Citrus Sinensis ID: 017291

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLCTSQVSQQSSL
ccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHccccccccHHHHHHHHHcccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccHHHHHHHcccccccEEEEHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccc
cHHHHHHHcHHHHHccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccHHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHcccccEccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccc
MAAEMALVkpiskfstiatttkprfsypkatctslstrfctiKMSATSEQAAAAtaqkpskksnktaiketlltprfyttdfDEMETLFNTEINKKLNQAEFEALLQEFKtdynqthfvRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKarkytffkpkFIFYATYLSEKIGYWRYITIYRHlkanpefqcypifkyfenwcqdenrhGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQrtafyegigldtkefDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVeldstlctsqvsqqssl
maaemalvkpiskfstiatttkprfsypkatctsLSTRFCTIKMSATSEQAAaataqkpskksnktaiketlltprfyttdFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDStlctsqvsqqssl
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIkmsatseqaaaataqkpskksNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLCTSQVSQQSSL
**********ISKFSTIATTTKPRFSYPKATCTSLSTRFCTIK*************************KETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLCT*********
********KPISKFS*******************************************************TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTL***********
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSA*******************TAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLC**********
*****A*VK**SKFSTI*T*****************TRFCTIKMSATS****************KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLCTS********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCFLQKFMKISVLRINCQYVELDSTLCTSQVSQQSSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
Q945B7405 Magnesium-protoporphyrin N/A no 0.855 0.790 0.882 1e-168
Q6SJV8405 Magnesium-protoporphyrin N/A no 0.855 0.790 0.854 1e-161
Q9M591409 Magnesium-protoporphyrin yes no 0.863 0.789 0.846 1e-159
Q5EFU4417 Magnesium-protoporphyrin N/A no 0.877 0.786 0.791 1e-152
Q9AR22407 Magnesium-protoporphyrin N/A no 0.791 0.727 0.715 1e-131
Q9LD46407 Magnesium-protoporphyrin N/A no 0.868 0.798 0.614 1e-119
Q8YRZ2358 Magnesium-protoporphyrin yes no 0.689 0.720 0.714 1e-113
Q118B4358 Magnesium-protoporphyrin yes no 0.689 0.720 0.699 1e-111
Q6B8U1349 Magnesium-protoporphyrin N/A no 0.703 0.753 0.690 1e-111
P72584358 Magnesium-protoporphyrin N/A no 0.716 0.748 0.678 1e-110
>sp|Q945B7|CRD1_EUPES Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1 Back     alignment and function desciption
 Score =  590 bits (1522), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/331 (88%), Positives = 299/331 (90%), Gaps = 11/331 (3%)

Query: 1   MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPS 60
           MAAEMALVKPI+          P+F  P  T +S S    TIKMSATS+     TA KPS
Sbjct: 1   MAAEMALVKPIT----------PKFINPMRTFSSSSKF-STIKMSATSQSNTTTTATKPS 49

Query: 61  KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVR 120
           KK NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVR
Sbjct: 50  KKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVR 109

Query: 121 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 180
           NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR
Sbjct: 110 NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR 169

Query: 181 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 240
           DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH
Sbjct: 170 DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH 229

Query: 241 LKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 300
           LK NPE+QCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT
Sbjct: 230 LKENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 289

Query: 301 MYLNDCQRTAFYEGIGLDTKEFDMHVIIEVS 331
           MYLNDCQRTAFYEGIGLDTKEFDMHVIIE +
Sbjct: 290 MYLNDCQRTAFYEGIGLDTKEFDMHVIIETN 320
Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME).
Euphorbia esula (taxid: 3993)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8EC: 1
>sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M591|CRD1_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q5EFU4|CRD1_HORVU Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR22|CTH1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LD46|CRD1_CHLRE Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1 Back     alignment and function description
>sp|Q8YRZ2|ACSF3_NOSS1 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=acsF3 PE=3 SV=1 Back     alignment and function description
>sp|Q118B4|ACSF_TRIEI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1 Back     alignment and function description
>sp|Q6B8U1|ACSF_GRATL Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1 Back     alignment and function description
>sp|P72584|ACSF1_SYNY3 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsF1 PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2080560409 CRD1 "COPPER RESPONSE DEFECT 1 0.863 0.789 0.816 1.6e-143
TAIR|locus:2080560 CRD1 "COPPER RESPONSE DEFECT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
 Identities = 271/332 (81%), Positives = 284/332 (85%)

Query:     1 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXX-XXXXXX 59
             MAAEMALVKPISKFS+      P+ S P    +    RF T+                  
Sbjct:     1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSK 52

Query:    60 XXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
                  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFV
Sbjct:    53 SKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFV 112

Query:   120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
             RNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS
Sbjct:   113 RNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 172

Query:   180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
             RDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   173 RDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232

Query:   240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299
             HLK NPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDW+AKLW+RFFCLSVYV
Sbjct:   233 HLKENPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWQAKLWSRFFCLSVYV 292

Query:   300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVS 331
             TMYLNDCQRT FYEGIGL+TKEFDMHVIIE +
Sbjct:   293 TMYLNDCQRTNFYEGIGLNTKEFDMHVIIETN 324


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      374       353   0.00079  117 3  11 22  0.44    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  250 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.98u 0.12s 28.10t   Elapsed:  00:00:01
  Total cpu time:  27.98u 0.12s 28.10t   Elapsed:  00:00:01
  Start:  Sat May 11 03:07:51 2013   End:  Sat May 11 03:07:52 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015979 "photosynthesis" evidence=IEA
GO:0015995 "chlorophyll biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0048529 "magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity" evidence=IEA;NAS;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003677 "DNA binding" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2ISZ6ACSF_RHOP21, ., 1, 4, ., 1, 3, ., 8, 10.50520.74060.7589yesno
A3PD22ACSF_PROM01, ., 1, 4, ., 1, 3, ., 8, 10.52250.72990.7yesno
A5GKR3ACSF_SYNPW1, ., 1, 4, ., 1, 3, ., 8, 10.59440.73790.7666yesno
Q6SJV8CRD1_GOSHI1, ., 1, 4, ., 1, 3, ., 8, 10.85490.85560.7901N/Ano
Q0IAL0ACSF_SYNS31, ., 1, 4, ., 1, 3, ., 8, 10.62400.71920.7472yesno
Q9M591CRD1_ARATH1, ., 1, 4, ., 1, 3, ., 8, 10.84630.86360.7897yesno
Q7V1M1ACSF_PROMP1, ., 1, 4, ., 1, 3, ., 8, 10.51930.72990.7yesno
Q8YRZ2ACSF3_NOSS11, ., 1, 4, ., 1, 3, ., 8, 10.71480.68980.7206yesno
Q7NFA1ACSF_GLOVI1, ., 1, 4, ., 1, 3, ., 8, 10.55590.72720.7861yesno
B3Q7D4ACSF_RHOPT1, ., 1, 4, ., 1, 3, ., 8, 10.51850.69780.7150yesno
Q3AK18ACSF_SYNSC1, ., 1, 4, ., 1, 3, ., 8, 10.59440.72720.7640yesno
A4YNQ1ACSF_BRASO1, ., 1, 4, ., 1, 3, ., 8, 10.53400.68440.7252yesno
Q118B4ACSF_TRIEI1, ., 1, 4, ., 1, 3, ., 8, 10.69960.68980.7206yesno
Q31AS9ACSF_PROM91, ., 1, 4, ., 1, 3, ., 8, 10.52900.72990.7yesno
Q945B7CRD1_EUPES1, ., 1, 4, ., 1, 3, ., 8, 10.88210.85560.7901N/Ano
Q5MZZ2ACSF_SYNP61, ., 1, 4, ., 1, 3, ., 8, 10.61810.71120.7430yesno
Q6N9J7ACSF_RHOPA1, ., 1, 4, ., 1, 3, ., 8, 10.51850.69780.7150yesno
A5GU20ACSF_SYNR31, ., 1, 4, ., 1, 3, ., 8, 10.59430.73790.7666yesno
A5EQ73ACSF_BRASB1, ., 1, 4, ., 1, 3, ., 8, 10.53780.68440.7252yesno
Q5EFU4CRD1_HORVU1, ., 1, 4, ., 1, 3, ., 8, 10.79150.87700.7865N/Ano
Q9AR22CTH1_CHLRE1, ., 1, 4, ., 1, 3, ., 8, 10.71520.79140.7272N/Ano
Q8DJ05ACSF1_THEEB1, ., 1, 4, ., 1, 3, ., 8, 10.58680.71650.7052yesno
A2BR98ACSF_PROMS1, ., 1, 4, ., 1, 3, ., 8, 10.51930.72990.7yesno
A2BWG6ACSF_PROM51, ., 1, 4, ., 1, 3, ., 8, 10.51610.72990.7yesno
Q7U6Y8ACSF_SYNPX1, ., 1, 4, ., 1, 3, ., 8, 10.59790.72720.7640yesno
Q31LY2ACSF_SYNE71, ., 1, 4, ., 1, 3, ., 8, 10.61810.71120.7430yesno
A8G4Z1ACSF_PROM21, ., 1, 4, ., 1, 3, ., 8, 10.52410.72450.6948yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.13.810.979
3rd Layer1.14.130.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000236
magnesium protoporphyrin IX monomethyl ester (oxidative) cyclase (EC-1.14.13.81) (405 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VI0422
SubName- Full=Putative uncharacterized protein; (1365 aa)
• ••  • 0.760
grail3.0015033802
magnesium protoporphyrin IX methyltransferase (182 aa)
• •• •• 0.649
estExt_Genewise1_v1.C_LG_XVI3731
chlorophyll synthetase (EC-2.5.1.62) (329 aa)
  ••  • 0.544
estExt_fgenesh4_pg.C_LG_VI0825
SubName- Full=Putative uncharacterized protein; (372 aa)
  ••  • 0.540
eugene3.00120625
SubName- Full=Putative uncharacterized protein; (470 aa)
  ••  • 0.485
gw1.IV.2852.1
SubName- Full=Putative uncharacterized protein; (422 aa)
  ••  • 0.448
estExt_fgenesh4_pm.C_LG_XI0237
hypothetical protein (421 aa)
  ••  • 0.446
gw1.IX.3663.1
hypothetical protein (741 aa)
  ••  • 0.445
gw1.66.323.1
geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)
  •   • 0.445
gw1.4339.1.1
annotation not avaliable (413 aa)
  •   • 0.445

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
PLN02508357 PLN02508, PLN02508, magnesium-protoporphyrin IX mo 0.0
cd01047323 cd01047, ACSF, Aerobic Cyclase System Fe-containin 0.0
PRK13654355 PRK13654, PRK13654, magnesium-protoporphyrin IX mo 0.0
TIGR02029337 TIGR02029, AcsF, magnesium-protoporphyrin IX monom 1e-168
CHL00185351 CHL00185, ycf59, magnesium-protoporphyrin IX monom 1e-166
pfam02915137 pfam02915, Rubrerythrin, Rubrerythrin 3e-41
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 3e-07
cd01044125 cd01044, Ferritin_CCC1_N, Ferritin-CCC1, N-termina 0.004
>gnl|CDD|178124 PLN02508, PLN02508, magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
 Score =  590 bits (1522), Expect = 0.0
 Identities = 243/270 (90%), Positives = 257/270 (95%)

Query: 60  SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
            +K  K AIKETLLTPRFYTTDFDEME LFNTEINK L+ AEFEALLQEFKTDYNQTHFV
Sbjct: 1   MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFV 60

Query: 120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
           RN+EFK AADK+QGPLRQIF+EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIF+LMS
Sbjct: 61  RNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMS 120

Query: 180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
           RDEARHAGFLNK LSDFN ALDLGFLTK RKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct: 121 RDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 180

Query: 240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299
           HL+ANP++Q YPIFKYFENWCQDENRHGDFFSAL+KAQPQFLNDWKAKLW+RFFCLSVYV
Sbjct: 181 HLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240

Query: 300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIE 329
           TMYLND QRTAFYEGIGL+TK+F+MHVIIE
Sbjct: 241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIE 270

Length = 357
>gnl|CDD|153106 cd01047, ACSF, Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|237458 PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|131084 TIGR02029, AcsF, magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>gnl|CDD|177087 CHL00185, ycf59, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>gnl|CDD|153103 cd01044, Ferritin_CCC1_N, Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 100.0
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 100.0
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 100.0
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 100.0
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 100.0
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 99.65
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.7
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 96.74
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 95.66
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 95.6
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 95.43
PF13668137 Ferritin_2: Ferritin-like domain 95.24
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 95.17
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 95.03
cd07908154 Mn_catalase_like Manganese catalase-like protein, 94.02
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 93.92
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 93.31
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 93.2
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 92.34
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 91.45
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 90.64
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 90.16
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 89.72
COG1633176 Uncharacterized conserved protein [Function unknow 89.55
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 89.35
PRK10635158 bacterioferritin; Provisional 88.73
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 88.41
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 88.39
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 86.99
cd07908154 Mn_catalase_like Manganese catalase-like protein, 86.05
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 85.69
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 84.55
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 84.18
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 83.51
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 82.96
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 81.5
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information 
Probab=100.00  E-value=7.8e-169  Score=1204.55  Aligned_cols=281  Identities=86%  Similarity=1.376  Sum_probs=278.8

Q ss_pred             CccchhhhhhhccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHHHH
Q 017291           60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF  139 (374)
Q Consensus        60 ~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~F  139 (374)
                      +++++|.|++||||||||||||||+|++|||++||++++|+||+||++|||+||||+|||||+||+++|++|||++|++|
T Consensus         1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F   80 (357)
T PLN02508          1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF   80 (357)
T ss_pred             CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceee
Q 017291          140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI  219 (374)
Q Consensus       140 idFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfI  219 (374)
                      |||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus        81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI  160 (357)
T PLN02508         81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI  160 (357)
T ss_pred             HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhh
Q 017291          220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV  299 (374)
Q Consensus       220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfa  299 (374)
                      |||||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+||||||||||||||
T Consensus       161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa  240 (357)
T PLN02508        161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV  240 (357)
T ss_pred             ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291          300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCF  340 (374)
Q Consensus       300 TMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~  340 (374)
                      |||||||||++||++|||||++||++||++||++|+|+||.
T Consensus       241 TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~  281 (357)
T PLN02508        241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPA  281 (357)
T ss_pred             HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence            99999999999999999999999999999999999999995

>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 93/314 (29%)

Query: 120 RNKEFKEAADKMQGPLR-QIFVEFLERSCTAE-----FSGFL--LYKELGRRLKKTNPVV 171
           R K+     D +       I ++    + T +        +L    ++L R +  TNP  
Sbjct: 273 RFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 172 AEIFSLMSRDE-ARHAGFLNKGLSDFNYALD--LGFLTKA--RKYTFFKPKFIF-YATYL 225
             I +   RD  A    + +         ++  L  L  A  RK   F    +F  + ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAHI 387

Query: 226 SEKI--GYWRYIT------------------------------IYRHLKANPE------- 246
              +    W  +                               IY  LK   E       
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 247 --FQCYPIFKYFENW-CQDENRHGDFFSAL---MKAQPQ----------FLN-DW-KAKL 288
                Y I K F++           F+S +   +K              FL+  + + K+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 289 WARFFCLSVYVTMY-LNDCQRTAFYEG-IGLDTKEFDMHVIIEVSLWLSLLVCFLQKF-M 345
             R    +   +   LN  Q+  FY+  I  +  +++             LV  +  F  
Sbjct: 508 --RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER------------LVNAILDFLP 553

Query: 346 KISVLRINCQYVEL 359
           KI    I  +Y +L
Sbjct: 554 KIEENLICSKYTDL 567

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.29
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 96.16
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 96.03
2fzf_A175 Hypothetical protein; structural genomics, southea 95.78
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 95.32
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 94.99
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 94.17
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 92.8
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 92.65
1zpy_A95 Hypothetical protein NE0167; structural genomics, 92.64
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 92.46
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 90.66
2e0z_A345 Virus-like particle; bacteriophage, HK97; 3.60A {P 90.51
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 90.4
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 90.36
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 90.01
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 90.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 89.82
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 89.09
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 88.87
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 88.38
4etr_A153 Putative uncharacterized protein; DUF2383, domain 88.29
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 88.27
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 87.17
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 86.66
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 86.48
2c41_A158 DPS family DNA-binding stress response protein; ir 86.47
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 86.35
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 86.05
2vxx_A192 Starvation induced DNA binding protein; stress res 85.92
3k6c_A95 Uncharacterized protein NE0167; structural genomic 85.82
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 85.31
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 85.13
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 84.67
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 83.6
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 83.47
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 83.43
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 82.61
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 82.53
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 81.14
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 81.1
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 80.13
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
Probab=96.29  E-value=0.0025  Score=50.00  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhhhhccccchhhHHHHhhhhcccC-ccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccc
Q 017291          135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTF  213 (374)
Q Consensus       135 ~R~~FidFLerScTaEFSGflLYKEl~rrlk~~N-P~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTf  213 (374)
                      .+...++-|..-...|+.+...|.-+...+++.+ |.+++.|.-.+.+|..||.-|-+-+.+.|-..+++ +.+-.  ..
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~-~~~~~--~~   83 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTI-PLRVK--QA   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CCCCC--CC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC-CCCCC--CC
Confidence            4567899999999999999999999999996554 67999999999999999999999988887655542 21100  00


Q ss_pred             cCceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccch
Q 017291          214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFL  281 (374)
Q Consensus       214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll  281 (374)
                      ..++=++=...=.|+-.-..|=.+...-++..+..   .-++|+..-++|-+|-..+..++..-|..+
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~---t~~~l~~~~~eee~h~~~l~~~l~~~~~~~  148 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTE---LVVKLEDMIADETNHMEELDRLLNDKAMVL  148 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            11112222222233332233333333333344444   455556567899999999999998755544
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1vjxa_149 a.25.1.1 (A:) Hypothetical protein TM1526 {Thermot 0.002
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Length = 149 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 9/142 (6%)

Query: 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199
            + L  +   E  G   Y+EL    +  N  + + F  ++  E  HA    K     N+ 
Sbjct: 8   SDILTVAIRLEEEGERFYREL---SEHFNGEIKKTFLELADQERIHAEIFRKMSDQENWD 64

Query: 200 LDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRY------ITIYRHLKANPEFQCYPIF 253
               +L     Y  F                           +I  + +           
Sbjct: 65  EVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQ 124

Query: 254 KYFENWCQDENRHGDFFSALMK 275
           K  +     E  H      + +
Sbjct: 125 KTVKKIIDQEKEHLRKLLEMKR 146

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 97.44
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 97.1
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.04
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 96.85
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 95.97
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 95.85
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 95.67
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 95.67
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 95.37
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 95.25
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 95.24
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 95.2
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 94.89
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 89.05
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 88.51
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 87.48
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 87.24
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 83.79
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 82.78
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 82.11
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 81.72
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 81.51
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=97.44  E-value=6.5e-06  Score=64.09  Aligned_cols=125  Identities=12%  Similarity=0.131  Sum_probs=91.4

Q ss_pred             HHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCcee
Q 017291          140 VEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF  218 (374)
Q Consensus       140 idFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pkf  218 (374)
                      ++=|.+....|++-...|--.+...++. .|.+++.|.-+|++|..||.-+-+.|.+.|....+.-.+.....  ..++=
T Consensus         8 ~e~L~~a~~~E~~A~~~Yl~~A~~~~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~~~~~--~~~~~   85 (135)
T d1yuza1           8 LENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAY--SCDLN   85 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCC--CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCcCC--chhhh
Confidence            5668888889999999999999988765 69999999999999999999999999999988887765443322  22332


Q ss_pred             eeeehhcccccchhhhHHHHhHhhhCC-CCcccchhhhhhhhhcccccchhHH
Q 017291          219 IFYATYLSEKIGYWRYITIYRHLKANP-EFQCYPIFKYFENWCQDENRHGDFF  270 (374)
Q Consensus       219 IfYAtYLSEKIGYwRYItIyRHLe~~P-e~rf~PIFk~FE~WCqDEnRHGDfF  270 (374)
                      ++-+..--|    .-+|.+|+.+-+.= +.....+.+||+.++.||..|++-|
T Consensus        86 L~~~~~~ee----~e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E~~H~e~F  134 (135)
T d1yuza1          86 LISGANGEI----YETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERY  134 (135)
T ss_dssp             HHHHHHHHH----HHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            333332222    23555555443322 2345678999999999999999987
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure