--  147 (377)
Q Consensus        78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~--  147 (377)
                      ..+ +....++.+++.. .... ....+++-.|...-..+++.+.+.+-..        ..+..|.++|+|+.|.+..  
T Consensus        81 ~~~-~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~  157 (320)
T TIGR03739        81 TET-PEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA  157 (320)
T ss_pred             cCC-HHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence            322 3455555555522 2221 2224666677766566777777766432        4678899999999887653  


Q ss_pred             -------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017124          148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       148 -------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                             ...+.+|||||+.+|+++.+.++.+....+.+.+.|-..+.+.+.+.+.++
T Consensus       158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~  215 (320)
T TIGR03739       158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD  215 (320)
T ss_pred             cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence                   234679999999999999998888887777778999999999999998654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.

>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.2e-10  Score=113.31  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=76.4

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC----------ceEEEEeCCCCceEEEEeeCCee
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGYA  172 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~~v~~g~~  172 (377)
                      ..+++++|+++.+.+|..+++.+ +.+|.+.++++++..++|+.+|.          +.-++.|+|+++|.++.|.--.+
T Consensus       159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v  237 (902)
T KOG0104|consen  159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV  237 (902)
T ss_pred             hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence            46999999999999999999988 88999999999999999999874          46799999999999998842211


Q ss_pred             cCc-------------ceEEEcccHHHHHHHHHHHHHH
Q 017124          173 LPH-------------AILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       173 ~~~-------------~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                      -..             ......+||..++.+|..+|..
T Consensus       238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~  275 (902)
T KOG0104|consen  238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN  275 (902)
T ss_pred             ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence            111             1112368999999999998864

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=1.9e-09  Score=96.46  Aligned_cols=149  Identities=18%  Similarity=0.219  Sum_probs=98.3

Q ss_pred             HhhhhccccCCCeEEeeehhhhhhhhc-------C-Cc---eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 017124          121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------G-RT---TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD  189 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~---~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~  189 (377)
                      ...-+|+..|.....+--+..+..-++       + ..   ..+|+|||++.|.++.+.+|+++  ..+..++||+.++.
T Consensus       153 ~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~  230 (354)
T COG4972         153 SRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQ  230 (354)
T ss_pred             HHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHH
Confidence            334455767766554444444432211       1 12   24699999999999999999999  77889999999999


Q ss_pred             HHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccC
Q 017124          190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLI  269 (377)
Q Consensus       190 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~  269 (377)
                      .+.+..         ..+.+.++++|...... .+|..+.-.                                  |   
T Consensus       231 ~i~r~~---------~L~~~~a~~~k~~~~~P-~~y~~~vl~----------------------------------~---  263 (354)
T COG4972         231 EIQRAY---------SLTEEKAEEIKRGGTLP-TDYGSEVLR----------------------------------P---  263 (354)
T ss_pred             HHHHHh---------CCChhHhHHHHhCCCCC-CchhHHHHH----------------------------------H---
Confidence            998776         22345577877766542 233221100                                  0   


Q ss_pred             CCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017124          270 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT  320 (377)
Q Consensus       270 ~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~  320 (377)
                        ....|.+-|.++|+-+-.--.-.-+..|+|+||++.+.|+.+.+.+.|.
T Consensus       264 --f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~  312 (354)
T COG4972         264 --FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS  312 (354)
T ss_pred             --HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence              0112677777777654221122345689999999999999999999994

>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.1e-08  Score=99.63  Aligned_cols=96  Identities=13%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             CCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------------ceEEEEeCCCCceEEEEe-
Q 017124          101 EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI-  167 (377)
Q Consensus       101 ~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v-  167 (377)
                      .-.+++|.+|.+++..+|..+++.+ ...|++.+.++++..|+++++|.            .+-..||+||+.++++.. 
T Consensus       136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a  214 (727)
T KOG0103|consen  136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA  214 (727)
T ss_pred             CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence            3467999999999999999999998 88999999999999999999984            357899999999877754 


Q ss_pred             -eCCeec-CcceEEEcccHHHHHHHHHHHHHH
Q 017124          168 -YEGYAL-PHAILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       168 -~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                       -.|..- ..+...-.+||+++++.|.+++..
T Consensus       215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~  246 (727)
T KOG0103|consen  215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK  246 (727)
T ss_pred             eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence             444332 222334489999999999998875

>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3.6e-07  Score=86.79  Aligned_cols=211  Identities=18%  Similarity=0.264  Sum_probs=125.6

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc-----eEEEEeCCCCceEEE--EeeCCeec-C
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTV--PIYEGYAL-P  174 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~--~v~~g~~~-~  174 (377)
                      ...++++|.+++..+|+...+ +..-+|...+-.+++|.+|++++|..     .-.|.|+|+++..|+  -+.+|.-. .
T Consensus       161 ~~avvtvpAyfndsqRqaTkd-ag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk  239 (640)
T KOG0102|consen  161 KNAVITVPAYFNDSQRQATKD-AGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK  239 (640)
T ss_pred             hheeeccHHHHhHHHHHHhHh-hhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence            468999999999999885544 44888999999999999999999853     458999999997766  45677543 2


Q ss_pred             cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchhHHHHHHHHHH-------hcceeecCHHHHHHHhccCCCcceeE
Q 017124          175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAEREIVRDMKE-------KLAYVALDYEQELEAAKSSSAVEKSY  242 (377)
Q Consensus       175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      ........||.+++..+..++-..     ++.+.  .+...++.+++       .+....   +         .....+|
T Consensus       240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~---~---------tei~lp~  305 (640)
T KOG0102|consen  240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQ---Q---------TEINLPF  305 (640)
T ss_pred             eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcc---c---------ceeccce
Confidence            333456789999999998877421     32222  23333333332       222110   0         0111222


Q ss_pred             EcCCC---cEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH-----HHhhcCceeccCCcCCcChHHH
Q 017124          243 ELPDG---QVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIR-----KDLYGNIVLSGGSTMFPGIADR  314 (377)
Q Consensus       243 ~~~~~---~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~-----~~l~~nIvl~GG~s~i~gl~~r  314 (377)
                      ...|.   +-+++...|-.+.|.             +..+|.+.|.-|-.++|     ..-++-|+|+||.+++|-..+.
T Consensus       306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~  372 (640)
T KOG0102|consen  306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST  372 (640)
T ss_pred             eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence            22222   333444444433222             45566666655533333     3455679999999999966555


Q ss_pred             HHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      +++ +-..-|.       ..-+|+-++-.||++-+
T Consensus       373 V~e-~fgk~p~-------~~vnPdeava~GAaiqg  399 (640)
T KOG0102|consen  373 VKE-LFGKGPS-------KGVNPDEAVAGGAAIQG  399 (640)
T ss_pred             HHH-HhCCCCC-------CCcCCcchhccchhhcc
Confidence            553 3222222       11245555666655544

>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []

Probab=98.55  E-value=2.4e-07  Score=86.32  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             HHHHhhcccccCCCCCCcEEEEeCCC---CCh--HHHHHHhh---hhc--------cccCCCeEEeeehhhhhhhhc---
Q 017124           87 IWHHTFYNELRVAPEEHPVLLTEAPL---NPK--ANREKMTQ---IMF--------ETFNVPAMYVAIQAVLSLYAS---  147 (377)
Q Consensus        87 ~~~~~~~~~L~~~~~~~~vvl~~p~~---~~~--~~~~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~---  147 (377)
                      ...|.+ ..-+..+.+..+++..|.-   ...  ..++.+.+   .+.        +.+.+..|.+.|++++|.|..   
T Consensus        81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~  159 (318)
T PF06406_consen   81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD  159 (318)
T ss_dssp             HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence            344555 3345556666678888822   211  11222211   111        234477999999999998864   


Q ss_pred             --CCceEEEEeCCCCceEEEEeeCCeec-CcceEEEcccHHHHHHHHHHHHHH
Q 017124          148 --GRTTGIVLDSGDGVSHTVPIYEGYAL-PHAILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       148 --g~~~~lVVDiG~~~t~v~~v~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                        ...+.+|||||+.+|+++.|.++... ..+....++|-..+.+.+.+.|..
T Consensus       160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~  212 (318)
T PF06406_consen  160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS  212 (318)
T ss_dssp             S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred             hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence              23678999999999999999876543 333344578999999999988854

They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=98.54  E-value=4.5e-06  Score=75.01  Aligned_cols=43  Identities=28%  Similarity=0.607  Sum_probs=36.1

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL  348 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~  348 (377)
                      .|+++||.++.++|.+.+.+.|.        ..+..++++.+..-+||+++
T Consensus       206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~  248 (248)
T TIGR00241       206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL  248 (248)
T ss_pred             CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence            79999999999999999998882        35666777888889998764

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=98.30  E-value=5e-06  Score=79.16  Aligned_cols=163  Identities=15%  Similarity=0.164  Sum_probs=97.5

Q ss_pred             CCCCCCCCCEEEeCCCCceEEeeeCCC----CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCC
Q 017124            1 MADAEDIQPLVCDNGTGMVKAGFAGDD----APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHG   76 (377)
Q Consensus         1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~----~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g   76 (377)
                      ||. ++-..|.||+||++|.+=|+.-.    .+....|-..-.           +++++.-.        .-...|+...
T Consensus         1 ~~~-~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-----------dkev~yrS--------~i~fTPl~~~   60 (475)
T PRK10719          1 MMT-EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-----------DKEIIYRS--------PIYFTPLLKQ   60 (475)
T ss_pred             CCc-cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-----------eeEEEEec--------CceecCCCCC
Confidence            554 66778999999999998777422    122222221100           11111111        1245688777


Q ss_pred             ccCCHHHHHHHHHHhhcccccCCCCC--CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEee-----------ehhhhh
Q 017124           77 IVSNWDDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-----------IQAVLS  143 (377)
Q Consensus        77 ~i~d~~~~~~~~~~~~~~~L~~~~~~--~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~-----------~~~~~a  143 (377)
                      ..-|-++++++...=| +.-++.+++  ..+.++.-...   .++.+.+++ ++++...=-|+           -.++++
T Consensus        61 ~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~---~~~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~AS  135 (475)
T PRK10719         61 GEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETA---RKENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGA  135 (475)
T ss_pred             ccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechh---HHHHHHHHH-HHhcccccceeeeccCccHHHhhhHHHh
Confidence            7789999999999886 777777653  33333322222   223333333 33222111122           114433


Q ss_pred             hhhc----CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 017124          144 LYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       144 ~~~~----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      +.+.    .....++||||+++|+++.+.+|.++  +....++||++++..
T Consensus       136 g~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D  184 (475)
T PRK10719        136 GAQTLSEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD  184 (475)
T ss_pred             hHHHhhhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence            3222    12478999999999999999999999  777889999988765

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=98.22  E-value=8.4e-06  Score=73.63  Aligned_cols=48  Identities=19%  Similarity=0.389  Sum_probs=39.6

Q ss_pred             hhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEE-CCCCCccccchhhhhhhc
Q 017124          295 LYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVV-APPERKYSVWIGGSILAS  350 (377)
Q Consensus       295 l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~  350 (377)
                      +-..|+++||.++-+|+.+.|++.|..        ++. .+++|++...+||+++|.
T Consensus       239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~  287 (293)
T TIGR03192       239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY  287 (293)
T ss_pred             CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence            446799999999999999999998842        333 356789999999999984

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=98.18  E-value=9.1e-05  Score=68.18  Aligned_cols=45  Identities=27%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          299 IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       299 Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ||++||++...++.+.+.+.|        ..+|+.||+|++.-..||+++|+-
T Consensus       346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~  390 (396)
T COG1924         346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE  390 (396)
T ss_pred             EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence            999999999999999999888        458899999999999999998853

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=98.16  E-value=7.9e-06  Score=76.71  Aligned_cols=46  Identities=28%  Similarity=0.564  Sum_probs=40.2

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +.|+++||.++.+|+.+.+++.|.        .+++.|++|++...+||+++|+
T Consensus       357 ~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~  402 (404)
T TIGR03286       357 EPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS  402 (404)
T ss_pred             CcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence            559999999999999999998883        3566788999999999999984

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=98.13  E-value=1.8e-05  Score=70.59  Aligned_cols=50  Identities=20%  Similarity=0.440  Sum_probs=40.7

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      ++|+++||.++-+++.+.|+++|...   ...+.+..+++|++...+||++++
T Consensus       213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~  262 (262)
T TIGR02261       213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG  262 (262)
T ss_pred             CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence            36999999999999999999998532   124556667889999999999875

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=97.33  E-value=0.0017  Score=62.17  Aligned_cols=173  Identities=18%  Similarity=0.260  Sum_probs=104.8

Q ss_pred             CCCEEEeCCCCceEEeeeC---CC-CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHH
Q 017124            7 IQPLVCDNGTGMVKAGFAG---DD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD   82 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~---~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~   82 (377)
                      -..|.||+||++|++=|+.   ++ .+.+..|-..-                 ++.+..=.  ..-...|+.+...-|-+
T Consensus         3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYr--S~I~fTPl~~~~~ID~~   63 (473)
T PF06277_consen    3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYR--SPIYFTPLLSQTEIDAE   63 (473)
T ss_pred             eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEec--CCccccCCCCCCccCHH
Confidence            3468999999999987775   21 22223232211                 11111100  01235688888888999


Q ss_pred             HHHHHHHHhhcccccCCCCC--C-cEEEEeCCCCChHHHHHHhhhhccccCCCeEEe---eehhhhhhhhcCC-------
Q 017124           83 DMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYV---AIQAVLSLYASGR-------  149 (377)
Q Consensus        83 ~~~~~~~~~~~~~L~~~~~~--~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~-------  149 (377)
                      +++++++.=| +.-++.+++  . .|++|--.. .++.-+.+.+.+-+.+|==.|.-   --+++.|..++|.       
T Consensus        64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~  141 (473)
T PF06277_consen   64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEH  141 (473)
T ss_pred             HHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhh
Confidence            9999999996 888887754  3 355553332 33333334444434333111100   1256677777662       


Q ss_pred             -ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHH-----------HHHHHHHHHHHcCCCC
Q 017124          150 -TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-----------LTDALMKILTERGYSF  202 (377)
Q Consensus       150 -~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~-----------i~~~l~~~l~~~~~~~  202 (377)
                       ..-+=+|||+++|.++.+.+|.++  ...-.++||+.           +..-++.++.+.+.++
T Consensus       142 ~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~  204 (473)
T PF06277_consen  142 HTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL  204 (473)
T ss_pred             CCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence             355668999999999999999999  56667999963           3444556666555543

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>PRK13317 pantothenate kinase; Provisional

Probab=97.26  E-value=0.011  Score=53.82  Aligned_cols=52  Identities=23%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             HhhcCceecc-CCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          294 DLYGNIVLSG-GSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       294 ~l~~nIvl~G-G~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .-.++|+++| |.++.|++.+.+.+.++-.     ..++.-+++|++...+||++++.
T Consensus       221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~  273 (277)
T PRK13317        221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT  273 (277)
T ss_pred             cCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence            3447999999 7999999999999877421     24666788899999999998874

>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]

Probab=96.76  E-value=0.0034  Score=55.66  Aligned_cols=187  Identities=18%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc-----eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      .+.+-+.+++.+-+.+|++.-.---++-+|..++-.+     .-.|+|+|+++|+.+.+-....+  ...+..=.|+.++
T Consensus        93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVT  170 (332)
T PF08841_consen   93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVT  170 (332)
T ss_dssp             SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHH
T ss_pred             ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhH
Confidence            4444466777787889999888889999998887543     35789999999999888655444  3344566789999


Q ss_pred             HHHHHHHHHcCCCCcchhHHHHHHHHHHhc-ceeecCHH----HH----HHHhccCCCcceeEEcCCCcEEeeCC-----
Q 017124          189 DALMKILTERGYSFTTTAEREIVRDMKEKL-AYVALDYE----QE----LEAAKSSSAVEKSYELPDGQVITIGA-----  254 (377)
Q Consensus       189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~-~~v~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~i~v~~-----  254 (377)
                      -.+..-|   |.     .+.+.+|+||+-- +.|..-+.    +-    .++...+..+.+...+.++..+.++.     
T Consensus       171 mlI~sEL---Gl-----~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lE  242 (332)
T PF08841_consen  171 MLINSEL---GL-----EDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLE  242 (332)
T ss_dssp             HHHHHHC---T------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HH
T ss_pred             HHHHHhh---CC-----CCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHH
Confidence            8887666   22     2678899999743 22211000    00    00000001111122222222232211     


Q ss_pred             ----ccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhc
Q 017124          255 ----ERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITAL  322 (377)
Q Consensus       255 ----~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~  322 (377)
                          .|..+.+-.            ...-+.+++.+..+.-.-..+..++|+||++.=--+.+-+.++|+++
T Consensus       243 kir~vRr~AK~kV------------FVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y  302 (332)
T PF08841_consen  243 KIRSVRREAKEKV------------FVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHY  302 (332)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhhhh------------hHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhC
Confidence                000011111            12233455665533222234456999999999888889999999764

This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.42  E-value=0.011  Score=55.47  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      -..|+++||.++-+++.+.|++.|....+   ..+++.+++|++...+||+++|
T Consensus       382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a  432 (432)
T TIGR02259       382 TDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA  432 (432)
T ss_pred             CCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence            46899999999999999999999965432   2356678899999999999875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=96.15  E-value=0.0064  Score=55.36  Aligned_cols=48  Identities=25%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          299 IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       299 Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      |+++||..+-+.+.+.|++.|++..+..   .+..+.+|.+.+..||.++|
T Consensus       224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA  271 (271)
T PF01869_consen  224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA  271 (271)
T ss_dssp             EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred             EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence            9999999988777777766665544442   23344567899999999886

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.84  E-value=0.038  Score=54.26  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             HHHhhhhccccCCCe--EEeeehhhhhhhhc----C-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 017124          119 EKMTQIMFETFNVPA--MYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      +.+.+.+-+.+|++.  +.=-.++-.+.++.    + ...++|+|||+++|.++-+-+..+.  .....++|.-.+++.+
T Consensus        91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~  168 (492)
T COG0248          91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF  168 (492)
T ss_pred             HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence            344444445556552  22233444444432    3 5689999999999999999877776  6667899986666555


Q ss_pred             H
Q 017124          192 M  192 (377)
Q Consensus       192 ~  192 (377)
                      .
T Consensus       169 ~  169 (492)
T COG0248         169 F  169 (492)
T ss_pred             c
Confidence            3

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=95.73  E-value=0.045  Score=50.59  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             hHHHHHHhhhhccccCCCeEEeeehh---hhhhhhc----CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017124          115 KANREKMTQIMFETFNVPAMYVAIQA---VLSLYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       115 ~~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      -..++.+++.+.+..|++ +.+++..   .+...+.    ...+++++|+|+++|.++.+.++.+.  .....|+|.-.+
T Consensus        84 A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl  160 (300)
T TIGR03706        84 AKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRL  160 (300)
T ss_pred             CCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEh
Confidence            344556666666666654 3444433   3322221    22457999999999999999888877  667789999777


Q ss_pred             HHHHH
Q 017124          188 TDALM  192 (377)
Q Consensus       188 ~~~l~  192 (377)
                      ++.+.
T Consensus       161 ~e~f~  165 (300)
T TIGR03706       161 TEQFF  165 (300)
T ss_pred             HHhhC
Confidence            76653

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=95.47  E-value=0.12  Score=51.42  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             EEEeCCCCChHHHHHHhhhhccccCCCeEEeee---hhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCCeecCcce
Q 017124          106 LLTEAPLNPKANREKMTQIMFETFNVPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI  177 (377)
Q Consensus       106 vl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~  177 (377)
                      ++.....-.-..++.+++.+.+..|++ |-+++   ++.+..++.     ...+++|+|||+++|.++.+.+|.+.  ..
T Consensus        81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~  157 (496)
T PRK11031         81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL  157 (496)
T ss_pred             EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence            333333333344566666666666765 23333   333333221     12358999999999999999999877  66


Q ss_pred             EEEcccHHHHHHHH
Q 017124          178 LRLDLAGRDLTDAL  191 (377)
Q Consensus       178 ~~~~~GG~~i~~~l  191 (377)
                      ...++|.-.+++.+
T Consensus       158 ~Sl~lG~vrl~e~f  171 (496)
T PRK11031        158 FSLSMGCVTWLERY  171 (496)
T ss_pred             eEEeccchHHHHHh
Confidence            77899987765443

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=95.42  E-value=0.17  Score=45.94  Aligned_cols=68  Identities=16%  Similarity=0.012  Sum_probs=44.6

Q ss_pred             ChHHHHHHHHhcCCh-hHHHHhhcCceeccC-CcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017124          275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       275 ~l~~~I~~~i~~~~~-~~~~~l~~nIvl~GG-~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      +|.++|.+.|..+.. --+..-.++|+++|| .+..|.+.+++...+.- .    ..+++-+.+..+...+||.+
T Consensus       209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-~----~~~~ifp~h~~y~gAlGAaL  278 (279)
T TIGR00555       209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-W----SKKALFLEHEGYSGAIGALL  278 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-c----CceEEEECCcchHHHhhhcc
Confidence            455555555543321 123444788999999 78899999999877642 2    24666666677888888764

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PRK09557 fructokinase; Reviewed

Probab=95.20  E-value=1  Score=41.50  Aligned_cols=67  Identities=18%  Similarity=0.113  Sum_probs=40.8

Q ss_pred             hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCC-CCceEEEECCCCCccccchhhhhhh
Q 017124          276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP-SSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~-~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      |...+...+.-++++       .|+|.||.+..+.+.+.+++.+++... ....+++..+.-...+.-.||+.+.
T Consensus       232 La~~l~~l~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~  299 (301)
T PRK09557        232 LAKSLAHVINILDPD-------VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW  299 (301)
T ss_pred             HHHHHHHHHHHhCCC-------EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence            444555555545543       578888888877788888888876543 2124455544444456677876643

>PRK10854 exopolyphosphatase; Provisional

Probab=94.94  E-value=0.13  Score=51.31  Aligned_cols=73  Identities=12%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             ChHHHHHHhhhhccccCCCeEEeee---hhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHH
Q 017124          114 PKANREKMTQIMFETFNVPAMYVAI---QAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR  185 (377)
Q Consensus       114 ~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~g-----~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~  185 (377)
                      .-..+..+++.+.+..|++- .+++   ++.+..++.-     ..+++|||||+++|.++.+-+|.+.  .....++|.-
T Consensus        94 eA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~S~~lG~v  170 (513)
T PRK10854         94 QALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCV  170 (513)
T ss_pred             cCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeEEEeccee
Confidence            33445666666666667652 3333   3333322211     2458999999999999999998766  4445688876


Q ss_pred             HHHH
Q 017124          186 DLTD  189 (377)
Q Consensus       186 ~i~~  189 (377)
                      .+++
T Consensus       171 rl~e  174 (513)
T PRK10854        171 SFAQ  174 (513)
T ss_pred             eHHh
Confidence            5555

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=94.81  E-value=1.3  Score=41.25  Aligned_cols=52  Identities=17%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             HhhhhccccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+.+-+.+++| |.+.++.-+++++.       +..+.++|.+|.+. ....|.+|+++.
T Consensus        89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~  147 (318)
T TIGR00744        89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH  147 (318)
T ss_pred             HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence            444454667877 77899888887742       35788999999874 777788998765

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK03011 butyrate kinase; Provisional

Probab=94.52  E-value=2.8  Score=39.77  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=33.2

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      +-|||+||.+.-+-|.+++++.+..+.    ++.+....+-..+...||..
T Consensus       297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~r  343 (358)
T PRK03011        297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALR  343 (358)
T ss_pred             CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHH
Confidence            569999999987777788888887653    45776665555555566533

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=94.29  E-value=0.2  Score=39.38  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             EEEeCCCCceEEEEeeCCeecCcceEEEccc--------HHHHH--HHHHHHHHHcCCCCcchhHHHHHHHH-HHhccee
Q 017124          153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYV  221 (377)
Q Consensus       153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v  221 (377)
                      ++||||+++|.++....+...  .....++|        +.+++  +.+.+.++.         ..+.+|++ |.++..+
T Consensus         2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v   70 (120)
T PF14450_consen    2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV   70 (120)
T ss_dssp             EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred             EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence            689999999999999988777  56778999        99999  888877732         34567777 7766544

>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]

Probab=92.42  E-value=1.8  Score=39.83  Aligned_cols=156  Identities=19%  Similarity=0.229  Sum_probs=84.2

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCC---------CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceec
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDD---------APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE   74 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~---------~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~   74 (377)
                      .++-..|.||+||+++.+=|+.-+         .||+.+-     .           ++..        +...-+..|+.
T Consensus         2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii-----~-----------kdi~--------~rS~i~FTPv~   57 (473)
T COG4819           2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEII-----K-----------KDIS--------WRSPIFFTPVD   57 (473)
T ss_pred             cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEE-----e-----------ccee--------eecceeeeeec
Confidence            566778999999999999887432         2222110     0           0110        11123456776


Q ss_pred             CCccCCHHHHHHHHHHhhcccccCCCCC---CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEe---eehhhhhhhhcC
Q 017124           75 HGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYV---AIQAVLSLYASG  148 (377)
Q Consensus        75 ~g~i~d~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g  148 (377)
                      ..--.|.++++.+...=| ..-++.++.   -.++++-...-.+..|. .+..+-..+|-=.|.-   --+++.|--++|
T Consensus        58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaG  135 (473)
T COG4819          58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAG  135 (473)
T ss_pred             ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence            666667778888776664 556666543   34566643332222222 2222212222111110   012233333333


Q ss_pred             -------Cce-EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017124          149 -------RTT-GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       149 -------~~~-~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                             +.+ -+=+|||+++|..+-+-.|++.  ...-.++||+.+
T Consensus       136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi  180 (473)
T COG4819         136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI  180 (473)
T ss_pred             ccchhhhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence                   222 3457999999999999999888  444468999744

>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3

Probab=92.28  E-value=0.14  Score=47.07  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=23.2

Q ss_pred             hhh-hcCCceEEEEeCCCCceEEEEeeCCeecCc
Q 017124          143 SLY-ASGRTTGIVLDSGDGVSHTVPIYEGYALPH  175 (377)
Q Consensus       143 a~~-~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~  175 (377)
                      +++ ..+..+++++|||+++|+|.+|.||.+...
T Consensus        69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~  102 (290)
T PF01968_consen   69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS  102 (290)
T ss_dssp             HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred             hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence            344 557889999999999999999999998633

5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.

>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3

Probab=91.63  E-value=0.39  Score=44.02  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             HHHHHHhhhhccccCCCeEEeeeh---hhhhh----hhc-CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017124          116 ANREKMTQIMFETFNVPAMYVAIQ---AVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL  187 (377)
Q Consensus       116 ~~~~~l~~~lfe~~~~~~v~~~~~---~~~a~----~~~-g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i  187 (377)
                      ..++.+++.+.+..|++- .+++.   +.+..    .+. ...+++|+|+|+++|.++.+.+|.+.  .....|+|.-.+
T Consensus        71 ~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl  147 (285)
T PF02541_consen   71 KNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAVRL  147 (285)
T ss_dssp             TTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HHHH
T ss_pred             cCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHHHH
Confidence            334556666667777653 33432   22222    223 56789999999999999999999988  667889999877


Q ss_pred             HHHHH
Q 017124          188 TDALM  192 (377)
Q Consensus       188 ~~~l~  192 (377)
                      ++.+.
T Consensus       148 ~e~~~  152 (285)
T PF02541_consen  148 TERFF  152 (285)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            77663

6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=91.19  E-value=0.97  Score=42.03  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC---CCccccchhhhhhhcc
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP---ERKYSVWIGGSILASL  351 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l  351 (377)
                      -|+|+|-.+.++.|.+.+...|...++.    ++....   -.--.+..|++++|+-
T Consensus       263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~g  315 (343)
T PF07318_consen  263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIANG  315 (343)
T ss_pred             EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhhh
Confidence            4999999999999999999999888762    332221   1123478999999863

The function of this family is unknown.

>COG2441 Predicted butyrate kinase [Energy production and conversion]

Probab=91.09  E-value=0.26  Score=43.93  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCcceEEE----cccHHHHHHHHHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDALMKILT  196 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~----~~GG~~i~~~l~~~l~  196 (377)
                      -+-+.|.+|...|.++.|.+|+++.....+.    ..||-.++..++-.|.
T Consensus       163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa  213 (374)
T COG2441         163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA  213 (374)
T ss_pred             hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence            4568899999999999999999995544433    5666566666665554

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=89.28  E-value=0.41  Score=44.32  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.7

Q ss_pred             hcCCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          146 ASGRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       146 ~~g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +....+++.+|+|+++|+|+||.+|.+..
T Consensus       124 a~~~~~~I~~DmGGTTtDi~~i~~G~p~~  152 (318)
T TIGR03123       124 AKRIPECLFVDMGSTTTDIIPIIDGEVAA  152 (318)
T ss_pred             HhcCCCEEEEEcCccceeeEEecCCEeee
Confidence            34478999999999999999999999884

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>TIGR02707 butyr_kinase butyrate kinase

Probab=87.17  E-value=27  Score=33.08  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP  334 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~  334 (377)
                      +-|||+||.+.-+-+.+++++.|..+.    +|.+...
T Consensus       295 D~IV~gGGI~e~~~l~~~I~~~l~~~a----~v~~~pg  328 (351)
T TIGR02707       295 DAIVLTGGLAYSKYFVSEIIKRVSFIA----PVLVYPG  328 (351)
T ss_pred             CEEEEcchhhcCHHHHHHHHHHHHhhC----CEEEeCC
Confidence            469999999987777777777777654    3455533

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PRK13321 pantothenate kinase; Reviewed

Probab=86.97  E-value=6.9  Score=35.20  Aligned_cols=19  Identities=32%  Similarity=0.407  Sum_probs=16.5

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      .+.||+|.+++|+|+..++
T Consensus         2 iL~IDIGnT~ik~gl~~~~   20 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD   20 (256)
T ss_pred             EEEEEECCCeEEEEEEECC
Confidence            4899999999999998654

>PRK13324 pantothenate kinase; Reviewed

Probab=86.31  E-value=18  Score=32.60  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.2

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      .+.||+|-+++|.|+..++
T Consensus         2 iL~iDiGNT~ik~gl~~~~   20 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDGD   20 (258)
T ss_pred             EEEEEeCCCceEEEEEECC
Confidence            5889999999999988643

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=84.88  E-value=15  Score=32.79  Aligned_cols=19  Identities=16%  Similarity=0.132  Sum_probs=16.4

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      -++||+|-++++.|+..+.
T Consensus         2 ~L~iDiGNT~~~~a~~~~~   20 (251)
T COG1521           2 LLLIDIGNTRIVFALYEGG   20 (251)
T ss_pred             eEEEEeCCCeEEEEEecCC
Confidence            4899999999999988743

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=84.69  E-value=9.8  Score=32.92  Aligned_cols=18  Identities=28%  Similarity=0.348  Sum_probs=15.1

Q ss_pred             EEEeCCCCceEEeeeCCC
Q 017124           10 LVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus        10 vviD~Gs~~~k~G~~~~~   27 (377)
                      ++||+|-+++|+|+..++
T Consensus         2 L~iDiGNT~ik~~~~~~~   19 (206)
T PF03309_consen    2 LLIDIGNTRIKWALFDGD   19 (206)
T ss_dssp             EEEEE-SSEEEEEEEETT
T ss_pred             EEEEECCCeEEEEEEECC
Confidence            789999999999998665

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

>PRK13318 pantothenate kinase; Reviewed

Probab=83.14  E-value=25  Score=31.59  Aligned_cols=18  Identities=22%  Similarity=0.163  Sum_probs=15.9

Q ss_pred             CEEEeCCCCceEEeeeCC
Q 017124            9 PLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~   26 (377)
                      .+.||+|.+++|+|+..+
T Consensus         2 iL~IDIGnT~iK~al~d~   19 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYEG   19 (258)
T ss_pred             EEEEEECCCcEEEEEEEC
Confidence            578999999999998863

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=82.45  E-value=0.92  Score=40.12  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=21.3

Q ss_pred             CceEEEEeCCCCceEEEEeeCCe
Q 017124          149 RTTGIVLDSGDGVSHTVPIYEGY  171 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~~g~  171 (377)
                      ..+++.||+|..+|+|.||.+|.
T Consensus       129 ~dsci~VD~GSTTtDIIPi~~ge  151 (330)
T COG1548         129 KDSCILVDMGSTTTDIIPIKDGE  151 (330)
T ss_pred             CCceEEEecCCcccceEeecchh
Confidence            46799999999999999999997

>TIGR00671 baf pantothenate kinase, type III

Probab=82.03  E-value=15  Score=32.84  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=15.7

Q ss_pred             EEEeCCCCceEEeeeCCC
Q 017124           10 LVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus        10 vviD~Gs~~~k~G~~~~~   27 (377)
                      ++||+|-+++|+|+..++
T Consensus         2 L~iDiGNT~i~~g~~~~~   19 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSGN   19 (243)
T ss_pred             EEEEECCCcEEEEEEECC
Confidence            689999999999988654

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=81.15  E-value=45  Score=30.72  Aligned_cols=47  Identities=21%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH  175 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~  175 (377)
                      +.+++| |.+-++.-|++++-       +..+.+.|-+|.+ +-...|.||++...
T Consensus       104 ~~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG-IG~giv~~g~l~~G  157 (314)
T COG1940         104 ARLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTG-IGGGIIVNGKLLRG  157 (314)
T ss_pred             HHHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc-eeEEEEECCEEeec
Confidence            445655 56888888888753       2457888888876 66667888887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		0.0
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		0.0
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		0.0
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		0.0
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		0.0
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		0.0
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		0.0
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		0.0
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		0.0
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		0.0
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		0.0
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		0.0
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		0.0
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		0.0
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		0.0
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		0.0
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		0.0
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		0.0
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		0.0
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		0.0
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		0.0
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		0.0
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		0.0
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		0.0
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		0.0
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		0.0
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		0.0
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		0.0
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		0.0
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		0.0
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		0.0
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		0.0
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		0.0
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		0.0
2p9k_B	394	Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta		1e-100
1k8k_B	394	Crystal Structure Of Arp23 COMPLEX Length = 394		1e-100
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		2e-60
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		2e-59
3qb0_A	498	Crystal Structure Of Actin-Related Protein Arp4 Fro		1e-19
4i6m_A	477	Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex		4e-14
4fo0_A	593	Human Actin-Related Protein Arp8 In Its Atp-Bound S		1e-06

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/375 (88%), Positives = 349/375 (93%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+EQ               
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 347/375 (92%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 347/375 (92%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKH 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/375 (87%), Positives = 347/375 (92%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMKAYKESSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKH 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/375 (87%), Positives = 346/375 (92%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+ VGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSXVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/374 (87%), Positives = 345/374 (92%)
Query: 4   AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
            +++Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSK
Sbjct: 2   GDEVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK 61
Query: 64  RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 123
           RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62  RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 183
           IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 184 GRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXX 243
           GRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSALEKSYE 241
Query: 244 LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303
           LPDGQVITIG ERFR PE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSG 301
Query: 304 GSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGE 363
           G+TMFPGIADRM +E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK E
Sbjct: 302 GTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEE 361
Query: 364 YDESGPAIVHRKCF 377
           YDESGP+IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/375 (86%), Positives = 343/375 (91%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAALNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTA   IVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/373 (86%), Positives = 341/373 (91%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 122 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                L
Sbjct: 182 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 242 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 301
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 362 DESGPSIVHRKCF 374

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/375 (86%), Positives = 343/375 (91%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEA LNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAILNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTA   IVRD+KEKLAYVALD+E                
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAAAAIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 301 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/373 (86%), Positives = 341/373 (91%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/373 (86%), Positives = 341/373 (91%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/373 (86%), Positives = 339/373 (90%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 122 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTT EREIVRD+KEKL YVALD+EQ                L
Sbjct: 182 RDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
            DGQVITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG
Sbjct: 242 KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 301
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 362 DESGPSIVHRKCF 374

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/373 (86%), Positives = 339/373 (90%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTT EREIVRD+KEKL YVALD+EQ                L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
            DGQVITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 KDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/377 (84%), Positives = 342/377 (90%)
Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA
Sbjct: 1   MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
           DLAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E              
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
              LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 300
Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           +SGG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 360
Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDE+GP+IVHRKCF
Sbjct: 361 KQEYDEAGPSIVHRKCF 377

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/373 (85%), Positives = 342/373 (91%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVIT+G ERFRCPE +FQPS +GME+AGIHET+YNSIMKCD+DIRKDLY N VLSGG
Sbjct: 243 PDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/373 (86%), Positives = 340/373 (91%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 3   DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63  GILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                L
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 242
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG
Sbjct: 243 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGG 302
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 365 DESGPAIVHRKCF 377
           DESGP+IVHRKCF
Sbjct: 363 DESGPSIVHRKCF 375

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/375 (84%), Positives = 341/375 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDE+GP+IVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/376 (84%), Positives = 341/376 (90%)
Query: 2   ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
            D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 1   CDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 62  SKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 121
           SKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKM
Sbjct: 61  SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKM 120
Query: 122 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181
           TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLD 180
Query: 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXX 241
           LAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E               
Sbjct: 181 LAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKS 240
Query: 242 XXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVL 301
             LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+
Sbjct: 241 YELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVM 300
Query: 302 SGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK 361
           SGG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K
Sbjct: 301 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITK 360
Query: 362 GEYDESGPAIVHRKCF 377
            EYDE+GP+IVHRKCF
Sbjct: 361 QEYDEAGPSIVHRKCF 376

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/377 (84%), Positives = 341/377 (90%)
Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEA
Sbjct: 1   MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 60
Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREK 120
Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRL 180
Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXX 240
           DLAGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E              
Sbjct: 181 DLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEK 240
Query: 241 XXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
              LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V
Sbjct: 241 SYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 300
Query: 301 LSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS 360
           +SGG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 301 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 360
Query: 361 KGEYDESGPAIVHRKCF 377
           K EYDE+GP+IVHRKCF
Sbjct: 361 KQEYDEAGPSIVHRKCF 377

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/368 (86%), Positives = 338/368 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 362
Query: 370 AIVHRKCF 377
           +IVHRKCF
Sbjct: 363 SIVHRKCF 370

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/375 (84%), Positives = 340/375 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 2   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 62  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 121
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 181
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 182 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 241
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 242 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 301
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 361
Query: 363 EYDESGPAIVHRKCF 377
           EYDE+GP+IVHRKCF
Sbjct: 362 EYDEAGPSIVHRKCF 376

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/375 (84%), Positives = 340/375 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPAIVHRKCF 377
           EYDE+GP+IVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/373 (84%), Positives = 338/373 (90%)
Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           E+   LVCDNG+G+ KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 2   EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 61
Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIE GI++NWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQI
Sbjct: 62  GILTLKYPIEXGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQI 121
Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAG
Sbjct: 122 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG 181
Query: 185 RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXL 244
           RDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 L
Sbjct: 182 RDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 241
Query: 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG
Sbjct: 242 PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGG 301
Query: 305 STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           +TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EY
Sbjct: 302 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 361
Query: 365 DESGPAIVHRKCF 377
           DE+GP+IVHRKCF
Sbjct: 362 DEAGPSIVHRKCF 374

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/368 (85%), Positives = 337/368 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 123
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 124 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 183
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 184 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 243
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 303
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 363
Query: 370 AIVHRKCF 377
           +IVHRKCF
Sbjct: 364 SIVHRKCF 371

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/375 (85%), Positives = 340/375 (90%), Gaps = 7/375 (1%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTG       KD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTG-------KDSYVGDEAQS 53
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 54  KRGILTLKYPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 113
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 114 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 173
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKLAYVALD+E                
Sbjct: 174 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY 233
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 234 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 293
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TMFPGIADRM++E+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK 
Sbjct: 294 GGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKE 353
Query: 363 EYDESGPAIVHRKCF 377
           EYDESGP+IVHRKCF
Sbjct: 354 EYDESGPSIVHRKCF 368

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/368 (85%), Positives = 336/368 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMV MGQ D+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQGDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 123
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 124 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 183
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 184 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 243
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 244 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 303
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP
Sbjct: 304 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 363
Query: 370 AIVHRKCF 377
           +IVHRKCF
Sbjct: 364 SIVHRKCF 371

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/372 (84%), Positives = 338/372 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPAIVHR 374
           EYDE+GP+IVHR
Sbjct: 361 EYDEAGPSIVHR 372

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/371 (84%), Positives = 337/371 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360
Query: 363 EYDESGPAIVH 373
           EYDE+GP+IVH
Sbjct: 361 EYDEAGPSIVH 371

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/372 (84%), Positives = 337/372 (90%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 2   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 61
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 62  KRGILTLKYPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 121
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 181
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 182 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 241
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 242 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 301
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 302 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 361
Query: 363 EYDESGPAIVHR 374
           EYDE+GP+IVHR
Sbjct: 362 EYDEAGPSIVHR 373

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/363 (87%), Positives = 333/363 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           N PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD
Sbjct: 123 NTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSFTTTAEREIVRD+KEKL YVALD+EQ                LPDGQV
Sbjct: 183 YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+P
Sbjct: 243 ITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 362
Query: 370 AIV 372
           +IV
Sbjct: 363 SIV 365

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/363 (85%), Positives = 333/363 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 362
Query: 370 AIV 372
           +IV
Sbjct: 363 SIV 365

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/363 (85%), Positives = 332/363 (91%), Gaps = 1/363 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 63  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 122 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 181
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 182 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 241
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 242 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 301
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP
Sbjct: 302 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 361
Query: 370 AIV 372
           +IV
Sbjct: 362 SIV 364

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/372 (81%), Positives = 338/372 (90%)
Query: 6   DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRG
Sbjct: 4   EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRG 63
Query: 66  ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125
           ILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIM
Sbjct: 64  ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIM 123
Query: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
           FETFNVPA YV+IQAVLSLY+SGRTTGIVLDSGDGV+H VPIY G++LPHAILR+DLAGR
Sbjct: 124 FETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGR 183
Query: 186 DLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLP 245
           DLTD LMKIL+ERGYSF+TTAEREIVRD+KEKL YVALD+EQ                LP
Sbjct: 184 DLTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELP 243
Query: 246 DGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305
           DGQVITIG ERFR PE LF PS++G+E+AGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+
Sbjct: 244 DGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGT 303
Query: 306 TMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYD 365
           TMFPGIA+RM +EITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYD
Sbjct: 304 TMFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYD 363
Query: 366 ESGPAIVHRKCF 377
           ESGP+IVH KCF
Sbjct: 364 ESGPSIVHHKCF 375

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/372 (81%), Positives = 337/372 (90%)
Query: 6   DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG 65
           ++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRG
Sbjct: 4   EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRG 63
Query: 66  ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 125
           ILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIM
Sbjct: 64  ILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIM 123
Query: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185
           FETFNVPA YV+IQAVLSLY+SGRTTGIVLDSGDG +H VPIY G++LPHAILR+DLAGR
Sbjct: 124 FETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGR 183
Query: 186 DLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLP 245
           DLTD LMKIL+ERGYSF+TTAEREIVRD+KEKL YVALD+EQ                LP
Sbjct: 184 DLTDYLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELP 243
Query: 246 DGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305
           DGQVITIG ERFR PE LF PS++G+E+AGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+
Sbjct: 244 DGQVITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGT 303
Query: 306 TMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYD 365
           TMFPGIA+RM +EITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYD
Sbjct: 304 TMFPGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYD 363
Query: 366 ESGPAIVHRKCF 377
           ESGP+IVH KCF
Sbjct: 364 ESGPSIVHHKCF 375

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/357 (85%), Positives = 326/357 (91%), Gaps = 1/357 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 2   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 62  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 120
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 121 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 180
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 181 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 240
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 241 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 300
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 366
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE
Sbjct: 301 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDE 357

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/355 (85%), Positives = 324/355 (91%), Gaps = 1/355 (0%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 4   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 63
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIE GI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 64  KYPIE-GIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 123 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                 LPDGQV
Sbjct: 183 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 243 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY 364
           GIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EY
Sbjct: 303 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 357

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/363 (82%), Positives = 332/363 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           +YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETF
Sbjct: 63  RYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPA YV+IQAVLSLY+SGRTTGIVLDSGDGV+H VPIY G++LPHAILR+DLAGRDLTD
Sbjct: 123 NVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKIL+ERGYSF+TTAEREIVRD+KEKL YVALD+EQ                LPDGQV
Sbjct: 183 YLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFR PE LF PS++G+E+AGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+TMFP
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIA+RM +EITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGP
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGP 362
Query: 370 AIV 372
           +IV
Sbjct: 363 SIV 365

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/363 (82%), Positives = 331/363 (91%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 3   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVGMGQKDSYVGDEAQSKRGILTL 62
Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           +YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPK+NREKMTQIMFETF
Sbjct: 63  RYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNREKMTQIMFETF 122
Query: 130 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189
           NVPA YV+IQAVLSLY+SGRTTGIVLDSGDG +H VPIY G++LPHAILR+DLAGRDLTD
Sbjct: 123 NVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAILRIDLAGRDLTD 182
Query: 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXXXLPDGQV 249
            LMKIL+ERGYSF+TTAEREIVRD+KEKL YVALD+EQ                LPDGQV
Sbjct: 183 YLMKILSERGYSFSTTAEREIVRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPDGQV 242
Query: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           ITIG ERFR PE LF PS++G+E+AGI +TTYNSIMKCDVD+RK+LYGNIV+SGG+TMFP
Sbjct: 243 ITIGNERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFP 302
Query: 310 GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369
           GIA+RM +EITALAPSSMK+K++APPERKYSVWIGGSILASL+TFQQMWISK EYDESGP
Sbjct: 303 GIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWISKQEYDESGP 362
Query: 370 AIV 372
           +IV
Sbjct: 363 SIV 365

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/375 (81%), Positives = 326/375 (86%), Gaps = 16/375 (4%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGR                VGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGR----------------VGDEAQS 44
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 45  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 104
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 105 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 164
Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXXXXX 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E                
Sbjct: 165 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 224
Query: 243 XLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
            LPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 225 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 284
Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 285 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 344
Query: 363 EYDESGPAIVHRKCF 377
           EYDE+GP+IVHRKCF
Sbjct: 345 EYDEAGPSIVHRKCF 359

>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394

Iteration: 1
 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/387 (45%), Positives = 246/387 (63%), Gaps = 15/387 (3%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FPS+VGRP  R T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPSLVGRPIIRSTTKVGNIEIKDLMVGDEA 61
Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 120 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXX 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL YV  + EQ            
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 240 XXXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI 299
               LPDG++I +G ERF  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 300 VLSGGSTMFPGIADRMSREITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ RE+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361
Query: 349 AS-LSTFQQMWISKGEYDESGPAIVHR 374
           A  +      W+++ EY E G  ++ +
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/387 (45%), Positives = 247/387 (63%), Gaps = 15/387 (3%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEA 61
Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121
Query: 120 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181
Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXXXXXXX 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL YV  + EQ            
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241
Query: 240 XXXXLPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI 299
               LPDG++I +G ERF  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301
Query: 300 VLSGGSTMFPGIADRMSREITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ RE+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361
Query: 349 ASLSTFQ-QMWISKGEYDESGPAIVHR 374
           A +   +   W+++ EY E G  ++ +
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEK 388

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 206/407 (50%), Gaps = 41/407 (10%)
Query: 11  VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQS 62
           V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  
Sbjct: 9   VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIE 68
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   
Sbjct: 69  KPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 127
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALP 174
           +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY + 
Sbjct: 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIG 187
Query: 175 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQXXXXXXX 234
             I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D  +       
Sbjct: 188 SCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDT 247
Query: 235 XXXXXXXXXLPDGQV------ITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKC 287
                         +      I +G ERF  PE+ F P     +    I E     I  C
Sbjct: 248 DGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNC 307
Query: 288 DVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT----------------ALAPSSMKIKV 331
            +D+R+ LY NIVLSGGSTMF     R+ R++                  L P  + ++V
Sbjct: 308 PIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQV 367
Query: 332 VAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIV-HRKCF 377
           +    ++Y+VW GGS+LAS   F Q+  +K +Y+E GP+I  H   F
Sbjct: 368 ITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 209/419 (49%), Gaps = 59/419 (14%)
Query: 9   PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK------- 52
           P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K       
Sbjct: 7   PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSS 65
Query: 53  -------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP 104
                  D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H 
Sbjct: 66  KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHY 125
Query: 105 VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLD 156
            LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+D
Sbjct: 126 FLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVD 185
Query: 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY--SFTTTAEREIVRDM 214
           SGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    S   TAER     +
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----I 240
Query: 215 KEKLAYVALD----YEQXXXXXXXXXXXXXXXXLPDGQVITIGAERFRCPEVLFQPSLIG 270
           KE+  YV  D    + +                      I +G ERF  PE+ F P +  
Sbjct: 241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIAS 300
Query: 271 ME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSRE----------- 318
            +    + E   N +    +D+RK LY NIVLSGGST+F    +R+ R+           
Sbjct: 301 SDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHR 360
Query: 319 ---ITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHR 374
              ++      + + V++   ++ +VW GGS+LA    F     +K +Y+E G +I  R
Sbjct: 361 SEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419

>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 265 QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP 324
           +P     E  G+ +  Y+SIM  DVD+R  L  N+VL+GG++  PG++DR+  E+  + P
Sbjct: 383 KPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP 442
Query: 325 SSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESG 368
            S+K +++      ER+Y  W+GGSIL SL TF Q+W+ K EY+E G
Sbjct: 443 -SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG 488

>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 4/179 (2%)
Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT 68
           +V  NG+    AGF+  + P+ + PS  + R    G    +      +   A+ + G   
Sbjct: 8   VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNXIDAAAEKRNGDEV 67
Query: 69  LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR---EKMTQIM 125
                  G+  NWD +E  W + +  +L+V+PEE P+++T    N K +    E+  ++ 
Sbjct: 68  YTLVDSQGLPYNWDALEXQWRYLYDTQLKVSPEELPLVITXPATNGKPDXAILERYYELA 127
Query: 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           F+  NVP   + I+ +    + G+++  V+D G    +  PI +G  + +A++R    G
Sbjct: 128 FDKLNVPVFQIVIEPLAIALSXGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFGG 186

>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 263 LFQPSLIGMEAAGIHETTYNSIMKCDVD-IRKDLYGNIVLSGGSTMFPGIADRMSREITA 321
           LF+   +G++ A +H     SI  C  D  +K +Y +I++ GG  MF    + +   I  
Sbjct: 472 LFEGKALGLDKAILH-----SIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILN 526
Query: 322 LAPSSMK-----IKVVAPPER---KYSVWIGGSILASLSTFQQMWISKGEYDESG 368
             P S +     + V+  P+    +   W GG++LA L T Q++WI + E+   G
Sbjct: 527 KMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFG 581

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	0.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	0.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	0.0
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	0.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	1e-161
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	3e-89
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score =  764 bits (1975), Expect = 0.0
 Identities = 328/375 (87%), Positives = 354/375 (94%)

Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60

Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120

Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180

Query: 183 AGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY 242
           AGRDLTD LMKILTERGYSF TTAEREIVRD+KEKL YVALD+E E+  A SSS++EKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240

Query: 243 ELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQVITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300

Query: 303 GGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKG 362
           GG+TM+PGIADRM +EITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K 
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQ 360

Query: 363 EYDESGPAIVHRKCF 377
           EYDE+GP+IVHRKCF
Sbjct: 361 EYDEAGPSIVHRKCF 375

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score =  731 bits (1889), Expect = 0.0
 Identities = 179/389 (46%), Positives = 254/389 (65%), Gaps = 15/389 (3%)

Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR--HTGVMVGMGQKDAYVGDEA 60
           D++  + +VCDNGTG VK G+AG + P  +FP++VGRP    T  +  +  KD  VGDEA
Sbjct: 2   DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEA 61

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 119
              R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NRE
Sbjct: 62  SELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNRE 121

Query: 120 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   R
Sbjct: 122 KIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRR 181

Query: 180 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE 239
           LD+AGRD+T  L+K+L  RGY+F  +A+ E VR +KEKL YV  + EQE + A  ++ + 
Sbjct: 182 LDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241

Query: 240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI 299
           +SY LPDG++I +G ERF  PE LFQP LI +E  G+ E  +N+I   D+D R + Y +I
Sbjct: 242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 301

Query: 300 VLSGGSTMFPGIADRMSREITAL-----------APSSMKIKVVAPPERKYSVWIGGSIL 348
           VLSGGSTM+PG+  R+ RE+  L             S  KI++  PP RK+ V++GG++L
Sbjct: 302 VLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVL 361

Query: 349 ASLST-FQQMWISKGEYDESGPAIVHRKC 376
           A +       W+++ EY E G  ++ +  
Sbjct: 362 ADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score =  729 bits (1885), Expect = 0.0
 Identities = 149/417 (35%), Positives = 210/417 (50%), Gaps = 43/417 (10%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------PRHTGVMVGMGQK 52
           MA    +   V D GTG  K G+AG+  P+ + PS +               VM G+   
Sbjct: 1   MAG--RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDL 58

Query: 53  DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
           D ++GDEA  K      K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PL
Sbjct: 59  DFFIGDEAIEKPT-YATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPL 117

Query: 113 NPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHT 164
           N   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H 
Sbjct: 118 NTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHV 177

Query: 165 VPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALD 224
           +P+ EGY +   I  + +AGRD+T  + ++L +R          E  + +KE+ +YV  D
Sbjct: 178 IPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD 237

Query: 225 YEQELE-AAKSSSAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSLIGME-AAGIH 277
             +E        S   K Y   +        I +G ERF  PE+ F P     +    I 
Sbjct: 238 LVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPIS 297

Query: 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT----------------A 321
           E     I  C +D+R+ LY NIVLSGGSTMF     R+ R++                  
Sbjct: 298 EVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGR 357

Query: 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRK-CF 377
           L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E GP+I      F
Sbjct: 358 LKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score =  682 bits (1761), Expect = 0.0
 Identities = 138/426 (32%), Positives = 205/426 (48%), Gaps = 55/426 (12%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR------------------- 41
           MA      P++ DNGTG  K G+AG+DAP  VFP+++                       
Sbjct: 1   MAS--FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASK 58

Query: 42  ---HTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELR 97
              H          D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR
Sbjct: 59  GSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLR 118

Query: 98  VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT------- 150
             PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +       
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178

Query: 151 -TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAERE 209
            TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T  +  +L +R    ++    +
Sbjct: 179 LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS---LK 235

Query: 210 IVRDMKEKLAYVALDYEQELEAAKSSSAVEKS----YELPDGQVITIGAERFRCPEVLFQ 265
               +KE+  YV  D  +E                         I +G ERF  PE+ F 
Sbjct: 236 TAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFN 295

Query: 266 PSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP 324
           P +   +    + E   N +    +D+RK LY NIVLSGGST+F    +R+ R++  +  
Sbjct: 296 PEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVD 355

Query: 325 SSM--------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPA 370
             +               + V++   ++ +VW GGS+LA    F     +K +Y+E G +
Sbjct: 356 ERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGAS 415

Query: 371 IVHRKC 376
           I  R  
Sbjct: 416 IARRYQ 421

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  459 bits (1183), Expect = e-161
 Identities = 80/366 (21%), Positives = 136/366 (37%), Gaps = 37/366 (10%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           +   +++  +V D G+     G++G D P+++ PS+ G+          G K  +     
Sbjct: 17  VYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTA-----DEGNKKIFSEQSI 71

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANRE 119
              R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+
Sbjct: 72  GIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRK 131

Query: 120 KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 179
           K  +++ E     A Y+A  +    +A+GR   +V+D G       PI +G  L  +  R
Sbjct: 132 KSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRR 191

Query: 180 LDLAGRDLTDALMKILTERGY-------------------------SFTTTAEREIVRDM 214
             +AG+ +   + K L  +                            +     R   ++ 
Sbjct: 192 NFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQEC 251

Query: 215 KEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPSLIGMEA 273
           KE L ++      E    + SS  ++S E P  + I    E R+   E LF P    + A
Sbjct: 252 KETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPA 311

Query: 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKI--KV 331
              +    NS +                SG +     +     +E  A++ S+       
Sbjct: 312 ---NWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSA 368

Query: 332 VAPPER 337
             P E 
Sbjct: 369 DTPNET 374

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score =  276 bits (708), Expect = 3e-89
 Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 12/223 (5%)

Query: 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL-MKILTERGYSFTTTAEREIVRDMKEK 217
                       Y     +                  + +   +     +R     + + 
Sbjct: 283 WNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKS 342

Query: 218 LAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIH 277
              V    E+E EA             P         E  + P    +P     E  G+ 
Sbjct: 343 DKKVTPTEEKEQEA-------VSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLA 395

Query: 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP-- 335
           +  Y+SIM  DVD+R  L  N+VL+GG++  PG++DR+  E+  + P S+K +++     
Sbjct: 396 DLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHT 454

Query: 336 -ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377
            ER+Y  W+GGSIL SL TF Q+W+ K EY+E G   +    F
Sbjct: 455 IERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 58/224 (25%)

Query: 181 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEK 240
           +   +D+ D    IL++        ++  +      +L +  L  ++E+        +  
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 241 SYE-LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNS---IMKCDV------- 289
           +Y+ L             +      QPS++        +  YN      K +V       
Sbjct: 90  NYKFL---------MSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 290 DIRKDLY-----GNIVLSGGSTMFPGIADRMSREITALAPS---SMKIKVVAPPERKYSV 341
            +R+ L       N+++ G   +  G         T +A     S K++        + +
Sbjct: 139 KLRQALLELRPAKNVLIDG---V-LGSGK------TWVALDVCLSYKVQCKMD----FKI 184

Query: 342 -WIG-------GSILASLST----FQQMWISKGEYDESGPAIVH 373
            W+         ++L  L          W S+ ++  +    +H
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	100.0
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	100.0
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	100.0
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	100.0
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	100.0
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	100.0
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	100.0
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	100.0
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.93
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	99.91
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.91
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.91
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.88
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.86
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.85
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.84
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.82
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.78
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	99.76
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	99.75
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	99.69
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	99.56
4apw_A	329	ALP12; actin-like protein; 19.70A {Clostridium tet	99.5
3js6_A	355	Uncharacterized PARM protein; partition, segregati	99.45
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	98.98
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	98.96
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	98.64
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	97.77
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	96.96
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	96.82
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	96.41
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	96.3
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	96.27
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	96.26
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	96.09
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	96.03
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	95.89
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	95.8
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	95.79
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	95.78
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	95.52
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	95.45
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	95.24
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	94.33
3djc_A	266	Type III pantothenate kinase; structural genomics,	94.1
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	94.04
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	93.48
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	92.68
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	91.84
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	90.29
3zx3_A	452	Ectonucleoside triphosphate diphosphohydrolase 1;	89.22
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	88.03
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	82.17

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-80  Score=596.32  Aligned_cols=370  Identities=37%  Similarity=0.677  Sum_probs=321.9

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCC----------------------CccccCCCccceecccccc
Q 017124            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT----------------------GVMVGMGQKDAYVGDEAQS   62 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~----------------------~~~~~~~~~~~~vg~~~~~   62 (377)
                      .+.++||||+||+++|+||+|++.|++++||+++++++.                      ..+.+..+.+++||+++..
T Consensus         3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~   82 (427)
T 3dwl_A            3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK   82 (427)
T ss_dssp             CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred             CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence            367899999999999999999999999999999998753                      1122445668899999987


Q ss_pred             ccc-cceeeceecCCccCCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhh
Q 017124           63 KRG-ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV  141 (377)
Q Consensus        63 ~~~-~~~~~~p~~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~  141 (377)
                      ... ...+++|+++|.|.|||.+|++|+|+|++.|++++.++|+++++|++++...|+.+++++||.++++++++..+++
T Consensus        83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v  162 (427)
T 3dwl_A           83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV  162 (427)
T ss_dssp             THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred             CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence            765 6789999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC--------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHH
Q 017124          142 LSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRD  213 (377)
Q Consensus       142 ~a~~~~g--------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  213 (377)
                      +|+|++|        .++|+|||+|+++|+|+||++|+++.++..++++||++++++|.++|.+++..   ..+.+.+++
T Consensus       163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~  239 (427)
T 3dwl_A          163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAER  239 (427)
T ss_dssp             HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHH
T ss_pred             HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHH
Confidence            9999998        68999999999999999999999999999999999999999999999877665   446688999


Q ss_pred             HHHhcceeecCHHHHHHHhccCCCcceeEEc--CCCc--EEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCC
Q 017124          214 MKEKLAYVALDYEQELEAAKSSSAVEKSYEL--PDGQ--VITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCD  288 (377)
Q Consensus       214 ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~  288 (377)
                      +|+++||++.|++++++...........|.+  |+|.  .+.++.+||+++|+||+|++++.+ ..+|+++|.++|.+||
T Consensus       240 IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~  319 (427)
T 3dwl_A          240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSP  319 (427)
T ss_dssp             HHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSC
T ss_pred             HHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCC
Confidence            9999999999998887765433333456667  7887  889999999999999999999988 4899999999999999


Q ss_pred             hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcC--------------CCCceEEEECCCCCccccchhhhhhhccccc
Q 017124          289 VDIRKDLYGNIVLSGGSTMFPGIADRMSREITALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTF  354 (377)
Q Consensus       289 ~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~  354 (377)
                      +|+|+.|++|||||||+|++|||.+||++||+.+.              |...+++|..++++.+++|+|||++|++++|
T Consensus       320 ~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f  399 (427)
T 3dwl_A          320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF  399 (427)
T ss_dssp             HHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccch
Confidence            99999999999999999999999999999999887              4566799999999999999999999999999


Q ss_pred             ccccccHHHHhhcCCcccccccC
Q 017124          355 QQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       355 ~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      +++||||+||+|+|++|++||++
T Consensus       400 ~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          400 GSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             HHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             hheeEEHHHHhhhChHhheeccc
Confidence            99999999999999999999974

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-78  Score=582.48  Aligned_cols=366  Identities=31%  Similarity=0.569  Sum_probs=330.6

Q ss_pred             CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccc-cccccccceeeceecCCccCCH
Q 017124            3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE-AQSKRGILTLKYPIEHGIVSNW   81 (377)
Q Consensus         3 ~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~-~~~~~~~~~~~~p~~~g~i~d~   81 (377)
                      .+++.++||||+||+++|+||+|++.|++++||+++++++..      .++.+||++ +...++...+++|+++|.|.||
T Consensus        19 ggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw   92 (498)
T 3qb0_A           19 GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW   92 (498)
T ss_dssp             CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred             CCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence            467889999999999999999999999999999999987542      456789997 5555677889999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCC-cEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCC
Q 017124           82 DDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG  160 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~~~~~~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~  160 (377)
                      |.++.+|+|+|.+.|++++.++ ||++++|++++...|+.+++++||.+++++++++.+++||+|++|.++|+|||+|++
T Consensus        93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g  172 (498)
T 3qb0_A           93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD  172 (498)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred             HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence            9999999999988899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc------------------CCCCcch------h-HHHHHHHHH
Q 017124          161 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER------------------GYSFTTT------A-EREIVRDMK  215 (377)
Q Consensus       161 ~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~------------------~~~~~~~------~-~~~~~~~ik  215 (377)
                      .|+|+||++|+++.++..++++||++++++|.++|.++                  ++.+...      . +.+.++++|
T Consensus       173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK  252 (498)
T 3qb0_A          173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK  252 (498)
T ss_dssp             CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred             cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999754                  2333221      2 445899999


Q ss_pred             HhcceeecC--HHHHHHHhccCCCcceeEEcCCCcEEeeCCc-cccccccCCCCccCCC---------------------
Q 017124          216 EKLAYVALD--YEQELEAAKSSSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPSLIGM---------------------  271 (377)
Q Consensus       216 ~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-~~~~~e~lf~p~~~~~---------------------  271 (377)
                      +++|||+.+  ++++...  ......+.|++|||+.|.++.+ ||.+||.||+|++++.                     
T Consensus       253 E~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~  330 (498)
T 3qb0_A          253 ETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP  330 (498)
T ss_dssp             HHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred             HhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence            999999987  4443222  1234578999999999999999 9999999999987643                     


Q ss_pred             -----------------------------------------------------------CCCChHHHHHHHHhcCChhHH
Q 017124          272 -----------------------------------------------------------EAAGIHETTYNSIMKCDVDIR  292 (377)
Q Consensus       272 -----------------------------------------------------------~~~~l~~~I~~~i~~~~~~~~  292 (377)
                                                                                 +..||+++|.++|.+||.|+|
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r  410 (498)
T 3qb0_A          331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR  410 (498)
T ss_dssp             CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence                                                                       567899999999999999999


Q ss_pred             HHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC---CCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017124          293 KDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGP  369 (377)
Q Consensus       293 ~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~---~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~  369 (377)
                      +.|++||||+||+|++|||.+||++||+.+.| ..+++|+.+   +++.+++|+|||++|++.+|+++||||+||+|+|+
T Consensus       411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~  489 (498)
T 3qb0_A          411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGV  489 (498)
T ss_dssp             HHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred             HHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCc
Confidence            99999999999999999999999999999999 789999988   78999999999999999999999999999999999


Q ss_pred             -cccccccC
Q 017124          370 -AIVHRKCF  377 (377)
Q Consensus       370 -~~~~~k~~  377 (377)
                       .||+|||.
T Consensus       490 ~~iv~~kc~  498 (498)
T 3qb0_A          490 ERLLNDRFR  498 (498)
T ss_dssp             HHHHHHTTC
T ss_pred             HhhccccCc
Confidence             89999993

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=100.00  E-value=2.2e-76  Score=562.61  Aligned_cols=374  Identities=87%  Similarity=1.393  Sum_probs=342.3

Q ss_pred             CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017124            4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +++.++||||+||+++|+||++++.|+.++||+++++++.....+.+.++++||+++....+...+++|+++|.|.||+.
T Consensus         2 ~~~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~   81 (375)
T 2fxu_A            2 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD   81 (375)
T ss_dssp             --CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHH
T ss_pred             CCCCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHH
Confidence            46789999999999999999999999999999999988766555555677899999988877789999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceE
Q 017124           84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH  163 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~  163 (377)
                      ++.+|+++|++.|++++.++++++++|++++..+|+.+++++||.+|+++++++++|+||+|++|.++++|||+|+++|+
T Consensus        82 ~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~  161 (375)
T 2fxu_A           82 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH  161 (375)
T ss_dssp             HHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEE
T ss_pred             HHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceE
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017124          164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE  243 (377)
Q Consensus       164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~  243 (377)
                      |+||++|+++.++..++++||++++++|.++|.++++++....+.+.++++|+++|++..++.++++...........|.
T Consensus       162 v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~  241 (375)
T 2fxu_A          162 NVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE  241 (375)
T ss_dssp             EEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred             EeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEE
Confidence            99999999998888899999999999999999988888876677889999999999999998877766554455678999


Q ss_pred             cCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcC
Q 017124          244 LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALA  323 (377)
Q Consensus       244 ~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~  323 (377)
                      +|||+.+.++.+||.++|.||+|++++.+..+|.++|.++|.+||.++|+.+++||+||||+|++|||.+||+++|..+.
T Consensus       242 lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~  321 (375)
T 2fxu_A          242 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  321 (375)
T ss_dssp             CTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                      |...+++++.+++|.+++|+||+++|++.+|+++||||+||+|+|+++++||||
T Consensus       322 p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~  375 (375)
T 2fxu_A          322 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF  375 (375)
T ss_dssp             CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred             CCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence            988889999999999999999999999999999999999999999999999997

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=100.00  E-value=1.5e-75  Score=559.59  Aligned_cols=372  Identities=48%  Similarity=0.892  Sum_probs=164.5

Q ss_pred             CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc-c-cCCCccceeccccccccccceeeceecCCccCC
Q 017124            3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM-V-GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN   80 (377)
Q Consensus         3 ~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~-~-~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d   80 (377)
                      ...+.++||||+||+++|+||+|++.|++++||+++++++.... . +...+++++|+++....+...+++|+++|.|.|
T Consensus         2 ~~~~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~d   81 (394)
T 1k8k_B            2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRN   81 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEec
Confidence            35577899999999999999999999999999999988765432 1 233467899999988877788999999999999


Q ss_pred             HHHHHHHHHHhh-cccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCC
Q 017124           81 WDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGD  159 (377)
Q Consensus        81 ~~~~~~~~~~~~-~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~  159 (377)
                      |+.++.+|+|+| ++.|++++.++++++++|++++...|+.+++++||.+++++++++++|+||+|++|.++++|||+|+
T Consensus        82 wd~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~  161 (394)
T 1k8k_B           82 WDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGD  161 (394)
T ss_dssp             ------------------------------------------------------------------------CCEEEECS
T ss_pred             HHHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCC
Confidence            999999999999 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017124          160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE  239 (377)
Q Consensus       160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~  239 (377)
                      ++|+|+||++|+++.++..++++||++++++|.++|.++++++.+..+.+.++++|+++|++..++..+.+.........
T Consensus       162 g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~  241 (394)
T 1k8k_B          162 GVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLV  241 (394)
T ss_dssp             SCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTC
T ss_pred             CceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCc
Confidence            99999999999999988899999999999999999999888887666788999999999999988877765543344456


Q ss_pred             eeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017124          240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI  319 (377)
Q Consensus       240 ~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL  319 (377)
                      ..|.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.++|+.+++||+||||+|++|||.+||++||
T Consensus       242 ~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el  321 (394)
T 1k8k_B          242 ESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL  321 (394)
T ss_dssp             EEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred             eEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-----------CCCceEEEECCCCCccccchhhhhhhcccccc-cccccHHHHhhcCCccccc
Q 017124          320 TALA-----------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPAIVHR  374 (377)
Q Consensus       320 ~~~~-----------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~-~~~itr~~y~e~G~~~~~~  374 (377)
                      ..+.           |...++++..+++|.+++|+||+++|++.+|+ ++||||+||+|+|+++++|
T Consensus       322 ~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~  388 (394)
T 1k8k_B          322 KQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK  388 (394)
T ss_dssp             HHHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred             HHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence            9887           77778999989999999999999999999999 9999999999999999987

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.1e-71  Score=559.01  Aligned_cols=370  Identities=21%  Similarity=0.390  Sum_probs=293.6

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc----------------------------------------
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM----------------------------------------   46 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~----------------------------------------   46 (377)
                      +++||||+||+++|+|||||+.|+ .+|+++++++.....                                        
T Consensus        15 ~~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (593)
T 4fo0_A           15 NFIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN   93 (593)
T ss_dssp             GGEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             CCEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence            457999999999999999999997 569999987532110                                        


Q ss_pred             ---------------------------------ccCCCccceecccccc--ccccceeeceecCC-----------ccCC
Q 017124           47 ---------------------------------VGMGQKDAYVGDEAQS--KRGILTLKYPIEHG-----------IVSN   80 (377)
Q Consensus        47 ---------------------------------~~~~~~~~~vg~~~~~--~~~~~~~~~p~~~g-----------~i~d   80 (377)
                                                       .....++++||++|+.  ..+.+.++|||++|           .+.+
T Consensus        94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~  173 (593)
T 4fo0_A           94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAV  173 (593)
T ss_dssp             SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHH
T ss_pred             ccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcC
Confidence                                             0112356899999975  35668999999999           4679


Q ss_pred             HHHHHHHHHHhhcccccCCCCC---CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeC
Q 017124           81 WDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS  157 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi  157 (377)
                      |+++|.+|+|+|++.|++++++   +|+|+++|+++++..|+.+++++||.|+++++++..+++||+|++|.+||||||+
T Consensus       174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDi  253 (593)
T 4fo0_A          174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDV  253 (593)
T ss_dssp             HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEe
Confidence            9999999999999999998765   9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCc-----chhHHHHHHHHHHhcceeecCHHHHH---
Q 017124          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFT-----TTAEREIVRDMKEKLAYVALDYEQEL---  229 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~-----~~~~~~~~~~ik~~~~~v~~~~~~~~---  229 (377)
                      |++.|+|+||+||+++.++..++++||++++++|.++|.++++.+.     ...+++.++++|+++|+++.++..+.   
T Consensus       254 G~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~  333 (593)
T 4fo0_A          254 GDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHE  333 (593)
T ss_dssp             CSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEE
T ss_pred             CCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhhhhh
Confidence            9999999999999999999999999999999999999999887654     35678999999999999986642110   


Q ss_pred             ----------------------HH----------------------------------------------hccCCCccee
Q 017124          230 ----------------------EA----------------------------------------------AKSSSAVEKS  241 (377)
Q Consensus       230 ----------------------~~----------------------------------------------~~~~~~~~~~  241 (377)
                                            ..                                              ..........
T Consensus       334 ~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (593)
T 4fo0_A          334 FQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKS  413 (593)
T ss_dssp             EEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC----------------------------------
T ss_pred             hhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccccccc
Confidence                                  00                                              0000112345


Q ss_pred             EEcCCCcEEeeCCccccccccCCCCccC--------------------------------CCCCCChHHHHHHHHhcCC-
Q 017124          242 YELPDGQVITIGAERFRCPEVLFQPSLI--------------------------------GMEAAGIHETTYNSIMKCD-  288 (377)
Q Consensus       242 ~~~~~~~~i~v~~~~~~~~e~lf~p~~~--------------------------------~~~~~~l~~~I~~~i~~~~-  288 (377)
                      +..|++..+.++.+++.++|.+|.|...                                +.+..+|+++|.++|.+|+ 
T Consensus       414 ~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~  493 (593)
T 4fo0_A          414 ASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSS  493 (593)
T ss_dssp             ---------------------------------------------------------CHHHHSCCCHHHHHHHHHHTCSS
T ss_pred             ccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCc
Confidence            6788899999999999999999998542                                1235689999999999998 


Q ss_pred             hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCc-----eEEEECCC---CCccccchhhhhhhccccccccccc
Q 017124          289 VDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSM-----KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIS  360 (377)
Q Consensus       289 ~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~-----~v~v~~~~---~~~~~~w~Gasi~a~l~~~~~~~it  360 (377)
                      .|+|+.|++||+||||+|++|||.+||++||+.+.|...     +++|+.+|   +|.+++|+|||++|+|++|.++|||
T Consensus       494 ~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wIt  573 (593)
T 4fo0_A          494 DDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIY  573 (593)
T ss_dssp             HHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEE
T ss_pred             HHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeEC
Confidence            699999999999999999999999999999999998643     58999886   7999999999999999999999999


Q ss_pred             HHHHhhcCCcccccccC
Q 017124          361 KGEYDESGPAIVHRKCF  377 (377)
Q Consensus       361 r~~y~e~G~~~~~~k~~  377 (377)
                      |+||+|+|++||++||+
T Consensus       574 k~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          574 QREWQRFGVRMLRERAA  590 (593)
T ss_dssp             HHHHHHHTTHHHHHHCS
T ss_pred             HHHHHhhCcHHHhhcCC
Confidence            99999999999999995

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=100.00  E-value=3.6e-70  Score=527.57  Aligned_cols=370  Identities=39%  Similarity=0.690  Sum_probs=331.8

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc--------cccCCCccceeccccccccccceeeceecCC
Q 017124            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHG   76 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g   76 (377)
                      .+.++||||+||+++|+||++++.|+.++||+++++++...        ..+....+++||+++....+ ..+++|+++|
T Consensus         3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~-~~~~~pi~~G   81 (418)
T 1k8k_A            3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPT-YATKWPIRHG   81 (418)
T ss_dssp             CCSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTT-SEEECCEETT
T ss_pred             CCCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCC-CEEeccccCC
Confidence            36689999999999999999999999999999998876421        22223346899999987753 7899999999


Q ss_pred             ccCCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh---------c
Q 017124           77 IVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA---------S  147 (377)
Q Consensus        77 ~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~---------~  147 (377)
                      .+.||+.++.+|+++|.+.|+++++++++++++|++++...|+.+.+++||.+|+++++++++|+||+|+         .
T Consensus        82 ~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~  161 (418)
T 1k8k_A           82 IVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER  161 (418)
T ss_dssp             EESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC
T ss_pred             EECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC
Confidence            9999999999999999888999888999999999999999999999999999999999999999999998         4


Q ss_pred             CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHH
Q 017124          148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQ  227 (377)
Q Consensus       148 g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~  227 (377)
                      +. +++|||+|+++|+|+||++|.++.++..+.++||++++++|.++|.+++..+....+.+.++++|+++|++..++.+
T Consensus       162 ~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~  240 (418)
T 1k8k_A          162 TL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK  240 (418)
T ss_dssp             CC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred             CC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence            55 89999999999999999999999888899999999999999999998888777667789999999999999988877


Q ss_pred             HHHHhccC-CCcceeEEcCCCc-----EEeeCCccccccccCCCCccCCCCC-CChHHHHHHHHhcCChhHHHHhhcCce
Q 017124          228 ELEAAKSS-SAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSLIGMEA-AGIHETTYNSIMKCDVDIRKDLYGNIV  300 (377)
Q Consensus       228 ~~~~~~~~-~~~~~~~~~~~~~-----~i~v~~~~~~~~e~lf~p~~~~~~~-~~l~~~I~~~i~~~~~~~~~~l~~nIv  300 (377)
                      +.++.... ......|.+||+.     .+.++.+||.++|.||+|++++.+. .+|.++|.++|.+||.++|+.+++||+
T Consensus       241 e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~Iv  320 (418)
T 1k8k_A          241 EFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIV  320 (418)
T ss_dssp             HHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEE
T ss_pred             HHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceE
Confidence            66543221 2234689999988     8999999999999999999887764 799999999999999999999999999


Q ss_pred             eccCCcCCcChHHHHHHHHHhcC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHH
Q 017124          301 LSGGSTMFPGIADRMSREITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEY  364 (377)
Q Consensus       301 l~GG~s~i~gl~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y  364 (377)
                      ||||+|++|||.+||+++|..+.                |...++++..+++|.+++|+|||++|++.+|.++||||+||
T Consensus       321 L~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey  400 (418)
T 1k8k_A          321 LSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY  400 (418)
T ss_dssp             EESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHH
T ss_pred             EeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHH
Confidence            99999999999999999999875                56677899999999999999999999999999999999999


Q ss_pred             hhcCCccccccc
Q 017124          365 DESGPAIVHRKC  376 (377)
Q Consensus       365 ~e~G~~~~~~k~  376 (377)
                      +|+|+++++|||
T Consensus       401 ~e~G~~~~~~~~  412 (418)
T 1k8k_A          401 EEIGPSICRHNP  412 (418)
T ss_dssp             HHHCGGGGGCCC
T ss_pred             hhhCHHHHhhhc
Confidence            999999999976

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=100.00  E-value=2.3e-58  Score=448.28  Aligned_cols=362  Identities=22%  Similarity=0.421  Sum_probs=302.1

Q ss_pred             CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc---------c-----cc----------------------
Q 017124            5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------M-----VG----------------------   48 (377)
Q Consensus         5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~---------~-----~~----------------------   48 (377)
                      +...+|||.+||.++|+|+|.|..|. .+|++++++.....         .     .+                      
T Consensus        38 ~~~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~k  116 (655)
T 4am6_A           38 DPTATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYK  116 (655)
T ss_dssp             CGGGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence            34678999999999999999999997 77999886431100         0     00                      


Q ss_pred             -----------------------------------CCCccceeccccccc-cccceeeceecCCccC----C-------H
Q 017124           49 -----------------------------------MGQKDAYVGDEAQSK-RGILTLKYPIEHGIVS----N-------W   81 (377)
Q Consensus        49 -----------------------------------~~~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~----d-------~   81 (377)
                                                         ...++++||++|..+ .+.+.+++|+++|.|.    |       |
T Consensus       117 ~r~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~W  196 (655)
T 4am6_A          117 RKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELI  196 (655)
T ss_dssp             CCCSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHH
T ss_pred             CCCCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHhhCCccCeEEeccccCCEecccCCccccccccH
Confidence                                               012477899999874 6678999999999998    8       9


Q ss_pred             HHHHHHHHHhhcc-cccCCCC---CCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC-CceEEEEe
Q 017124           82 DDMEKIWHHTFYN-ELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-RTTGIVLD  156 (377)
Q Consensus        82 ~~~~~~~~~~~~~-~L~~~~~---~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~~~lVVD  156 (377)
                      +.++.+|+|+|.+ .|+++++   ++|+++++|++++...|+.+++++||.|++++++++.++++|+|++| .++|||||
T Consensus       197 D~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVVD  276 (655)
T 4am6_A          197 SDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVN  276 (655)
T ss_dssp             HHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEE
T ss_pred             HHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEEc
Confidence            9999999999974 8999886   79999999999999999999999999999999999999999999999 69999999


Q ss_pred             CCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCC-----CCcchhHHHHHHHHHHhccee-ecCHHHHHH
Q 017124          157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY-----SFTTTAEREIVRDMKEKLAYV-ALDYEQELE  230 (377)
Q Consensus       157 iG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----~~~~~~~~~~~~~ik~~~~~v-~~~~~~~~~  230 (377)
                      +|++.|+|+||++|+++.++..++++||++++++|.++|.++++     ++.+..+.+++++||+++||| ..|+.    
T Consensus       277 iG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~----  352 (655)
T 4am6_A          277 IGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVA----  352 (655)
T ss_dssp             ECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC----
T ss_pred             CCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchh----
Confidence            99999999999999999999999999999999999999999886     567778899999999999999 34431    


Q ss_pred             HhccCCCcceeE--EcCCC----cEEeeCCccccccccCCCCccCCC---------------------------------
Q 017124          231 AAKSSSAVEKSY--ELPDG----QVITIGAERFRCPEVLFQPSLIGM---------------------------------  271 (377)
Q Consensus       231 ~~~~~~~~~~~~--~~~~~----~~i~v~~~~~~~~e~lf~p~~~~~---------------------------------  271 (377)
                            .....+  ..|++    ..+.++.|||++||+||.|.+++.                                 
T Consensus       353 ------~q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~  426 (655)
T 4am6_A          353 ------VQLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLS  426 (655)
T ss_dssp             ------SEEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHH
T ss_pred             ------hhhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccchh
Confidence                  112222  33543    468899999999999999876410                                 


Q ss_pred             ----------------------------------------------CCCChHHHHHHHHhc-C---ChhHHHHhhcCcee
Q 017124          272 ----------------------------------------------EAAGIHETTYNSIMK-C---DVDIRKDLYGNIVL  301 (377)
Q Consensus       272 ----------------------------------------------~~~~l~~~I~~~i~~-~---~~~~~~~l~~nIvl  301 (377)
                                                                    ...+|.++|.++|.. |   +...-+++++||++
T Consensus       427 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nili  506 (655)
T 4am6_A          427 QFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILI  506 (655)
T ss_dssp             HHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEE
T ss_pred             HHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEE
Confidence                                                          014788899999873 2   44444599999999


Q ss_pred             ccCCcCCcChHHHHHHHHHhcCC---------------------------------------------------------
Q 017124          302 SGGSTMFPGIADRMSREITALAP---------------------------------------------------------  324 (377)
Q Consensus       302 ~GG~s~i~gl~~rl~~eL~~~~~---------------------------------------------------------  324 (377)
                      |||+|+||||...|...|.-.-|                                                         
T Consensus       507 vGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  586 (655)
T 4am6_A          507 VGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQH  586 (655)
T ss_dssp             ESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHH
T ss_pred             EcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhh
Confidence            99999999998777766643111                                                         


Q ss_pred             ----------CCceEEEECCCCC---ccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017124          325 ----------SSMKIKVVAPPER---KYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF  377 (377)
Q Consensus       325 ----------~~~~v~v~~~~~~---~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~  377 (377)
                                ...+|+|..+|.+   .+.+|+|||++|++.+|.++||||+||+|.|++|+++||+
T Consensus       587 ~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~  652 (655)
T 4am6_A          587 QNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI  652 (655)
T ss_dssp             HHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred             hhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence                      0134788888865   8899999999999999999999999999999999999995

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=100.00  E-value=1.3e-36  Score=285.77  Aligned_cols=307  Identities=16%  Similarity=0.210  Sum_probs=238.1

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHH
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~   83 (377)
                      .+|+||+||+++++|+.++. |...+||+++.+.+.       .+.+++|++|....    ....+.+|+++|.+.+|+.
T Consensus         4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~   75 (344)
T 1jce_A            4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV   75 (344)
T ss_dssp             CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred             ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCC-------CcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHH
Confidence            68999999999999998765 666789999876531       23457999987653    2345678999999999999


Q ss_pred             HHHHHHHhhcccccCC-CCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeC
Q 017124           84 MEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDS  157 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~~-~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi  157 (377)
                      .+++|.+++.+..... ....++++++|+.++..+|+.+.+. ++.+|++.+.++++|+||+++++.     .+.+|||+
T Consensus        76 ~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDi  154 (344)
T 1jce_A           76 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDI  154 (344)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEE
T ss_pred             HHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEe
Confidence            9999999984433322 4468899999999999999988885 599999999999999999999986     68999999


Q ss_pred             CCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc-CCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCC
Q 017124          158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSS  236 (377)
Q Consensus       158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~  236 (377)
                      |+++|+++++..|.++  .....++||+++++.|.+++.++ +..+    ..+.+|++|++++....+...+        
T Consensus       155 Gggttdvsv~~~~~~~--~~~~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~~K~~l~~~~~~~~~~--------  220 (344)
T 1jce_A          155 GGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETYRVAI----GERTAERVKIEIGNVFPSKEND--------  220 (344)
T ss_dssp             CSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHHCEEC----CHHHHHHHHHHHCBCSCCHHHH--------
T ss_pred             CCCeEEEEEEEcCCEE--eeCCCCccChhHHHHHHHHHHHHhCccc----CHHHHHHHHHHHhccCccccCC--------
Confidence            9999999999999887  45678999999999999998754 2222    3467999999999875443211        


Q ss_pred             CcceeEE-----cCCCc--EEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhh-cCceeccCCcCC
Q 017124          237 AVEKSYE-----LPDGQ--VITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLY-GNIVLSGGSTMF  308 (377)
Q Consensus       237 ~~~~~~~-----~~~~~--~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~-~nIvl~GG~s~i  308 (377)
                        ...+.     +.+|.  .+.++.+++.   .+|+|.+     ..+.+.|.++|.+++.+.+..++ ++|+||||+|++
T Consensus       221 --~~~~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~  290 (344)
T 1jce_A          221 --ELETTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLL  290 (344)
T ss_dssp             --HCEEEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCS
T ss_pred             --cceEEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccc
Confidence              01222     22453  3444444443   2344421     23788889999999988888888 799999999999


Q ss_pred             cChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc-cccc
Q 017124          309 PGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL-STFQ  355 (377)
Q Consensus       309 ~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~  355 (377)
                      |||.++|++++..        ++..+++|.+++|.||++++.. +.|+
T Consensus       291 p~l~~~l~~~~~~--------~v~~~~~p~~ava~Gaa~~a~~~~~~~  330 (344)
T 1jce_A          291 RGLDTLLQKETGI--------SVIRSEEPLTAVAKGAGMVLDKVNILK  330 (344)
T ss_dssp             BTHHHHHHHHHSS--------CEEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred             hHHHHHHHHHHCC--------CccccCChHHHHHHHHHHHHhChHHHH
Confidence            9999999999942        2444678899999999999984 5553

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.93  E-value=1.1e-26  Score=228.57  Aligned_cols=297  Identities=17%  Similarity=0.217  Sum_probs=200.2

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCC--------CCcceeecCCCCccccCCCccceecccccccc-----ccceeec---
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR-----GILTLKY---   71 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~--------~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~---   71 (377)
                      .+|.||+||++++++++.+..|..+        +||+++..          ....++|++|....     ....+++   
T Consensus         3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg   72 (509)
T 2v7y_A            3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK----------NGERLVGEVAKRQAITNPNTIISIKRHMG   72 (509)
T ss_dssp             CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES----------SSSEEESHHHHTTTTTCSSEEECGGGTTT
T ss_pred             CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC----------CCcEEECHHHHHhHHhCCCcHHHHHHhcC
Confidence            5899999999999999987767654        67777651          23467898875431     1122333   


Q ss_pred             -eec---CCccCCH-HHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhh
Q 017124           72 -PIE---HGIVSNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS  143 (377)
Q Consensus        72 -p~~---~g~i~d~-~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a  143 (377)
                       |+.   +|.-.+. +....+++++..   +.++  .....+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||
T Consensus        73 ~p~~~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~~~qr~a~~~a~-~~AGl~~~~li~Ep~AA  149 (509)
T 2v7y_A           73 TDYKVEIEGKQYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFNDAQRQATKDAG-RIAGLEVERIINEPTAA  149 (509)
T ss_dssp             SCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHH
T ss_pred             CCcEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecCHHHH
Confidence             555   5642222 222333333321   1222  23468999999999999999888865 88999999999999999


Q ss_pred             hhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh----
Q 017124          144 LYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA----  206 (377)
Q Consensus       144 ~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~----  206 (377)
                      +++++.     .+.+|+|+|+++++++.+.  +|.. +.......++||.++++.|.+++.++     +.++....    
T Consensus       150 Alay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~  229 (509)
T 2v7y_A          150 ALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQ  229 (509)
T ss_dssp             HHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHH
T ss_pred             HHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            999875     4789999999999999876  3543 22233456899999999999888653     44443211    


Q ss_pred             -HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC---cEEeeCCccccccccCCCCccCCCCCCCh
Q 017124          207 -EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG---QVITIGAERFRCPEVLFQPSLIGMEAAGI  276 (377)
Q Consensus       207 -~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~i~v~~~~~~~~e~lf~p~~~~~~~~~l  276 (377)
                       -.+.+|++|+.++...                ...+.+|      +|   ..+.++.+.|.   .+|.|-+     ..+
T Consensus       230 ~l~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~~~~~~itr~~fe---~l~~~~~-----~~i  285 (509)
T 2v7y_A          230 RLKDAAEKAKKELSGVT----------------QTQISLPFISANENGPLHLEMTLTRAKFE---ELSAHLV-----ERT  285 (509)
T ss_dssp             HHHHHHHHHHHHTTTCS----------------EEEEEEEEEEEETTEEEEEEEEEEHHHHH---HHTHHHH-----HTT
T ss_pred             HHHHHHHHHHHhcCCCC----------------cEEEEEeccccCCCCCeeEEEEEEHHHHH---HHHHHHH-----HHH
Confidence             1356777887776431                1122222      22   12233333332   3333311     126


Q ss_pred             HHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       277 ~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+.|.++|..+.  +....+++|+|+||+|++|++.++|++.+..        .+..+.+|+.++|.||+++|..
T Consensus       286 ~~~i~~~L~~a~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~aVa~Gaa~~a~~  350 (509)
T 2v7y_A          286 MGPVRQALQDAG--LTPADIDKVILVGGSTRIPAVQEAIKRELGK--------EPHKGVNPDEVVAIGAAIQGGV  350 (509)
T ss_dssp             HHHHHHHHHHHT--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CChhHCcEEEEECCcccChHHHHHHHHHhCC--------CcCcCCCchhhhHhhHHHHHHH
Confidence            777788887664  2345678999999999999999999998842        2345678999999999999864

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=99.91  E-value=4.6e-24  Score=193.61  Aligned_cols=244  Identities=17%  Similarity=0.158  Sum_probs=180.2

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHH
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK   86 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~   86 (377)
                      +-.++||+||.++|+.+..++. .     .++                 .+         .....|+++|.+.||+..+.
T Consensus        28 ~~~~gIDiGS~s~k~vi~~~~~-~-----~l~-----------------~~---------~~~~~~l~~g~i~d~~~~~~   75 (272)
T 3h1q_A           28 PYKVGVDLGTADIVLVVTDQEG-I-----PVA-----------------GA---------LKWASVVKDGLVVDYIGAIQ   75 (272)
T ss_dssp             CCEEEEECCSSEEEEEEECTTC-C-----EEE-----------------EE---------EEECCCCBTTBCTTHHHHHH
T ss_pred             CEEEEEEcccceEEEEEECCCC-c-----EEE-----------------EE---------eecccccCCCEEEcHHHHHH
Confidence            4578999999999998853321 1     011                 11         11236889999999999999


Q ss_pred             HHHHhhcccccC-CCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEE
Q 017124           87 IWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV  165 (377)
Q Consensus        87 ~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~  165 (377)
                      +|++++...... ......++++.|..+....++. ++.+++.+|++...+..++.|++++++..+++|||+|+++|+++
T Consensus        76 ~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~-~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~  154 (272)
T 3h1q_A           76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEA-CGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIA  154 (272)
T ss_dssp             HHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTH-HHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEE
T ss_pred             HHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHH-HHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEE
Confidence            999997543332 2233567888888777666664 44567999999999999999999999999999999999999999


Q ss_pred             EeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC
Q 017124          166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP  245 (377)
Q Consensus       166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  245 (377)
                      ++.+|.++  .....++||.++++.+.+.+.         .+.+.++++|++++.-     ++.+..             
T Consensus       155 ~~~~g~~~--~~~~~~~Gg~~~~~~l~~~l~---------~~~~~ae~~k~~~~~~-----~~~~~~-------------  205 (272)
T 3h1q_A          155 VIEKGKIT--ATFDEPTGGTHLSLVLAGSYK---------IPFEEAETIKKDFSRH-----REIMRV-------------  205 (272)
T ss_dssp             EEETTEEE--EECCBSCCHHHHHHHHHHHHT---------CCHHHHHHHHHSSTTH-----HHHHHH-------------
T ss_pred             EEECCEEE--EEecCCCcHHHHHHHHHHHhC---------CCHHHHHHHHHhcCCH-----HHHHHH-------------
Confidence            99999988  456789999999999998873         1346688899887621     111100             


Q ss_pred             CCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCC
Q 017124          246 DGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPS  325 (377)
Q Consensus       246 ~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~  325 (377)
                                    .+.++.         .+.+.|.+.+.+++      ..++|+|+||+|++|||.++|+++|..    
T Consensus       206 --------------~~~~~~---------~i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l~~----  252 (272)
T 3h1q_A          206 --------------VRPVIE---------KMALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFLGK----  252 (272)
T ss_dssp             --------------HHHHHH---------HHHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHHSS----
T ss_pred             --------------HHHHHH---------HHHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHhCC----
Confidence                          011111         26677777777775      235999999999999999999999932    


Q ss_pred             CceEEEECCCCCccccchhhhhhh
Q 017124          326 SMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       326 ~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                          ++..+++|+++.|+||+++|
T Consensus       253 ----~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          253 ----EVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             ----CCBCCSSGGGHHHHHHHTTC
T ss_pred             ----CccccCChHHHHHHHHHhcC
Confidence                34456789999999999875

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.91  E-value=8.1e-25  Score=208.33  Aligned_cols=304  Identities=16%  Similarity=0.172  Sum_probs=194.8

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCC--------CCcceeecCCCCccccCCCccceecccccccc------ccceee---
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK---   70 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~--------~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~---   70 (377)
                      ..|.||+||+++.+++..+..|..+        +||.++...+         ...++|.++....      ....++   
T Consensus         3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~~~~~~~~~k~~l   73 (383)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI   73 (383)
T ss_dssp             CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT---------SCEEESHHHHTTSTTCGGGEEECGGGTT
T ss_pred             cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC---------CCEEECHHHHHhhhhCccceeehhHHhh
Confidence            4799999999999998865544432        5676655332         2234565543210      000000   


Q ss_pred             ---------------ceec-------------CCccCC-HHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH
Q 017124           71 ---------------YPIE-------------HGIVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        71 ---------------~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~  118 (377)
                                     +|+.             +|.... .+....+++++..   +.++  .....+++++|..++..+|
T Consensus        74 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r  151 (383)
T 1dkg_D           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR  151 (383)
T ss_dssp             TCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHH
T ss_pred             CCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence                           1221             232222 2334455555431   2233  2335799999999999999


Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcCCc------eEEEEeCCCCceEEEEeeCC------eec-CcceEEEcccHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIYEG------YAL-PHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~~g------~~~-~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|+||+++++..      +.+|+|+|+++|+++.+..+      ... .......++||+
T Consensus       152 ~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~  230 (383)
T 1dkg_D          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (383)
T ss_dssp             HHHHHHH-HHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred             HHHHHHH-HHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence            9888875 889999999999999999988653      68999999999999988754      221 112345689999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCC-c--EEee
Q 017124          186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDG-Q--VITI  252 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~v  252 (377)
                      ++++.|.+++.++     +.++....     ..+.+|++|++++.....          .-..+..+..++| .  .+.+
T Consensus       231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~----------~i~i~~~~~~~~G~~~~~~~i  300 (383)
T 1dkg_D          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT----------DVNLPYITADATGPKHMNIKV  300 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE----------EEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce----------EEEEecccccCCCCeeEEEEE
Confidence            9999999988654     44443211     245688888887753100          0000111222333 2  2344


Q ss_pred             CCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEE
Q 017124          253 GAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVV  332 (377)
Q Consensus       253 ~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~  332 (377)
                      +.+.+.   .+|+|.+     ..+.+.|.++|.++..  ....+++|+|+||+|++|++.++|++++..        ++.
T Consensus       301 t~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~  362 (383)
T 1dkg_D          301 TRAKLE---SLVEDLV-----NRSIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPR  362 (383)
T ss_dssp             EHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCB
T ss_pred             eHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhCC--------CCC
Confidence            433332   3344311     1267777788877652  344568999999999999999999999842        244


Q ss_pred             CCCCCccccchhhhhhhcc
Q 017124          333 APPERKYSVWIGGSILASL  351 (377)
Q Consensus       333 ~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+.+|..++|.||+++|++
T Consensus       363 ~~~~p~~ava~Gaa~~a~~  381 (383)
T 1dkg_D          363 KDVNPDEAVAIGAAVQGGV  381 (383)
T ss_dssp             CSSCTTTHHHHHHHHHTTT
T ss_pred             CCcChHHHHHHHHHHHHHh
Confidence            5678999999999999875

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.88  E-value=2.5e-23  Score=199.50  Aligned_cols=218  Identities=18%  Similarity=0.210  Sum_probs=144.1

Q ss_pred             CCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc---------eEEEEeCCCCceEEEEee--CC
Q 017124          102 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT---------TGIVLDSGDGVSHTVPIY--EG  170 (377)
Q Consensus       102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------~~lVVDiG~~~t~v~~v~--~g  170 (377)
                      ...+++++|..++..+|+.+.+. ++.+|++.+.++++|.||+++++..         +.+|+|+|+++|+++.+.  ++
T Consensus       158 ~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~  236 (404)
T 3i33_A          158 VHSAVITVPAYFNDSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG  236 (404)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCC
Confidence            35799999999999999988777 4889999999999999999988643         459999999999999874  43


Q ss_pred             ee-cCcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017124          171 YA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVE  239 (377)
Q Consensus       171 ~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~  239 (377)
                      .. +.......++||.++++.+.+++.++     +..+....     -.+.+|+.|+.++..                ..
T Consensus       237 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~  300 (404)
T 3i33_A          237 IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS----------------TQ  300 (404)
T ss_dssp             EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTS----------------SE
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcC----------------cc
Confidence            32 22233457899999999999888432     22222111     023455555554321                11


Q ss_pred             eeEEc---CCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017124          240 KSYEL---PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS  316 (377)
Q Consensus       240 ~~~~~---~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~  316 (377)
                      ..+.+   .++..+.+.-.|... |-++.|-     ...+.+.|.+.|.+...  ....++.|+|+||+|++|++.++|+
T Consensus       301 ~~~~~~~~~~g~~~~~~i~r~~~-~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~  372 (404)
T 3i33_A          301 ASIEIDSLYEGVDFYTSITRARF-EELNADL-----FRGTLEPVEKALRDAKL--DKGQIQEIVLVGGSTRIPKIQKLLQ  372 (404)
T ss_dssp             EEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHTHHHHHHHHHHHTC--CGGGCCEEEEESGGGGCHHHHHHHH
T ss_pred             eEEEEeeccCCceeEEEEcHHHH-HHHHHHH-----HHHHHHHHHHHHHHcCC--CHhhCCEEEEECCccccHHHHHHHH
Confidence            12221   133323222222222 2233331     11255666666665432  2345688999999999999999999


Q ss_pred             HHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          317 REITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.+..       .++..+.+|..+++.||+++|.+
T Consensus       373 ~~~~~-------~~v~~~~~p~~ava~Gaa~~a~~  400 (404)
T 3i33_A          373 DFFNG-------KELNKSINPDEAVAYGAAVQAAI  400 (404)
T ss_dssp             HHTTT-------CCCBCSSCTTTHHHHHHHHHHHH
T ss_pred             HHcCC-------CCCCCCcCHHHHHHHHHHHHHHH
Confidence            87732       13455678999999999999875

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.86  E-value=2.1e-21  Score=194.45  Aligned_cols=298  Identities=17%  Similarity=0.216  Sum_probs=188.5

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCC--------CCCcceeecCCCCccccCCCccceeccccccc------cccceee---
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK---   70 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~--------~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~---   70 (377)
                      ..|.||+||+++.+++..+..|.+        .+||+++...+         ...++|.+|...      +..+.++   
T Consensus         3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~t~~~~Kr~i   73 (605)
T 2kho_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI   73 (605)
T ss_dssp             -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTT---------SCEEESHHHHTTTTTCGGGEEECGGGTT
T ss_pred             CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECC---------CcEEECHHHHHHhhhCCCCEeehhhHhh
Confidence            489999999999999886554432        25666654322         234566655331      0000111   


Q ss_pred             ---------------ceec-------------CCccCCH-HHHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHH
Q 017124           71 ---------------YPIE-------------HGIVSNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        71 ---------------~p~~-------------~g~i~d~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~  118 (377)
                                     +|+.             .|..... +....+++++.   ...++.  .-..+++++|..++..+|
T Consensus        74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~--~v~~~VitVPa~f~d~qr  151 (605)
T 2kho_A           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQR  151 (605)
T ss_dssp             TCBSSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCS--CCCEEEEEECTTCCHHHH
T ss_pred             CCCCCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCcEEEEEECCCCCHHHH
Confidence                           1222             2322222 33344444442   123432  235799999999999999


Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee------CCee-cCcceEEEcccHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY------EGYA-LPHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~------~g~~-~~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|+||+++++.      .+.+|+|+|+++++++.+.      +|.. +.......++||.
T Consensus       152 ~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~  230 (605)
T 2kho_A          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (605)
T ss_dssp             HHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred             HHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence            9888776 88999999999999999998864      3479999999999999886      3432 2222345689999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC-c
Q 017124          186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG-Q  248 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~-~  248 (377)
                      ++++.|.+++.++     +.++....     -...+|.+|+.++...                ...+.++      +| .
T Consensus       231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~  294 (605)
T 2kho_A          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ----------------QTDVNLPYITADATGPK  294 (605)
T ss_dssp             GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS----------------EEEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEecccccCCCCce
Confidence            9999999888643     44433211     1345777777665421                1122221      22 1


Q ss_pred             E--EeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCC
Q 017124          249 V--ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSS  326 (377)
Q Consensus       249 ~--i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~  326 (377)
                      .  +.++.+.|   |-++.|-+     ..+.+.|.++|....  +...-++.|+||||+|++|++.+++++.+..     
T Consensus       295 ~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~~~fg~-----  359 (605)
T 2kho_A          295 HMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK-----  359 (605)
T ss_dssp             EEEEEEEHHHH---HTTCCSTT-----GGGTSHHHHHHHTTT--CCTTTCSEEEEESGGGGSHHHHHHHHHHHSS-----
T ss_pred             EEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcC--CChhhCceEEEECCcccChHHHHHHHHhcCC-----
Confidence            1  23333322   22333311     226777888887664  2234468999999999999999999988832     


Q ss_pred             ceEEEECCCCCccccchhhhhhhcc
Q 017124          327 MKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       327 ~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                         .+....+|..+++.||+++|..
T Consensus       360 ---~~~~~~npd~aVA~GAa~~a~~  381 (605)
T 2kho_A          360 ---EPRKDVNPDEAVAIGAAVQGGV  381 (605)
T ss_dssp             ---CCBCSSCTTTHHHHHHHHHHTT
T ss_pred             ---CcCcCCCcchHHHHHHHHHHHH
Confidence               2345678899999999999974

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.85  E-value=6e-21  Score=189.38  Aligned_cols=215  Identities=17%  Similarity=0.226  Sum_probs=146.4

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--CCee-
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA-  172 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~-  172 (377)
                      ..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++.       .+.+|+|+|+++++++.+.  +|.. 
T Consensus       140 ~~~VitVPa~f~~~qr~a~~~A~-~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~  218 (554)
T 1yuw_A          140 TNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFE  218 (554)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH-HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEE
Confidence            57999999999999999888755 88999999999999999998863       4689999999999999887  6754 


Q ss_pred             cCcceEEEcccHHHHHHHHHHHHHH-----cCCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeE
Q 017124          173 LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY  242 (377)
Q Consensus       173 ~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~  242 (377)
                      +.......++||+++++.|.+++.+     .+.++....     -...+|++|+.++...                ...+
T Consensus       219 v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~----------------~~~i  282 (554)
T 1yuw_A          219 VKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST----------------QASI  282 (554)
T ss_dssp             EEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------------EEEE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------------eEEE
Confidence            2334445689999999999988853     233332211     1245667776655321                1222


Q ss_pred             EcC---CCcEE--eeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017124          243 ELP---DGQVI--TIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSR  317 (377)
Q Consensus       243 ~~~---~~~~i--~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~  317 (377)
                      .++   +|...  .+..+.|   |.++.|-+     ..+.+.|.+++....  +.+..++.|+|+||+|++|++.++|++
T Consensus       283 ~i~~~~~g~~~~~~ltr~~~---e~l~~~~~-----~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~~  352 (554)
T 1yuw_A          283 EIDSLYEGIDFYTSITRARF---EELNADLF-----RGTLDPVEKALRDAK--LDKSQIHDIVLVGGSTRIPKIQKLLQD  352 (554)
T ss_dssp             EETTCSSSCCEEEEEEHHHH---HHHTHHHH-----HHTTHHHHHHHHHTT--CCGGGCCEEEEESGGGGCHHHHHHHHH
T ss_pred             EEeeccCCceEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcC--CChhhCcEEEEECCcccChHHHHHHHH
Confidence            222   23222  2222222   12222200     114556666666542  223456899999999999999999988


Q ss_pred             HHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .+...       ++..+.+|..+++.||+++|..
T Consensus       353 ~f~~~-------~v~~~~np~~aVA~Gaa~~a~~  379 (554)
T 1yuw_A          353 FFNGK-------ELNKSINPDEAVAYGAAVQAAI  379 (554)
T ss_dssp             HTTTC-------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred             HcCCC-------ccccCCCchhHHHHHHHHHHHH
Confidence            77421       3345678899999999999863

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.84  E-value=6.3e-21  Score=192.58  Aligned_cols=213  Identities=10%  Similarity=0.176  Sum_probs=146.4

Q ss_pred             CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------------ceEEEEeCCCCceEEEEee--
Q 017124          103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY--  168 (377)
Q Consensus       103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v~--  168 (377)
                      ..+++++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|.            .+.+|+|+|+++++|+.+.  
T Consensus       139 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~  217 (675)
T 3d2f_A          139 TDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK  217 (675)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence            57999999999999999888866 88999999999999999987642            4689999999999999886  


Q ss_pred             CCee-cCcceEEEcccHHHHHHHHHHHHHH-----cCCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCC
Q 017124          169 EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSA  237 (377)
Q Consensus       169 ~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~  237 (377)
                      +|.. +.......++||.++++.|.+++.+     .+.++....     -...+|.+|+.++...               
T Consensus       218 ~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~---------------  282 (675)
T 3d2f_A          218 KGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT---------------  282 (675)
T ss_dssp             TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS---------------
T ss_pred             CCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC---------------
Confidence            6654 3333345689999999999998853     233332111     1345666776654210               


Q ss_pred             cceeEEcC---CCc--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcCh
Q 017124          238 VEKSYELP---DGQ--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI  311 (377)
Q Consensus       238 ~~~~~~~~---~~~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl  311 (377)
                       ...+.++   ++.  .+.++.+.|. ..+.++..         +.+.|.++|.....  ...-++.|+|+||+|++|++
T Consensus       283 -~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~---------i~~~i~~~L~~a~l--~~~~I~~VvLvGGssriP~v  350 (675)
T 3d2f_A          283 -NAPFSVESVMNDVDVSSQLSREELEELVKPLLER---------VTEPVTKALAQAKL--SAEEVDFVEIIGGTTRIPTL  350 (675)
T ss_dssp             -EEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTT---------TTHHHHHHHHHHTC--CGGGCCEEEEESGGGGSHHH
T ss_pred             -ceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHhCC--ChhhCcEEEEECCCccChHH
Confidence             1122222   122  2233332222 12223332         66677777765421  12346799999999999999


Q ss_pred             HHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          312 ADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       312 ~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      .++|++.+..        .+....+|..+++.||+++|..
T Consensus       351 ~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~~  382 (675)
T 3d2f_A          351 KQSISEAFGK--------PLSTTLNQDEAIAKGAAFICAI  382 (675)
T ss_dssp             HHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC--------CccccCCcchHHHHHHHHHHHH
Confidence            9999988832        3456678999999999999863

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.82  E-value=3.7e-21  Score=184.57  Aligned_cols=237  Identities=14%  Similarity=0.152  Sum_probs=149.2

Q ss_pred             HHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc--------e
Q 017124           83 DMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------T  151 (377)
Q Consensus        83 ~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--------~  151 (377)
                      ....+++++..   ..++  .....+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++..        +
T Consensus       130 v~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~  206 (409)
T 4gni_A          130 IATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDKI  206 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCEE
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCCE
Confidence            34455555431   3333  23467999999999999999888776 889999999999999999998754        5


Q ss_pred             EEEEeCCCCceEEEEe--eCCee-cCcceEEEcccHHHHHHHHHHHHHHc-----C--CCCcchh-----HHHHHHHHHH
Q 017124          152 GIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDALMKILTER-----G--YSFTTTA-----EREIVRDMKE  216 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v--~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~--~~~~~~~-----~~~~~~~ik~  216 (377)
                      .+|+|+|+++|+++.+  .+|.. +.......++||.++++.|.+++.++     +  .+.....     -...+|.+|+
T Consensus       207 vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~  286 (409)
T 4gni_A          207 IVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKR  286 (409)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHH
Confidence            8999999999999885  33321 12222347999999999999888643     1  1111100     0124555555


Q ss_pred             hcceeecCHHHHHHHhccCCCcceeEEc---CCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHH
Q 017124          217 KLAYVALDYEQELEAAKSSSAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRK  293 (377)
Q Consensus       217 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~  293 (377)
                      .++..                ....+.+   .++....+.-.|... |-+++|-     ...+.+.|.+.|.+..  ...
T Consensus       287 ~ls~~----------------~~~~i~i~~~~~~~~~~~~itr~~~-~~~~~~~-----~~~i~~~i~~~l~~~~--~~~  342 (409)
T 4gni_A          287 ALSRS----------------TNASFSVESLIDGLDFASTINRLRY-ETIARTV-----FEGFNRLVESAVKKAG--LDP  342 (409)
T ss_dssp             HHHHS----------------SEEEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHHHHHHHHHHHHTT--CCG
T ss_pred             hCCCC----------------CceEEEeecccCCcceEEEeeHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CCH
Confidence            44311                0111221   123222222222222 2233331     0115555566665442  223


Q ss_pred             HhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEE------ECCCCCccccchhhhhhhccc
Q 017124          294 DLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKV------VAPPERKYSVWIGGSILASLS  352 (377)
Q Consensus       294 ~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v------~~~~~~~~~~w~Gasi~a~l~  352 (377)
                      ..++.|+||||+|++|++.++|++.+..      .+++      ....+|+.++..||+++|...
T Consensus       343 ~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~  401 (409)
T 4gni_A          343 LDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLI  401 (409)
T ss_dssp             GGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence            4568899999999999999999877732      2345      344688999999999998763

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.78  E-value=2.1e-19  Score=180.00  Aligned_cols=300  Identities=18%  Similarity=0.193  Sum_probs=179.3

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceeecee
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPI   73 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~   73 (377)
                      .+|.||+||+++.+++..+..|.        ..+||+++...+         ...++|.+|...      ...+.+++.+
T Consensus         3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krll   73 (605)
T 4b9q_A            3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GCTLVGQPAKRQAVTNPQNTLFAIKRLI   73 (605)
T ss_dssp             CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTT---------SCEEESHHHHHTTTTCGGGEECCGGGTT
T ss_pred             cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCC---------CcEEecHHHHHHHHhCCCcEehhhHHhh
Confidence            57999999999999987554443        344666654322         234566655432      0011111111


Q ss_pred             c-------------------------------CCccCC-HHHHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHH
Q 017124           74 E-------------------------------HGIVSN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR  118 (377)
Q Consensus        74 ~-------------------------------~g~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~  118 (377)
                      .                               .|.... .+....+++++.   ...|+.  .-..+++++|..++..+|
T Consensus        74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr  151 (605)
T 4b9q_A           74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQR  151 (605)
T ss_dssp             TCBTTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHH
T ss_pred             CCCCCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence            1                               111122 233444444443   234443  235799999999999999


Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEeeCCe----e---cCcceEEEcccHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEGY----A---LPHAILRLDLAGR  185 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~----~---~~~~~~~~~~GG~  185 (377)
                      +.+.+.+ +.+|++.+.++++|.||++++|.      .+.+|+|+|+++++++.+.-+.    .   +........+||.
T Consensus       152 ~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~  230 (605)
T 4b9q_A          152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE  230 (605)
T ss_dssp             HHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred             HHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence            8877776 88999999999999999998863      4679999999999999886433    1   1222234588999


Q ss_pred             HHHHHHHHHHHHc-----CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC----C--C-c
Q 017124          186 DLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP----D--G-Q  248 (377)
Q Consensus       186 ~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~--~-~  248 (377)
                      ++++.|.+++.++     +.++.....     ...+|..|..++..                ....+.++    +  + .
T Consensus       231 d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~----------------~~~~i~~~~~~~~~~g~~  294 (605)
T 4b9q_A          231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA----------------QQTDVNLPYITADATGPK  294 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTC----------------SEEEEEEEEEEECSSSEE
T ss_pred             HHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcC----------------CCeEEEEeeeccCCCCCe
Confidence            9999999888642     333221111     33455666555422                11111111    1  1 1


Q ss_pred             EEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCce
Q 017124          249 VITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMK  328 (377)
Q Consensus       249 ~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~  328 (377)
                      .+.+.-.|..+ |-++.|-     ...+.+.|.+++....  ....-++.|+||||+|++|++.+++++.+..       
T Consensus       295 ~~~~~itr~~~-e~l~~~~-----~~~i~~~v~~~L~~a~--~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~-------  359 (605)
T 4b9q_A          295 HMNIKVTRAKL-ESLVEDL-----VNRSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK-------  359 (605)
T ss_dssp             EEEEEEEHHHH-HHHHHHH-----HHHTTHHHHHHHHHTT--CCGGGCSEEEEESGGGGSHHHHHHHHHHHTS-------
T ss_pred             eEEEEEeHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CCHHHCcEEEEeCCccCchHHHHHHHHHhcc-------
Confidence            12222122211 1122220     0114445555555432  1223457899999999999999999988832       


Q ss_pred             EEEECCCCCccccchhhhhhhcc
Q 017124          329 IKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       329 v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                       .+....+|+.++..||+++|..
T Consensus       360 -~~~~~~nPdeaVA~GAai~a~~  381 (605)
T 4b9q_A          360 -EPRKDVNPDEAVAIGAAVQGGV  381 (605)
T ss_dssp             -CCCSSSCTTTHHHHHHHHHHHH
T ss_pred             -CcCCCcChhHHHHHhHHHHHHH
Confidence             2344568899999999999864

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=99.76  E-value=1.3e-18  Score=162.67  Aligned_cols=179  Identities=15%  Similarity=0.128  Sum_probs=128.1

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcccc--------C------CCccceeccccccccccceeecee
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG--------M------GQKDAYVGDEAQSKRGILTLKYPI   73 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~--------~------~~~~~~vg~~~~~~~~~~~~~~p~   73 (377)
                      -.+.||+|+.++|+-. ++ .-.+.+||.++.........+        .      ....+.||++|.         +|+
T Consensus        22 ~~igiDlG~~~tkv~~-~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~---------~~l   90 (346)
T 2fsj_A           22 VVVGLDVGYGDTKVIG-VD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR---------VPQ   90 (346)
T ss_dssp             EEEEEEECSSEEEEEC-GG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB---------CCS
T ss_pred             EEEEEecCCcceeEEe-cC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee---------ccc
Confidence            3689999999999864 33 234568888876544221000        0      134567887654         899


Q ss_pred             cCCccCCHHHHHHHHHHhhcccc-cCCCCCCcEE--EEeCCCCChHHHHHHhhhhccc-------------cCCCeEEee
Q 017124           74 EHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVL--LTEAPLNPKANREKMTQIMFET-------------FNVPAMYVA  137 (377)
Q Consensus        74 ~~g~i~d~~~~~~~~~~~~~~~L-~~~~~~~~vv--l~~p~~~~~~~~~~l~~~lfe~-------------~~~~~v~~~  137 (377)
                      +++.+.+ +..+.++.+.+.+.. ........++  ++.|......+|+.+.+.+...             +++..+.++
T Consensus        91 ~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li  169 (346)
T 2fsj_A           91 GDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR  169 (346)
T ss_dssp             STTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEE
T ss_pred             CCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEE
Confidence            9999998 777777777764432 1112345689  9999988888888888776432             135679999


Q ss_pred             ehhhhhhhhc--C-----C-ceEEEEeCCCCceEEEEee--CCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017124          138 IQAVLSLYAS--G-----R-TTGIVLDSGDGVSHTVPIY--EGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       138 ~~~~~a~~~~--g-----~-~~~lVVDiG~~~t~v~~v~--~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      ++|++|++++  +     . .+.+|||+|+++|+++.+.  +|.++.......++||+++++.+.+.++++
T Consensus       170 ~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~  240 (346)
T 2fsj_A          170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE  240 (346)
T ss_dssp             ETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence            9999999974  2     1 4559999999999999998  787666556788999999999998877543

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=99.75  E-value=6e-18  Score=160.47  Aligned_cols=171  Identities=16%  Similarity=0.235  Sum_probs=109.0

Q ss_pred             HHHhhhhccccCCCeEEeeehhhhhhhhcC-------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      +.+.+.+ +.+|++...+..+|+|++.+++       ..+.+|||+|+++|+++.+.+|.++  .....++||.++++.+
T Consensus       154 ~~~~~~~-~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~--~~~~~~~GG~~i~~~i  230 (377)
T 2ych_A          154 AGVLEAL-RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL--AVRVLTLSGKDFTEAI  230 (377)
T ss_dssp             HHHHHHH-HHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHHH
T ss_pred             HHHHHHH-HHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE--EEEeeechHHHHHHHH
Confidence            4444444 8899999999999999998864       2456999999999999999999987  5677899999999999


Q ss_pred             HHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCC
Q 017124          192 MKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGM  271 (377)
Q Consensus       192 ~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~  271 (377)
                      .+.+   +.      +.+.+|++|+++++......++.          ..+.+++ ..+.++.+.+  .+++ .|     
T Consensus       231 ~~~~---~~------~~~~aE~~K~~~~~~~~~~~~~~----------~~i~~~~-~~~~i~~~~~--~~~i-~~-----  282 (377)
T 2ych_A          231 ARSF---NL------DLLAAEEVKRTYGMATLPTEDEE----------LLLDFDA-ERERYSPGRI--YDAI-RP-----  282 (377)
T ss_dssp             HHHT---TC------CHHHHHHHHHHTC------------------------------------CH--HHHH-HH-----
T ss_pred             HHHh---CC------CHHHHHHHHhhcccccccccccc----------ccccccc-ccccCCHHHH--HHHH-HH-----
Confidence            8743   22      24679999999887643211110          0111211 1122221111  1111 11     


Q ss_pred             CCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017124          272 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT  320 (377)
Q Consensus       272 ~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~  320 (377)
                      ....+.+.|.+++..++...+....++|+||||+|++||+.+++++.+.
T Consensus       283 ~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~  331 (377)
T 2ych_A          283 VLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG  331 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence            0112555666666655445556678899999999999999999999994

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=99.69  E-value=2.7e-16  Score=150.36  Aligned_cols=199  Identities=12%  Similarity=0.149  Sum_probs=131.4

Q ss_pred             HHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 017124          116 ANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       116 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      ...+.+.+++ +..|+....++.+|+||++++..     .+.+|||+|+++|+++.+.+|.++  .....++||+++++.
T Consensus       168 ~~v~n~~~~~-~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~--~~~~i~~GG~~it~d  244 (419)
T 4a2a_A          168 KVYEMFYNFL-QDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIKD  244 (419)
T ss_dssp             HHHHHHHHHH-HTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEE--EEEEESCCHHHHHHH
T ss_pred             HHHHHHHHHH-HHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEE--EEEecccHHHHHHHH
Confidence            3445566555 88999999999999999998764     368999999999999999999988  567889999999999


Q ss_pred             HHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC--CC-cEEeeCCccc-cccccCCCC
Q 017124          191 LMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP--DG-QVITIGAERF-RCPEVLFQP  266 (377)
Q Consensus       191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~v~~~~~-~~~e~lf~p  266 (377)
                      +...+.         ...+.+|.+|.+++......           .....+.++  ++ ....++...+ ...+..++ 
T Consensus       245 Ia~~l~---------~~~~~AE~iK~~~g~a~~~~-----------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~ve-  303 (419)
T 4a2a_A          245 VSAVLD---------TSFEESERLIITHGNAVYND-----------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR-  303 (419)
T ss_dssp             HHHHHT---------CCHHHHHHHHHHHCCSCCTT-----------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHHH-
T ss_pred             HHHHHC---------CCHHHHHHHHHHhccCcccC-----------CCCceEEEeecCCccceEEcHHHHHHHHHHHHH-
Confidence            998762         23567999999887653211           011122222  11 1122211111 11111211 


Q ss_pred             ccCCCCCCChHHHHHHHHhcCCh---h-HHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEEC-----C---
Q 017124          267 SLIGMEAAGIHETTYNSIMKCDV---D-IRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVA-----P---  334 (377)
Q Consensus       267 ~~~~~~~~~l~~~I~~~i~~~~~---~-~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~-----~---  334 (377)
                              .+.+.|.+.|.....   + ......+.|+||||+|++||+.+.+++.+..      ++++..     |   
T Consensus       304 --------ei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~------~vri~~~~~~~p~~~  369 (419)
T 4a2a_A          304 --------EIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS------PVRTGCYANSDRPSI  369 (419)
T ss_dssp             --------HHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS------CEEECCGGGSSSCCC
T ss_pred             --------HHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC------CeEEEecCCCCchhc
Confidence                    155566666665432   1 1456778999999999999999999999842      456655     3   


Q ss_pred             -------CCCccccchhhhhhhccc
Q 017124          335 -------PERKYSVWIGGSILASLS  352 (377)
Q Consensus       335 -------~~~~~~~w~Gasi~a~l~  352 (377)
                             .+|.|+.-+|-.+++...
T Consensus       370 ~~~~~~~~~P~~~t~~Gl~~~~~~~  394 (419)
T 4a2a_A          370 INADEVANDPSFAAAFGNVFAVSEN  394 (419)
T ss_dssp             BTCHHHHTCGGGHHHHHTTCC----
T ss_pred             cCcccccCCchHHHHHHHHHHHhhc
Confidence                   367888889988877553

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=99.56  E-value=8.6e-15  Score=135.53  Aligned_cols=288  Identities=11%  Similarity=0.105  Sum_probs=152.8

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcccc--------CCCccceeccccccccccceeeceecCCccCC
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG--------MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN   80 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~--------~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d   80 (377)
                      .+.||+|++++|+.+..++.....+|+............+        .++..+.+|..+..      .......+.-..
T Consensus         2 ~igiD~G~sntK~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~g~~y~vg~~a~~------~~~t~~~~~~~~   75 (320)
T 2zgy_A            2 LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD------AVVTTNIAWQYS   75 (320)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBS------CCCSCCSGGGGS
T ss_pred             eEEEecCCccceEEEecCCCEEEEEecCceeecccccccCCCceeEEEECCEEEEEcccccc------cccCcCCCccch
Confidence            5899999999999885444333344332211110100001        12233455544321      111122222222


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCcEEEEeCCC-CCh-----------HHHHHHhhhh----ccccCCCeEEeeehhhhhh
Q 017124           81 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL-NPK-----------ANREKMTQIM----FETFNVPAMYVAIQAVLSL  144 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~-~~~-----------~~~~~l~~~l----fe~~~~~~v~~~~~~~~a~  144 (377)
                      ...+-.+. +.+. ..+....+..+++..|.. +..           ..++.+.+.+    .+.+++..+.++++|++|+
T Consensus        76 ~~~l~~i~-~aL~-~~~~~~~~~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~  153 (320)
T 2zgy_A           76 DVNVVAVH-HALL-TSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAG  153 (320)
T ss_dssp             HHHHHHHH-HHHH-HHSCCSCEEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHH
T ss_pred             HHHHHHHH-HHHH-HcCCCCceEEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHH
Confidence            33333333 2321 223333334588888855 211           1122223322    3566778999999999999


Q ss_pred             hhcC-----CceEEEEeCCCCceEEEEeeCCee-cCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHH-HHh
Q 017124          145 YASG-----RTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDM-KEK  217 (377)
Q Consensus       145 ~~~g-----~~~~lVVDiG~~~t~v~~v~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~  217 (377)
                      ++++     ..+.+|||||+++|+++.+.+|.+ +.......++||.++++.+.+.+.+++..+    ..+.++++ |.+
T Consensus       154 ~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~~~i----~~~~ae~~lk~~  229 (320)
T 2zgy_A          154 YEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG----SSYLADDIIIHR  229 (320)
T ss_dssp             HHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG----GHHHHHHHHHTT
T ss_pred             HhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHh
Confidence            8763     357899999999999999999876 433456779999999999999886543222    33456766 544


Q ss_pred             cceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc
Q 017124          218 LAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG  297 (377)
Q Consensus       218 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~  297 (377)
                      ....   +..  ..  .        ..|.        ......+. +.+     ....+.+.|.+.+.+.      .-++
T Consensus       230 ~~~~---~~~--~~--i--------~~~~--------~~~~~~~~-i~~-----~~~~~~~~i~~~i~~~------~~~~  274 (320)
T 2zgy_A          230 KDNN---YLK--QR--I--------NDEN--------KISIVTEA-MNE-----ALRKLEQRVLNTLNEF------SGYT  274 (320)
T ss_dssp             TCHH---HHH--HH--S--------SSSC--------THHHHHHH-HHH-----HHHHHHHHHHHHHTTC------CCCC
T ss_pred             hhhh---ccc--ce--e--------cCch--------hhHHHHHH-HHH-----HHHHHHHHHHHHHHhh------cCCC
Confidence            2100   000  00  0        0000        00000000 000     0001333444444432      1246


Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .|+||||+|.+  +.+.+    ++.++.. .-++..+++|+++..+|+.++++
T Consensus       275 ~vvl~GGga~l--l~~~l----~~~~~~~-~~~~~~~~~P~~a~A~G~~~~~~  320 (320)
T 2zgy_A          275 HVMVIGGGAEL--ICDAV----KKHTQIR-DERFFKTNNSQYDLVNGMYLIGN  320 (320)
T ss_dssp             EEEEESTTHHH--HHHHH----HHTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred             eEEEECChHHH--HHHHH----HHHhCCC-CCceeeCCCcHHHHHHHHHHhcC
Confidence            89999999987  44444    4444321 00245677899999999998863

>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}

Probab=99.50  E-value=8.2e-15  Score=135.92  Aligned_cols=285  Identities=14%  Similarity=0.122  Sum_probs=162.7

Q ss_pred             CCCCCCEEEeCCCCceEEeee--C---CCCCCCCCCcceeecCCCC-------ccccCCCccceeccccccccccceeec
Q 017124            4 AEDIQPLVCDNGTGMVKAGFA--G---DDAPRAVFPSIVGRPRHTG-------VMVGMGQKDAYVGDEAQSKRGILTLKY   71 (377)
Q Consensus         4 ~~~~~~vviD~Gs~~~k~G~~--~---~~~P~~~~p~~~~~~~~~~-------~~~~~~~~~~~vg~~~~~~~~~~~~~~   71 (377)
                      +++.-.|.||+|-+++|+...  +   ++.-+..+||.++...+..       .....++..++||+.+...        
T Consensus         4 ~~~~~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~--------   75 (329)
T 4apw_A            4 ITNEYVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVED--------   75 (329)
T ss_dssp             -CCEEEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSC--------
T ss_pred             ccCceEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccc--------
Confidence            345557899999999998653  2   1123457888877543321       1223456678888865321        


Q ss_pred             eecCCccCCHHHHHHHHHHhhcccccCC-CCCCcEEEEeCCCCCh--HHHHHHhhhhcc-------------ccCCCeEE
Q 017124           72 PIEHGIVSNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPK--ANREKMTQIMFE-------------TFNVPAMY  135 (377)
Q Consensus        72 p~~~g~i~d~~~~~~~~~~~~~~~L~~~-~~~~~vvl~~p~~~~~--~~~~~l~~~lfe-------------~~~~~~v~  135 (377)
                      -.....-  -+....++..++-+.+... ..+..+++..|...-.  .+++.+.+.+-.             .+.+..+.
T Consensus        76 ~~~~~k~--~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~  153 (329)
T 4apw_A           76 SSETSKT--NLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDIT  153 (329)
T ss_dssp             SGGGCCC--TTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEE
T ss_pred             cccCCcC--chhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEE
Confidence            1122221  1234444445543444332 1234567777755332  234444444431             12246799


Q ss_pred             eeehhhhhhhhcC----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHH-c-CCCCcchhHHH
Q 017124          136 VAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-R-GYSFTTTAERE  209 (377)
Q Consensus       136 ~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-~-~~~~~~~~~~~  209 (377)
                      +.+++++|.+...    ..+.+|||||+++|+++.+.+|.++.......++||.++++.+.+.+.+ + +..+.    ..
T Consensus       154 v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i~----~~  229 (329)
T 4apw_A          154 IKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTDLNNGNLIT----NE  229 (329)
T ss_dssp             EEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSSCSSCSCTT----SB
T ss_pred             EEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHhhccCCCCC----HH
Confidence            9999999998762    3578999999999999999999998766678899999999999987754 2 22221    12


Q ss_pred             HHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhc--C
Q 017124          210 IVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMK--C  287 (377)
Q Consensus       210 ~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~--~  287 (377)
                      .++++|.. +.+..                      .+....+.  .....+.+          ..+.+.|.+.+.+  +
T Consensus       230 ~~e~i~~~-g~~~~----------------------g~~~~~~~--~~~i~~~~----------~e~~~~I~~~i~~~~~  274 (329)
T 4apw_A          230 QAESALNN-GYMKK----------------------GGEIDTES--STVIKKVK----------EKFLKDAIKLIEKRGF  274 (329)
T ss_dssp             TTTTCSSS-CSSCE----------------------ECTTCCST--THHHHHHH----------HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhc-CCccc----------------------CCcchhHH--HHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence            23444332 11100                      00000000  00000000          0123333444432  3


Q ss_pred             ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          288 DVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       288 ~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      |.+    +.+.|+||||+|.+  +.+.+++++    +.    ++...++|.++...|+..++..
T Consensus       275 ~~~----~~~~IvltGGGA~l--~~~~l~~~~----~~----~v~v~~~P~~a~a~G~~~~~~~  324 (329)
T 4apw_A          275 KLD----QLDSLIFIGGTTQK--LKEQISKTY----PN----NSIITNNSQWTTCEGLYKVAVA  324 (329)
T ss_dssp             CTT----SCSEEEEESTTHHH--HHHHHHHHS----TT----CEECCSSGGGHHHHHHHHHHHH
T ss_pred             CHH----HccEEEEECChHHH--HHHHHHHHc----CC----CCEecCCChhhHHHHHHHHHhh
Confidence            333    45889999999998  445555543    32    2445678999999999887654

>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}

Probab=99.45  E-value=9.6e-14  Score=129.85  Aligned_cols=185  Identities=14%  Similarity=0.162  Sum_probs=119.1

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc---------------cccCCCcc-ceeccccccccccceeec
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------------MVGMGQKD-AYVGDEAQSKRGILTLKY   71 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~---------------~~~~~~~~-~~vg~~~~~~~~~~~~~~   71 (377)
                      -.|.||+|-.++|+ ..++  -.+.+||.++...+...               .+..+... ++||+.|......  ..+
T Consensus         5 ~iigiD~G~~~~K~-~~~~--~~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~--~~~   79 (355)
T 3js6_A            5 YVMALDFGNGFVKG-KIND--EKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNT--GKD   79 (355)
T ss_dssp             EEEEEEECSSEEEE-EETT--EEEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSC--CEE
T ss_pred             EEEEEEcCCCcEEE-ecCC--eEEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcc--ccc
Confidence            47999999999996 4444  24678888875432211               11123455 8899877442111  122


Q ss_pred             ee-cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH-HHHhhhhccc-----------cCCCeEE
Q 017124           72 PI-EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR-EKMTQIMFET-----------FNVPAMY  135 (377)
Q Consensus        72 p~-~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~-~~l~~~lfe~-----------~~~~~v~  135 (377)
                      .+ ...+..+-+ ...++...+.   +.+..+..+..+++..|......++ +.+.+.+-..           +.+..|.
T Consensus        80 ~~~~~~k~~~~~-~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~  158 (355)
T 3js6_A           80 TASTNDRYDIKS-FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVK  158 (355)
T ss_dssp             CCCSTTGGGSHH-HHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEE
T ss_pred             ccccCCcccCHH-HHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEE
Confidence            22 334444432 2223323321   1121111234588888887665555 4666666432           2236899


Q ss_pred             eeehhhhhhhhcC-----------CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017124          136 VAIQAVLSLYASG-----------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       136 ~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      ++++|.+|+++++           ..+.+|||||+++|+++.+.+|.++...+...++||..+++.+.+.+.++
T Consensus       159 v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~  232 (355)
T 3js6_A          159 IVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK  232 (355)
T ss_dssp             EEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred             EEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence            9999999999874           45679999999999999999999987777789999999999999998654

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=98.98  E-value=1.2e-09  Score=104.06  Aligned_cols=199  Identities=12%  Similarity=0.101  Sum_probs=115.9

Q ss_pred             HHHHhhhhccccCC--CeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 017124          118 REKMTQIMFETFNV--PAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       118 ~~~l~~~lfe~~~~--~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      .+.+.+++-..+++  ..-.  .+|+||.+++-.     ...++||+|+++|+++.+.+|..+  +...+++||+++|..
T Consensus       370 m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv--~a~~ip~gG~~VT~D  445 (610)
T 2d0o_A          370 MAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDI--IATHLAGAGDMVTMI  445 (610)
T ss_dssp             HHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCE--EEEEEECSHHHHHHH
T ss_pred             HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHH
Confidence            34455555333355  2222  788888887643     367999999999999999999988  677789999999999


Q ss_pred             HHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEee--CCc-cccccc-cCCCC
Q 017124          191 LMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQP  266 (377)
Q Consensus       191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~~-~~~~~e-~lf~p  266 (377)
                      +..-|.   .     .+.+.+|+||. ++.+....             ..... .+...+++  .+. ...++. .+..|
T Consensus       446 IA~~Lg---t-----~d~~~AErIK~-YG~A~ve~-------------lf~~~-dede~Iev~~~~lgp~~~~Rv~~~~~  502 (610)
T 2d0o_A          446 IARELG---L-----EDRYLAEEIKK-YPLAKVES-------------LFHLR-HEDGSVQFFSTPLPPAVFARVCVVKA  502 (610)
T ss_dssp             HHHHHT---C-----CCHHHHHHHHH-SCEEEECS-------------SSEEE-ETTSCEEECSSCCCGGGTTCEEEECS
T ss_pred             HHHHhC---C-----CCHHHHHHhcc-cCceeecc-------------ccccc-CCCCeEEEecCCCCcceeeeeecccc
Confidence            998882   1     13678999999 88765331             00000 01112222  100 000001 00000


Q ss_pred             cc-CCCCCCC--hHH--HHHHHHhcC---ChhHHH----------HhhcCceeccCCcCCcChHHHHHHHHHhcCCCCce
Q 017124          267 SL-IGMEAAG--IHE--TTYNSIMKC---DVDIRK----------DLYGNIVLSGGSTMFPGIADRMSREITALAPSSMK  328 (377)
Q Consensus       267 ~~-~~~~~~~--l~~--~I~~~i~~~---~~~~~~----------~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~  328 (377)
                      +. ... .+.  +.+  ++.+.+.+.   ...+|.          ..+..||||||+|+++|+.+-.++.|.++     .
T Consensus       503 ~~L~~I-~pR~~vEElelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y-----~  576 (610)
T 2d0o_A          503 DELVPL-PGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY-----R  576 (610)
T ss_dssp             SCEEEC-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS-----S
T ss_pred             cceeee-CCCcchHHHHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----C
Confidence            11 111 112  333  222331110   000111          11256999999999999999999888652     4


Q ss_pred             EEEECC-----CCCccccchhhhhhh
Q 017124          329 IKVVAP-----PERKYSVWIGGSILA  349 (377)
Q Consensus       329 v~v~~~-----~~~~~~~w~Gasi~a  349 (377)
                      |++-.+     ..|.|++..|-.+|.
T Consensus       577 VRiGrP~~~gv~gP~fAtAvGLlly~  602 (610)
T 2d0o_A          577 LVAGRGNIRGSEGPRNAVATGLILSW  602 (610)
T ss_dssp             CEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred             eEEecCCccccCCCcHHHHHHHHHHH
Confidence            566554     367888888865553

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=98.96  E-value=6.1e-10  Score=106.30  Aligned_cols=180  Identities=12%  Similarity=0.122  Sum_probs=107.3

Q ss_pred             ehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHH
Q 017124          138 IQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR  212 (377)
Q Consensus       138 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~  212 (377)
                      .+|+||.+++-.     ...++||+|+++|+++.+.+|..+  +...+++||+++|..+..-|.   .     .+.+.+|
T Consensus       392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv--~a~~ip~gG~~VT~DIA~~Lg---~-----~d~~~AE  461 (607)
T 1nbw_A          392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQI--TAVHLAGAGNMVSLLIKTELG---L-----EDLSLAE  461 (607)
T ss_dssp             CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCE--EEEEEECCHHHHHHHHHHHHT---C-----SCHHHHH
T ss_pred             ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC---C-----CCHHHHH
Confidence            678888877643     367999999999999999999888  677789999999999998882   1     1368899


Q ss_pred             HHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEee--CCc-cccccc-cCCCCc-cCCCCCCC--hHH--HHHHH
Q 017124          213 DMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQPS-LIGMEAAG--IHE--TTYNS  283 (377)
Q Consensus       213 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~~-~~~~~e-~lf~p~-~~~~~~~~--l~~--~I~~~  283 (377)
                      +||. ++.+....             ..+.. .+...+++  .+. ...++. .+..|+ +... .+.  +.+  ++.+.
T Consensus       462 rIK~-YG~A~~e~-------------lf~~~-dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEElelVR~~  525 (607)
T 1nbw_A          462 AIKK-YPLAKVES-------------LFSIR-HENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNASPLEKIRLVRRQ  525 (607)
T ss_dssp             HHHH-SCEEEECS-------------SSEEE-ETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHHHHHHHHH
T ss_pred             Hhcc-cCceeecc-------------ccccc-CCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHHHHHHHHH
Confidence            9999 88765331             00000 01111222  000 000000 000000 0011 111  333  22333


Q ss_pred             ----------HhcCChhH---HHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC-----CCCccccchhh
Q 017124          284 ----------IMKCDVDI---RKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP-----PERKYSVWIGG  345 (377)
Q Consensus       284 ----------i~~~~~~~---~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Ga  345 (377)
                                +.......   .-..+..||||||+|+++|+.+-.++.|.++     .|++-.+     ..|.|++..|-
T Consensus       526 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGL  600 (607)
T 1nbw_A          526 AKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGL  600 (607)
T ss_dssp             HHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHH
T ss_pred             HhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHH
Confidence                      22111000   0012256999999999999999999999762     3455444     36788888886


Q ss_pred             hhh
Q 017124          346 SIL  348 (377)
Q Consensus       346 si~  348 (377)
                      .+|
T Consensus       601 lly  603 (607)
T 1nbw_A          601 LLA  603 (607)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=98.64  E-value=5.5e-08  Score=87.62  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=92.9

Q ss_pred             eEEeeehhhhhhhhcC---CceEEEEeCCCCceEEEEe-eCCeecCc-ceEEEcccHHHHHHHHHHHHHHcCCCCcchhH
Q 017124          133 AMYVAIQAVLSLYASG---RTTGIVLDSGDGVSHTVPI-YEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAE  207 (377)
Q Consensus       133 ~v~~~~~~~~a~~~~g---~~~~lVVDiG~~~t~v~~v-~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~  207 (377)
                      .+..++++.|+++++.   .....|+|+|++.+.++.+ .+|..... ...+..-|+-++.+.+.+.|   +..+..   
T Consensus        73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l---~~~~~~---  146 (276)
T 4ehu_A           73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKII---EVDVSE---  146 (276)
T ss_dssp             CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHH---TCCGGG---
T ss_pred             CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHh---ccChhh---
Confidence            3567889998887764   3456889999999888776 45543311 11234566666777777666   333322   


Q ss_pred             HHHHHHHHHhcc--e-e---ecCHHH-HHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHH
Q 017124          208 REIVRDMKEKLA--Y-V---ALDYEQ-ELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETT  280 (377)
Q Consensus       208 ~~~~~~ik~~~~--~-v---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I  280 (377)
                         ..++....-  . +   ...+.+ +......                    ..... |-+         ..++.+.|
T Consensus       147 ---~~~~~~~a~~~~~i~~~~~~f~~s~~~~~~~--------------------~~~~~-~di---------~a~~~~~v  193 (276)
T 4ehu_A          147 ---LGSISMNSQNEVSISSTCTVFAESEVISHLS--------------------ENAKI-EDI---------VAGIHTSV  193 (276)
T ss_dssp             ---HHHHHTTCSSCCCCCCCSHHHHHHHHHHHHH--------------------TTCCH-HHH---------HHHHHHHH
T ss_pred             ---hHHHHhcCCCCCCcCCccchhhhhHHHHhhh--------------------ccccH-HHH---------HHHHHHHH
Confidence               111111000  0 0   000000 0000000                    00000 000         01233344


Q ss_pred             HHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          281 YNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       281 ~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .+.+..  .-.+....+.|+|+||.|+.|+++++|++.+.        .+++.+++|++....||+++|.
T Consensus       194 ~~~l~~--~~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~  253 (276)
T 4ehu_A          194 AKRVSS--LVKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAF  253 (276)
T ss_dssp             HHHHHH--HHHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHH
T ss_pred             HHHHHH--HHHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHH
Confidence            443332  12233445789999999999999999987772        2567788999998999999984

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=97.77  E-value=7.3e-05  Score=66.78  Aligned_cols=47  Identities=17%  Similarity=0.383  Sum_probs=38.9

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.|+++||.++-+++.+.+.+.|..        ++..+++++++.-+||+++|..
T Consensus       210 ~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~  256 (270)
T 1hux_A          210 KDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYK  256 (270)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHH
T ss_pred             CeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHH
Confidence            6799999999999999999988833        3556667788889999999854

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=96.96  E-value=0.0015  Score=59.58  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             HHHHHhhhhccccCCCeEEeeehhhhhhhh-------cC-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017124          117 NREKMTQIMFETFNVPAMYVAIQAVLSLYA-------SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT  188 (377)
Q Consensus       117 ~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-------~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~  188 (377)
                      .++.+++.+-+..|++ +.+++..-=|.|+       .+ ..+++|||||+++|.++-+.++.+.  .....++|+-.++
T Consensus        98 N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v~l~  174 (315)
T 1t6c_A           98 NAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVNLT  174 (315)
T ss_dssp             THHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHHHH
T ss_pred             CHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHHHHH
Confidence            4455666666667876 4455533322222       23 5689999999999999999999887  5677899999888


Q ss_pred             HHHH
Q 017124          189 DALM  192 (377)
Q Consensus       189 ~~l~  192 (377)
                      +.+.
T Consensus       175 e~~~  178 (315)
T 1t6c_A          175 ETFF  178 (315)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8763

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=96.82  E-value=0.005  Score=55.31  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=40.3

Q ss_pred             HhhhhccccCCCeEEeeehhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          121 MTQIMFETFNVPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+.+ +.+++| |.+.++.-+++++.     +..+.++|-+|.+ +-...|.+|++..
T Consensus        87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~  142 (292)
T 2gup_A           87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHR  142 (292)
T ss_dssp             HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEEC
T ss_pred             HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEe
Confidence            55666 778887 78999999998873     5678999999986 6677788998764

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=96.41  E-value=0.019  Score=51.30  Aligned_cols=51  Identities=18%  Similarity=0.006  Sum_probs=41.2

Q ss_pred             hhcCceeccC-CcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          295 LYGNIVLSGG-STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       295 l~~nIvl~GG-~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      -+++|+++|| .+..|++.++|.+.+.-.     ..+++-++++++...+||+++++
T Consensus       236 ~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~~  287 (287)
T 2ews_A          236 KTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK  287 (287)
T ss_dssp             TCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred             CCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhCC
Confidence            3457999999 999999999999776442     34677788899999999998763

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=96.30  E-value=0.0015  Score=60.19  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             HHHHhhhhccccCCCeEEeee---hhhhhhhhc----C----CceEEEEeCCCCceEEEEeeC--Ceec--CcceEEEcc
Q 017124          118 REKMTQIMFETFNVPAMYVAI---QAVLSLYAS----G----RTTGIVLDSGDGVSHTVPIYE--GYAL--PHAILRLDL  182 (377)
Q Consensus       118 ~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~----g----~~~~lVVDiG~~~t~v~~v~~--g~~~--~~~~~~~~~  182 (377)
                      ++.+++.+-+.+|++ +.+++   ++.++.++.    .    ..+++|+|||+++|.++.+.+  +.+.  .......|+
T Consensus       104 ~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Slpl  182 (343)
T 3cer_A          104 REEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNI  182 (343)
T ss_dssp             HHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESC
T ss_pred             HHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEEeh
Confidence            345666665666765 34444   333333322    2    256999999999999998877  4321  125678899


Q ss_pred             cHHHHHHHH
Q 017124          183 AGRDLTDAL  191 (377)
Q Consensus       183 GG~~i~~~l  191 (377)
                      |+..+++.+
T Consensus       183 G~v~lt~~~  191 (343)
T 3cer_A          183 GSVRMTERH  191 (343)
T ss_dssp             CHHHHHHHT
T ss_pred             hHHHHHHHh
Confidence            999998876

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=96.27  E-value=0.06  Score=48.94  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ +-...|.||+++.
T Consensus        94 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~  146 (321)
T 3vgl_A           94 QRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRR  146 (321)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred             hhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence            456787 88999999988762       3578899999977 7777788998764

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=96.26  E-value=0.047  Score=49.83  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCC-CceEEEECCCCCccccchhhhhhh
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPS-SMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      .|+|.||.+..+-|.+++++.+.+.... ...+++..+.-...+.-+||+.++
T Consensus       272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~  324 (327)
T 4db3_A          272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN  324 (327)
T ss_dssp             EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred             EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence            5889999988877888888888776532 224566655555667788988765

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=96.09  E-value=0.054  Score=49.25  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=36.0

Q ss_pred             ccc-CCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETF-NVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~-~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+ ++| |.+.++.-+++++.       +..+.++|-+|.+ +-...|.+|+++.
T Consensus       115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~  168 (321)
T 3r8e_A          115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFI  168 (321)
T ss_dssp             HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEec
Confidence            456 776 78999999987752       4578999999987 7777888998875

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=96.03  E-value=0.25  Score=44.23  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=38.1

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .|+|.||.+..+.|.+++++.+......  .+++..+.....+.-+||+.++.
T Consensus       240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~  290 (297)
T 4htl_A          240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFL  290 (297)
T ss_dssp             EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHH
T ss_pred             EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHH
Confidence            5899999999899999999999865543  34555554456778899887664

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=95.89  E-value=0.036  Score=53.78  Aligned_cols=70  Identities=19%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             HHHHhhhhccccCCCeEEeeehh---hhhhh----hcCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 017124          118 REKMTQIMFETFNVPAMYVAIQA---VLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA  190 (377)
Q Consensus       118 ~~~l~~~lfe~~~~~~v~~~~~~---~~a~~----~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~  190 (377)
                      ...+++.+-+.+|++ |.+++..   -+..+    +....+++|+|||+++|.++.+.+|.+.  .....++|.-.+++.
T Consensus       102 ~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~  178 (508)
T 3hi0_A          102 GPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRLSEQ  178 (508)
T ss_dssp             HHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEehhhc
Confidence            345666665667776 4455432   22222    2234578999999999999999999887  567789999777764

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=95.80  E-value=0.024  Score=55.10  Aligned_cols=71  Identities=10%  Similarity=0.077  Sum_probs=49.8

Q ss_pred             HHHHhhhhccccCCCeEEeeehhh---hhhhh----cC-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 017124          118 REKMTQIMFETFNVPAMYVAIQAV---LSLYA----SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD  189 (377)
Q Consensus       118 ~~~l~~~lfe~~~~~~v~~~~~~~---~a~~~----~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~  189 (377)
                      +..+++.+-+..|++ |.+++..-   +...+    .. ...++|+|||+++|.++...++.+.  .....++|.-.+++
T Consensus        98 ~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrlte  174 (513)
T 1u6z_A           98 ATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQ  174 (513)
T ss_dssp             HHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHHHHH
Confidence            355666666777875 44555332   22222    12 2379999999999999999888887  56778999988877


Q ss_pred             HH
Q 017124          190 AL  191 (377)
Q Consensus       190 ~l  191 (377)
                      .+
T Consensus       175 ~f  176 (513)
T 1u6z_A          175 LY  176 (513)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=95.79  E-value=0.0046  Score=56.30  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=48.5

Q ss_pred             HHHhhhhccccCCCeEEeeeh---hhhhhh----hcC--CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 017124          119 EKMTQIMFETFNVPAMYVAIQ---AVLSLY----ASG--RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD  189 (377)
Q Consensus       119 ~~l~~~lfe~~~~~~v~~~~~---~~~a~~----~~g--~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~  189 (377)
                      ..+++.+-+.+|++ +.+++.   +.++.+    +..  ..+++|+|||+++|.++.+.++.+.  .....++|.-.+++
T Consensus        92 ~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e  168 (315)
T 3mdq_A           92 QVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQRLID  168 (315)
T ss_dssp             HHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHHHHH
T ss_pred             HHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhHHHH
Confidence            45556665667775 344443   222222    122  3579999999999999999999887  66788999987776


Q ss_pred             HH
Q 017124          190 AL  191 (377)
Q Consensus       190 ~l  191 (377)
                      .+
T Consensus       169 ~f  170 (315)
T 3mdq_A          169 RF  170 (315)
T ss_dssp             HS
T ss_pred             Hh
Confidence            55

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=95.78  E-value=0.1  Score=46.97  Aligned_cols=53  Identities=13%  Similarity=0.080  Sum_probs=36.0

Q ss_pred             CceeccCCc-CC-cChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          298 NIVLSGGST-MF-PGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       298 nIvl~GG~s-~i-~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .|+|.||.+ .. +-|.+++++.+.+........++..+.-...+..+||+.++-
T Consensus       240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~  294 (302)
T 3vov_A          240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY  294 (302)
T ss_dssp             EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred             EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence            588888888 66 448889999998776433233354444445677889887763

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=95.52  E-value=0.041  Score=50.00  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ +-...+.+|+.+.
T Consensus       106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~  158 (326)
T 2qm1_A          106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH  158 (326)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence            445777 78999999988762       4578999999987 6677788998765

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=95.45  E-value=0.068  Score=47.62  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=36.4

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      .|+|.||.+..+-|.+++++.+.+.... ..+++..+.....+...||+.++
T Consensus       236 ~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~~~~~~a~~~GAa~l~  286 (289)
T 2aa4_A          236 CVVVGGSVGLAEGYLALVETYLAQEPAA-FHVDLLAAHYRHDAGLLGAALLA  286 (289)
T ss_dssp             EEEEEHHHHTSTTHHHHHHHHHTTSCGG-GCCEEEECSCSSCHHHHHHHHHH
T ss_pred             EEEEeCcccccHHHHHHHHHHHHHhcCc-cCCEEEECCCCCchHHHHHHHHH
Confidence            5889999887788999999988875322 24455555445567788988765

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=95.24  E-value=0.051  Score=49.96  Aligned_cols=56  Identities=9%  Similarity=0.069  Sum_probs=41.0

Q ss_pred             HHHhhcCceeccC-CcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017124          292 RKDLYGNIVLSGG-STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA  349 (377)
Q Consensus       292 ~~~l~~nIvl~GG-~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a  349 (377)
                      ++.-+++|+++|| .++.|++.+.|.+.|.---..  .+++.-+++++++-.+||++++
T Consensus       302 ~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~  358 (360)
T 2i7n_A          302 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL  358 (360)
T ss_dssp             HHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred             HHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence            3444568999999 999999999999988521111  2345556678999999998864

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=94.33  E-value=0.26  Score=45.81  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             cccCCCeEEeeehhhhhhhhc---C--CceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS---G--RTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~---g--~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.   |  ..+.++|-+|.+ +-...|.+|++..
T Consensus       186 ~~~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtG-iG~giv~~G~l~~  236 (380)
T 2hoe_A          186 EKYGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKG-IGAGIIIDGELYR  236 (380)
T ss_dssp             HHHCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSS-CEEEEEETTEECC
T ss_pred             HHhCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCc-eEEEEEECCEEec
Confidence            446776 88999999988763   3  378999999986 6677788998764

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=94.10  E-value=0.42  Score=41.99  Aligned_cols=19  Identities=26%  Similarity=0.349  Sum_probs=16.7

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      .++||+|-+++|+|+..++
T Consensus         4 lL~IDIGNT~iK~gl~d~~   22 (266)
T 3djc_A            4 ILCIDVGNSHIYGGVFDGD   22 (266)
T ss_dssp             EEEEEECSSEEEEEEEETT
T ss_pred             EEEEEECCCeEEEEEEECC
Confidence            7999999999999988653

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=94.04  E-value=0.23  Score=45.44  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ +-...|.+|++..
T Consensus       129 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~  181 (343)
T 2yhw_A          129 DTLHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH  181 (343)
T ss_dssp             HHHCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred             HHHCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence            345777 78999999888763       3468899999976 6677788988764

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=93.48  E-value=0.043  Score=49.60  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=23.6

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecC
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      .++++||||+++|+|+|+.+|+++.
T Consensus       127 ~~~llvDIGsTTTDIipi~~G~pl~  151 (334)
T 3cet_A          127 ENCILVDMGSTTTDIIPIVEGKVVA  151 (334)
T ss_dssp             SSEEEEEECSSCEEEEEEETTEECC
T ss_pred             CCEEEEEcCcchhhhhhhcCCeecc
Confidence            6799999999999999999999985

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=92.68  E-value=1.1  Score=41.75  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017124          127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP  174 (377)
Q Consensus       127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~  174 (377)
                      +.+++| |.+.++.-+++++.       +..+.++|-+|.+ +-...|.||++..
T Consensus       184 ~~~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~  236 (406)
T 1z6r_A          184 QHTGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVITDGHLLH  236 (406)
T ss_dssp             HHHSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEETT
T ss_pred             HHHCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence            446777 78899999988753       3568999999976 6677788998764

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=91.84  E-value=1  Score=39.58  Aligned_cols=19  Identities=21%  Similarity=0.198  Sum_probs=16.1

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      .++||+|-+++|+|+..++
T Consensus         2 lL~IDIGNT~ik~gl~~~~   20 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEEG   20 (268)
T ss_dssp             EEEEEECSSEEEEEEEETT
T ss_pred             EEEEEECcCcEEEEEEECC
Confidence            4789999999999988543

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=90.29  E-value=0.83  Score=39.69  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=16.5

Q ss_pred             CEEEeCCCCceEEeeeCCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~   27 (377)
                      .++||+|-+++|+|+..++
T Consensus         5 ~L~IDIGNT~ik~gl~~~~   23 (249)
T 3bex_A            5 YLLVDVGNTHSVFSITEDG   23 (249)
T ss_dssp             EEEEEECSSEEEEEEESSS
T ss_pred             EEEEEECCCeEEEEEEECC
Confidence            5889999999999988643

>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*

Probab=89.22  E-value=1.2  Score=42.17  Aligned_cols=89  Identities=11%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhhcccccC-CCCCCcEEEEeCCCCCh------HHHHHHhhhhcccc---CC--CeEEeeehh-------hh
Q 017124           82 DDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPK------ANREKMTQIMFETF---NV--PAMYVAIQA-------VL  142 (377)
Q Consensus        82 ~~~~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~------~~~~~l~~~lfe~~---~~--~~v~~~~~~-------~~  142 (377)
                      +.++.+++.+. +.... ..+..|+.+..-..+..      ..++.+++.+-+.+   ++  ..+.+++..       ++
T Consensus        89 ~~l~~Ll~~a~-~~vp~~~~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~  167 (452)
T 3zx3_A           89 AYLAECMKMST-ERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWIT  167 (452)
T ss_dssp             HHHHHHHHHHH-HHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHcCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHH
Confidence            34555655553 22211 12456777665443311      12344444443333   22  467777633       33


Q ss_pred             hhhhcCC------ceEEEEeCCCCceEEEEeeCCe
Q 017124          143 SLYASGR------TTGIVLDSGDGVSHTVPIYEGY  171 (377)
Q Consensus       143 a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~  171 (377)
                      +.|..|.      .+..++|+|+++|+|+-..++.
T Consensus       168 vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~  202 (452)
T 3zx3_A          168 INYLLGRFKTPGGSTFGALDLGGASTQITFVPLNS  202 (452)
T ss_dssp             HHHHTTTTC---CCCCEEEEECSSEEEEEECCSSC
T ss_pred             HHhhhccccCCCCCceEEEecCCCceEEEeccCCC
Confidence            3344452      5677889999999999665553

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=88.03  E-value=3.7  Score=36.27  Aligned_cols=69  Identities=16%  Similarity=0.065  Sum_probs=46.6

Q ss_pred             cEEEEeCCCCChHHHHHHhhhhccccCC-CeEEeeehhhhhhhh-cCCceEEEEeCCCCceEEEEeeCCeec
Q 017124          104 PVLLTEAPLNPKANREKMTQIMFETFNV-PAMYVAIQAVLSLYA-SGRTTGIVLDSGDGVSHTVPIYEGYAL  173 (377)
Q Consensus       104 ~vvl~~p~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~~~lVVDiG~~~t~v~~v~~g~~~  173 (377)
                      .+-+..|-.. ......+.+.+-+.++. ..+.+.++.-+|+++ .+..+++++=+|.+..-...+.||+..
T Consensus        62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~  132 (291)
T 1zbs_A           62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKA  132 (291)
T ss_dssp             EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEE
T ss_pred             EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEE
Confidence            4666677554 22223444444445665 368999999999998 567788888888876555566799875

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=82.17  E-value=14  Score=32.69  Aligned_cols=89  Identities=12%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhhcccccCCCCCC---cEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhc-CCceEEEEe
Q 017124           81 WDDMEKIWHHTFYNELRVAPEEH---PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS-GRTTGIVLD  156 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~---~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g~~~~lVVD  156 (377)
                      ++.+...++.++ +..+.+..+.   .+-+..|-.........+ +..|.. +. .+.+.++.-+++++. +..++++|-
T Consensus        53 ~~~l~~~i~~~l-~~~~~~~~~i~~~~igig~pG~v~~~~~~~l-~~~~~~-~~-pv~v~NDa~aaa~ge~~~~~~v~v~  128 (305)
T 1zc6_A           53 WQAVLSTLEAAF-QQAGLPAAPASACAIGLGLSGVHNRQWAGEF-ESQAPG-FA-RLSLATDGYTTLLGAHGGQPGIIVA  128 (305)
T ss_dssp             HHHHHHHHHHHH-HHTTCCCCCGGGEEEEEEESCCCTTSHHHHH-HHTCCC-CS-EEEEECHHHHHHHHHTTTSSEEEEE
T ss_pred             HHHHHHHHHHHH-HhcCCChhhhccceEEEEecCCCchHHHHHH-HHhCCC-Cc-eEEEECCHHHHHHhhcCCCCeEEEE
Confidence            345555555554 3334433332   366777765443322222 222221 33 488999999998874 567888898


Q ss_pred             CCCCceEEEEeeCCeec
Q 017124          157 SGDGVSHTVPIYEGYAL  173 (377)
Q Consensus       157 iG~~~t~v~~v~~g~~~  173 (377)
                      +|.+..-...+.+|...
T Consensus       129 ~GTGigg~~i~~~G~~~  145 (305)
T 1zc6_A          129 LGTGSIGEALYPDGSHR  145 (305)
T ss_dssp             ESSSEEEEEECTTSCEE
T ss_pred             ecCCeEEEEEeCCCcEE
Confidence            98886434434488654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	377
d2fxua2	225	c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI	1e-116
d1k8ka2	258	c.55.1.1 (A:161-418) Actin-related protein 3, Arp3	1e-107
d1k8kb1	190	c.55.1.1 (B:154-343) Actin-related protein 2, Arp2	3e-81
d2fxua1	140	c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId:	5e-76
d1k8ka1	158	c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {	8e-73

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  336 bits (862), Expect = e-116
 Identities = 191/225 (84%), Positives = 210/225 (93%)

Query: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAER 208
           RTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF TTAER
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 209 EIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSL 268
           EIVRD+KEKL YVALD+E E+  A SSS++EKSYELPDGQVITIG ERFRCPE LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMK 328
           IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM +EITALAPS+MK
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 329 IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVH 373
           IK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GP+IVH
Sbjct: 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  314 bits (806), Expect = e-107
 Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 24/251 (9%)

Query: 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREI 210
           TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L +R          E 
Sbjct: 4   TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63

Query: 211 VRDMKEKLAYVALDYEQELE-AAKSSSAVEKSYEL-----PDGQVITIGAERFRCPEVLF 264
            + +KE+ +YV  D  +E        S   K Y            I +G ERF  PE+ F
Sbjct: 64  AKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFF 123

Query: 265 QPSLIGMEAA-GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT--- 320
            P     +    I E     I  C +D+R+ LY NIVLSGGSTMF     R+ R++    
Sbjct: 124 HPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTV 183

Query: 321 -------------ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDES 367
                         L P  + ++V+    ++Y+VW GGS+LAS   F Q+  +K +Y+E 
Sbjct: 184 DARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEI 243

Query: 368 GPAIV-HRKCF 377
           GP+I  H   F
Sbjct: 244 GPSICRHNPVF 254

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  245 bits (625), Expect = 3e-81
 Identities = 88/177 (49%), Positives = 123/177 (69%)

Query: 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211
           G+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T  L+K+L  RGY+F  +A+ E V
Sbjct: 1   GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60

Query: 212 RDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGM 271
           R +KEKL YV  + EQE + A  ++ + +SY LPDG++I +G ERF  PE LFQP LI +
Sbjct: 61  RMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINV 120

Query: 272 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMK 328
           E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ RE+  L    + 
Sbjct: 121 EGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVL 177

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  229 bits (585), Expect = 5e-76
 Identities = 132/139 (94%), Positives = 137/139 (98%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTL
Sbjct: 2   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61

Query: 70  KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
           KYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETF
Sbjct: 62  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121

Query: 130 NVPAMYVAIQAVLSLYASG 148
           NVPAMYVAIQAVLSLYASG
Sbjct: 122 NVPAMYVAIQAVLSLYASG 140

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  221 bits (565), Expect = 8e-73
 Identities = 64/153 (41%), Positives = 85/153 (55%), Gaps = 9/153 (5%)

Query: 9   PLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--------RPRHTGVMVGMGQKDAYVGDEA 60
             V D GTG  K G+AG+  P+ + PS +               VM G+   D ++GDEA
Sbjct: 5   ACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEA 64

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             K      K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE 
Sbjct: 65  IEKPTY-ATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREY 123

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGI 153
             +IMFE+FNVP +Y+A+QAVL+L AS  +  +
Sbjct: 124 TAEIMFESFNVPGLYIAVQAVLALAASWTSRQV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	377
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	100.0
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	100.0
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.97
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	99.45
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	99.35
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	99.16
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.05
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	99.0
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	98.71
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	98.6
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	98.56
d2fsja1	161	Hypothetical protein Ta0583 {Archaeon Thermoplasma	98.5
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.6
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	95.48
d2d0oa3	203	Diol dehydratase-reactivating factor large subunit	94.98
d1nbwa3	202	ATPase domain of the glycerol dehydratase reactiva	94.93
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	93.85
d1u6za3	177	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	93.3
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	93.24
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	92.53
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	89.88
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	88.2
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	85.05
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	82.1
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	81.33
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	80.67

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-51  Score=361.78  Aligned_cols=225  Identities=85%  Similarity=1.339  Sum_probs=216.3

Q ss_pred             CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHH
Q 017124          149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQE  228 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~  228 (377)
                      ++||||||+|++.|+|+||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+.+|++..+...+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            57999999999999999999999999999999999999999999999999998888888899999999999999999888


Q ss_pred             HHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCC
Q 017124          229 LEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF  308 (377)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i  308 (377)
                      .............|.+|||+.+.++.+|+.++|.||+|..++.+..+|+++|.++|.+||.|.|+.|++||+||||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            87777777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccc
Q 017124          309 PGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVH  373 (377)
Q Consensus       309 ~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~  373 (377)
                      |||.+||++||.++.+...+++++.+++|++++|+|||++|++.+|+++||||+||+|+|++||+
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999999999889999999999999999999999999999999999999999999985

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.9e-49  Score=351.86  Aligned_cols=228  Identities=36%  Similarity=0.665  Sum_probs=204.2

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQEL  229 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~  229 (377)
                      -||||||+|++.|+|+||+||+++.++..++++||++++++|+++|.+++....+..+.+.++.+|+++|++..|+.++.
T Consensus         3 ~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~lt~~L~~~L~~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e~   82 (258)
T d1k8ka2           3 LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEF   82 (258)
T ss_dssp             CCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred             CEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhHHhhhcccccchHHHH
Confidence            58999999999999999999999999999999999999999999999999988888888999999999999999998877


Q ss_pred             HHhccC-CCcceeEEcC-----CCcEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceec
Q 017124          230 EAAKSS-SAVEKSYELP-----DGQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLS  302 (377)
Q Consensus       230 ~~~~~~-~~~~~~~~~~-----~~~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~  302 (377)
                      +..... ......+..+     ++..+.++.+|+.++|+||.|+.++.+ ..+|+++|.++|.+||+|.|+.|++||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~  162 (258)
T d1k8ka2          83 NKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLS  162 (258)
T ss_dssp             HHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEE
T ss_pred             HhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEe
Confidence            654332 2234455554     467889999999999999999988765 578999999999999999999999999999


Q ss_pred             cCCcCCcChHHHHHHHHHhcC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhh
Q 017124          303 GGSTMFPGIADRMSREITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE  366 (377)
Q Consensus       303 GG~s~i~gl~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e  366 (377)
                      ||+|++|||.+||++||++.+                |...++++..++++++++|+|||++|++++|+++||||+||+|
T Consensus       163 GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l~~f~~~~Itk~eY~E  242 (258)
T d1k8ka2         163 GGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEE  242 (258)
T ss_dssp             SGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHHH
T ss_pred             cCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcCccHHhheecHHHHhh
Confidence            999999999999999997653                3445678899999999999999999999999999999999999


Q ss_pred             cCCccc-ccccC
Q 017124          367 SGPAIV-HRKCF  377 (377)
Q Consensus       367 ~G~~~~-~~k~~  377 (377)
                      +|++|| +||||
T Consensus       243 ~G~~iv~~rk~f  254 (258)
T d1k8ka2         243 IGPSICRHNPVF  254 (258)
T ss_dssp             HCGGGGGCCCCC
T ss_pred             hChHHHhcCCCc
Confidence            999999 68898

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-36  Score=257.02  Aligned_cols=174  Identities=51%  Similarity=0.909  Sum_probs=165.5

Q ss_pred             EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHH
Q 017124          152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEA  231 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~  231 (377)
                      |||||+|++.|+|+||+||+++.++..++++||+++++++.++|.+++..+.+..+...++++|++.|+++.++.++...
T Consensus         1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~   80 (190)
T d1k8kb1           1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKL   80 (190)
T ss_dssp             CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHH
T ss_pred             CEEEEcCCCcEEEEEeECCEEcccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHHHh
Confidence            68999999999999999999999999999999999999999999999888887778899999999999999999888877


Q ss_pred             hccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcCh
Q 017124          232 AKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI  311 (377)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl  311 (377)
                      ..........|.+|||+.+.++.+|+.++|.||+|+..+.+..+|+++|.++|.+||.|.|+.|++||+||||+|++|||
T Consensus        81 ~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf  160 (190)
T d1k8kb1          81 ALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGL  160 (190)
T ss_dssp             HHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTH
T ss_pred             hhcccceeeeeecCCCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCH
Confidence            76667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q 017124          312 ADRMSREITALAPS  325 (377)
Q Consensus       312 ~~rl~~eL~~~~~~  325 (377)
                      .+||++||+++.|.
T Consensus       161 ~~RL~~EL~~l~p~  174 (190)
T d1k8kb1         161 PSRLERELKQLYLE  174 (190)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhH
Confidence            99999999998764

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.6e-31  Score=218.48  Aligned_cols=145  Identities=44%  Similarity=0.748  Sum_probs=128.1

Q ss_pred             CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc--------cccCCCccceeccccccccccceeeceecCCcc
Q 017124            7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV   78 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i   78 (377)
                      .|+||||+||+++|+||+|++.|++++||+++.++....        ..+....++++|+++... ....+.+|+++|.+
T Consensus         3 ~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig~e~~~~-~~~~~~~pi~~G~i   81 (158)
T d1k8ka1           3 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK-PTYATKWPIRHGIV   81 (158)
T ss_dssp             SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSC-TTSEEECCEETTEE
T ss_pred             CCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccCchhcccccCCCccceecChhhhhC-CCccccccccCCeE
Confidence            468999999999999999999999999999987654332        223344578899998754 34688999999999


Q ss_pred             CCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceE
Q 017124           79 SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG  152 (377)
Q Consensus        79 ~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~  152 (377)
                      .|||.++.+|+++|.+.|.++++++|+++++|+++++..|++++|++||.|++|++++..++++++|++|++++
T Consensus        82 ~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~  155 (158)
T d1k8ka1          82 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ  155 (158)
T ss_dssp             SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred             ecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence            99999999999999899999999999999999999999999999999999999999999999999999998764

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.1e-30  Score=210.87  Aligned_cols=140  Identities=94%  Similarity=1.494  Sum_probs=126.8

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHHHH
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIW   88 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~~   88 (377)
                      .||||+||+++|+||+|++.|++++|+++++++......+....+.++|+++........+.+|+++|.+.|||.++.+|
T Consensus         1 avViD~Gs~~~k~G~age~~P~~~~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~~~~~~~p~~~g~v~dwd~~e~~~   80 (140)
T d2fxua1           1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW   80 (140)
T ss_dssp             CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHHHH
T ss_pred             CEEEECCCCeEEEeeCCCCCcceEeccceeeecccccccCccccceeeChhHhhccccccccCcCcCCcccCHHHHHHHH
Confidence            48999999999999999999999999999999887776666667788999988777778899999999999999999999


Q ss_pred             HHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC
Q 017124           89 HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  148 (377)
Q Consensus        89 ~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g  148 (377)
                      +++|.+.|.++++++|+++++|++++...|+.++|++||.+++|++++.+++++++|++|
T Consensus        81 ~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G  140 (140)
T d2fxua1          81 HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG  140 (140)
T ss_dssp             HHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred             HHhhhhhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence            999988999999999999999999999999999999999999999999999999999987

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=8.4e-14  Score=116.82  Aligned_cols=141  Identities=14%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHH
Q 017124          151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE  230 (377)
Q Consensus       151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~  230 (377)
                      ..+|||||+++|+++.+.+|.++  ....+++||+++++.+.+.+.         ...+.+|++|.+++.+..+..    
T Consensus         8 Gv~vvDiG~~tt~i~i~~~G~l~--~~~~i~~GG~~iT~~Ia~~l~---------i~~~~AE~iK~~~g~~~~~~~----   72 (191)
T d1e4ft2           8 GVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIKDVSAVLD---------TSFEESERLIITHGNAVYNDL----   72 (191)
T ss_dssp             CEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHHHHHHT---------CCHHHHHHHHHHHCCSCCTTC----
T ss_pred             CEEEEEeCCCcEEEEEEECCeEE--EEEEEeeChHHHHHHHHHHhc---------ccHHHHHHHHhhccccccccc----
Confidence            46899999999999999999999  667889999999999998772         245679999999887643311    


Q ss_pred             HhccCCCcceeEEcCCC-cEEeeCCcc-ccccccCCCCccCCCCCCChHHHHHHHHhcC----ChhHHHHhhcCceeccC
Q 017124          231 AAKSSSAVEKSYELPDG-QVITIGAER-FRCPEVLFQPSLIGMEAAGIHETTYNSIMKC----DVDIRKDLYGNIVLSGG  304 (377)
Q Consensus       231 ~~~~~~~~~~~~~~~~~-~~i~v~~~~-~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~----~~~~~~~l~~nIvl~GG  304 (377)
                           ..........++ ....+.... ....+..+..         +.+.+.+.+..+    ..+....+..+|+||||
T Consensus        73 -----~~~~i~~~~~~~~~~~~~~~~~l~~ii~~~~~e---------i~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGG  138 (191)
T d1e4ft2          73 -----KEEEIQYRGLDGNTIKTTTAKKLSVIIHARLRE---------IMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGG  138 (191)
T ss_dssp             -----CCCEEEEECTTSSCEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHC------CGGGCEEEESG
T ss_pred             -----cchhcccccccCCCcccccHHHHHHHHHHHHHH---------HHHHHHHHHHhhccchhhhcccccCceEEEecc
Confidence                 011111111111 111111000 0001111111         333333334332    22233445678999999


Q ss_pred             CcCCcChHHHHHHHHH
Q 017124          305 STMFPGIADRMSREIT  320 (377)
Q Consensus       305 ~s~i~gl~~rl~~eL~  320 (377)
                      +|++|||.+.+++.|.
T Consensus       139 gs~l~gl~~~l~~~l~  154 (191)
T d1e4ft2         139 GAKIPRINELATEVFK  154 (191)
T ss_dssp             GGGSTTHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHHHC
Confidence            9999999999998884

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.6e-12  Score=109.14  Aligned_cols=174  Identities=17%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQEL  229 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~  229 (377)
                      .+.||+|+|+++|+|+.+..|...  .....+.||.+++..+...+........   ........+..............
T Consensus         7 ~gvlV~DiGGGT~Dvsi~~~g~~~--~~~~~~~gg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   81 (196)
T d1jcea2           7 SGNMVVDIGGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETYRVAI---GERTAERVKIEIGNVFPSKENDE   81 (196)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHHCEEC---CHHHHHHHHHHHCBCSCCHHHHH
T ss_pred             CceEEEEcCCCcEEEEEEEcCCEe--EEeeecCCCcccccchhhhhhhhhcccc---cchhHHHHHHHHhhhhhhhhccc
Confidence            467999999999999999999887  5567899999999999887754321111   11222233332222221111111


Q ss_pred             HHhccCCCcceeEEcCCCcEEeeC---CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHH-HhhcCceeccCC
Q 017124          230 EAAKSSSAVEKSYELPDGQVITIG---AERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRK-DLYGNIVLSGGS  305 (377)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~i~v~---~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-~l~~nIvl~GG~  305 (377)
                      .     ..........++......   .......+.++..         +.+.|.+++..+...... ...+.|+||||+
T Consensus        82 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGs  147 (196)
T d1jcea2          82 L-----ETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVA---------IVESVRTTLEKTPPELVSDIIERGIFLTGGG  147 (196)
T ss_dssp             C-----EEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHCEEEESGG
T ss_pred             c-----ceeeeeeeccCCCccccccchhhHHHHHHHHHHH---------HHHHHHHHHHHhhccccccccccceEEeCch
Confidence            0     001111122222211111   1111222333333         677777888877766554 345789999999


Q ss_pred             cCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          306 TMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       306 s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      |++|++++++++.+..        .+....+|..+++.||+++++
T Consensus       148 S~ip~v~~~l~~~fg~--------~v~~~~~P~~aVA~GAai~~~  184 (196)
T d1jcea2         148 SLLRGLDTLLQKETGI--------SVIRSEEPLTAVAKGAGMVLD  184 (196)
T ss_dssp             GCSBTHHHHHHHHHSS--------CEEECSSTTTHHHHHHHHGGG
T ss_pred             hcchhHHHHHHHHHCc--------CCccCCChHHHHHHHHHHHHH
Confidence            9999999999988832        344456889999999999864

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.16  E-value=8.7e-12  Score=104.85  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=99.4

Q ss_pred             CCceEEEEeCCCCceEEEEee------CCee-cCcceEEEcccHHHHHHHHHHHHHH-----cCCCCcchhH-----HHH
Q 017124          148 GRTTGIVLDSGDGVSHTVPIY------EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REI  210 (377)
Q Consensus       148 g~~~~lVVDiG~~~t~v~~v~------~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~  210 (377)
                      |..+-+|+|+|+++++++.+.      ++.. +........+||+++++.|.+++.+     .+.++.....     ...
T Consensus         1 g~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~   80 (198)
T d1dkgd2           1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA   80 (198)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence            345779999999999998774      1211 1122233578999999999988753     2333322111     223


Q ss_pred             HHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------C-CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHH
Q 017124          211 VRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------D-GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNS  283 (377)
Q Consensus       211 ~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~  283 (377)
                      +|+.|+.++.                .....+.+|      + +..+.+.-.|..+.+ +++|-     ...+.++|.++
T Consensus        81 ~e~~K~~Ls~----------------~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~-~~~~~-----~~~~~~~i~~~  138 (198)
T d1dkgd2          81 AEKAKIELSS----------------AQQTDVNLPYITADATGPKHMNIKVTRAKLES-LVEDL-----VNRSIELLKVA  138 (198)
T ss_dssp             HHHHHHHTTS----------------SSEEEEEEEEEEEETTEEEEEEEEEEHHHHHH-HSHHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHhcC----------------CCeEEEEEeeeecCCCCCceEEEEEcHHHHHH-HHHHH-----HHHHHHHHHHH
Confidence            4555554431                111122221      1 112222222222211 22220     11266677777


Q ss_pred             HhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          284 IMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       284 i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      +.+...+  ..-++.|+|+||+|++|.+.++|++.+..        ++....+|..++..||+++|+.
T Consensus       139 l~~a~~~--~~~Id~v~lvGG~sr~p~l~~~i~~~f~~--------~~~~~~~p~~aVa~GAa~~aa~  196 (198)
T d1dkgd2         139 LQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPRKDVNPDEAVAIGAAVQGGV  196 (198)
T ss_dssp             HHTTTCC--TTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred             HHHhCCC--hhHCcEEEEEcCccCCHHHHHHHHHHHCC--------CCCCCCChHHHHHHHHHHHHHh
Confidence            7655433  22367899999999999999999988742        2334457889999999999875

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=3.8e-11  Score=100.54  Aligned_cols=172  Identities=18%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             CceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchhH-----HHHHHHHH
Q 017124          149 RTTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMK  215 (377)
Q Consensus       149 ~~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik  215 (377)
                      ..+-+|+|+|+++++++.+.  ++.. +..+.....+||+++++.+.+++.++     +........     ...+|+.|
T Consensus         4 e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K   83 (193)
T d1bupa2           4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAK   83 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHh
Confidence            35789999999999988652  2321 12222345799999999998877431     222221111     12344444


Q ss_pred             HhcceeecCHHHHHHHhccCCCcceeEEc---CCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH
Q 017124          216 EKLAYVALDYEQELEAAKSSSAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIR  292 (377)
Q Consensus       216 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~  292 (377)
                      +.++.                .....+.+   .++....+.-.|... |.++.|-     ...+.+.|.+++.+..  ..
T Consensus        84 ~~ls~----------------~~~~~~~~~~~~~~~~~~~~itr~~~-e~~~~~~-----~~~~~~~i~~~l~~~~--~~  139 (193)
T d1bupa2          84 RTLSS----------------STQASIEIDSLYEGIDFYTSITRARF-EELNADL-----FRGTLDPVEKALRDAK--LD  139 (193)
T ss_dssp             HHHTT----------------SSEEEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHTHHHHHHHHHHHT--CC
T ss_pred             hccCC----------------CceEEEEEecccCCCccceEEcHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CC
Confidence            43331                11122222   223222222222222 2233330     0113444444444322  11


Q ss_pred             HHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017124          293 KDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL  351 (377)
Q Consensus       293 ~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l  351 (377)
                      ..-++.|+++||+|++|.+++.+++.+...       ++..+.+|+.++..||+++|+.
T Consensus       140 ~~~i~~V~lvGG~sr~p~v~~~i~~~f~~~-------~i~~~~~p~~aVa~GaA~~aa~  191 (193)
T d1bupa2         140 KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAAI  191 (193)
T ss_dssp             GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSCGGGHHHHHHHHHHHH
T ss_pred             HHHCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCCChHHHHHHHHHHHHHh
Confidence            223568999999999998877777555321       2445568899999999999864

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=7.3e-10  Score=87.08  Aligned_cols=131  Identities=12%  Similarity=0.081  Sum_probs=93.4

Q ss_pred             CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHHH
Q 017124            8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD   83 (377)
Q Consensus         8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~   83 (377)
                      +.|.||+||+++.+.+.++.. ....|+..+.....       .....+|+++...    .......+++.++...+.+.
T Consensus         1 ~~iGIDlGTtns~va~~~~~~-v~~~~~~~~~~~~~-------~~~~~~g~~a~~~~~~~~~~~~~~k~~~~~~~~~~~~   72 (137)
T d1jcea1           1 KDIGIDLGTANTLVFLRGKGI-VVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV   72 (137)
T ss_dssp             CEEEEEECSSEEEEEETTTEE-EEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred             CeEEEEcChhhEEEEEeCCCE-EeecCCcceEecCC-------CeEEEEehHHhhhhhhccccceeEEeccCCccCcHHH
Confidence            368999999999998765431 12334444332211       2234456655443    22245677888999999988


Q ss_pred             HHHHHHHhhcccccC-CCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhc
Q 017124           84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS  147 (377)
Q Consensus        84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~  147 (377)
                      .+.++.++....... ......+++++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa-~~AGl~vv~li~EPtAAAiGa  136 (137)
T d1jcea1          73 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG-LEAGASKVFLIEEPMAAAIGS  136 (137)
T ss_dssp             HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCSEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHhCC
Confidence            888888876433222 234577999999999999999988877 889999999999999999876

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.6e-09  Score=86.36  Aligned_cols=48  Identities=13%  Similarity=0.034  Sum_probs=38.6

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCc-ceEEEcccHHHHHHHHHHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTE  197 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~~  197 (377)
                      .+.||||+|+++|+++.+.++..... +....+.||.++++.+++.+..
T Consensus         7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~   55 (163)
T d2zgya2           7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSL   55 (163)
T ss_dssp             CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCcEEEEEEcCCeEEEEEeeccccccchHHHHHHHHhhHH
Confidence            57899999999999998877655433 3446699999999999988853

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=3.7e-08  Score=81.23  Aligned_cols=64  Identities=8%  Similarity=-0.024  Sum_probs=49.6

Q ss_pred             HHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC
Q 017124           83 DMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR  149 (377)
Q Consensus        83 ~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~  149 (377)
                      ....+++++.   .+.++.  .-..+|+++|+.++..+|+.+.+.+ +.+|++.+.++++|.||++++|.
T Consensus       116 l~a~~l~~l~~~a~~~~~~--~~~~~VitvPa~f~~~qr~~~~~Aa-~~AGl~~~~li~EP~AAAl~Ygl  182 (185)
T d1bupa1         116 VSSMVLTKMKEIAEAYLGK--TVTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGL  182 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHhcc
Confidence            3444555543   123332  2356999999999999999888877 88999999999999999999974

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=98.56  E-value=1.3e-08  Score=83.91  Aligned_cols=64  Identities=9%  Similarity=0.003  Sum_probs=49.7

Q ss_pred             HHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC
Q 017124           83 DMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR  149 (377)
Q Consensus        83 ~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~  149 (377)
                      ....+++++.   .+.++..  -..+||++|..++..+|+.+.+.+ +.+|++.+.++++|.||++++|.
T Consensus       113 l~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~f~~~~r~~l~~Aa-~~AG~~~~~li~EP~AAAl~Ygl  179 (183)
T d1dkgd1         113 ISAEVLKKMKKTAEDYLGEP--VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGL  179 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHSSC--CCEEEECBCTTCCHHHHHHHHHHH-HHTTCEESCCCBHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhCCC--CCeEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHhcc
Confidence            3444554443   2334433  357999999999999999888877 78999999999999999999875

>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.50  E-value=6.4e-08  Score=77.80  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             ceEEEEeCCCCceEEEEeeCC--eecCcceEEEcccHHHHHHHHHHHHHHc
Q 017124          150 TTGIVLDSGDGVSHTVPIYEG--YALPHAILRLDLAGRDLTDALMKILTER  198 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g--~~~~~~~~~~~~GG~~i~~~l~~~l~~~  198 (377)
                      .+.+|||||+++|+++.+.++  .+........+.|+.++.+.+++.+..+
T Consensus         6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g~~~i~~~i~~~i~~~   56 (161)
T d2fsja1           6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE   56 (161)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHHHHHHHHHHHHHHHHH
Confidence            568999999999999998765  4454445577999999999998888644

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.60  E-value=0.01  Score=49.57  Aligned_cols=46  Identities=17%  Similarity=0.428  Sum_probs=37.8

Q ss_pred             cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      +.|++.||.++.++|.+++++.|.        .++..++.+..+.-+||+++|.
T Consensus       209 ~~Iv~gGGv~~~~~~~~~l~~~l~--------~~i~~~~~~~~agaiGAA~lA~  254 (259)
T d1huxa_         209 KDVVMTGGVAQNYGVRGALEEGLG--------VEIKTSPLAQYNGALGAALYAY  254 (259)
T ss_dssp             SSEEEESGGGGCHHHHHHHHHHHC--------SCEECCGGGGGHHHHHHHHHHH
T ss_pred             CcEEEEccccccHHHHHHHHHHHC--------CCEEcCCCccHHHHHHHHHHHH
Confidence            469999999999999999988872        3567777777888899999885

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.48  E-value=0.007  Score=47.38  Aligned_cols=131  Identities=15%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc---------cccCCCccceeccccccccccceeeceecCCccC
Q 017124            9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVS   79 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~---------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~   79 (377)
                      .+.||+|-.++|+- .++ .-.+.+||.++.....+.         ....++..+++|+.|....    ..+++...+..
T Consensus         3 iigiD~G~g~tK~~-~~~-~~~~~fPS~v~~~~~~~~~~~~~~~~~~~~~~~~~y~vG~~A~~~~----~~~~~~~dk~~   76 (164)
T d2fsja2           3 VVGLDVGYGDTKVI-GVD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNN----IRVPQGDGRLA   76 (164)
T ss_dssp             EEEEEECSSEEEEE-CGG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSC----CBCCSSTTCTT
T ss_pred             EEEEEcCCcceEEE-ecC-CCEEEEeeeceeccccccccCCCceeEEEEeCCeEEEEccchhhcc----ccccccccccc
Confidence            78899999999974 333 223567988865432221         1112345677887663321    23445555554


Q ss_pred             CHHHHHHHHHHhhcccccCC-CCCCc--EEEEeCCCCChHHHHHHhhhhcc-------------ccCCCeEEeeehhhhh
Q 017124           80 NWDDMEKIWHHTFYNELRVA-PEEHP--VLLTEAPLNPKANREKMTQIMFE-------------TFNVPAMYVAIQAVLS  143 (377)
Q Consensus        80 d~~~~~~~~~~~~~~~L~~~-~~~~~--vvl~~p~~~~~~~~~~l~~~lfe-------------~~~~~~v~~~~~~~~a  143 (377)
                      +.+. ..++..++....... ..+..  +++..|...-..+++.+.+.+..             .+.+..+.+.+++..|
T Consensus        77 ~~~~-~~l~l~al~~~~~~~~~~~~~v~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga  155 (164)
T d2fsja2          77 SKEA-FPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGA  155 (164)
T ss_dssp             STTT-HHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHH
T ss_pred             CHHH-HHHHHHHHHHHhhhcCCCceeEEEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHH
Confidence            4322 223333332222211 12223  45556766555667777776632             2345677778888877


Q ss_pred             hhh
Q 017124          144 LYA  146 (377)
Q Consensus       144 ~~~  146 (377)
                      .+.
T Consensus       156 ~~~  158 (164)
T d2fsja2         156 ALY  158 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=94.98  E-value=0.056  Score=41.47  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             EEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHh
Q 017124          153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEK  217 (377)
Q Consensus       153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~  217 (377)
                      -|+|+|+++|+.+.+-..-.+  ......=.|+.++-.+..-|   +.+     +.+.+|++|+-
T Consensus         7 AIlDlGaGStDAsii~~~g~v--~a~HlAGAG~mVTmlI~seL---Gl~-----d~~lAE~IKky   61 (203)
T d2d0oa3           7 AILDLGAGSTDASIINPKGDI--IATHLAGAGDMVTMIIAREL---GLE-----DRYLAEEIKKY   61 (203)
T ss_dssp             EEEEECSSEEEEEEECTTCCE--EEEEEECSHHHHHHHHHHHH---TCC-----CHHHHHHHHHS
T ss_pred             EEEEcCCCcccHHHhCCCCcE--EEEEecCcchHhHHHHHHhh---CCC-----cHHHHHHHhhc
Confidence            578999999998877433233  22345667899998888777   322     46789999874

>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.93  E-value=0.088  Score=40.44  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             EEEEeCCCCceEEEEee-CCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHh
Q 017124          152 GIVLDSGDGVSHTVPIY-EGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEK  217 (377)
Q Consensus       152 ~lVVDiG~~~t~v~~v~-~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~  217 (377)
                      --|+|+|+++|+.+.+- +|.+.   .....=.|+.++-.+...|   +.+     +.+.+|++|+-
T Consensus         6 laIlDlG~GStDasii~~~g~v~---avhlAGAG~mVTmlI~~eL---Gl~-----d~~lAE~IKky   61 (202)
T d1nbwa3           6 LAILDLGAGSTDAAIVNAEGQIT---AVHLAGAGNMVSLLIKTEL---GLE-----DLSLAEAIKKY   61 (202)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEE---EEEEECCHHHHHHHHHHHH---TCS-----CHHHHHHHHHS
T ss_pred             eEEEEcCCCccchhhccCCCcEE---EEEecCCchhhHHHHHHHh---CCC-----cHHHHHHHhhc
Confidence            35789999999998773 45443   2334567899999888777   322     46789999874

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.091  Score=42.57  Aligned_cols=72  Identities=11%  Similarity=0.044  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017124          275 GIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI  347 (377)
Q Consensus       275 ~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi  347 (377)
                      ++.++|.+.|... -...+..-+++|+++||.+.-..+++++.+.....+.. ..++++-+.+..++.-+||.+
T Consensus       136 S~q~~v~~~l~~~a~~aa~~~~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~-~~i~~~Fp~~~~y~galGA~l  208 (212)
T d2i7na2         136 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSK-GQLKALFLEHEGYFGAVGALL  208 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTT-TSCCEEEETTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHhhCHHHHHHHHHHHHHHHhh-CCceEEecCChhhhHHHHHHH
Confidence            4555555555433 23344556689999999999999999998776544322 145555556667888888655

>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.061  Score=42.17  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      ...||+|+|+++|.++.+.++.+.  .....|+|.-.+++.+
T Consensus         2 gr~Lv~DIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~~   41 (177)
T d1u6za3           2 GRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSFAQLY   41 (177)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHHHHHH
T ss_pred             CCEEEEEeCCChhheEEEECCcEe--EEEEeccceEEeeccc
Confidence            458999999999999999999887  6677899987766655

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.24  E-value=0.055  Score=42.73  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 017124          150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL  191 (377)
Q Consensus       150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l  191 (377)
                      .+++|+|||+++|.++-+.++.+.  .....++|.-.+++.+
T Consensus         3 ~~~lviDIGGGStEli~~~~~~i~--~~~Sl~lG~vrl~e~f   42 (180)
T d1t6ca2           3 GEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIVNLTETF   42 (180)
T ss_dssp             SEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHHHHHHHH
T ss_pred             CCEEEEEeCCChHhhEEeeCCcee--eEEEeecceEEeeccc
Confidence            478999999999999999999888  6678899998777665

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.1  Score=40.06  Aligned_cols=130  Identities=13%  Similarity=0.082  Sum_probs=63.9

Q ss_pred             CEEEeCCCCceEEeeeCCC--CCCCCCCcceeecCCCCc------cccCCCccceeccccccccccceeeceecCCccCC
Q 017124            9 PLVCDNGTGMVKAGFAGDD--APRAVFPSIVGRPRHTGV------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN   80 (377)
Q Consensus         9 ~vviD~Gs~~~k~G~~~~~--~P~~~~p~~~~~~~~~~~------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d   80 (377)
                      .|.||.|..++|+.+...+  .+....|+..........      ....++..+.+|..+......      ...... .
T Consensus         2 ~I~iD~Gy~nvK~a~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~y~v~G~~Y~vG~~~~~~~~t------~~~dy~-~   74 (157)
T d2zgya1           2 LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVT------TNIAWQ-Y   74 (157)
T ss_dssp             EEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBSCCCS------CCSGGG-G
T ss_pred             EEEEecCCCcEEEEEecCCCcEeEEEeccccccccccccCCCceEEEEECCEEEEEcCCccccccc------cccccc-c
Confidence            5889999999998765422  222233443322111100      000123344555543221000      000011 1


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCcEEEEeCCC--C------ChHHHHHHhhhhcc--------ccCCCeEEeeehhhhhh
Q 017124           81 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL--N------PKANREKMTQIMFE--------TFNVPAMYVAIQAVLSL  144 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~--~------~~~~~~~l~~~lfe--------~~~~~~v~~~~~~~~a~  144 (377)
                      .+....++.+.+ ...+.++.+-.+++..|..  .      .+...+...+.++.        .+.+..|.+.|++++|.
T Consensus        75 ~~~~~ali~~aL-~~~~~~~~~v~~~~glp~~~f~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~I~~V~V~Pq~~~A~  153 (157)
T d2zgya1          75 SDVNVVAVHHAL-LTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAG  153 (157)
T ss_dssp             SHHHHHHHHHHH-HHHSCCSCEEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHH
T ss_pred             cHHHHHHHHHHH-HHcCCCCCcEEEEecCCHHHHhhhhhHHHHHHHHhhhcccceeeecCCeEEEEEEEEEEEeCcHHhh
Confidence            233445566665 4455555555677777752  1      12222322333332        35668999999999998


Q ss_pred             hh
Q 017124          145 YA  146 (377)
Q Consensus       145 ~~  146 (377)
                      |.
T Consensus       154 ~~  155 (157)
T d2zgya1         154 YE  155 (157)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=89.88  E-value=1.2  Score=31.43  Aligned_cols=63  Identities=8%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhcccccCCCCCCc---EEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhc
Q 017124           81 WDDMEKIWHHTFYNELRVAPEEHP---VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS  147 (377)
Q Consensus        81 ~~~~~~~~~~~~~~~L~~~~~~~~---vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~  147 (377)
                      |+.+.+.++.++ +.-+....+..   +.+..+.......+..+.+.+   ..+..+.+.++..+|+++.
T Consensus        46 ~~~i~~~i~~~~-~~ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~---~~~~~v~v~nDa~~A~~ga  111 (114)
T d1zc6a1          46 WQAVLSTLEAAF-QQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA---PGFARLSLATDGYTTLLGA  111 (114)
T ss_dssp             HHHHHHHHHHHH-HHTTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC---CCCSEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHcCCChhhhceeEEEEEecCCCcHHHHHHHHHhC---CCCCeEEEECHHHHHHHHh
Confidence            345555566665 44455554433   445666666666666666554   2446899999999998863

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=88.20  E-value=0.17  Score=35.92  Aligned_cols=24  Identities=8%  Similarity=-0.047  Sum_probs=20.2

Q ss_pred             hhccccCCCeEEeeehhhhhhhhc
Q 017124          124 IMFETFNVPAMYVAIQAVLSLYAS  147 (377)
Q Consensus       124 ~lfe~~~~~~v~~~~~~~~a~~~~  147 (377)
                      .+.+.++.+.|.+.++.-|++|+.
T Consensus        84 ~l~~~~~~~~v~v~NDa~AaA~gi  107 (110)
T d1q18a1          84 EMKKNLGFSHLEIINDFTAVSMAI  107 (110)
T ss_dssp             HHHHHTTCSEEEEEEHHHHHHHHG
T ss_pred             HHHHHhCCCcEEEEehHHHHhccc
Confidence            344678899999999999999975

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.79  Score=32.68  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=17.6

Q ss_pred             CCCEEEeCCCCceEEeeeCCC
Q 017124            7 IQPLVCDNGTGMVKAGFAGDD   27 (377)
Q Consensus         7 ~~~vviD~Gs~~~k~G~~~~~   27 (377)
                      |..+.||+|.++++++....+
T Consensus         1 M~~lgiDiGgT~i~~~l~d~~   21 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGAD   21 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECTT
T ss_pred             CeEEEEEeCcCEEEEEEEcCC
Confidence            357999999999999988644

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=0.29  Score=37.62  Aligned_cols=52  Identities=15%  Similarity=0.284  Sum_probs=38.4

Q ss_pred             CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      .|||.||.+..+.+.+++++.+.+.. ....+++......+.+.-.||+++|.
T Consensus       117 ~IvlgG~i~~~~~~~~~i~~~~~~~~-~~~~~~I~~s~l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2         117 CVVVGGSVGLAEGYLALVETYLAQEP-AAFHVDLLAAHYRHDAGLLGAALLAQ  168 (170)
T ss_dssp             EEEEEHHHHTSTTHHHHHHHHHTTSC-GGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred             EEEEeChhhhhhhHHHHHHHHHHhcc-CCCCCeEEecCCCCcHHHHHHHHHHC
Confidence            68888888888889888888876542 22345666665566788899999883

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.33  E-value=0.35  Score=37.12  Aligned_cols=68  Identities=12%  Similarity=0.072  Sum_probs=43.9

Q ss_pred             hHHHHHHHHhcCChhHHHHhhcCceeccCCcC-CcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017124          276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTM-FPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS  350 (377)
Q Consensus       276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~-i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~  350 (377)
                      |...|...+.-++++       .|||.|+.+. .+-|.+++++.++........+++..+.....+.-.||+.++-
T Consensus        91 la~~l~n~~~~~dPe-------~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~~  159 (169)
T d2hoea2          91 FSIGLLNLIHLFGIS-------KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL  159 (169)
T ss_dssp             HHHHHHHHHHHHCCC-------EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-------EEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHHHHHHH
Confidence            444444444444443       5888888875 3557788888887665443345565555556778899988764

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=80.67  E-value=1.8  Score=31.05  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=17.6

Q ss_pred             CCCCEEEeCCCCceEEeeeCC
Q 017124            6 DIQPLVCDNGTGMVKAGFAGD   26 (377)
Q Consensus         6 ~~~~vviD~Gs~~~k~G~~~~   26 (377)
                      +.+.|.||+|.+++++|+...
T Consensus         1 ~~~vlGiDiGgT~i~~~l~d~   21 (129)
T d1woqa1           1 NAPLIGIDIGGTGIKGGIVDL   21 (129)
T ss_dssp             CCCEEEEEECSSEEEEEEEET
T ss_pred             CCCEEEEEECcceEEEEEEEC
Confidence            356899999999999998753