Citrus Sinensis ID: 017271

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MSISLRCPPSQALSSFSFQGRNSRLISTASDVHFNFRSSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDIDSTG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEcccccHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHcccEEcEEEcccHHHHHHHHHcccEEEcccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHcccEEEEcHHHHHHHHcccccccHHHHHHHccccccHHHHcccHHHHHccccccccccccHHHHHHHHHHHHcc
ccccccccccHHHEHHHHcccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEccccHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHcccHHHHHHHHHHHHHHHHHccccHHHEEEEEEccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEEcHHHHHHHHHcccccccccccccccccccEEHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEEccccccc
msislrcppsqalssfsfqgrnsrlistasdvhfnfrssfphirasssssssldaglsteldavssfseivpdtvvfddferfpptaatvssslllgicslpdtiFRNAVDMALAdssccelenseLRLSCFFNKALVNVGgdlakmvpgrvsteVDARLAYDTHGIIRKVHDLLKlyseidvpperllfkipstwqgIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRdwarnhsgdpeiddalkrgedpalSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLkesaispdekysfvrrlspqsaamyNFTEEevcvfsnfpfihcpsssvlfcetdidstg
msislrcppsqALSSFSFQGRNSRLISTASDVHFNFRSSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDIDSTG
MSISLRCPPSQALSSFSFQGRNSRLISTASDVHFNFRSSFPHIRAsssssssLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFaqaaaaaqagaSVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDIDSTG
***************************************************************VSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARN*****************ALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAI****KYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCET******
**************************************************************AVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCC******LRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAI*****YSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDID***
*************SSFSFQGRNSRLISTASDVHFNFRSSFPH*****************ELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDIDSTG
****LRCPPSQALSSFSFQGRNSRLISTASDVHFNFRS*****************G*STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDI****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSISLRCPPSQALSSFSFQGRNSRLISTASDVHFNFRSSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEEVCVFSNFPFIHCPSSSVLFCETDIDSTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
B0UV30317 Transaldolase OS=Haemophi yes no 0.708 0.835 0.382 5e-47
Q0I1U0317 Transaldolase OS=Haemophi yes no 0.708 0.835 0.382 6e-47
Q65PZ8317 Transaldolase OS=Mannheim yes no 0.727 0.858 0.358 6e-46
A6VLW0317 Transaldolase OS=Actinoba yes no 0.671 0.791 0.390 2e-45
A5UIP9317 Transaldolase OS=Haemophi yes no 0.703 0.829 0.373 3e-45
P45055317 Transaldolase OS=Haemophi yes no 0.703 0.829 0.369 4e-45
A5UCY0317 Transaldolase OS=Haemophi yes no 0.703 0.829 0.369 7e-45
Q9CKL0317 Transaldolase A OS=Pasteu yes no 0.705 0.832 0.367 9e-45
A1S414317 Transaldolase OS=Shewanel yes no 0.711 0.839 0.357 2e-44
Q4QLG9317 Transaldolase OS=Haemophi yes no 0.703 0.829 0.362 3e-44
>sp|B0UV30|TAL_HAES2 Transaldolase OS=Haemophilus somnus (strain 2336) GN=tal PE=3 SV=1 Back     alignment and function desciption
 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 104/272 (38%), Positives = 164/272 (60%), Gaps = 7/272 (2%)

Query: 57  LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALAD 116
           ++T+LDA+ + + +V DT   D  +++ P  AT + SL+L   SLP   +   +D A+A 
Sbjct: 1   MTTQLDALRNMTVVVADTGDIDAIKKYQPQDATTNPSLILSASSLPQ--YAPLIDEAIAY 58

Query: 117 SSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLK 176
           +     + ++ +L    +K  VN+G ++ K+VPGR+STEVDARL+YDT   + K   L+ 
Sbjct: 59  AKAKSADKTQ-QLIDAEDKLAVNIGLEILKIVPGRISTEVDARLSYDTQATVEKARKLIA 117

Query: 177 LYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQI 236
           LY+E  +  +R+L KI STWQGI A+ +LE EGI  +LT ++S AQA A A+AG  +I  
Sbjct: 118 LYNEAGISNDRILIKIASTWQGIRAAEILEKEGINCNLTLLFSKAQARACAEAGVYLISP 177

Query: 237 FVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL 296
           FVGR+ DW + +S   E   A    EDP +  V+K YNY  +YG+ + +M A+ RN  ++
Sbjct: 178 FVGRILDWYKANSDKKEYAPA----EDPGVISVTKIYNYYKQYGYNTVVMGASFRNVGEI 233

Query: 297 FSLLGVDYIIAPLKVLQSLKESAISPDEKYSF 328
             L G D +     +L+ L+E++ +   K +F
Sbjct: 234 TELAGCDRLTIAPALLKELQENSTALVRKLAF 265
Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
Haemophilus somnus (strain 2336) (taxid: 228400)
EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|Q0I1U0|TAL_HAES1 Transaldolase OS=Haemophilus somnus (strain 129Pt) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|Q65PZ8|TAL_MANSM Transaldolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|A6VLW0|TAL_ACTSZ Transaldolase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|A5UIP9|TAL_HAEIG Transaldolase OS=Haemophilus influenzae (strain PittGG) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|P45055|TAL_HAEIN Transaldolase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tal PE=3 SV=2 Back     alignment and function description
>sp|A5UCY0|TAL_HAEIE Transaldolase OS=Haemophilus influenzae (strain PittEE) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|Q9CKL0|TALA_PASMU Transaldolase A OS=Pasteurella multocida (strain Pm70) GN=talA PE=3 SV=1 Back     alignment and function description
>sp|A1S414|TAL_SHEAM Transaldolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tal PE=3 SV=1 Back     alignment and function description
>sp|Q4QLG9|TAL_HAEI8 Transaldolase OS=Haemophilus influenzae (strain 86-028NP) GN=tal PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
359496003396 PREDICTED: transaldolase-like [Vitis vin 0.860 0.813 0.832 1e-148
224125152399 predicted protein [Populus trichocarpa] 0.828 0.776 0.853 1e-147
359474335396 PREDICTED: transaldolase isoform 1 [Viti 0.879 0.830 0.817 1e-147
356514222398 PREDICTED: transaldolase-like [Glycine m 0.922 0.866 0.771 1e-146
255647773398 unknown [Glycine max] 0.922 0.866 0.769 1e-145
449459710405 PREDICTED: transaldolase-like [Cucumis s 0.828 0.765 0.851 1e-144
359474339414 PREDICTED: transaldolase isoform 3 [Viti 0.879 0.794 0.775 1e-143
295687233395 transaldolase [Gossypium hirsutum] 0.874 0.827 0.837 1e-142
359474337423 PREDICTED: transaldolase isoform 2 [Viti 0.879 0.777 0.755 1e-142
22497331375 transaldolase-like protein [Arabidopsis 0.943 0.941 0.739 1e-141
>gi|359496003|ref|XP_002266734.2| PREDICTED: transaldolase-like [Vitis vinifera] gi|298204833|emb|CBI25778.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/322 (83%), Positives = 291/322 (90%)

