Citrus Sinensis ID: 017174

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
ccccccccccEEEEccccccccccccccccEEEEEccccccccccccHHHHHHHHccccccHHcHHHHHHHHcccccccccccccccEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHcccEEEEcccccccccccccHHHHHHccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEccHHHHHHccccccccccccEEcccHHHHHHHHccccccccccccHHHHHHHHHHHHccEEEEEcccccEEEccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccc
cEEEEccccccccccHEEEccEEEEEEEcccccccccHHHHccEEEEccccccHHHcccccHHHHHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHccccEEEEccHHHHHHHHHcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEHHHHHHHHHccHHHcccccEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEcccEEEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcc
mlirygvstgfaslgsvkncmlasSAVFRRQQFLIRSlggysdhieprrmqdirsmsgttfeadAENVMreitpvldpskhkgqagkIAVIGgcreytgapyFAAISALKIGAdlshvfctkdaapviksyspelivhpileesynisgledeeRRCISSKILAEVDKWMERFDClvvgpglgrdpyLLECVSEIMKHarqsnvpividgdglFLVTNSidlvsgyplavltpnvNEYKRLVQKVLncevndrdAPELLQSLAKQIGgvtilqkgksdlisdgeiaksvsiygsprrcggqgdilsGSVAVFLSWARakgkattsqmnptvLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRsledicpac
mlirygvstgfaslgsvKNCMLASSAVFRRQQFLIRSlggysdhieprrmqdirSMSGTTFEADAENVMREItpvldpskhkgqaGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESynisgledeERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQkgksdlisdgeiAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGkattsqmnptVLGCIAGSALLRKAASlafkdkkrstltTDIIeclgrsledicpac
MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
**IRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDH****************************************AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDI****
**IRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWAR********QMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
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MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPAC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
F6HDM2354 ATP-dependent (S)-NAD(P)H yes no 0.928 0.985 0.788 1e-158
Q94AF2365 ATP-dependent (S)-NAD(P)H yes no 0.965 0.994 0.718 1e-149
C5Y210381 ATP-dependent (S)-NAD(P)H N/A no 0.904 0.892 0.639 1e-129
A9RY03342 ATP-dependent (S)-NAD(P)H N/A no 0.800 0.880 0.606 1e-109
E2QUI9347 ATP-dependent (S)-NAD(P)H yes no 0.779 0.844 0.461 4e-76
E1BNQ4329 ATP-dependent (S)-NAD(P)H yes no 0.779 0.890 0.462 6e-75
D4AAT7343 ATP-dependent (S)-NAD(P)H yes no 0.832 0.912 0.449 2e-74
Q9CZ42343 ATP-dependent (S)-NAD(P)H yes no 0.797 0.874 0.454 3e-74
Q5R824329 ATP-dependent (S)-NAD(P)H yes no 0.805 0.920 0.443 6e-74
Q8IW45347 ATP-dependent (S)-NAD(P)H yes no 0.805 0.873 0.446 6e-74
>sp|F6HDM2|NNRD_VITVI ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Vitis vinifera GN=VIT_05s0020g02800 PE=3 SV=1 Back     alignment and function desciption
 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/359 (78%), Positives = 309/359 (86%), Gaps = 10/359 (2%)

Query: 21  MLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSK 80
           MLASSAVFRRQ+FLIR LG      +  R    R+M+    EADAEN++R ITP LD ++
Sbjct: 1   MLASSAVFRRQEFLIRCLGVGGQSQQFYRKSIPRTMA---LEADAENILRAITPTLDLAR 57

Query: 81  HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPI 140
           HKGQAGKIAVIGGCREYTGAPYF+AISALKIGADLSHVFCTKDAAPVIKSYSPELIVHP+
Sbjct: 58  HKGQAGKIAVIGGCREYTGAPYFSAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPL 117

Query: 141 LEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHAR 200
           LEESY++    +E+++ IS K+L EV KWMERFDCLVVGPGLGRDP+LL CVSEIMKHAR
Sbjct: 118 LEESYSV---REEDKKAISEKVLTEVVKWMERFDCLVVGPGLGRDPFLLGCVSEIMKHAR 174

Query: 201 QSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQ 260
           QSNVPIVIDGDGLFLVTNS+DLVSGYPLAVLTPNVNEYKRLVQKVLNCEV D+DA E L 
Sbjct: 175 QSNVPIVIDGDGLFLVTNSLDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVGDQDAAEQLL 234

Query: 261 SLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDILSGSVAVFLSWAR--- 317
           SLAK IGGVTIL+KGKSDLISDGE   SV IYGSPRRCGGQGDILSGSVAVFLSWAR   
Sbjct: 235 SLAKGIGGVTILRKGKSDLISDGETVNSVGIYGSPRRCGGQGDILSGSVAVFLSWARQRI 294

Query: 318 -AKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDICPA 375
            A+G    S  +PTVLG IAGSAL+RKAASLAF++KKRSTLT DIIECLGRSLEDICPA
Sbjct: 295 IAEGDLNISPKSPTVLGSIAGSALMRKAASLAFENKKRSTLTGDIIECLGRSLEDICPA 353
Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 3
>sp|Q94AF2|NNRD_ARATH ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Arabidopsis thaliana GN=At5g19150 PE=2 SV=1 Back     alignment and function description
>sp|C5Y210|NNRD_SORBI ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Sorghum bicolor GN=Sb05g010020 PE=3 SV=1 Back     alignment and function description
>sp|A9RY03|NNRD_PHYPA ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_121160 PE=3 SV=1 Back     alignment and function description
>sp|E2QUI9|NNRD_CANFA ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Canis familiaris GN=CARKD PE=3 SV=1 Back     alignment and function description
>sp|E1BNQ4|NNRD_BOVIN ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Bos taurus GN=CARKD PE=3 SV=1 Back     alignment and function description
>sp|D4AAT7|NNRD_RAT ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Rattus norvegicus GN=Carkd PE=2 SV=1 Back     alignment and function description
>sp|Q9CZ42|NNRD_MOUSE ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Mus musculus GN=Carkd PE=1 SV=1 Back     alignment and function description
>sp|Q5R824|NNRD_PONAB ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Pongo abelii GN=CARKD PE=2 SV=1 Back     alignment and function description
>sp|Q8IW45|NNRD_HUMAN ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Homo sapiens GN=CARKD PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
255552273380 conserved hypothetical protein [Ricinus 0.989 0.978 0.755 1e-161
225432552370 PREDICTED: carbohydrate kinase domain-co 0.970 0.986 0.767 1e-158
118486383370 unknown [Populus trichocarpa] 0.968 0.983 0.748 1e-158
224102613368 predicted protein [Populus trichocarpa] 0.962 0.983 0.743 1e-157
356521957367 PREDICTED: carbohydrate kinase domain-co 0.933 0.956 0.752 1e-157
380877011354 RecName: Full=ATP-dependent (S)-NAD(P)H- 0.928 0.985 0.788 1e-157
363807480368 uncharacterized protein LOC100808704 [Gl 0.938 0.959 0.760 1e-155
297812101370 carbohydrate kinase family [Arabidopsis 0.978 0.994 0.726 1e-152
18419840365 pfkB-like carbohydrate kinase family pro 0.965 0.994 0.718 1e-148
449432726323 PREDICTED: ATP-dependent (S)-NAD(P)H-hyd 0.843 0.981 0.763 1e-143
>gi|255552273|ref|XP_002517181.1| conserved hypothetical protein [Ricinus communis] gi|223543816|gb|EEF45344.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/384 (75%), Positives = 329/384 (85%), Gaps = 12/384 (3%)

Query: 1   MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLG--GYSDHIEPRRMQDIRSMSG 58
           MLIR+G+S    SL S   C L S AV+RRQQFLIR +G  GYS +     MQ+  S+SG
Sbjct: 1   MLIRHGMSQ-LMSLNSRSTCPLTSLAVWRRQQFLIRCIGVGGYSSYSIENIMQETHSLSG 59

Query: 59  TT-FEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSH 117
           T   EADAE+++R ITPVLD +KHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSH
Sbjct: 60  TNNVEADAEDILRAITPVLDQTKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSH 119

Query: 118 VFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLV 177
           VFCTKDAAPVIKSYSPELIVHPILEESY+I    D + + IS K++AEVDKWM+RFDCLV
Sbjct: 120 VFCTKDAAPVIKSYSPELIVHPILEESYSIG---DGDMKYISGKVVAEVDKWMQRFDCLV 176

Query: 178 VGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237
           VGPGLGRDP+LL+CVS+I+K AR+SNVPIV+DGDGLFLVTNS+DLVSGYPLAVLTPN+NE
Sbjct: 177 VGPGLGRDPFLLDCVSKIIKQARRSNVPIVVDGDGLFLVTNSLDLVSGYPLAVLTPNINE 236

Query: 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR 297
           YKRL+QKV+NCEVND++A   L SLAK+IGGVTIL+KGKSDLISDGE  KSV ++GSPRR
Sbjct: 237 YKRLIQKVMNCEVNDQEAHGQLLSLAKRIGGVTILRKGKSDLISDGETVKSVGVFGSPRR 296

Query: 298 CGGQGDILSGSVAVFLSWAR-----AKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK 352
           CGGQGDILSGSVAVFLSWAR     A+G  + S  NPTVLGCIAGSALLRKAASLAF+++
Sbjct: 297 CGGQGDILSGSVAVFLSWARQHVLAAEGNLSMSPTNPTVLGCIAGSALLRKAASLAFENR 356

Query: 353 KRSTLTTDIIECLGRSLEDICPAC 376
           KRSTLT DII+CLG SLEDICPAC
Sbjct: 357 KRSTLTGDIIDCLGSSLEDICPAC 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432552|ref|XP_002280838.1| PREDICTED: carbohydrate kinase domain-containing protein [Vitis vinifera] gi|297736994|emb|CBI26195.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118486383|gb|ABK95032.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102613|ref|XP_002312747.1| predicted protein [Populus trichocarpa] gi|222852567|gb|EEE90114.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521957|ref|XP_003529616.1| PREDICTED: carbohydrate kinase domain-containing protein-like [Glycine max] Back     alignment and taxonomy information
>gi|380877011|sp|F6HDM2.1|NNRD_VITVI RecName: Full=ATP-dependent (S)-NAD(P)H-hydrate dehydratase; AltName: Full=ATP-dependent NAD(P)HX dehydratase Back     alignment and taxonomy information
>gi|363807480|ref|NP_001241885.1| uncharacterized protein LOC100808704 [Glycine max] gi|255641847|gb|ACU21192.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297812101|ref|XP_002873934.1| carbohydrate kinase family [Arabidopsis lyrata subsp. lyrata] gi|297319771|gb|EFH50193.1| carbohydrate kinase family [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18419840|ref|NP_568369.1| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gi|42573429|ref|NP_974811.1| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gi|75164964|sp|Q94AF2.1|NNRD_ARATH RecName: Full=ATP-dependent (S)-NAD(P)H-hydrate dehydratase; AltName: Full=ATP-dependent NAD(P)HX dehydratase gi|15081666|gb|AAK82488.1| AT5g19150/T24G5_50 [Arabidopsis thaliana] gi|20856361|gb|AAM26662.1| AT5g19150/T24G5_50 [Arabidopsis thaliana] gi|332005277|gb|AED92660.1| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gi|332005278|gb|AED92661.1| pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449432726|ref|XP_004134150.1| PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase-like [Cucumis sativus] gi|449515380|ref|XP_004164727.1| PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2182147365 AT5G19150 "AT5G19150" [Arabido 0.965 0.994 0.723 1.2e-136
UNIPROTKB|I3LS60347 CARKD "ATP-dependent (S)-NAD(P 0.763 0.827 0.5 3e-69
UNIPROTKB|E1BNQ4329 CARKD "ATP-dependent (S)-NAD(P 0.763 0.872 0.470 2.7e-68
UNIPROTKB|E2QUI9347 CARKD "ATP-dependent (S)-NAD(P 0.763 0.827 0.473 3.5e-68
UNIPROTKB|F1P2P4322 CARKD "Uncharacterized protein 0.779 0.909 0.455 4.4e-68
RGD|1562691343 Carkd "carbohydrate kinase dom 0.805 0.883 0.456 5.1e-67
UNIPROTKB|D4AAT7343 Carkd "ATP-dependent (S)-NAD(P 0.805 0.883 0.456 5.1e-67
MGI|MGI:1913353343 Carkd "carbohydrate kinase dom 0.789 0.865 0.459 6.5e-67
UNIPROTKB|Q8IW45347 CARKD "ATP-dependent (S)-NAD(P 0.779 0.844 0.461 2.8e-66
ZFIN|ZDB-GENE-080204-1625 zgc:171429 "zgc:171429" [Danio 0.781 0.470 0.443 9.4e-66
TAIR|locus:2182147 AT5G19150 "AT5G19150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 272/376 (72%), Positives = 311/376 (82%)

Query:     1 MLIRYGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTT 60
             ML++  + +G   L S  +   +SS+V RRQ+FL+R+L G      P     IR+MS T+
Sbjct:     1 MLVKPSIISGLVRLTS--HSPSSSSSVLRRQEFLVRTLCG-----SPI----IRAMSSTS 49

Query:    61 FEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120
              EADAE+V+R +TP LD  +HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC
Sbjct:    50 -EADAESVLRTVTPSLDLKRHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 108

Query:   121 TKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGP 180
             TKDAAPVIKSYSPELIVHP+LEESY+IS L +E++R +  K+L EV KWMERFDCLV+GP
Sbjct:   109 TKDAAPVIKSYSPELIVHPVLEESYSISQLSEEDKREVQDKVLGEVGKWMERFDCLVIGP 168

Query:   181 GLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240
             GLGRDP+LLECVS IM  A++SNVP VIDGDGLFLVTNSIDLV  YPLAVLTPNVNEYKR
Sbjct:   169 GLGRDPFLLECVSIIMLLAKKSNVPFVIDGDGLFLVTNSIDLVHSYPLAVLTPNVNEYKR 228

Query:   241 LVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGG 300
             LVQKVLNCEV++++A + L+SLAKQIGGVTIL+KGKSDLIS+GE  KSVSIYGSPRRCGG
Sbjct:   229 LVQKVLNCEVDEQNAEDQLRSLAKQIGGVTILRKGKSDLISNGETVKSVSIYGSPRRCGG 288

Query:   301 QGDILSGSVAVFLSWARA-KGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTT 359
             QGDILSG VAVFLSWA+  K    +   NP +LGCIA S LLRKAASLAF   KRSTLT+
Sbjct:   289 QGDILSGGVAVFLSWAQQLKSDPESPSENPAILGCIAASGLLRKAASLAFTKHKRSTLTS 348

Query:   360 DIIECLGRSLEDICPA 375
             DIIECLG SLEDICPA
Sbjct:   349 DIIECLGESLEDICPA 364
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0048573 "photoperiodism, flowering" evidence=RCA
UNIPROTKB|I3LS60 CARKD "ATP-dependent (S)-NAD(P)H-hydrate dehydratase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNQ4 CARKD "ATP-dependent (S)-NAD(P)H-hydrate dehydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUI9 CARKD "ATP-dependent (S)-NAD(P)H-hydrate dehydratase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2P4 CARKD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1562691 Carkd "carbohydrate kinase domain containing" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4AAT7 Carkd "ATP-dependent (S)-NAD(P)H-hydrate dehydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913353 Carkd "carbohydrate kinase domain containing" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IW45 CARKD "ATP-dependent (S)-NAD(P)H-hydrate dehydratase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-1 zgc:171429 "zgc:171429" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A9RY03NNRD_PHYPA4, ., 2, ., 1, ., 9, 30.60620.80050.8801N/Ano
Q8IW45NNRD_HUMAN4, ., 2, ., 1, ., 9, 30.44610.80580.8731yesno
D4AAT7NNRD_RAT4, ., 2, ., 1, ., 9, 30.44910.83240.9125yesno
F6HDM2NNRD_VITVI4, ., 2, ., 1, ., 9, 30.78830.92810.9858yesno
Q5R824NNRD_PONAB4, ., 2, ., 1, ., 9, 30.44300.80580.9209yesno
Q94AF2NNRD_ARATH4, ., 2, ., 1, ., 9, 30.71800.96540.9945yesno
C5Y210NNRD_SORBI4, ., 2, ., 1, ., 9, 30.63970.90420.8923N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
cd01171254 cd01171, YXKO-related, B 3e-82
COG0063284 COG0063, COG0063, Predicted sugar kinase [Carbohyd 2e-60
pfam01256242 pfam01256, Carb_kinase, Carbohydrate kinase 1e-48
TIGR00196271 TIGR00196, yjeF_cterm, yjeF C-terminal region, hyd 1e-43
PRK10565508 PRK10565, PRK10565, putative carbohydrate kinase; 2e-21
COG2145265 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar 5e-06
cd01170242 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylt 9e-05
PRK09355263 PRK09355, PRK09355, hydroxyethylthiazole kinase; V 7e-04
>gnl|CDD|238576 cd01171, YXKO-related, B Back     alignment and domain information 
 Score =  251 bits (643), Expect = 3e-82
 Identities = 99/287 (34%), Positives = 141/287 (49%), Gaps = 37/287 (12%)

Query: 78  PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIV 137
           P  HKG  G++ VIGG R YTGA Y AA++AL+ GA L  V    +AA VIKSYSPEL+V
Sbjct: 1   PDSHKGSRGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMV 60

Query: 138 HPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMK 197
           HP+LE                      E+ + +ER D +V+GPGLGRD    E  +EI++
Sbjct: 61  HPLLETDIE------------------ELLELLERADAVVIGPGLGRD----EEAAEILE 98

Query: 198 HARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPE 257
            A   + P+V+D D L L+ +   L+  Y   VLTP+  E+ RL+  ++     DR A  
Sbjct: 99  KALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQADRLA-- 156

Query: 258 LLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWA 316
                A    G T++ KG   +I+D +    V+  G+P    GG GD+L+G +A  L+  
Sbjct: 157 -AAREAAAKLGATVVLKGAVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQG 215

Query: 317 RAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIE 363
            +  +A                 L   A  LA K K       D++ 
Sbjct: 216 LSPLEA-----------AALAVYLHGLAGDLAAKKKGAGLTAADLVA 251

subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily. Length = 254
>gnl|CDD|223141 COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|189911 pfam01256, Carb_kinase, Carbohydrate kinase Back     alignment and domain information
>gnl|CDD|232868 TIGR00196, yjeF_cterm, yjeF C-terminal region, hydroxyethylthiazole kinase-related Back     alignment and domain information
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional Back     alignment and domain information
>gnl|CDD|225056 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz Back     alignment and domain information
>gnl|CDD|236477 PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
COG0063284 Predicted sugar kinase [Carbohydrate transport and 100.0
KOG3974306 consensus Predicted sugar kinase [Carbohydrate tra 100.0
PRK10565508 putative carbohydrate kinase; Provisional 100.0
PF01256242 Carb_kinase: Carbohydrate kinase; InterPro: IPR000 100.0
TIGR00196272 yjeF_cterm yjeF C-terminal region, hydroxyethylthi 100.0
cd01171254 YXKO-related B.subtilis YXKO protein of unknown fu 100.0
TIGR00694249 thiM hydroxyethylthiazole kinase. This model repre 99.96
COG0351263 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi 99.95
PRK09355263 hydroxyethylthiazole kinase; Validated 99.95
COG2145265 ThiM Hydroxyethylthiazole kinase, sugar kinase fam 99.94
PF02110246 HK: Hydroxyethylthiazole kinase family; InterPro: 99.94
PTZ00493321 phosphomethylpyrimidine kinase; Provisional 99.93
cd01170242 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T 99.93
TIGR00097254 HMP-P_kinase phosphomethylpyrimidine kinase. This 99.91
PRK12616270 pyridoxal kinase; Reviewed 99.89
PRK06427266 bifunctional hydroxy-methylpyrimidine kinase/ hydr 99.88
cd01169242 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim 99.88
PRK12412268 pyridoxal kinase; Reviewed 99.88
PLN02898 502 HMP-P kinase/thiamin-monophosphate pyrophosphoryla 99.87
KOG2598 523 consensus Phosphomethylpyrimidine kinase [Coenzyme 99.87
PRK08573 448 phosphomethylpyrimidine kinase; Provisional 99.87
PRK09517 755 multifunctional thiamine-phosphate pyrophosphoryla 99.86
PTZ00347504 phosphomethylpyrimidine kinase; Provisional 99.84
PRK14713 530 multifunctional hydroxymethylpyrimidine phosphokin 99.84
PF08543246 Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte 99.84
PRK12413253 phosphomethylpyrimidine kinase; Provisional 99.83
cd01173254 pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla 99.8
PRK07105284 pyridoxamine kinase; Validated 99.78
COG1105310 FruK Fructose-1-phosphate kinase and related fruct 99.69
PRK05756286 pyridoxamine kinase; Validated 99.66
PTZ00344296 pyridoxal kinase; Provisional 99.56
PRK08176281 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy 99.5
PLN02978308 pyridoxal kinase 99.33
TIGR00687286 pyridox_kin pyridoxal kinase. ThiD and related pro 99.29
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.16
TIGR02198315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 99.09
cd00287196 ribokinase_pfkB_like ribokinase/pfkB superfamily: 99.07
PRK10294309 6-phosphofructokinase 2; Provisional 99.06
cd01174292 ribokinase Ribokinase catalyses the phosphorylatio 99.02
cd01164289 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 99.01
TIGR03168303 1-PFK hexose kinase, 1-phosphofructokinase family. 99.01
PRK11316 473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.0
cd01166294 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho 98.99
cd01172304 RfaE_like RfaE encodes a bifunctional ADP-heptose 98.99
PRK11142306 ribokinase; Provisional 98.98
PRK09513312 fruK 1-phosphofructokinase; Provisional 98.96
COG2240281 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe 98.95
TIGR03828304 pfkB 1-phosphofructokinase. This enzyme acts in co 98.94
PRK13508309 tagatose-6-phosphate kinase; Provisional 98.94
TIGR01231309 lacC tagatose-6-phosphate kinase. This enzyme is p 98.93
PRK09850313 pseudouridine kinase; Provisional 98.9
TIGR02152293 D_ribokin_bact ribokinase. This model describes ri 98.87
PLN02379367 pfkB-type carbohydrate kinase family protein 98.8
PTZ00292326 ribokinase; Provisional 98.79
cd01941288 YeiC_kinase_like YeiC-like sugar kinase. Found in 98.78
PRK09954362 putative kinase; Provisional 98.75
cd01167295 bac_FRK Fructokinases (FRKs) mainly from bacteria 98.75
PLN02341470 pfkB-type carbohydrate kinase family protein 98.75
cd01168312 adenosine_kinase Adenosine kinase (AK) catalyzes t 98.75
PLN02813426 pfkB-type carbohydrate kinase family protein 98.71
KOG2599308 consensus Pyridoxal/pyridoxine/pyridoxamine kinase 98.67
PTZ00247345 adenosine kinase; Provisional 98.64
cd01945284 ribokinase_group_B Ribokinase-like subgroup B. Fou 98.6
cd01946277 ribokinase_group_C Ribokinase-like subgroup C. Fou 98.58
cd01944289 YegV_kinase_like YegV-like sugar kinase. Found onl 98.56
PLN02323330 probable fructokinase 98.55
PRK09434304 aminoimidazole riboside kinase; Provisional 98.55
PF00294301 PfkB: pfkB family carbohydrate kinase; InterPro: I 98.46
PLN02548332 adenosine kinase 98.33
cd01942279 ribokinase_group_A Ribokinase-like subgroup A. Fou 98.26
cd01940264 Fructoselysine_kinase_like Fructoselysine kinase-l 98.25
PRK15074434 inosine/guanosine kinase; Provisional 98.2
PLN02630335 pfkB-type carbohydrate kinase family protein 98.15
cd01937254 ribokinase_group_D Ribokinase-like subgroup D. Fou 98.11
COG0524311 RbsK Sugar kinases, ribokinase family [Carbohydrat 98.08
cd01947265 Guanosine_kinase_like Guanosine kinase-like sugar 98.05
cd01943328 MAK32 MAK32 kinase. MAK32 is a protein found prima 98.02
PLN02543496 pfkB-type carbohydrate kinase family protein 97.67
PLN02967581 kinase 97.62
PRK09813260 fructoselysine 6-kinase; Provisional 97.33
cd01939290 Ketohexokinase Ketohexokinase (fructokinase, KHK) 97.11
KOG2854343 consensus Possible pfkB family carbohydrate kinase 96.14
KOG2855330 consensus Ribokinase [Carbohydrate transport and m 94.05
KOG3009614 consensus Predicted carbohydrate kinase, contains 93.19
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-52  Score=398.98  Aligned_cols=274  Identities=35%  Similarity=0.552  Sum_probs=228.6

Q ss_pred             cCChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeeccc
Q 017174           62 EADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPIL  141 (376)
Q Consensus        62 ~~~~~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~  141 (376)
                      ...+.+ +...+|+|++++|||++|+|+|||||..|+||+++|+++|+|+|+|+|+++++.++...+.++.||+|++++.
T Consensus        10 ~~~~~~-~~~~~~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~   88 (284)
T COG0063          10 LVGPAD-LIAWLPPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIEVE   88 (284)
T ss_pred             cCCHHH-hhccCCCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEeecc
Confidence            344444 3445889999999999999999999999999999999999999999999999999888899999999999875


Q ss_pred             ccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchh
Q 017174          142 EESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID  221 (376)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~  221 (376)
                      +..                  ......+.+++|+|++|||+|.+++..+.+.++++...   +|+|||||+++++...++
T Consensus        89 ~~~------------------~~~~~~~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL~~la~~~~  147 (284)
T COG0063          89 GKK------------------LLEERELVERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADALNLLAELPD  147 (284)
T ss_pred             cch------------------hhHHhhhhccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHHHHHHhCcc
Confidence            431                  01111345789999999999999988888888876432   899999999997775544


Q ss_pred             hhccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCCC-CCC
Q 017174          222 LVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR-CGG  300 (376)
Q Consensus       222 ll~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~~-t~G  300 (376)
                      .+. ....|||||++||+||++.+..  ..+.|+++.+++++++++ ++||+||..|+|++++...++|..|++.+ ++|
T Consensus       148 ~~~-~~~~VlTPH~gEf~rL~g~~~~--~~~~~r~~~a~~~a~~~~-~vvVLKG~~tvI~~~~g~~~~n~~G~~~ma~GG  223 (284)
T COG0063         148 LLD-ERKVVLTPHPGEFARLLGTEVD--EIEVDRLEAARELAAKYG-AVVVLKGAVTVIADPDGEVFVNPTGNPGMATGG  223 (284)
T ss_pred             ccc-CCcEEECCCHHHHHHhcCCccc--ccccchHHHHHHHHHHcC-CEEEEeCCCCEEEcCCCcEEEcCCCCHHhccCc
Confidence            332 1238999999999999985431  123588999999999998 57889999999999875566888999985 999


Q ss_pred             chHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhh
Q 017174          301 QGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDI  372 (376)
Q Consensus       301 sGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~~~~~~l  372 (376)
                      |||+|+|+|++|||   |+  +.    ++ ++||+.|+|+|+.||++++++.+ +++++|+++.||++++.+
T Consensus       224 tGDvLaGii~alLA---q~--~~----~~-~~Aa~~g~~~h~~ag~la~~~~g-~~~a~Dl~~~ip~~~~~~  284 (284)
T COG0063         224 TGDVLAGIIGALLA---QG--PA----DP-LEAAAAGAWLHGRAGELAAKKHG-GLTATDLIEAIPRALKRL  284 (284)
T ss_pred             chHHHHHHHHHHHh---CC--CC----CH-HHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcC
Confidence            99999999999999   77  21    23 58899999999999999998888 999999999999999753

>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase Back     alignment and domain information
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related Back     alignment and domain information
>cd01171 YXKO-related B Back     alignment and domain information
>TIGR00694 thiM hydroxyethylthiazole kinase Back     alignment and domain information
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>PRK09355 hydroxyethylthiazole kinase; Validated Back     alignment and domain information
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism] Back     alignment and domain information
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium [] Back     alignment and domain information
>PTZ00493 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz Back     alignment and domain information
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase Back     alignment and domain information
>PRK12616 pyridoxal kinase; Reviewed Back     alignment and domain information
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>PRK12412 pyridoxal kinase; Reviewed Back     alignment and domain information
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase Back     alignment and domain information
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription] Back     alignment and domain information
>PRK08573 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PTZ00347 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional Back     alignment and domain information
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2 Back     alignment and domain information
>PRK12413 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>PRK07105 pyridoxamine kinase; Validated Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05756 pyridoxamine kinase; Validated Back     alignment and domain information
>PTZ00344 pyridoxal kinase; Provisional Back     alignment and domain information
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PLN02978 pyridoxal kinase Back     alignment and domain information
>TIGR00687 pyridox_kin pyridoxal kinase Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>PRK10294 6-phosphofructokinase 2; Provisional Back     alignment and domain information
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>PRK11142 ribokinase; Provisional Back     alignment and domain information
>PRK09513 fruK 1-phosphofructokinase; Provisional Back     alignment and domain information
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03828 pfkB 1-phosphofructokinase Back     alignment and domain information
>PRK13508 tagatose-6-phosphate kinase; Provisional Back     alignment and domain information
>TIGR01231 lacC tagatose-6-phosphate kinase Back     alignment and domain information
>PRK09850 pseudouridine kinase; Provisional Back     alignment and domain information
>TIGR02152 D_ribokin_bact ribokinase Back     alignment and domain information
>PLN02379 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PTZ00292 ribokinase; Provisional Back     alignment and domain information
>cd01941 YeiC_kinase_like YeiC-like sugar kinase Back     alignment and domain information
>PRK09954 putative kinase; Provisional Back     alignment and domain information
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>PLN02341 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>PLN02813 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism] Back     alignment and domain information
>PTZ00247 adenosine kinase; Provisional Back     alignment and domain information
>cd01945 ribokinase_group_B Ribokinase-like subgroup B Back     alignment and domain information
>cd01946 ribokinase_group_C Ribokinase-like subgroup C Back     alignment and domain information
>cd01944 YegV_kinase_like YegV-like sugar kinase Back     alignment and domain information
>PLN02323 probable fructokinase Back     alignment and domain information
>PRK09434 aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases Back     alignment and domain information
>PLN02548 adenosine kinase Back     alignment and domain information
>cd01942 ribokinase_group_A Ribokinase-like subgroup A Back     alignment and domain information
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like Back     alignment and domain information
>PRK15074 inosine/guanosine kinase; Provisional Back     alignment and domain information
>PLN02630 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01937 ribokinase_group_D Ribokinase-like subgroup D Back     alignment and domain information
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases Back     alignment and domain information
>cd01943 MAK32 MAK32 kinase Back     alignment and domain information
>PLN02543 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PLN02967 kinase Back     alignment and domain information
>PRK09813 fructoselysine 6-kinase; Provisional Back     alignment and domain information
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose Back     alignment and domain information
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3rs8_A502 Crystal Structure Of Tm0922, A Fusion Of A Domain O 5e-21
2ax3_A502 Crystal Structure Of A Putative Carbohydrate Kinase 1e-20
3bgk_A311 The Crystal Structure Of Hypothetic Protein Smu.573 5e-11
2r3b_A310 Crystal Structure Of A Ribokinase-Like Superfamily 1e-06
3rph_A279 Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydra 6e-04
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate Dehydratase From Thermotoga Maritima In Complex With Adp-Ribose Length = 502 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 25/262 (9%)
Query: 68  VMREITPVLDPSK----HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123
           + RE+   L P +    HKG  GK+ +I G R Y+GAP  + + +LK+G  L  +     
Sbjct: 223 ITREMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFP 282
Query: 124 AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLG 183
              +  S  PELI  PI           D E+   S + L E  +  +  D + +GPGLG
Sbjct: 283 QNLIATSRFPELISVPI-----------DTEKGFFSLQNLQECLELSKDVDVVAIGPGLG 331
Query: 184 RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQ 243
            + ++ E V+E +K   +   P VID D + ++  S+      P AVLTP+  E  RLV+
Sbjct: 332 NNEHVREFVNEFLKTLEK---PAVIDADAINVLDTSVLKERKSP-AVLTPHPGEMARLVK 387
Query: 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRC-GGQG 302
           K +    + +   EL +  AK+   V +L K  + +++DGE     +I G+     GG G
Sbjct: 388 KTVG---DVKYNYELAEEFAKENDCVLVL-KSATTIVTDGE-KTLFNITGNTGLSKGGSG 442
Query: 303 DILSGSVAVFLSWARAKGKATT 324
           D+L+G +A F++   +  +A+T
Sbjct: 443 DVLTGMIAGFIAQGLSPLEAST 464
>pdb|2AX3|A Chain A, Crystal Structure Of A Putative Carbohydrate Kinase (Tm0922) From Thermotoga Maritima Msb8 At 2.25 A Resolution Length = 502 Back     alignment and structure
>pdb|3BGK|A Chain A, The Crystal Structure Of Hypothetic Protein Smu.573 From Streptococcus Mutans Length = 311 Back     alignment and structure
>pdb|2R3B|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein (Ef1790) From Enterococcus Faecalis V583 At 1.80 A Resolution Length = 310 Back     alignment and structure
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate Dehydratase From Bacillus Subtilis Co-Crystallized With AtpMG2+. Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3rss_A502 Putative uncharacterized protein; unknown function 1e-48
2r3b_A310 YJEF-related protein; putative kinase in the ribok 6e-43
3bgk_A311 SMU.573, putative uncharacterized protein; alpha/b 1e-42
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 4e-38
3k5w_A475 Carbohydrate kinase; 11206B,helicobacter pylori,PS 1e-32
1v8a_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 1e-15
1ekq_A272 Hydroxyethylthiazole kinase; alpha-beta, transfera 2e-12
3dzv_A273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 1e-05
3nl6_A540 Thiamine biosynthetic bifunctional enzyme; thiamin 7e-05
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Length = 502 Back     alignment and structure
 Score =  170 bits (434), Expect = 1e-48
 Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 35/309 (11%)

Query: 66  ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
             ++R + P      HKG  GK+ +I G R Y+GAP  + + +LK+G  L  +       
Sbjct: 225 REMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQN 284

Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
            +  S  PELI  PI           D E+   S + L E  +  +  D + +GPGLG +
Sbjct: 285 LIATSRFPELISVPI-----------DTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNN 333

Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
            ++ E V+E +K       P VID D + ++  S+      P AVLTP+  E  RL    
Sbjct: 334 EHVREFVNEFLKTL---EKPAVIDADAINVLDTSVLKERKSP-AVLTPHPGEMARL---- 385

Query: 246 LNCEVND-RDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGD 303
           +   V D +   EL +  AK+   V +L K  + +++DGE     +I G+     GG GD
Sbjct: 386 VKKTVGDVKYNYELAEEFAKENDCVLVL-KSATTIVTDGEKTL-FNITGNTGLSKGGSGD 443

Query: 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIE 363
           +L+G +A F+           +Q    +        L   AA L  +  +R    ++++ 
Sbjct: 444 VLTGMIAGFI-----------AQGLSPLEASTVSVYLHGFAAELF-EQDERGLTASELLR 491

Query: 364 CLGRSLEDI 372
            +  ++  +
Sbjct: 492 LIPEAIRRL 500
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A Length = 310 Back     alignment and structure
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Length = 311 Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Length = 279 Back     alignment and structure
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori} Length = 475 Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} SCOP: c.72.1.2 PDB: 3hpd_A Length = 265 Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Length = 272 Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Length = 273 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Length = 291 Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Length = 540 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 100.0
3rss_A502 Putative uncharacterized protein; unknown function 100.0
2r3b_A310 YJEF-related protein; putative kinase in the ribok 100.0
3bgk_A311 SMU.573, putative uncharacterized protein; alpha/b 100.0
3k5w_A475 Carbohydrate kinase; 11206B,helicobacter pylori,PS 100.0
3hpd_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 99.97
1v8a_A265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 99.97
3dzv_A273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 99.96
3nl6_A540 Thiamine biosynthetic bifunctional enzyme; thiamin 99.96
1ekq_A272 Hydroxyethylthiazole kinase; alpha-beta, transfera 99.95
3rm5_A 550 Hydroxymethylpyrimidine/phosphomethylpyrimidine K 99.94
2i5b_A271 Phosphomethylpyrimidine kinase; ADP complex, PDXK, 99.92
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 99.9
3h74_A282 Pyridoxal kinase; PSI-II, structural genomics, pro 99.89
3mbh_A291 Putative phosphomethylpyrimidine kinase; structura 99.88
1jxh_A288 Phosphomethylpyrimidine kinase; THID, ribokinase f 99.85
3pzs_A289 PM kinase, pyridoxamine kinase; structural genomic 99.81
3zs7_A300 Pyridoxal kinase; transferase, sleeping sickness; 99.75
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 99.71
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 99.37
3umo_A309 6-phosphofructokinase isozyme 2; glycolysis, trans 99.35
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 99.34
2yxt_A312 Pyridoxal kinase; beta sheet with alpha helix, met 99.3
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 99.3
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 99.3
3kzh_A328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 99.29
2fv7_A331 Ribokinase; structural genomics, structural genomi 99.24
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 99.22
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 99.18
4e84_A352 D-beta-D-heptose 7-phosphate kinase; LPS-heptose b 99.18
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 99.16
3iq0_A330 Putative ribokinase II; transferase,kinase,SAD,rib 99.16
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 99.16
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 99.15
3ktn_A346 Carbohydrate kinase, PFKB family; PFKB family,ribo 99.15
2f02_A323 Tagatose-6-phosphate kinase; LACC, structural geno 99.14
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 99.12
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 99.11
4e3a_A352 Sugar kinase protein; structural genomics, protein 99.1
3ljs_A338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 99.1
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 99.09
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 99.07
3vas_A370 Putative adenosine kinase; ribokinase, enzyme, tra 99.07
2afb_A351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 99.06
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 99.06
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 99.05
3kd6_A313 Carbohydrate kinase, PFKB family; nucleoside kinas 99.0
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 98.99
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 98.99
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 98.96
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 98.95
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 98.94
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 98.92
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 98.92
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 98.89
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 98.88
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 98.83
2abs_A383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 98.82
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 98.8
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 98.8
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 98.75
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 98.73
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 98.71
3b1n_A326 Ribokinase, putative; rossmann fold, ATP binding, 98.64
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 98.63
4gm6_A351 PFKB family carbohydrate kinase; enzyme function i 98.62
3uq6_A372 Adenosine kinase, putative; ribokinase, transferas 98.55
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 98.48
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 98.4
3bf5_A306 Ribokinase related protein; 10640157, putative rib 98.29
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
Probab=100.00  E-value=4.5e-53  Score=406.06  Aligned_cols=268  Identities=21%  Similarity=0.306  Sum_probs=222.8

Q ss_pred             cCChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeeccc
Q 017174           62 EADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPIL  141 (376)
Q Consensus        62 ~~~~~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~  141 (376)
                      .++.++ ++..+|+|++++|||++|+|+|||||.+|+||++||+.+|+|+|+|+||+++|++....+..+.||+|+.+- 
T Consensus         8 ~~~~~~-~~~~lp~r~~~~hKg~~G~vlvigGs~~~~GA~~laa~aAlr~GaGlv~~~~~~~~~~~~~~~~Pe~m~~~~-   85 (279)
T 3rpz_A            8 FWTEEH-VRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVIPLIVPVLPEATYWRD-   85 (279)
T ss_dssp             BCCHHH-HHHHCCCCCSSCCGGGGCEEEEECCBTTBCHHHHHHHHHHHTTTCSEEEEEECTTTHHHHTTTCTTCEEEET-
T ss_pred             cCCHHH-HHhhCCCCCCcCCCcCCCEEEEEeCCCCCCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhcCCeeEEccc-
Confidence            345444 678899999999999999999999999999999999999999999999999999999999999999998521 


Q ss_pred             ccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchh
Q 017174          142 EESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID  221 (376)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~  221 (376)
                       .             .++    ....++++++|+++||||++++++..+++..++    +.+.|+|||+|++++ .    
T Consensus        86 -~-------------~~~----~~~~~~l~~~davviGPGlg~~~~~~~~~~~~l----~~~~p~VlDAdal~~-~----  138 (279)
T 3rpz_A           86 -G-------------WKK----AADAQLEETYRAIAIGPGLPQTESVQQAVDHVL----TADCPVILDAGALAK-R----  138 (279)
T ss_dssp             -H-------------HHH----TTTSCCSSCCSEEEECTTCCCCHHHHHHHHHHT----TSSSCEEECGGGCCS-C----
T ss_pred             -c-------------ccc----hhhHhhccCCCEEEECCCCCCCHHHHHHHHHHH----hhCCCEEEECCccch-h----
Confidence             0             000    012234678999999999999887666555544    467899999999987 2    


Q ss_pred             hhcc-CCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC-CCC
Q 017174          222 LVSG-YPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCG  299 (376)
Q Consensus       222 ll~~-~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~-~t~  299 (376)
                      .+.. .+++|||||.+|+++|+|.+...  .++|+.+++++++++++ ++|++||.+|+|+++++.++++..|++. .++
T Consensus       139 ~l~~~~~~~vlTPN~~E~~~L~g~~~~~--~~~d~~~aa~~la~~~~-~~VvlKG~~~vi~~~~g~~~~~~~g~~~~at~  215 (279)
T 3rpz_A          139 TYPKREGPVILTPHPGEFFRMTGVPVNE--LQKKRAEYAKEWAAQLQ-TVIVLKGNQTVIAFPDGDCWLNPTGNGALAKG  215 (279)
T ss_dssp             CCCCCSSCEEECCCHHHHHHHHCCCHHH--HTTSHHHHHHHHHHHHT-SEEEECSTTCEEECTTSCEEECCCCCGGGCST
T ss_pred             hhhhccCCEEEecCHHHHHHHhCCCccc--hHHHHHHHHHHHHHHcC-eEEEEeCCCcEEECCCceEEEeCCCCCCCCCC
Confidence            1222 34899999999999999875321  12578899999999987 5788999999999887555677778876 599


Q ss_pred             CchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHhh
Q 017174          300 GQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKK-RSTLTTDIIECLGRSLEDI  372 (376)
Q Consensus       300 GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~-~~~~a~dii~~l~~~~~~l  372 (376)
                      ||||+|+|+|++|++   +|.++        .+|+..|+|+|+.||+.+.++.+ ++++|+||++.||++|+++
T Consensus       216 GtGD~Lag~iaa~lA---~g~~~--------~~A~~~a~~lh~~Ag~~a~~~~g~~~~~a~dl~~~lp~~~~~~  278 (279)
T 3rpz_A          216 GTGDTLTGMILGMLC---CHEDP--------KHAVLNAVYLHGACAELWTDEHSAHTLLAHELSDILPRVWKRF  278 (279)
T ss_dssp             THHHHHHHHHHHHHH---HCSSH--------HHHHHHHHHHHHHHHHHHHHHSCTTSCCHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHc
Confidence            999999999999999   88765        57888899999999999988765 8999999999999999986
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Back     alignment and structure
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A Back     alignment and structure
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Back     alignment and structure
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori} Back     alignment and structure
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Back     alignment and structure
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Back     alignment and structure
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis} Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Back     alignment and structure
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A* Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Back     alignment and structure
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A* Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Back     alignment and structure
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A* Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A* Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A* Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0 Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Back     alignment and structure
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601} Back     alignment and structure
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A* Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d2ax3a1278 c.72.1.4 (A:212-489) Hypothetical protein TM0922, 3e-41
d1kyha_275 c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus 1e-33
d1v8aa_264 c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kin 6e-15
d1ekqa_269 c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kin 1e-13
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein TM0922, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  144 bits (363), Expect = 3e-41
 Identities = 78/307 (25%), Positives = 132/307 (42%), Gaps = 31/307 (10%)

Query: 66  ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
             ++R + P      HKG  GK+ +I G R Y+GAP  + + +LK+G  L  +       
Sbjct: 2   REMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQN 61

Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
            +  S  PELI  PI  E    S              L E  +  +  D + +GPGLG +
Sbjct: 62  LIATSRFPELISVPIDTEKGFFSLQN-----------LQECLELSKDVDVVAIGPGLGNN 110

Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
            ++ E V+E +K       P VID D + ++     L      AVLTP+  E  RLV+  
Sbjct: 111 EHVREFVNEFLKTL---EKPAVIDADAINVLDT-SVLKERKSPAVLTPHPGEMARLVK-- 164

Query: 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDIL 305
                + +   EL +  AK+   V +L K  + +++DGE         +    GG GD+L
Sbjct: 165 -KTVGDVKYNYELAEEFAKENDCVLVL-KSATTIVTDGEKTLFNITGNTGLSKGGSGDVL 222

Query: 306 SGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECL 365
           +G +A F++   +  +A               S  L   A+  F+  +R    ++++  +
Sbjct: 223 TGMIAGFIAQGLSPLEA------------STVSVYLHGFAAELFEQDERGLTASELLRLI 270

Query: 366 GRSLEDI 372
             ++  +
Sbjct: 271 PEAIRRL 277
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Length = 275 Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 264 Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d2ax3a1278 Hypothetical protein TM0922, C-terminal domain {Th 100.0
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 100.0
d1ekqa_269 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba 99.97
d1v8aa_264 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar 99.97
d1jxha_266 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.93
d1ub0a_258 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 99.91
d1vi9a_288 Pyridoxamine kinase {Escherichia coli [TaxId: 562] 99.69
d1lhpa_309 Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940] 99.56
d2ajra1319 Putative sugar kinase TM0828 {Thermotoga maritima 99.2
d2f02a1313 Tagatose-6-phosphate kinase LacC {Enterococcus fae 98.91
d2abqa1306 Fructose 1-phosphate kinase FruB {Bacillus halodur 98.88
d1vk4a_288 Hypothetical protein TM0415 {Thermotoga maritima [ 98.15
d2afba1333 2-keto-3-deoxygluconate kinase {Thermotoga maritim 98.09
d1rkda_306 Ribokinase {Escherichia coli [TaxId: 562]} 97.91
d1bx4a_342 Adenosine kinase {Human (Homo sapiens) [TaxId: 960 97.88
d1vm7a_299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 97.65
d2dcna1308 Hypothetical fructokinase ST2478 {Sulfolobus tokod 97.5
d1v19a_302 2-keto-3-deoxygluconate kinase {Thermus thermophil 97.46
d1tyya_304 Aminoimidazole riboside kinase {Salmonella typhimu 97.3
d2fv7a1308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 97.1
d2absa1350 Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} 96.52
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 90.42
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: YjeF C-terminal domain-like
domain: Hypothetical protein TM0922, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-55  Score=419.88  Aligned_cols=275  Identities=28%  Similarity=0.437  Sum_probs=233.9

Q ss_pred             hhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeeccccccc
Q 017174           66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESY  145 (376)
Q Consensus        66 ~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~  145 (376)
                      ++++++++|+|++++|||++|+|++||||+.|+||++||+++|+|+|+|+|+++++......+....||+|+.++.++. 
T Consensus         2 ~~~~~~~lP~r~~~~hKg~~G~vliIgGS~~~~GA~ilaa~aAlr~GaGlv~v~~~~~~~~~~~~~~Pe~i~~~~~~~~-   80 (278)
T d2ax3a1           2 REMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQNLIATSRFPELISVPIDTEK-   80 (278)
T ss_dssp             HHHHHHHSCCCCSSCCGGGGCEEEEECCCSSCCSHHHHHHHHHHHTTCSEEEEEEETTTTHHHHHHCTTSEEEEECCSS-
T ss_pred             hHHHHHhcCCCCcccCCccCCeEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEechhhHHHHHhcCCceEEeeeeccc-
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999875432 


Q ss_pred             ccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc
Q 017174          146 NISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG  225 (376)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~  225 (376)
                                +.+..++++++.++.+++|+++||||++++++....+.+++.   ..+.|+|+|+|++..+..  +.+..
T Consensus        81 ----------~~~~~~~~~~~~~~~~~~~a~~iGpGlg~~~~~~~~~~~~~~---~~~~~~vldadal~~~~~--~~l~~  145 (278)
T d2ax3a1          81 ----------GFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFLK---TLEKPAVIDADAINVLDT--SVLKE  145 (278)
T ss_dssp             ----------SSCCGGGHHHHHHHHHTCSEEEECTTCCCSHHHHHHHHHHHH---HCCSCEEECHHHHHTCCH--HHHHT
T ss_pred             ----------ccccHHHHHHHHHhcccCCEEEecCCcccchHHHHHHHHHHh---ccchheecchhhhhhhhh--hhhhh
Confidence                      123345667777888899999999999999887777777664   367899999999987764  33433


Q ss_pred             CC-CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCCC-CCCchH
Q 017174          226 YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR-CGGQGD  303 (376)
Q Consensus       226 ~~-~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~~-t~GsGD  303 (376)
                      .+ +.|||||.+||+||++....   +.++..+.+++++++++ ++|++||.+|+|+++++.+ ++..|++.+ ++||||
T Consensus       146 ~~~~~IlTPH~gE~~rL~~~~~~---~~~~~~~~a~~~a~~~~-~~vvlKG~~t~i~~~~~~~-~~~~g~~~la~~GtGD  220 (278)
T d2ax3a1         146 RKSPAVLTPHPGEMARLVKKTVG---DVKYNYELAEEFAKEND-CVLVLKSATTIVTDGEKTL-FNITGNTGLSKGGSGD  220 (278)
T ss_dssp             CSSCEEECCCHHHHHHHHTCCHH---HHTTCHHHHHHHHHHHT-SEEEECSSSEEEECSSCEE-EECCCC-CCSSTTHHH
T ss_pred             cCCCEEeCCCHhHHHHHhhcccc---hhhhHHHHHHHHHHHcC-CcEEecCccccccCcccce-eecCCCCccccccchh
Confidence            33 79999999999999986532   12456788999999998 5788999999999888766 566788874 999999


Q ss_pred             HHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhhc
Q 017174          304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDIC  373 (376)
Q Consensus       304 vLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~~~~~~l~  373 (376)
                      +|+|+|++|+|   |+.++        ++|+..|+|+|+.||+.+. +.++|++|+||++.||.+|++|.
T Consensus       221 vLaGiIaallA---q~~~~--------~~A~~~a~~lhg~aa~~a~-~~~~g~~Asdi~~~ip~~~~~L~  278 (278)
T d2ax3a1         221 VLTGMIAGFIA---QGLSP--------LEASTVSVYLHGFAAELFE-QDERGLTASELLRLIPEAIRRLK  278 (278)
T ss_dssp             HHHHHHHHHHH---TTCCH--------HHHHHHHHHHHHHHHHTCS-SCGGGCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHHHHHHHHcC
Confidence            99999999999   88765        6889999999999999874 45689999999999999999873
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure