Citrus Sinensis ID: 017225

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----

MGYGRLQPSSDPGGSSFREDQPGHATSAPQPSSRSRKKLILLSVLSFALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAGGESDDFSGVPIQNRRRRLLSSEEEEDDTWGENDDDDIAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFGK

cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEEcccccccccHHHHHHHccccccccEEEEEEccccccccEEEcccccEEEEEEcccccEEEEccccccccccccccccccc

ccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEccEEEEEcEEEccccccEEEEEcccccEEEEEccccccccccHHHccEcc

mgygrlqpssdpggssfredqpghatsapqpssrsrkKLILLSVLSFALIIASAVSAVLLVGLktravgptighkptqaisrtcsktlypnlcvssllnfpgsltaseqdLVHISFNMTLQHFSRALYftsgisylqmdphvrSAFDDCLELLDDSVDALSRSLGSvlllpggdinkrEDVLTWLSAALTnhdtcsegfedlngpvkdqVSDKLKDLSELVSNCLAIFsaggesddfsgvpiqnrrrrllsseeeeddtwgenddddiaprwvSRETrrllslpvphiqadiivskdgtgTVKTIAEAIKkapensdrrTIIYVRAgryeesnlkvgrkkrnlmfigdgkgktiitggrnvfdklttfhtasfgk

mgygrlqpssdpggssfredqpghatsapqpssrsrKKLILLSVLSFALIIASAVSAVLLVGLKTravgptighkptqaisrTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFsaggesddfsgvpiqnrrrrllsseeeeddtwgenddddiaprWVSRETrrllslpvphiqadiivskdgtgtVKTIAEaikkapensdrrtiiyvragryeesnlkvgrkkrnlmfigdgkgktiitggrnvFDKLTtfhtasfgk

MGYGRLQPSSDPGGSSFREDQPGHATSAPQPssrsrkklillsvlsFALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAGGESDDFSGVPIQNrrrrllsseeeeddtwgenddddIAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFigdgkgktiitggRNVFDKLTTFHTASFGK

*************************************KLILLSVLSFALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLN**********LKDLSELVSNCLAIFSA****************************************RWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIK*******RRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHT*****

***G************************************LLSVLSFALIIASAVSAVLL********************SRTCSKTLYPNLCVS***************LVHISFNMTLQHFSRAL*****************AFDDCLELLDDSVDALSRSLG**********NKREDVLTWLSAALTNHDTCSEGFE**************KDLSELVSNCLAIFSAGGESDDFSGV*IQN***RLL*************DDDDIAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFGK

***********************************RKKLILLSVLSFALIIASAVSAVLLVGLKTRAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAGGESDDFSGVPIQNRRRR**************NDDDDIAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFGK

*********************************RSRKKLILLSVLSFALIIASAVSAVLLVGLK**********KPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAGGESDDFSGVPIQNR**********************IAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFG*

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		375	2.2.26 [Sep-21-2011]
Q9FK05		587	Probable pectinesterase/p	yes	no	0.930	0.594	0.572	1e-114
Q9M3B0		598	Probable pectinesterase/p	no	no	0.954	0.598	0.556	1e-109
Q43143		583	Pectinesterase/pectineste	N/A	no	0.84	0.540	0.329	2e-43
P83948		584	Pectinesterase 3 OS=Citru	no	no	0.789	0.506	0.334	7e-40
O49006		592	Pectinesterase/pectineste	no	no	0.88	0.557	0.337	7e-40
Q8GX86		669	Probable pectinesterase/p	no	no	0.832	0.466	0.317	1e-37
O04886		584	Pectinesterase 1 OS=Citru	no	no	0.789	0.506	0.337	3e-37
Q42534		587	Pectinesterase 2 OS=Arabi	no	no	0.741	0.473	0.344	4e-36
Q3E8Z8		732	Putative pectinesterase/p	no	no	0.834	0.427	0.301	2e-35
Q43867		586	Pectinesterase 1 OS=Arabi	no	no	0.853	0.546	0.302	2e-34

>sp\|Q9FK05\|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1	Back alignment and function desciption

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/379 (57%), Positives = 274/379 (72%), Gaps = 30/379 (7%)

Query: 1   MGYGRLQPSSDPGGSSFREDQPGHATSAPQPSSRSRKKLILLSVLSFALIIASAVSAVLL 60
           MGY RL PS   G S+  +  P  ATS P+   +++ KLIL ++   A+++   V   + 
Sbjct: 1   MGYDRLGPS---GPSNPNQKDP--ATSLPELQKKTKTKLILFTL---AVLVVGVVCFGIF 52

Query: 61  VGLKTRAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFN 117
            G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN
Sbjct: 53  AGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFN 112

Query: 118 MTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINK 177
            TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +   
Sbjct: 113 ATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--S 170

Query: 178 REDVLTWLSAALTNHDTCSEGFEDLNG---PVKDQVSDKLKDLSELVSNCLAIFSAGGES 234
             DV+TWLS+A+TNHDTC++GF+++ G    VKDQV   +KDLSE+VSNCLAIF+  G+ 
Sbjct: 171 HSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFA--GKV 228

Query: 235 DDFSGVPIQNRRRRLLSSEEEEDDTWGENDDDDIAPRWVSRETRRLLSLPVPHIQADIIV 294
            D SGVP+ N R+ LL +EE E+            P W+ RE R LL  P   IQADI V
Sbjct: 229 KDLSGVPVVNNRK-LLGTEETEE-----------LPNWLKREDRELLGTPTSAIQADITV 276

Query: 295 SKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTI 354
           SKDG+GT KTIAEAIKKAPE+S RR +IYV+AGRYEE NLKVGRKK NLMFIGDGKGKT+
Sbjct: 277 SKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRYEEENLKVGRKKTNLMFIGDGKGKTV 336

Query: 355 ITGGRNVFDKLTTFHTASF 373
           ITGG+++ D LTTFHTA+F
Sbjct: 337 ITGGKSIADDLTTFHTATF 355

Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp\|Q9M3B0\|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1	Back alignment and function description

>sp\|Q43143\|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1	Back alignment and function description

>sp\|P83948\|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1	Back alignment and function description

>sp\|O49006\|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2	Back alignment and function description

>sp\|Q8GX86\|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2	Back alignment and function description

>sp\|O04886\|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1	Back alignment and function description

>sp\|Q42534\|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2	Back alignment and function description

>sp\|Q3E8Z8\|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1	Back alignment and function description

>sp\|Q43867\|PME1_ARATH Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		375
224135163		605	predicted protein [Populus trichocarpa]	0.968	0.6	0.646	1e-129
119507461		617	pectin methylesterase 1 [Pyrus communis]	0.981	0.596	0.635	1e-124
225455386		597	PREDICTED: probable pectinesterase/pecti	0.957	0.601	0.601	1e-118
356516053		584	PREDICTED: probable pectinesterase/pecti	0.928	0.595	0.640	1e-117
357436491		609	Pectinesterase [Medicago truncatula] gi\|	0.962	0.592	0.585	1e-116
449456965		605	PREDICTED: probable pectinesterase/pecti	0.970	0.601	0.588	1e-116
357463913		599	Pectinesterase [Medicago truncatula] gi\|	0.944	0.590	0.592	1e-116
356507580		636	PREDICTED: probable pectinesterase/pecti	0.92	0.542	0.609	1e-115
15238729		587	Putative pectinesterase/pectinesterase i	0.930	0.594	0.572	1e-112
224118274		550	predicted protein [Populus trichocarpa]	0.768	0.523	0.698	1e-111

>gi\|224135163\|ref\|XP_002321999.1\| predicted protein [Populus trichocarpa] gi\|222868995\|gb\|EEF06126.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/385 (64%), Positives = 299/385 (77%), Gaps = 22/385 (5%)

Query: 1   MGYGRLQPS-SDPG---GSSFREDQPGHATSAPQPSSRSRKKLILLSVLSFALIIASAVS 56
           M YGRL P+ SDPG   G+SF  ++P  AT  P+ S   +K++I L++ S ALI ASAVS
Sbjct: 1   MDYGRLGPTESDPGEGSGTSFNINEPQLAT--PRVSPTRKKRIIFLAIFSIALIAASAVS 58

Query: 57  AVLLVGLKTRAVG----PTIGH-KPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDL 111
           AVLL+G++T+A G     ++ H KPTQAIS+TCSKT +PNLCVSSLL+FPGS++ASE DL
Sbjct: 59  AVLLLGIRTKASGQPDPSSLTHRKPTQAISKTCSKTRFPNLCVSSLLDFPGSVSASESDL 118

Query: 112 VHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVL--L 169
           VHISFNMTLQHFS+ALY +S ISY+ M+  VRSAFDDCLELLDDS+DALSRSL +V    
Sbjct: 119 VHISFNMTLQHFSKALYLSSAISYVNMETRVRSAFDDCLELLDDSIDALSRSLSTVAPSH 178

Query: 170 LPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFS 229
             G       DV+TWLSAALTN DTCSEGF+ +NG VK+Q++ +LKDL+ELVSNCLAIFS
Sbjct: 179 GGGTGGGSPADVVTWLSAALTNQDTCSEGFDGVNGAVKNQMTGRLKDLTELVSNCLAIFS 238

Query: 230 AGGESDDFSGVPIQNRRRRLLSSEEEEDDTWGENDDDDIAPRWVSRETRRLLSLPVPHIQ 289
           +    DDFSGVP+QN+RR L    E ED ++ EN      PRW+ R  R+LL +PVP I 
Sbjct: 239 SA-NGDDFSGVPVQNKRRLL---TENEDISYEEN-----FPRWLGRRDRKLLDVPVPAIH 289

Query: 290 ADIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDG 349
           ADIIVS DG GT KTI+EAIKKAPE S RRT+IYVRAGRYEE+NLKVGRKK NLMFIGDG
Sbjct: 290 ADIIVSGDGNGTCKTISEAIKKAPEYSTRRTVIYVRAGRYEENNLKVGRKKWNLMFIGDG 349

Query: 350 KGKTIITGGRNVFDKLTTFHTASFG 374
           KGKTII+GG++V + LTTFHTASF 
Sbjct: 350 KGKTIISGGKSVLNNLTTFHTASFA 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|119507461\|dbj\|BAF42038.1\| pectin methylesterase 1 [Pyrus communis]	Back alignment and taxonomy information

>gi\|225455386\|ref\|XP_002278061.1\| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356516053\|ref\|XP_003526711.1\| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Glycine max]	Back alignment and taxonomy information

>gi\|357436491\|ref\|XP_003588521.1\| Pectinesterase [Medicago truncatula] gi\|355477569\|gb\|AES58772.1\| Pectinesterase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449456965\|ref\|XP_004146219.1\| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cucumis sativus] gi\|449511042\|ref\|XP_004163847.1\| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357463913\|ref\|XP_003602238.1\| Pectinesterase [Medicago truncatula] gi\|355491286\|gb\|AES72489.1\| Pectinesterase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356507580\|ref\|XP_003522542.1\| PREDICTED: probable pectinesterase/pectinesterase inhibitor 61-like [Glycine max]	Back alignment and taxonomy information

>gi|15238729|ref|NP_200149.1| Putative pectinesterase/pectinesterase inhibitor 61 [Arabidopsis thaliana] gi|75309150|sp|Q9FK05.1|PME61_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 61; Includes: RecName: Full=Pectinesterase inhibitor 61; AltName: Full=Pectin methylesterase inhibitor 61; Includes: RecName: Full=Pectinesterase 61; Short=PE 61; AltName: Full=AtPMEpcrF; AltName: Full=Pectin methylesterase 61; Short=AtPME61 gi|13507549|gb|AAK28637.1|AF360340_1 putative pectinesterase [Arabidopsis thaliana] gi|9759184|dbj|BAB09799.1| pectinesterase [Arabidopsis thaliana] gi|15293287|gb|AAK93754.1| putative pectinesterase [Arabidopsis thaliana] gi|332008962|gb|AED96345.1| Putative pectinesterase/pectinesterase inhibitor 61 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224118274\|ref\|XP_002317777.1\| predicted protein [Populus trichocarpa] gi\|222858450\|gb\|EEE95997.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		375
TAIR\|locus:2154277		587	PMEPCRF "pectin methylesterase	0.930	0.594	0.514	3.6e-89
TAIR\|locus:2082951		598	AT3G49220 [Arabidopsis thalian	0.952	0.596	0.489	4.3e-86
TAIR\|locus:2091000		592	PME3 "pectin methylesterase 3"	0.853	0.540	0.292	1.3e-32
TAIR\|locus:2197056		587	PME2 "pectin methylesterase 2"	0.853	0.545	0.290	2.6e-30
TAIR\|locus:2078057		669	AT3G05610 [Arabidopsis thalian	0.797	0.446	0.290	3.5e-26
TAIR\|locus:2197061		586	PME1 "pectin methylesterase 1"	0.826	0.529	0.258	1e-24
TAIR\|locus:2143340		732	AT5G27870 [Arabidopsis thalian	0.8	0.409	0.259	3.8e-24
TAIR\|locus:2200076		557	PMEPCRA "methylesterase PCR A"	0.272	0.183	0.409	1.8e-23
TAIR\|locus:2091070		968	ATPMEPCRC [Arabidopsis thalian	0.642	0.248	0.258	3.5e-20
TAIR\|locus:2201230		554	AT1G23200 [Arabidopsis thalian	0.789	0.534	0.269	5.9e-22

TAIR\|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 195/379 (51%), Positives = 243/379 (64%)

Query:     1 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLL 60
             MGY RL PS   G S+  +  P  ATS P+                 A+++   V   + 
Sbjct:     1 MGYDRLGPS---GPSNPNQKDP--ATSLPE---LQKKTKTKLILFTLAVLVVGVVCFGIF 52

Query:    61 VGLKTRAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFN 117
              G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN
Sbjct:    53 AGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFN 112

Query:   118 MTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINK 177
              TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +   
Sbjct:   113 ATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--S 170

Query:   178 REDVLTWLSAALTNHDTCSEGFEDLNGP---VKDQVSDKLKDLSELVSNCLAIFSAGGES 234
               DV+TWLS+A+TNHDTC++GF+++ G    VKDQV   +KDLSE+VSNCLAIF+  G+ 
Sbjct:   171 HSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFA--GKV 228

Query:   235 DDFSGVPIQNXXXXXXXXXXXXXXXXXXXXXXXIAPRWVSRETRRLLSLPVPHIQADIIV 294
              D SGVP+ N                         P W+ RE R LL  P   IQADI V
Sbjct:   229 KDLSGVPVVNNRKLLGTEETEEL------------PNWLKREDRELLGTPTSAIQADITV 276

Query:   295 SKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFXXXXXXXXX 354
             SKDG+GT KTIAEAIKKAPE+S RR +IYV+AGRYEE NLKVGRKK NLMF         
Sbjct:   277 SKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRYEEENLKVGRKKTNLMFIGDGKGKTV 336

Query:   355 XXXXRNVFDKLTTFHTASF 373
                 +++ D LTTFHTA+F
Sbjct:   337 ITGGKSIADDLTTFHTATF 355

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0030599 "pectinesterase activity" evidence=IEA;ISS

GO:0042545 "cell wall modification" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR\|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2197061 PME1 "pectin methylesterase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091070 ATPMEPCRC [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XV.413.1	pectinesterase family protein (EC-3.1.1.11) (570 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.41450001	hypothetical protein (176 aa)	•	0.455

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		375
PLN02484		587	PLN02484, PLN02484, probable pectinesterase/pectin	0.0
PLN02314		586	PLN02314, PLN02314, pectinesterase	7e-56
PLN02468		565	PLN02468, PLN02468, putative pectinesterase/pectin	2e-54
PLN02301		548	PLN02301, PLN02301, pectinesterase/pectinesterase	4e-52
PLN02313		587	PLN02313, PLN02313, Pectinesterase/pectinesterase	5e-51
PLN02745		596	PLN02745, PLN02745, Putative pectinesterase/pectin	4e-49
PLN02506		537	PLN02506, PLN02506, putative pectinesterase/pectin	1e-46
PLN02170		529	PLN02170, PLN02170, probable pectinesterase/pectin	3e-45
smart00856		148	smart00856, PMEI, Plant invertase/pectin methylest	4e-44
PLN02201		520	PLN02201, PLN02201, probable pectinesterase/pectin	5e-42
PLN02217		670	PLN02217, PLN02217, probable pectinesterase/pectin	2e-41
TIGR01614		178	TIGR01614, PME_inhib, pectinesterase inhibitor dom	1e-40
pfam04043		145	pfam04043, PMEI, Plant invertase/pectin methyleste	2e-39
pfam01095		298	pfam01095, Pectinesterase, Pectinesterase	3e-38
PLN02933		530	PLN02933, PLN02933, Probable pectinesterase/pectin	3e-36
PLN02416		541	PLN02416, PLN02416, probable pectinesterase/pectin	5e-36
PLN02990		572	PLN02990, PLN02990, Probable pectinesterase/pectin	1e-35
PLN02713		566	PLN02713, PLN02713, Probable pectinesterase/pectin	2e-33
PLN02995		539	PLN02995, PLN02995, Probable pectinesterase/pectin	6e-32
PLN02916		502	PLN02916, PLN02916, pectinesterase family protein	3e-29
PLN02488		509	PLN02488, PLN02488, probable pectinesterase/pectin	8e-25
PLN02708		553	PLN02708, PLN02708, Probable pectinesterase/pectin	3e-24
PLN03043		538	PLN03043, PLN03043, Probable pectinesterase/pectin	8e-24
PLN02698		497	PLN02698, PLN02698, Probable pectinesterase/pectin	1e-22
PLN02197		588	PLN02197, PLN02197, pectinesterase	4e-15
PLN02665		366	PLN02665, PLN02665, pectinesterase family protein	4e-07
PLN02497		331	PLN02497, PLN02497, probable pectinesterase	5e-06
PLN02480		343	PLN02480, PLN02480, Probable pectinesterase	1e-05
PLN02634		359	PLN02634, PLN02634, probable pectinesterase	2e-04
PLN02682		369	PLN02682, PLN02682, pectinesterase family protein	4e-04
PLN02671		359	PLN02671, PLN02671, pectinesterase	5e-04

>gnl\|CDD\|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

 Score =  529 bits (1364), Expect = 0.0
 Identities = 240/378 (63%), Positives = 282/378 (74%), Gaps = 28/378 (7%)

Query: 1   MGYGRLQPSSDPGGSSFREDQPGHATSAPQPSSRSRKKLILLSVLSFALIIASAVSAVLL 60
           MGYGRL PS    G+S        AT+ P+   R + KL+L S+    L+I SAV+A + 
Sbjct: 1   MGYGRLGPS----GASGPNQT-STATALPELRRRRKTKLVLFSI---VLLIVSAVAAAIF 52

Query: 61  VGLKTRAVG----PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISF 116
            G++ +A G     ++  KPTQAIS+TCSKT +PNLCV SLL+FPGSLTASE DL+HISF
Sbjct: 53  AGVRAKASGQTSPKSLHRKPTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISF 112

Query: 117 NMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDIN 176
           NMTLQHFS+ALY +S ISY+QM P VRSA+D CLELLDDSVDALSR+L SV+  P     
Sbjct: 113 NMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLDDSVDALSRALSSVV--PSSGGG 170

Query: 177 KREDVLTWLSAALTNHDTCSEGFEDLN-GPVKDQVSDKLKDLSELVSNCLAIFSAGGESD 235
             +DV+TWLSAALTNHDTC+EGF+ +N G VKDQ++  LKDLSELVSNCLAIFSA     
Sbjct: 171 SPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKDQMTGALKDLSELVSNCLAIFSASNG-G 229

Query: 236 DFSGVPIQNRRRRLLSSEEEEDDTWGENDDDDIAPRWVSRETRRLLSLPVPHIQADIIVS 295
           DFSGVPIQNRRR L   E+               PRW+ R  R LL +PV  IQADIIVS
Sbjct: 230 DFSGVPIQNRRRLLTEEEDIS------------FPRWLGRRERELLGMPVSAIQADIIVS 277

Query: 296 KDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTII 355
           KDG GT KTI+EAIKKAPE+S RRTIIYV+AGRYEE+NLKVGRKK NLMFIGDGKGKT+I
Sbjct: 278 KDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVI 337

Query: 356 TGGRNVFDKLTTFHTASF 373
           TGG+++FD LTTFHTASF
Sbjct: 338 TGGKSIFDNLTTFHTASF 355

Length = 587

>gnl\|CDD\|215179 PLN02314, PLN02314, pectinesterase	Back alignment and domain information

>gnl\|CDD\|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain	Back alignment and domain information

>gnl\|CDD\|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|216297 pfam01095, Pectinesterase, Pectinesterase	Back alignment and domain information

>gnl\|CDD\|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178504 PLN02916, PLN02916, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional	Back alignment and domain information

>gnl\|CDD\|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|177848 PLN02197, PLN02197, pectinesterase	Back alignment and domain information

>gnl\|CDD\|215357 PLN02665, PLN02665, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178113 PLN02497, PLN02497, probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|178098 PLN02480, PLN02480, Probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|215340 PLN02634, PLN02634, probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|215367 PLN02682, PLN02682, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178276 PLN02671, PLN02671, pectinesterase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		375
PLN02484		587	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02217		670	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02314		586	pectinesterase	100.0
PLN02468		565	putative pectinesterase/pectinesterase inhibitor	100.0
PLN02313		587	Pectinesterase/pectinesterase inhibitor	100.0
PLN02990		572	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02197		588	pectinesterase	100.0
PLN02745		596	Putative pectinesterase/pectinesterase inhibitor	100.0
PLN02506		537	putative pectinesterase/pectinesterase inhibitor	100.0
PLN02301		548	pectinesterase/pectinesterase inhibitor	100.0
PLN02713		566	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02416		541	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02995		539	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02708		553	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN03043		538	Probable pectinesterase/pectinesterase inhibitor;	100.0
PLN02488		509	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02933		530	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02201		520	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02170		529	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02916		502	pectinesterase family protein	100.0
PLN02698		497	Probable pectinesterase/pectinesterase inhibitor	100.0
smart00856		148	PMEI Plant invertase/pectin methylesterase inhibit	99.96
TIGR01614		178	PME_inhib pectinesterase inhibitor domain. This mo	99.96
PF04043		152	PMEI: Plant invertase/pectin methylesterase inhibi	99.94
PLN02671		359	pectinesterase	99.93
PLN02682		369	pectinesterase family protein	99.89
PLN02304		379	probable pectinesterase	99.88
PLN02665		366	pectinesterase family protein	99.87
PLN02497		331	probable pectinesterase	99.86
PLN02634		359	probable pectinesterase	99.86
PLN02773		317	pectinesterase	99.86
PF01095		298	Pectinesterase: Pectinesterase; InterPro: IPR00007	99.85
PLN02176		340	putative pectinesterase	99.85
PLN02432		293	putative pectinesterase	99.83
PRK10531		422	acyl-CoA thioesterase; Provisional	99.82
PLN02480		343	Probable pectinesterase	99.79
COG4677		405	PemB Pectin methylesterase [Carbohydrate transport	99.34
TIGR03805		314	beta_helix_1 parallel beta-helix repeat-containing	97.61
PF07602		246	DUF1565: Protein of unknown function (DUF1565); In	97.19
PF12708		225	Pectate_lyase_3: Pectate lyase superfamily protein	93.84
PF14592		425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	93.07
TIGR03808		455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	86.46

>PLN02484 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

Probab=100.00  E-value=3.8e-78  Score=626.77  Aligned_cols=348  Identities=68%  Similarity=1.037  Sum_probs=289.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhhhhccccCCCC--C-CCC---C
Q 017225            1 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPSSRSRKKLILLSVLSFALIIASAVSAVLLVGLKTRAVG--P-TIG---H   74 (375)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~illv~~vi~vv~~~~v~~~~~~--~-~~~---~   74 (375)
                      |||+||||++ +..+.+..    .+..  .+..| ++||++|+++|++|||++|++++  +++..++++  + +.+   .
T Consensus         1 ~~~~~~~~~~-~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~   70 (587)
T PLN02484          1 MGYGRLGPSG-ASGPNQTS----TATA--LPELR-RRRKTKLVLFSIVLLIVSAVAAA--IFAGVRAKASGQTSPKSLHR   70 (587)
T ss_pred             CCccccCCCC-CCCCCCCc----cccC--chhhc-ccceEhHHHHHHHHHHHHHHhhe--EEEeccccCCCCCCCCcccc
Confidence            9999999999 44441100    1111  23334 46799999999999999999888  445443222  1 111   2


Q ss_pred             CcchHHHcccCCCCChhchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q 017225           75 KPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLD  154 (375)
Q Consensus        75 ~~~~~V~~~C~~T~yp~~C~ssLs~~p~s~~~dp~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~d~~~k~AL~dC~ely~  154 (375)
                      .++..|+++|++|+||++|+++|++.|.+...+|++|++++++++++++.++......+.....+++++.||+||+|+|+
T Consensus        71 ~~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r~k~AL~DClELld  150 (587)
T PLN02484         71 KPTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLD  150 (587)
T ss_pred             ChhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHH
Confidence            24569999999999999999999999887778999999999999999999988776655443468899999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhchhHHHhhhcCC-CCCCcchhhhHHHHHHHHHHHHHHHHhcCCC
Q 017225          155 DSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDL-NGPVKDQVSDKLKDLSELVSNCLAIFSAGGE  233 (375)
Q Consensus       155 ~Aid~L~~s~~~L~~~~~~~~~~~~Dl~TWLSAAlT~q~TC~DGF~~~-~~~v~~~l~~~~~~~~~L~SNaLAIv~~l~~  233 (375)
                      +|+|+|++++.+|.... . ...++|++||||||||||+||+|||++. ++.++++|.+.+.++.+|+||||||++.+++
T Consensus       151 dAid~L~~Sl~~l~~~~-~-~~~~~DvkTWLSAALTnq~TClDGF~e~~~~~vk~~m~~~l~~l~~LtSNALAIi~~~~~  228 (587)
T PLN02484        151 DSVDALSRALSSVVPSS-G-GGSPQDVVTWLSAALTNHDTCTEGFDGVNGGEVKDQMTGALKDLSELVSNCLAIFSASNG  228 (587)
T ss_pred             HHHHHHHHHHHHHhccc-c-ccchHHHHhHHHHHhccHhhHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999987411 1 3567999999999999999999999865 2468899999999999999999999999876


Q ss_pred             CCCCCCCccccccccccCccccccccCCCCCCCCCcCcccccccccccCCCCCCcceeEEEeCCCCCCcchHHHHHHhCC
Q 017225          234 SDDFSGVPIQNRRRRLLSSEEEEDDTWGENDDDDIAPRWVSRETRRLLSLPVPHIQADIIVSKDGTGTVKTIAEAIKKAP  313 (375)
Q Consensus       234 ~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~P~W~~~~dRrlL~~~~~~~~~~~~V~~dg~g~f~tI~~Ai~~~p  313 (375)
                      . ++...+. ..+|||++++           .+++||+|++..||||||.+...++++++|++||+|+|+||||||+++|
T Consensus       229 ~-~~~~~~~-~~~r~l~~~~-----------~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P  295 (587)
T PLN02484        229 G-DFSGVPI-QNRRRLLTEE-----------EDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAP  295 (587)
T ss_pred             c-ccccccc-cccccccccc-----------ccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhcc
Confidence            3 2222121 1468888742           2459999999999999998766789999999999999999999999999


Q ss_pred             cCCCceEEEEEeeceEEeeE-EEEcCccCCEEEEecCCCCeEEEcCcccCCCCCCCcccccc
Q 017225          314 ENSDRRTIIYVRAGRYEESN-LKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFG  374 (375)
Q Consensus       314 ~~~~~~~~I~i~~G~Y~E~~-v~i~~~~~~i~l~Gdg~~~tiI~~~~~~~~g~~t~~saT~~  374 (375)
                      .++.+|++||||+|+|+| + |.||++|+||||+|||+++|||||++++.+|++||+||||+
T Consensus       296 ~~~~~r~vI~Ik~G~Y~E-~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~  356 (587)
T PLN02484        296 EHSSRRTIIYVKAGRYEE-NNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFA  356 (587)
T ss_pred             ccCCCcEEEEEeCCEEEE-EEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEE
Confidence            999999999999999999 8 99999999999999999999999999998999999999985

>PLN02217 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02314 pectinesterase	Back alignment and domain information

>PLN02468 putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02313 Pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02990 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02197 pectinesterase	Back alignment and domain information

>PLN02745 Putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02506 putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02301 pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02713 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02416 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02995 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02708 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional	Back alignment and domain information

>PLN02488 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02933 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02201 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02170 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02916 pectinesterase family protein	Back alignment and domain information

>PLN02698 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>TIGR01614 PME_inhib pectinesterase inhibitor domain	Back alignment and domain information

>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues	Back alignment and domain information

>PLN02671 pectinesterase	Back alignment and domain information

>PLN02682 pectinesterase family protein	Back alignment and domain information

>PLN02304 probable pectinesterase	Back alignment and domain information

>PLN02665 pectinesterase family protein	Back alignment and domain information

>PLN02497 probable pectinesterase	Back alignment and domain information

>PLN02634 probable pectinesterase	Back alignment and domain information

>PLN02773 pectinesterase	Back alignment and domain information

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3	Back alignment and domain information

>PLN02176 putative pectinesterase	Back alignment and domain information

>PLN02432 putative pectinesterase	Back alignment and domain information

>PRK10531 acyl-CoA thioesterase; Provisional	Back alignment and domain information

>PLN02480 Probable pectinesterase	Back alignment and domain information

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein	Back alignment and domain information

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans	Back alignment and domain information

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A	Back alignment and domain information

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A	Back alignment and domain information

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		375
1gq8_A		319	Pectin Methylesterase From Carrot Length = 319		2e-11
1xg2_A		317	Crystal Structure Of The Complex Between Pectin Met		1e-10
1xg2_B		153	Crystal Structure Of The Complex Between Pectin Met		5e-06

>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319

Back alignment and structure

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 291 DIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFXXXXX 350
           +++V+ DG+G  KT++EA+  APE+S  R +I ++AG Y E N+ V +KK+N+MF     
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRE-NVDVPKKKKNIMFLGDGR 66
Query: 351 XXXXXXXXRNVFDKLTTFHTAS 372
                   +NV D  TTF++A+
Sbjct: 67  TSTIITASKNVQDGSTTFNSAT 88

PyMOL of 1gq8

>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317

Back alignment and structure

>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 153

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		375
1xg2_B		153	Pectinesterase inhibitor; protein-protein complex,	1e-40
1x91_A		153	Invertase/pectin methylesterase inhibitor family p	6e-39
2cj4_A		150	Invertase inhibitor; protein binding, four-helix b	3e-32
1xg2_A		317	Pectinesterase 1; protein-protein complex, beta he	3e-32
1gq8_A		319	Pectinesterase; hydrolase, carboxylic ester hydrol	5e-32
3uw0_A		364	Pectinesterase; right-handed beta-helix, carbohydr	8e-27
2nsp_A		342	Pectinesterase A; michaelis complex, hydrolase; HE	7e-23
3grh_A		422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	7e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153	Back alignment and structure

 Score =  139 bits (352), Expect = 1e-40
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 80  ISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMD 139
           IS  C KT  P+LC+ +L + P S +   + L   S ++      +     + ++    D
Sbjct: 6   ISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATD 65

Query: 140 PHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGF 199
           P ++  ++ C E   D++D+L ++      L  GD N    +  + SAA     TC + F
Sbjct: 66  PKLKGRYETCSENYADAIDSLGQAKQF---LTSGDYN---SLNIYASAAFDGAGTCEDSF 119

Query: 200 EDLNGPVKDQVSDKLKDLSELVSNCLAI 227
           E     +  Q+      L +L    L I
Sbjct: 120 EG-PPNIPTQLHQADLKLEDLCDIVLVI 146

PyMOL of 1xg2

>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153	Back alignment and structure

>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150	Back alignment and structure

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317	Back alignment and structure

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319	Back alignment and structure

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364	Back alignment and structure

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342	Back alignment and structure

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		375
1xg2_B		153	Pectinesterase inhibitor; protein-protein complex,	99.98
1x91_A		153	Invertase/pectin methylesterase inhibitor family p	99.97
2cj4_A		150	Invertase inhibitor; protein binding, four-helix b	99.97
1xg2_A		317	Pectinesterase 1; protein-protein complex, beta he	99.86
1gq8_A		319	Pectinesterase; hydrolase, carboxylic ester hydrol	99.86
3grh_A		422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	99.78
2nsp_A		342	Pectinesterase A; michaelis complex, hydrolase; HE	99.77
3uw0_A		364	Pectinesterase; right-handed beta-helix, carbohydr	99.76
1ru4_A		400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	97.73
1dbg_A		506	Chondroitinase B; beta helix, polysaccharide lyase	97.15
2pyg_A		377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	94.37
2inu_A		410	Insulin fructotransferase; right-handed parallel b	93.26
3eqn_A		758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	85.45
1bhe_A		376	PEHA, polygalacturonase; family 28 glycosyl hydrol	83.36

>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}	Back alignment and structure

Probab=99.98  E-value=7e-32  Score=234.96  Aligned_cols=149  Identities=21%  Similarity=0.344  Sum_probs=137.7

Q ss_pred             chHHHcccCCCCChhchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHH
Q 017225           77 TQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDS  156 (375)
Q Consensus        77 ~~~V~~~C~~T~yp~~C~ssLs~~p~s~~~dp~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~d~~~k~AL~dC~ely~~A  156 (375)
                      .+.|+.+|+.|+||++|+++|.++|.+..+||++|+++++++++.++..+...+..+.....+++.+.||+||.|+|+++
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a   82 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADA   82 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998777899999999999999999999999999876556899999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhchhHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHhcCC
Q 017225          157 VDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAGG  232 (375)
Q Consensus       157 id~L~~s~~~L~~~~~~~~~~~~Dl~TWLSAAlT~q~TC~DGF~~~~~~v~~~l~~~~~~~~~L~SNaLAIv~~l~  232 (375)
                      +++|++++..|..      .+++|+++|||+|+||++||+|||.+.+ .++++|...+.++.+|++|+|||++.+.
T Consensus        83 ~~~L~~a~~~l~~------~~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1xg2_B           83 IDSLGQAKQFLTS------GDYNSLNIYASAAFDGAGTCEDSFEGPP-NIPTQLHQADLKLEDLCDIVLVISNLLP  151 (153)
T ss_dssp             HHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHHHHCCSSS-CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHh------CCHHHHHHHHHHHhcccchHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999984      5689999999999999999999998753 5778999999999999999999999875

PyMOL of 1xg2

>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A	Back alignment and structure

>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*	Back alignment and structure

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}	Back alignment and structure

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5	Back alignment and structure

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}	Back alignment and structure

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A	Back alignment and structure

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}	Back alignment and structure

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9	Back alignment and structure

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*	Back alignment and structure

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*	Back alignment and structure

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*	Back alignment and structure

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*	Back alignment and structure

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		375
d2cj4a1		147	a.29.6.1 (A:4-150) Invertase inhibitor {Common tob	1e-34
d1x91a_		149	a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P	1e-34
d1gq8a_		319	b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (	1e-27
d1qjva_		342	b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia	4e-18
d1ofla_		481	b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin	1e-04

>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147	Back information, alignment and structure


class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  122 bits (307), Expect = 1e-34
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 80  ISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMD 139
           +  TC  T    LC+ +LL+   S T     L  I  +      ++A    S + +    
Sbjct: 4   VETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPP 63

Query: 140 PHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGF 199
              +    +C       + A      ++  L  GD          +  +  +   C E F
Sbjct: 64  AAWKGPLKNCAFSYKVILTASLPE--AIEALTKGDPK---FAEDGMVGSSGDAQECEEYF 118

Query: 200 EDLNGPVKDQVSDKLKDLSELVSNCLAI 227
           +    P     S     + EL     AI
Sbjct: 119 KGSKSP----FSALNIAVHELSDVGRAI 142

PyMOL of d2cj4a1

>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149	Back information, alignment and structure

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319	Back information, alignment and structure

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342	Back information, alignment and structure

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		375
d2cj4a1		147	Invertase inhibitor {Common tobacco (Nicotiana tab	99.96
d1x91a_		149	Pectin methylesterase inhibitor 1, PMEI1 {Thale cr	99.96
d1gq8a_		319	Pectin methylesterase PemA {Carrot (Daucus carota)	99.9
d1qjva_		342	Pectin methylesterase PemA {Erwinia chrysanthemi [	99.68
d1ru4a_		400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.87
d1ofla_		481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	97.32
d1bhea_		376	Polygalacturonase {Erwinia carotovora, subsp. caro	87.94

>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.96  E-value=1.5e-29  Score=217.44  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=133.5

Q ss_pred             hHHHcccCCCCChhchHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHH
Q 017225           78 QAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSV  157 (375)
Q Consensus        78 ~~V~~~C~~T~yp~~C~ssLs~~p~s~~~dp~~L~~~ai~~a~~~~~~a~~~~~~l~~~~~d~~~k~AL~dC~ely~~Ai  157 (375)
                      +.|+.+|++|+||++|+++|.++|++..+||++|+.++++++++++..+...+..+.....+++.+.||++|.|+|++++
T Consensus         2 ~lI~~~C~~T~~~~~C~~sL~~~p~s~~ad~~~la~~av~~a~~~a~~~~~~i~~l~~~~~~~~~~~al~~C~e~y~~av   81 (147)
T d2cj4a1           2 NLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSYKVIL   81 (147)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCcHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999988788999999999999999999999999998876689999999999999999999


Q ss_pred             H-HHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhchhHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHhcC
Q 017225          158 D-ALSRSLGSVLLLPGGDINKREDVLTWLSAALTNHDTCSEGFEDLNGPVKDQVSDKLKDLSELVSNCLAIFSAG  231 (375)
Q Consensus       158 d-~L~~s~~~L~~~~~~~~~~~~Dl~TWLSAAlT~q~TC~DGF~~~~~~v~~~l~~~~~~~~~L~SNaLAIv~~l  231 (375)
                      + .|+.+...+.      .++++++++|||+|+++++||+|||.+    .+++|...++++.+|++|+|+|++.|
T Consensus        82 ~~~l~~a~~~l~------~~~~~~~~~~lsaa~~~~~tC~d~f~~----~~spl~~~~~~~~~l~~ial~i~~~L  146 (147)
T d2cj4a1          82 TASLPEAIEALT------KGDPKFAEDGMVGSSGDAQECEEYFKG----SKSPFSALNIAVHELSDVGRAIVRNL  146 (147)
T ss_dssp             HTHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHTTTT----SCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh------cCCHHHHHHHHHHHHhHHHHhhHHhCC----CCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            7 5899999887      378999999999999999999999975    34789999999999999999999865

PyMOL of d2cj4a1

>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}	Back information, alignment and structure

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}	Back information, alignment and structure

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}	Back information, alignment and structure