Query: 34  FNFRSSFPHIRASSSSSSSLDAGLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSS 93
            +F+ SFP IRAS++ SSSLD GLSTE DAVS  SEIVPDTV+FDDFERFPPTAATVSSS
Sbjct: 36  LSFQRSFPQIRASANFSSSLDKGLSTEFDAVSDLSEIVPDTVIFDDFERFPPTAATVSSS 95

Query: 94  LLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVS 153
           LLLGICSLPDTIFR+AV+ ALADS C  LE+ + R+SCFFNKALV VG DL K+VPGRVS
Sbjct: 96  LLLGICSLPDTIFRSAVETALADSVCYGLESPDARMSCFFNKALVKVGSDLVKLVPGRVS 155

Query: 154 TEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTH 213
           TEVDARLAYDTHGIIRKVHDLL LY+EIDVPPERLLFKIPSTWQGIEASRLLESEGIQTH
Sbjct: 156 TEVDARLAYDTHGIIRKVHDLLTLYNEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTH 215

Query: 214 LTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAY 273
           LTFVYSF QAAAAAQAGASVIQIFVGR+RDWARNHSGDPEI+ ALKRGEDP L+LV+KAY
Sbjct: 216 LTFVYSFCQAAAAAQAGASVIQIFVGRVRDWARNHSGDPEIEAALKRGEDPGLALVTKAY 275

Query: 274 NYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLS 333
           NYIHK+G+KSKLMAAAVRNKQDLFSLLGVDYIIAPLKVL+SLKES  SPDEKYSFVRRLS
Sbjct: 276 NYIHKHGYKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLESLKESITSPDEKYSFVRRLS 335

Query: 334 PQSAAMYNFTEEEVCVFSNFPF 355
           P SAA Y+F+EEE+  +    F
Sbjct: 336 PNSAASYSFSEEELVKWDQLNF 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125152|ref|XP_002329906.1| predicted protein [Populus trichocarpa] gi|222871143|gb|EEF08274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474335|ref|XP_003631434.1| PREDICTED: transaldolase isoform 1 [Vitis vinifera] gi|297741155|emb|CBI31886.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356514222|ref|XP_003525805.1| PREDICTED: transaldolase-like [Glycine max] Back     alignment and taxonomy information
>gi|255647773|gb|ACU24347.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449459710|ref|XP_004147589.1| PREDICTED: transaldolase-like [Cucumis sativus] gi|449521804|ref|XP_004167919.1| PREDICTED: transaldolase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474339|ref|XP_003631436.1| PREDICTED: transaldolase isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|295687233|gb|ADG27842.1| transaldolase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|359474337|ref|XP_003631435.1| PREDICTED: transaldolase isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22497331|gb|AAL65634.1| transaldolase-like protein [Arabidopsis thaliana] gi|22497334|gb|AAL65636.1| transaldolase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
DICTYBASE|DDB_G0280909321 tal "transaldolase" [Dictyoste 0.687 0.800 0.337 1.5e-37
TIGR_CMR|SO_3546318 SO_3546 "transaldolase" [Shewa 0.689 0.811 0.343 4.9e-37
SGD|S000003275333 NQM1 "Transaldolase of unknown 0.649 0.729 0.341 1.3e-36
UNIPROTKB|Q2TBL6337 TALDO1 "Transaldolase" [Bos ta 0.689 0.765 0.333 2.1e-36
UNIPROTKB|G5E5C8337 TALDO1 "Transaldolase" [Bos ta 0.689 0.765 0.333 2.7e-36
UNIPROTKB|Q9KLW8316 tal "Transaldolase" [Vibrio ch 0.649 0.768 0.338 4.4e-36
TIGR_CMR|VC_A0623316 VC_A0623 "transaldolase B" [Vi 0.649 0.768 0.338 4.4e-36
SGD|S000004346335 TAL1 "Transaldolase" [Saccharo 0.692 0.773 0.350 4.4e-36
MGI|MGI:1274789337 Taldo1 "transaldolase 1" [Mus 0.692 0.768 0.327 5.7e-36
RGD|620674337 Taldo1 "transaldolase 1" [Ratt 0.692 0.768 0.319 5.7e-36
DICTYBASE|DDB_G0280909 tal "transaldolase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 90/267 (33%), Positives = 146/267 (54%)

Query:    57 LSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPD--TIFRNAVDMAL 114
             +S  L+ +  ++ +V DT  FD   ++    +T + SL+    S P   ++  +A+    
Sbjct:     1 MSNALEELKKYTTVVADTADFDVLSKYGSQDSTTNPSLVFQAASDPKYKSLIDDAIKYVN 60

Query:   115 ADSSCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDL 174
             A S   E E    +LS   +K  VN G ++ K+VPGRVSTEVDARL+YD    ++K  +L
Sbjct:    61 AKSGLSEKE----KLSLAIDKLFVNFGVEILKIVPGRVSTEVDARLSYDIDANVKKGREL 116

Query:   175 LKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFXXXXXXXXXXXSVI 234
             + LY E  +  ER+L K+ STW+GIEA+++LE EGI  +LT ++S            ++I
Sbjct:   117 IALYKEAGIDKERVLIKLASTWEGIEAAKILEKEGIHCNLTLLFSLIQAAACAEAQVTLI 176

Query:   235 QIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQ 294
               FVGR+ D+ ++  G        +  +DP +  V + Y+Y  K+G+K+ +M A+ RNK+
Sbjct:   177 SPFVGRITDFYKSKQGVA----GFEASKDPGVISVQQIYSYFKKHGYKTSVMGASFRNKE 232

Query:   295 DLFSLLGVDYIIAPLKVLQSLKESAIS 321
                 L G D +     +L+ LK +  S
Sbjct:   233 QTIELAGCDLLTISPNLLEELKNADAS 259
GO:0006098 "pentose-phosphate shunt" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004801 "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0016740 "transferase activity" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA
TIGR_CMR|SO_3546 SO_3546 "transaldolase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
SGD|S000003275 NQM1 "Transaldolase of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBL6 TALDO1 "Transaldolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G5E5C8 TALDO1 "Transaldolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLW8 tal "Transaldolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0623 VC_A0623 "transaldolase B" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
SGD|S000004346 TAL1 "Transaldolase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1274789 Taldo1 "transaldolase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620674 Taldo1 "transaldolase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.2.1.20.824
3rd Layer2.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.127.161.1
hypothetical protein (339 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VIII.2574.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (569 aa)
•  • •• 0.988
estExt_Genewise1_v1.C_LG_XIV0740
transketolase (EC-2.2.1.1) (635 aa)
•  •••• 0.982
eugene3.00021349
SubName- Full=Putative uncharacterized protein; (745 aa)
•  • •• 0.980
fgenesh4_pm.C_LG_X000906
transketolase (EC-2.2.1.1) (656 aa)
•  • •• 0.978
gw1.II.3030.1
glucose-6-phosphate isomerase (EC-5.3.1.9) (542 aa)
•    •• 0.960
gw1.263.13.1
6-phosphofructokinase (EC-2.7.1.11) (443 aa)
     •• 0.911
grail3.0003059501
fructose-bisphosphatase (EC-3.1.3.11) (335 aa)
     •• 0.910
gw1.VI.935.1
6-phosphofructokinase (EC-2.7.1.11) (467 aa)
     •• 0.910
estExt_Genewise1_v1.C_LG_V0287
fructose-bisphosphatase (EC-3.1.3.11) (342 aa)
     •• 0.910
gw1.VII.4031.1
6-phosphofructokinase (EC-2.7.1.11) (473 aa)
     •• 0.907

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
cd00957313 cd00957, Transaldolase_TalAB, Transaldolases inclu 1e-129
TIGR00874317 TIGR00874, talAB, transaldolase 2e-66
PTZ00411333 PTZ00411, PTZ00411, transaldolase-like protein; Pr 3e-66
PRK05269318 PRK05269, PRK05269, transaldolase B; Provisional 5e-65
PRK12346316 PRK12346, PRK12346, transaldolase A; Provisional 6e-58
PRK12309391 PRK12309, PRK12309, transaldolase/EF-hand domain-c 9e-56
pfam00923244 pfam00923, Transaldolase, Transaldolase 2e-51
cd00439252 cd00439, Transaldolase, Transaldolase 3e-38
COG0176239 COG0176, MipB, Transaldolase [Carbohydrate transpo 6e-38
cd00956211 cd00956, Transaldolase_FSA, Transaldolase-like fru 1e-21
PRK01362214 PRK01362, PRK01362, putative translaldolase; Provi 7e-20
TIGR00875213 TIGR00875, fsa_talC_mipB, fructose-6-phosphate ald 2e-18
cd00955338 cd00955, Transaldolase_like, Transaldolase-like pr 4e-14
PRK03343368 PRK03343, PRK03343, transaldolase; Validated 1e-12
PRK03903274 PRK03903, PRK03903, transaldolase; Provisional 1e-09
PRK09533 948 PRK09533, PRK09533, bifunctional transaldolase/pho 4e-08
PRK12653220 PRK12653, PRK12653, fructose-6-phosphate aldolase; 7e-08
TIGR00876350 TIGR00876, tal_mycobact, transaldolase, mycobacter 1e-07
PRK12655220 PRK12655, PRK12655, fructose-6-phosphate aldolase; 9e-06
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA and TalB Back     alignment and domain information 
 Score =  373 bits (960), Expect = e-129
 Identities = 117/288 (40%), Positives = 170/288 (59%), Gaps = 9/288 (3%)

Query: 59  TELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSS 118
            +LD +  F+ IV DT  F+  ++F P  AT + SL+L    LP   +   VD A+A + 
Sbjct: 1   NQLDQLKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLP--EYNKLVDEAIAYAK 58

Query: 119 CCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLY 178
             +  + E ++S   +K LVN G ++ K++PGRVSTEVDARL++DT+  I K   L+KLY
Sbjct: 59  K-KGGSDEDQISNALDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIAKARKLIKLY 117

Query: 179 SEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFV 238
            E  +  ER+L KI +TW+GI+A++ LE EGI  +LT ++SFAQA A A+AG ++I  FV
Sbjct: 118 EEAGIDKERILIKIAATWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFV 177

Query: 239 GRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLFS 298
           GR+ DW + HSGD     A    EDP ++ V K YNY  K+G+K+K+M A+ RN   + +
Sbjct: 178 GRILDWYKKHSGDK----AYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILA 233

Query: 299 LLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEE 346
           L G DY+     +L+ LK S    + K       S       NF +E 
Sbjct: 234 LAGCDYLTISPALLEELKNSTAKVERKLD--PAASKALDIHPNFLDES 279

Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution. Length = 313
>gnl|CDD|162081 TIGR00874, talAB, transaldolase Back     alignment and domain information
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|235381 PRK05269, PRK05269, transaldolase B; Provisional Back     alignment and domain information
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional Back     alignment and domain information
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase Back     alignment and domain information
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase Back     alignment and domain information
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea Back     alignment and domain information
>gnl|CDD|234947 PRK01362, PRK01362, putative translaldolase; Provisional Back     alignment and domain information
>gnl|CDD|129953 TIGR00875, fsa_talC_mipB, fructose-6-phosphate aldolase, TalC/MipB family Back     alignment and domain information
>gnl|CDD|188642 cd00955, Transaldolase_like, Transaldolase-like proteins from plants and bacteria Back     alignment and domain information
>gnl|CDD|235117 PRK03343, PRK03343, transaldolase; Validated Back     alignment and domain information
>gnl|CDD|235171 PRK03903, PRK03903, transaldolase; Provisional Back     alignment and domain information
>gnl|CDD|236551 PRK09533, PRK09533, bifunctional transaldolase/phosoglucose isomerase; Validated Back     alignment and domain information
>gnl|CDD|183653 PRK12653, PRK12653, fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information
>gnl|CDD|129954 TIGR00876, tal_mycobact, transaldolase, mycobacterial type Back     alignment and domain information
>gnl|CDD|183655 PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
KOG2772337 consensus Transaldolase [Carbohydrate transport an 100.0
PTZ00411333 transaldolase-like protein; Provisional 100.0
PRK12346316 transaldolase A; Provisional 100.0
TIGR00874317 talAB transaldolase. This family includes the majo 100.0
cd00957313 Transaldolase_TalAB Transaldolases including both 100.0
PRK05269318 transaldolase B; Provisional 100.0
PRK12309391 transaldolase/EF-hand domain-containing protein; P 100.0
cd00439252 Transaldolase Transaldolase. Enzymes found in the 100.0
COG0176239 MipB Transaldolase [Carbohydrate transport and met 100.0
PRK03343368 transaldolase; Validated 100.0
PF00923287 Transaldolase: Transaldolase; InterPro: IPR001585 100.0
cd00955338 Transaldolase_like Transaldolase-like proteins fro 100.0
TIGR00875213 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ 100.0
PRK01362214 putative translaldolase; Provisional 100.0
PRK12655220 fructose-6-phosphate aldolase; Reviewed 100.0
PRK12653220 fructose-6-phosphate aldolase; Reviewed 100.0
PRK12656222 fructose-6-phosphate aldolase; Reviewed 100.0
TIGR00876350 tal_mycobact transaldolase, mycobacterial type. Th 100.0
cd00956211 Transaldolase_FSA Transaldolase-like fructose-6-ph 100.0
PRK12376236 putative translaldolase; Provisional 100.0
TIGR02134236 transald_staph transaldolase. This small family of 100.0
PRK09533 948 bifunctional transaldolase/phosoglucose isomerase; 100.0
PRK03903274 transaldolase; Provisional 100.0
CHL00162267 thiG thiamin biosynthesis protein G; Validated 93.66
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 93.12
PRK00208250 thiG thiazole synthase; Reviewed 91.88
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 91.57
PF05690247 ThiG: Thiazole biosynthesis protein ThiG; InterPro 91.29
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 91.07
PRK06806281 fructose-bisphosphate aldolase; Provisional 90.33
PF03740239 PdxJ: Pyridoxal phosphate biosynthesis protein Pdx 86.88
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 84.38
COG2022262 ThiG Uncharacterized enzyme of thiazole biosynthes 83.99
COG5016472 Pyruvate/oxaloacetate carboxyltransferase [Energy 83.54
PRK11840326 bifunctional sulfur carrier protein/thiazole synth 81.93
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.72
PRK13398266 3-deoxy-7-phosphoheptulonate synthase; Provisional 81.29
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.27
cd03315265 MLE_like Muconate lactonizing enzyme (MLE) like su 81.02
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 80.99
PRK05265239 pyridoxine 5'-phosphate synthase; Provisional 80.99
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 80.74
cd03321355 mandelate_racemase Mandelate racemase (MR) catalyz 80.64
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 80.21
>KOG2772 consensus Transaldolase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-77  Score=570.33  Aligned_cols=287  Identities=38%  Similarity=0.576  Sum_probs=265.4

Q ss_pred             cCHHHHHhcc-CceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhh
Q 017271           58 STELDAVSSF-SEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKA  136 (374)
Q Consensus        58 ~t~Ld~Lk~~-t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~  136 (374)
                      .+.|++|++. |++++|++||..|.+|+|+|+|||||||+++.+.|.  |..+++.+++|++..+. ....++..++++.
T Consensus        13 ~ssL~qLk~~~t~vvadtgDf~~i~~~~p~daTtnpSlil~as~~~~--y~~~~~~aveygk~~~~-~~~e~v~~aidr~   89 (337)
T KOG2772|consen   13 RSSLEQLKASGTVVVADTGDFLAIIEYKPQDATTNPSLILAASKMPA--YAELFDTAVEYGKKHGS-SYWEQVENAIDRA   89 (337)
T ss_pred             HhhHHHHHhccCeeecCccchHHHHhcCCCCCccCHHHHHhhhccHh--HHHHHHHHHHHHHHhcc-chHHHHHHHHHHH
Confidence            4779999999 889999999999999999999999999999999997  99999999999997753 5667888999999


Q ss_pred             HHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEee
Q 017271          137 LVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTF  216 (374)
Q Consensus       137 ~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~Tl  216 (374)
                      +++||.+|++++|||||+||||||++|+++||++|+.|+++|++.||+++||+||||+||+||+|+|+|+++||+||+||
T Consensus        90 ~v~fg~dilk~vpGrVStEVdaRLsfDTq~tvekA~~Likly~~~gv~k~rvliKI~sTwegI~Aar~le~~GIhcnmTl  169 (337)
T KOG2772|consen   90 CVLFGTDILKGVPGRVSTEVDARLSFDTQGTVEKARHLIKLYNEEGVPKERVLIKIASTWEGIQAARELEEEGIHCNMTL  169 (337)
T ss_pred             HHHhChhhhhcCCCeeeeeecccccccchhHHHHHHHHHHHHHhcCCChheEEEecccccchhHHHHHHHhcCceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcH
Q 017271          217 VYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDL  296 (374)
Q Consensus       217 IFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i  296 (374)
                      +||+.||++|++||+++||||||||+||++++.+++    .++.++|||+.++++||+||++|||+|+||+|||||.+++
T Consensus       170 lFSfaQAVacAea~vtliSpFVgRi~dw~~~~t~~k----a~~~~~dpgV~sv~~iYnyykKfgykt~Vm~asfrn~~ei  245 (337)
T KOG2772|consen  170 LFSFAQAVACAEAGVTLISPFVGRILDWYKANTGQK----AYKAREDPGVASVKKIYNYYKKFGYKTLVMAASFRNTGEI  245 (337)
T ss_pred             hHHHHHHHHHHhcCCeeehhHHHHHHHHHHhccCch----hccccCCchHHHHHHHHHHHHHhhHHHHHHHHHhhchhhh
Confidence            999999999999999999999999999999988753    5667789999999999999999999999999999999999


Q ss_pred             HHhhCCcEecccHHHHHHHHhCCCCC-cchhhhcccCChhhhccCCCCHHHhcccccc
Q 017271          297 FSLLGVDYIIAPLKVLQSLKESAISP-DEKYSFVRRLSPQSAAMYNFTEEEVCVFSNF  353 (374)
Q Consensus       297 ~~laG~D~lTipp~ll~~L~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  353 (374)
                      ..++|||++|+||.+|++|.+...++ .+.+++.+++.+.  .+.++++||.-+|+..
T Consensus       246 k~lag~D~ltisp~ll~~l~~s~~~~~~~l~a~~ak~~~~--~k~~y~de~~fr~~ln  301 (337)
T KOG2772|consen  246 KNLAGVDYLTISPALLPQLVNSTEDQPLELSASHAKLKDL--EKVSYSDEEGFRWDLN  301 (337)
T ss_pred             hhcccCceeeecHHHHHHHhhCCCccchhhhhhhhhccCc--ccccccchhhhHhhhh
Confidence            99999999999999999998876653 5667777777665  4455577777788653

>PTZ00411 transaldolase-like protein; Provisional Back     alignment and domain information
>PRK12346 transaldolase A; Provisional Back     alignment and domain information
>TIGR00874 talAB transaldolase Back     alignment and domain information
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB Back     alignment and domain information
>PRK05269 transaldolase B; Provisional Back     alignment and domain information
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional Back     alignment and domain information
>cd00439 Transaldolase Transaldolase Back     alignment and domain information
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03343 transaldolase; Validated Back     alignment and domain information
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2 Back     alignment and domain information
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria Back     alignment and domain information
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family Back     alignment and domain information
>PRK01362 putative translaldolase; Provisional Back     alignment and domain information
>PRK12655 fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information
>PRK12653 fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information
>PRK12656 fructose-6-phosphate aldolase; Reviewed Back     alignment and domain information
>TIGR00876 tal_mycobact transaldolase, mycobacterial type Back     alignment and domain information
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases Back     alignment and domain information
>PRK12376 putative translaldolase; Provisional Back     alignment and domain information
>TIGR02134 transald_staph transaldolase Back     alignment and domain information
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated Back     alignment and domain information
>PRK03903 transaldolase; Provisional Back     alignment and domain information
>CHL00162 thiG thiamin biosynthesis protein G; Validated Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>PRK06806 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1i2n_A316 Crystal Structure Of Escherichia Coli Transaldolase 1e-38
3cwn_A337 Escherichia Coli Transaldolase B Mutant F178y Lengt 1e-38
1onr_A316 Structure Of Transaldolase B Length = 316 1e-38
1i2r_A316 Crystal Structure Of Escherichia Coli Transaldolase 1e-38
1ucw_A317 Complex Of Transaldolase With The Reduced Schiff-Ba 3e-38
1i2q_A316 Crystal Structure Of Escherichia Coli Transaldolase 4e-38
3m16_A329 Structure Of A Transaldolase From Oleispira Antarct 5e-38
1i2o_A316 Crystal Structure Of Escherichia Coli Transaldolase 5e-38
3hjz_A334 The Structure Of An Aldolase From Prochlorococcus M 6e-38
3kof_A337 Crystal Structure Of The Double Mutant F178yR181E O 6e-38
1i2p_A316 Crystal Structure Of Escherichia Coli Transaldolase 8e-38
2e1d_A331 Crystal Structure Of Mouse Transaldolase Length = 3 6e-37
2cwn_A332 Crystal Structure Of Mouse Transaldolase Length = 3 1e-36
3cq0_A339 Crystal Structure Of Tal2_yeast Length = 339 4e-36
1f05_A337 Crystal Structure Of Human Transaldolase Length = 3 2e-35
3tk7_A345 2.0 Angstrom Resolution Crystal Structure Of Transa 4e-23
3igx_A324 1.85 Angstrom Resolution Crystal Structure Of Trans 2e-22
3te9_A345 1.8 Angstrom Resolution Crystal Structure Of K135m 2e-22
1vpx_A230 Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm 3e-11
3r8r_A212 Transaldolase From Bacillus Subtilis Length = 212 9e-07
3r5e_A360 Transaldolase From Corynebacterium Glutamicum Lengt 5e-04
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B Mutant N35a Length = 316 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 158/289 (54%), Gaps = 10/289 (3%)
Query: 58  STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS 117
           + +L ++  ++ +V DT      + + P  AT + SL+L    +P+  +R  +D A+A +
Sbjct: 1   TDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTAPSLILNAAQIPE--YRKLIDDAVAWA 58
Query: 118 SCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKL 177
                + ++ ++    +K  VN+G ++ K+VPGR+STEVDARL+YDT   I K   L+KL
Sbjct: 59  KQQSNDRAQ-QIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKL 117
Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFXXXXXXXXXXXSVIQIF 237
           Y++  +  +R+L K+ STWQGI A+  LE EGI  +LT ++SF            +I  F
Sbjct: 118 YNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF 177
Query: 238 VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297
           VGR+ DW + ++   E   A    EDP +  VS+ Y Y  ++G+++ +M A+ RN  ++ 
Sbjct: 178 VGRILDWYKANTDKKEYAPA----EDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEIL 233
Query: 298 SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEE 346
            L G D +     +L+ L ES  + + K S+   +  + A     TE E
Sbjct: 234 ELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPA---RITESE 279
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y Length = 337 Back     alignment and structure
>pdb|1ONR|A Chain A, Structure Of Transaldolase B Length = 316 Back     alignment and structure
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B Mutant S176a Length = 316 Back     alignment and structure
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base Intermediate Length = 317 Back     alignment and structure
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B Mutant T156a Length = 316 Back     alignment and structure
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica Length = 329 Back     alignment and structure
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B Mutant E96a Length = 316 Back     alignment and structure
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus Length = 334 Back     alignment and structure
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF E.COLI Transaldolase B Length = 337 Back     alignment and structure
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B Mutant D17a Length = 316 Back     alignment and structure
>pdb|2E1D|A Chain A, Crystal Structure Of Mouse Transaldolase Length = 331 Back     alignment and structure
>pdb|2CWN|A Chain A, Crystal Structure Of Mouse Transaldolase Length = 332 Back     alignment and structure
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast Length = 339 Back     alignment and structure
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase Length = 337 Back     alignment and structure
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of Transaldolase B (Tala) From Francisella Tularensis In Covalent Complex With Fructose 6- Phosphate Length = 345 Back     alignment and structure
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Transaldolase B (Tala) From Francisella Tularensis. Length = 324 Back     alignment and structure
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant Of Transaldolase B (Tala) From Francisella Tularensis In Complex With Fructose 6-Phosphate Length = 345 Back     alignment and structure
>pdb|1VPX|A Chain A, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295) From Thermotoga Maritima At 2.40 A Resolution Length = 230 Back     alignment and structure
>pdb|3R8R|A Chain A, Transaldolase From Bacillus Subtilis Length = 212 Back     alignment and structure
>pdb|3R5E|A Chain A, Transaldolase From Corynebacterium Glutamicum Length = 360 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3hjz_A334 Transaldolase B; parachlorococcus, marine, cyanoba 1e-81
3cwn_A337 Transaldolase B; directed evolution, cytoplasm, pe 4e-81
3m16_A329 Transaldolase; dimer, molecular replac swiss-model 2e-80
3tkf_A345 Transaldolase; structural genomics, center for str 6e-80
2e1d_A331 Transaldolase; pentose phosphate pathway, structur 8e-79
3cq0_A339 Putative transaldolase YGR043C; alpha/beta barrel, 4e-78
3clm_A352 Transaldolase; YP_208650.1, structural genomics, j 9e-30
3r5e_A360 Transaldolase; pentose phosphate pathway, TIM barr 2e-29
1vpx_A230 Protein (transaldolase (EC 2.2.1.2)); TM0295, stru 6e-28
3r8r_A212 Transaldolase; pentose phosphate pathway, schiff b 7e-28
3s1x_A223 Probable transaldolase; alpha-beta barrel, conform 9e-28
1wx0_A223 Transaldolase; structural genomics, riken structur 3e-27
1l6w_A220 Fructose-6-phosphate aldolase 1; alpha-beta barrel 5e-23
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} Length = 334 Back     alignment and structure
 Score =  251 bits (643), Expect = 1e-81
 Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 18/297 (6%)

Query: 56  GLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALA 115
           G+ + L+ +SS + +V DT   D  ++F P  AT + SL+L     PD  +   +D A+ 
Sbjct: 1   GMKSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPD--YVKLIDKAIE 58

Query: 116 DSSCCELE--NSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHD 173
            S        +    +    ++  V  G ++ K++ GRVSTEVDARL++DT   ++K   
Sbjct: 59  SSENTLPNGFSEIELIKETVDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVKKARK 118

Query: 174 LLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASV 233
           L+ LY    +  ER+L KI +TW+GI+A+ +LE EGI+ +LT +++F QA   A A  ++
Sbjct: 119 LINLYKNFGIEKERILIKIAATWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITL 178

Query: 234 IQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNK 293
           I  FVGR+ DW +  +G      A    EDP +  V++ Y Y  + G K+++M A+ RN 
Sbjct: 179 ISPFVGRILDWHKAKTGKTSFIGA----EDPGVISVTQIYKYFKEKGFKTEVMGASFRNL 234

Query: 294 QDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAM----YNFTEEE 346
            ++  L G D +    K L+ LK        K   +R+L   +       Y F E++
Sbjct: 235 DEIKELAGCDLLTIAPKFLEELKRE------KGVLIRKLDASTKINNSIDYKFEEKD 285
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A Length = 337 Back     alignment and structure
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} Length = 329 Back     alignment and structure
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A Length = 345 Back     alignment and structure
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A Length = 331 Back     alignment and structure
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} Length = 339 Back     alignment and structure
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae} Length = 352 Back     alignment and structure
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum} Length = 360 Back     alignment and structure
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 Length = 230 Back     alignment and structure
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} Length = 212 Back     alignment and structure
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* Length = 223 Back     alignment and structure
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 Length = 223 Back     alignment and structure
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
3hjz_A334 Transaldolase B; parachlorococcus, marine, cyanoba 100.0
3m16_A329 Transaldolase; dimer, molecular replac swiss-model 100.0
3tkf_A345 Transaldolase; structural genomics, center for str 100.0
2e1d_A331 Transaldolase; pentose phosphate pathway, structur 100.0
3cq0_A339 Putative transaldolase YGR043C; alpha/beta barrel, 100.0
3cwn_A337 Transaldolase B; directed evolution, cytoplasm, pe 100.0
3clm_A352 Transaldolase; YP_208650.1, structural genomics, j 100.0
3r8r_A212 Transaldolase; pentose phosphate pathway, schiff b 100.0
1wx0_A223 Transaldolase; structural genomics, riken structur 100.0
3s1x_A223 Probable transaldolase; alpha-beta barrel, conform 100.0
1l6w_A220 Fructose-6-phosphate aldolase 1; alpha-beta barrel 100.0
1vpx_A230 Protein (transaldolase (EC 2.2.1.2)); TM0295, stru 100.0
3r5e_A360 Transaldolase; pentose phosphate pathway, TIM barr 100.0
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 93.6
2p10_A286 MLL9387 protein; putative phosphonopyruvate hydrol 91.94
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 90.01
2htm_A268 Thiazole biosynthesis protein THIG; thiamin biosyn 86.13
3o6c_A260 PNP synthase, pyridoxine 5'-phosphate synthase; st 85.05
1m5w_A243 Pyridoxal phosphate biosynthetic protein PDXJ; TIM 84.37
3gk0_A278 PNP synthase, pyridoxine 5'-phosphate synthase; de 83.86
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 81.17
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str} Back     alignment and structure
Probab=100.00  E-value=4.4e-76  Score=579.63  Aligned_cols=279  Identities=34%  Similarity=0.602  Sum_probs=252.9

Q ss_pred             CccCHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhh---hhhh
Q 017271           56 GLSTELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELR---LSCF  132 (374)
Q Consensus        56 ~~~t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~---~a~~  132 (374)
                      ||+|+||+||++|+||+||||++.|++|+|+|+||||||++++.+.|.  |+++|++++.++++.+. ....+   +.++
T Consensus         1 ~m~~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTTNPsi~~~A~~~~~--Y~~li~~~~~~~~~~~~-~~~~~~~dv~~a   77 (334)
T 3hjz_A            1 GMKSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPD--YVKLIDKAIESSENTLP-NGFSEIELIKET   77 (334)
T ss_dssp             CCCCHHHHHHTTSEEEECCCSHHHHHHHCCSSEEECHHHHHHHTTSTT--THHHHHHHHHHHHHHSC-TTCCHHHHHHHH
T ss_pred             CCccHHHHHhhCeEEecCCCCHHHHHhcCCCCCCCCHHHHHHHhcChh--HHHHHHHHHHHhhhccc-cHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999997  99999999999887643 22333   6778


Q ss_pred             hhhhHHHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCcee
Q 017271          133 FNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQT  212 (374)
Q Consensus       133 ~~~~~v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~v  212 (374)
                      +|+..+.||+++++++||+||+||||++++|+++||++|++|+++|++.||+++||+||||+||+||+|+++|+++||+|
T Consensus        78 ~D~l~v~~g~ei~~~v~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T~eGl~A~~~L~~~GI~~  157 (334)
T 3hjz_A           78 VDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAATWEGIKAAEILEKEGIKC  157 (334)
T ss_dssp             HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhhCCCCCcEEEEeCCCHHHHHHHHHHHHCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCC
Q 017271          213 HLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRN  292 (374)
Q Consensus       213 N~TlIFS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn  292 (374)
                      |+|||||+.||++|++||++|||||||||+||++++.+..    .+...+|||+.++++||+||++||++|+||||||||
T Consensus       158 N~TliFS~~Qa~~aa~AGa~~ISPFVgRi~D~~~~~~g~~----~~~~~~d~Gv~~v~~i~~~y~~~g~~T~vl~ASfRn  233 (334)
T 3hjz_A          158 NLTLLFNFCQAVTCANANITLISPFVGRILDWHKAKTGKT----SFIGAEDPGVISVTQIYKYFKEKGFKTEVMGASFRN  233 (334)
T ss_dssp             EEESCCSHHHHHHHHHTTCSEECCBHHHHHHHHHHHHCCC----CCCGGGCHHHHHHHHHHHHHHHHTCCCEEEEBCCSS
T ss_pred             EEEEeCCHHHHHHHHHcCCcEEEeeccHHHHHhhhccCCc----ccccccCcHHHHHHHHHHHHHHcCCCCEEEEecCCC
Confidence            9999999999999999999999999999999998765432    122335799999999999999999999999999999


Q ss_pred             hhcHHHhhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhhhccCC----CCHHHh
Q 017271          293 KQDLFSLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYN----FTEEEV  347 (374)
Q Consensus       293 ~~~i~~laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~  347 (374)
                      ++|+.+++|||++|+||++|++|.+...+      ++++|++..+....    ++|.++
T Consensus       234 ~~~v~~laG~d~~Tipp~ll~~L~~~~~~------~~~~L~~~~~~~~~~~~~~de~~f  286 (334)
T 3hjz_A          234 LDEIKELAGCDLLTIAPKFLEELKREKGV------LIRKLDASTKINNSIDYKFEEKDF  286 (334)
T ss_dssp             HHHHHHTTTCSEEEECHHHHHHHHHCCSC------CCCCCCCCCCCSCCCCCCCCHHHH
T ss_pred             HHHHHHHhCCCEEEcCHHHHHHHHhcCCC------cccccCccccccccccCcCCHHHH
Confidence            99999999999999999999999997665      46888887655433    455555
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1 Back     alignment and structure
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A Back     alignment and structure
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A Back     alignment and structure
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A Back     alignment and structure
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae} Back     alignment and structure
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} Back     alignment and structure
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 Back     alignment and structure
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* Back     alignment and structure
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 Back     alignment and structure
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 Back     alignment and structure
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Back     alignment and structure
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* Back     alignment and structure
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* Back     alignment and structure
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1onra_316 c.1.10.1 (A:) Transaldolase {Escherichia coli [Tax 1e-61
d2e1da1319 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musc 1e-56
d1wx0a1211 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate 8e-21
d1vpxa_218 c.1.10.1 (A:) Decameric fructose-6-phosphate aldol 7e-17
d1l6wa_220 c.1.10.1 (A:) Decameric fructose-6-phosphate aldol 6e-13
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} Length = 316 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Transaldolase
species: Escherichia coli [TaxId: 562]

 Score =  198 bits (505), Expect = 1e-61
 Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 10/289 (3%)

Query: 58  STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADS 117
           + +L ++  ++ +V DT      + + P  AT + SL+L    +P+  +R  +D A+A +
Sbjct: 1   TDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPE--YRKLIDDAVAWA 58

Query: 118 SCCELENSELRLSCFFNKALVNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKL 177
              +  +   ++    +K  VN+G ++ K+VPGR+STEVDARL+YDT   I K   L+KL
Sbjct: 59  KQ-QSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKL 117

Query: 178 YSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIF 237
           Y++  +  +R+L K+ STWQGI A+  LE EGI  +LT ++SFAQA A A+AG  +I  F
Sbjct: 118 YNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF 177

Query: 238 VGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF 297
           VGR+ DW + ++   E   A    EDP +  VS+ Y Y  ++G+++ +M A+ RN  ++ 
Sbjct: 178 VGRILDWYKANTDKKEYAPA----EDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEIL 233

Query: 298 SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQSAAMYNFTEEE 346
            L G D +     +L+ L ES  + + K S+   +  + A +   TE E
Sbjct: 234 ELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARI---TESE 279
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus) [TaxId: 10090]} Length = 319 Back     information, alignment and structure
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} Length = 211 Back     information, alignment and structure
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} Length = 218 Back     information, alignment and structure
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1onra_316 Transaldolase {Escherichia coli [TaxId: 562]} 100.0
d2e1da1319 Transaldolase {Mouse (Mus musculus) [TaxId: 10090] 100.0
d1wx0a1211 Decameric fructose-6-phosphate aldolase/transaldol 100.0
d1l6wa_220 Decameric fructose-6-phosphate aldolase/transaldol 100.0
d1vpxa_218 Decameric fructose-6-phosphate aldolase/transaldol 100.0
d1xm3a_251 Thiazole biosynthesis protein ThiG {Bacillus subti 89.18
d1wbha1213 KDPG aldolase {Escherichia coli [TaxId: 562]} 85.79
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Transaldolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.1e-74  Score=559.29  Aligned_cols=279  Identities=36%  Similarity=0.588  Sum_probs=253.9

Q ss_pred             cCHHHHHhccCceeccCcchhhhhccCCCCCccChHHHHHHhcCChHHHHHHHHHHHhhhhhccccChhhhhhhhhhhhH
Q 017271           58 STELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICSLPDTIFRNAVDMALADSSCCELENSELRLSCFFNKAL  137 (374)
Q Consensus        58 ~t~Ld~Lk~~t~IvaDt~d~~~i~~~~p~daTTNPsLi~~a~~~P~ti~~~aI~~ai~~~~~~~l~~~d~~~a~~~~~~~  137 (374)
                      +|+||+||++|+||+||+|++.|++|+|+|+|||||||++++++|.  |+++|++++.++++.+ .....++.+..++..
T Consensus         1 ~~~l~~l~~~t~vv~DT~d~~~I~~~~p~~~TTNPSLi~ka~~~~~--y~~li~~~i~~~~~~~-~~~~~~i~~~~d~l~   77 (316)
T d1onra_           1 TDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPE--YRKLIDDAVAWAKQQS-NDRAQQIVDATDKLA   77 (316)
T ss_dssp             CBHHHHHTTTSEEEEESSCHHHHHHHCCSEEECCHHHHHHHTTSGG--GHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred             CChHHHhhcCCEEECCCcCHHHHHhhCCCCccCCHHHHHHHhcCHH--HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999998  9999999999999875 366778889999999


Q ss_pred             HHHHHHHhcCCCCeEEEEecCCccCCHHHHHHHHHHHHHHhcCCCCCCCcEEEEecCChhHHHHHHHHHHcCceeEEeec
Q 017271          138 VNVGGDLAKMVPGRVSTEVDARLAYDTHGIIRKVHDLLKLYSEIDVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFV  217 (374)
Q Consensus       138 v~~g~eil~~v~G~VS~EVdp~la~D~e~~I~eA~~L~~l~~~~gv~~~nVlIKIPaT~eGi~A~~~L~~eGI~vN~TlI  217 (374)
                      +++|.++++.+||+||+||||++++|+++||++|++|+++|++.|++++||+||||+||+||+|+++|+++||+||+|||
T Consensus        78 v~~~~~i~~~v~G~VS~EVd~~l~~d~~~~i~~A~~l~~l~~~~~i~~~~i~IKIPaT~eGi~A~~~L~~~GI~vN~Tlv  157 (316)
T d1onra_          78 VNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLL  157 (316)
T ss_dssp             HHHHHHHHTTCSSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHccCCCceeEEeccCccCCHHHHHHHHHHHHHHHHhcCCCCcceeeecCCcHHHHHHHHHHHHcCCcccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCcEEEechhhhhhhhhcCCCCccchhhhccCCCcHHHHHHHHHHHHHHcCccHHHHHhccCChhcHH
Q 017271          218 YSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIDDALKRGEDPALSLVSKAYNYIHKYGHKSKLMAAAVRNKQDLF  297 (374)
Q Consensus       218 FS~~QA~aaa~AGas~ISpFVGRIdd~~~~~~~d~~~~~~~~~~~d~Gv~~v~~iy~~~k~~g~~T~vLaAS~Rn~~~i~  297 (374)
                      ||+.||++|++||++|||||||||+||++++.+...    .....++|+.++++||++|+++|++|+||+|||||.+++.
T Consensus       158 FS~~Qa~~aa~Aga~~iSpfVgRi~d~~~~~~~~~~----~~~~~~~Gv~~v~~i~~~~k~~g~~t~v~~AS~r~~~~v~  233 (316)
T d1onra_         158 FSFAQARACAEAGVFLISPFVGRILDWYKANTDKKE----YAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEIL  233 (316)
T ss_dssp             CSHHHHHHHHHTTCSEEEEBSHHHHHHHHHSSSCCC----CCGGGCHHHHHHHHHHHHHHHTTCCCEEEEBCCSSHHHHH
T ss_pred             ecHHHHHHHHHcCCeEEeeeecchhhhhhccccccc----ccccCCchHHHHHHHHHHHHHcCCCceeehhhccchhhHH
Confidence            999999999999999999999999999987654221    1123479999999999999999999999999999999999


Q ss_pred             HhhCCcEecccHHHHHHHHhCCCCCcchhhhcccCChhh---hccCCCCHHHhccc
Q 017271          298 SLLGVDYIIAPLKVLQSLKESAISPDEKYSFVRRLSPQS---AAMYNFTEEEVCVF  350 (374)
Q Consensus       298 ~laG~D~lTipp~ll~~L~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~  350 (374)
                      +++|||++|+||+++++|..++...      ++.|++..   .....++|+++ +|
T Consensus       234 ~laG~D~~Ti~p~~l~~l~~~~~~~------~~~l~~~~~~~~~~~~l~E~~F-r~  282 (316)
T d1onra_         234 ELAGCDRLTIAPALLKELAESEGAI------ERKLSYTGEVKARPARITESEF-LW  282 (316)
T ss_dssp             HTTTSSEEEECHHHHHHHHHCBSCC------CCCCCCCSCCCCCCCCCCHHHH-HH
T ss_pred             HHhcCCceecCHHHHHHHhhccCcc------cccCCccccccCCCCCCCHHHH-HH
Confidence            9999999999999999999987764      34454322   23456777777 45
>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure